RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4154
(346 letters)
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA
polymerase {Bacillus stearothermophilus, newly
identified strain as yet unnamed [TaxId: 1422]}
Length = 171
Score = 32.4 bits (73), Expect = 0.035
Identities = 16/130 (12%), Positives = 33/130 (25%)
Query: 38 CCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDYYYDIDRMDLGECPKIHDLALRA 97
H P+ +K+ + + E + L A
Sbjct: 41 VNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLA 100
Query: 98 DYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQL 157
Y A + + +R + + VL+ + KA A+ +L
Sbjct: 101 AYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWEL 160
Query: 158 AEDIGKKLAK 167
+L +
Sbjct: 161 ERPFLDELRR 170
Score = 27.8 bits (61), Expect = 1.5
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 258 AMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAK 311
A + + +R + + VL+ + KA A+ +L +L +
Sbjct: 117 AKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRR 170
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus
thermophilus [TaxId: 274]}
Length = 92
Score = 27.4 bits (61), Expect = 0.78
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 276 AKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEQTSS 334
K L ++ V+ K + + + E+ G KL KA LG EE L + E +
Sbjct: 26 VKALLRRLGAKVTDSVSRKTSYL-VVGENPGSKLEKARALGVPTLTEEELYRLLEARTG 83
Score = 27.4 bits (61), Expect = 0.86
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 132 AKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLR 191
K L ++ V+ K + + + E+ G KL KA LG EE L + +E
Sbjct: 26 VKALLRRLGAKVTDSVSRKTSYL-VVGENPGSKLEKARALGVPTLTEEELYRL--LEART 82
Query: 192 KKKAE 196
KKAE
Sbjct: 83 GKKAE 87
>d2ibna1 a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {Human
(Homo sapiens) [TaxId: 9606]}
Length = 249
Score = 27.9 bits (62), Expect = 1.7
Identities = 6/51 (11%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 92 DLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAK-QRLLETQE 141
D + + ++A++ L + + D + +T E
Sbjct: 18 DFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAE 68
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 27.6 bits (60), Expect = 2.1
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 96 RADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLE 138
R+ A D Y D +A Q +I D RT K LL
Sbjct: 8 RSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLG 50
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 27.0 bits (59), Expect = 2.3
Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 7/131 (5%)
Query: 130 ELAKQRLLETQEVLSA---EVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTE 186
E + ++LET E + EV + + + + G+KL + L F ++ L
Sbjct: 11 ESSGPKVLETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQV--FKRDADDLGKW 68
Query: 187 IEDLRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGF 246
I K + +Y + Q+ + + + + H
Sbjct: 69 IM--EKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAH 126
Query: 247 IKIREKLAELQ 257
+ + + EL+
Sbjct: 127 EETKAHIEELR 137
>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon
Sulfolobus tokodaii [TaxId: 111955]}
Length = 161
Score = 26.4 bits (58), Expect = 3.3
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 304 DIGKKLAKAEELGAEGFVEESLKLMTEQTSS 334
+I +KL A++ +G+++E +K++ E T S
Sbjct: 1 EIIRKLMDAKKFLLDGYIDEGVKIVLEITKS 31
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 60
Score = 24.6 bits (54), Expect = 3.6
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 8/46 (17%)
Query: 149 EKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKK 194
E+ + G L AE+ GF + ++ K
Sbjct: 2 ERYKSFKLFTSVFGVGLKTAEKWFRMGF--------RTLSKIQSDK 39
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 26.2 bits (56), Expect = 7.1
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 13/55 (23%)
Query: 129 TELAKQRLLETQEVLSAEVAEKA-----------NAVHQLAEDIGKKLAKAEELG 172
+L + L++ E+ V N V D +L++A G
Sbjct: 44 LQLV--QKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQG 96
Score = 26.2 bits (56), Expect = 7.1
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 13/55 (23%)
Query: 273 TELAKQRLLETQEVLSAEVAEKA-----------NAVHQLAEDIGKKLAKAEELG 316
+L + L++ E+ V N V D +L++A G
Sbjct: 44 LQLV--QKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQG 96
>d1sqda2 d.32.1.3 (A:181-410) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 230
Score = 25.8 bits (56), Expect = 7.2
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 161 IGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDTYRNSMPASSYQQQKLRV 217
I L E G + S + + ++RK+ + + S P + YQ K RV
Sbjct: 93 IQTYLEHNEGAGLQHLALMSEDIFRTLREMRKRSSIGGFDFMPSPPPTYYQNLKKRV 149
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.376
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,267,782
Number of extensions: 59110
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 28
Length of query: 346
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,226,816
Effective search space: 318972160
Effective search space used: 318972160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)