BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4156
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 70/101 (69%)
Query: 33 MVLSDNDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQA 92
M + VVIVSAART IGSF G+L+ + DLGST IKEVLKRA V P ++SEVI G
Sbjct: 1 MNAGSDPVVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHV 60
Query: 93 LTAGQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTL 133
L AG GQNP RQAS+ A IP VPA M+ GSGLK+V L
Sbjct: 61 LAAGCGQNPVRQASVGAGIPYSVPAWSCQMIXGSGLKAVCL 101
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 72/98 (73%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+VI SAART +GSF G+ + AH+LG+T I VL+RA V E++EVILGQ L AG+GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
NPARQA++KA +P E A +N LCGSGL++V L +Q
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQ 102
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 72/98 (73%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+VI SAART +GSF G+ + AH+LG+T I VL+RA V E++EVILGQ L AG+GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
NPARQA++KA +P E A +N LCGSGL++V L +Q
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQ 102
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 72/98 (73%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+VI SAART +GSF G+ + AH+LG+T I VL+RA V E++EVILGQ L AG+GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
NPARQA++KA +P E A +N LCGSGL++V L +Q
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQ 102
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 72/98 (73%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+VI SAART +GSF G+ + AH+LG+T I VL+RA V E++EVILGQ L AG+GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
NPARQA++KA +P E A +N LCGSGL++V L +Q
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQ 102
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 72/98 (73%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+VI SAART +GSF G+ + AH+LG+T I VL+RA V E++EVILGQ L AG+GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
NPARQA++KA +P E A +N LCGSGL++V L +Q
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQ 102
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 72/98 (73%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+VI SAART +GSF G+ + AH+LG+T I VL+RA V E++EVILGQ L AG+GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
NPARQA++KA +P E A +N LCGSGL++V L +Q
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQ 102
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 72/98 (73%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+VI SAART +GSF G+ + AH+LG+T I VL+RA V E++EVILGQ L AG+GQ
Sbjct: 2 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 61
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
NPARQA++KA +P E A +N LCGSGL++V L +Q
Sbjct: 62 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQ 99
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 72/98 (73%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+VI SAART +GSF G+ + AH+LG+T I VL+RA V E++EVILGQ L AG+GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
NPARQA++KA +P E A +N LCGSGL++V L +Q
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQ 102
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 72/98 (73%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+VI SAART +GSF G+ + AH+LG+T I VL+RA V E++EVILGQ L AG+GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
NPARQA++KA +P E A +N LCGSGL++V L +Q
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQ 102
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 71/98 (72%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+VI SAART +GSF G+ + AH+LG+T I VL+RA V E++EVILGQ L AG+G
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGA 64
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
NPARQA++KA +P E A +N LCGSGL++V L +Q
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQ 102
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 71/98 (72%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+VI SAART +GSF G+ + AH+LG+T I VL+RA V E++EVILGQ L AG+GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
NPARQA++KA +P E A +N L GSGL++V L +Q
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQ 102
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 71/98 (72%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+VI SAART +GSF G+ + AH+LG+T I VL+RA V E++EVILGQ L AG+GQ
Sbjct: 2 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 61
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
NPARQA++KA +P E A +N L GSGL++V L +Q
Sbjct: 62 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQ 99
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 71/98 (72%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+VI SAART +GSF G+ + AH+LG+T I VL+RA V E++EVILGQ L AG+GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
NPARQA++KA +P E A +N L GSGL++V L +Q
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQ 102
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 71/98 (72%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+VI SAART +GSF G+ + AH+LG+T I VL+RA V E++EVILGQ L AG+GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
NPARQA++KA +P E A +N L GSGL++V L +Q
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQ 102
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 71/98 (72%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+VI SAART +GSF G+ + AH+LG+T I VL+RA V E++EVILGQ L AG+GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
NPARQA++KA +P E A +N L GSGL++V L +Q
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQ 102
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 71/98 (72%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+VI SAART +GSF G+ + AH+LG+T I VL+RA V E++EVILGQ L AG+GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
NPARQA++KA +P E A +N L GSGL++V L +Q
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQ 102
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 71/98 (72%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+VI SAART +GSF G+ + AH+LG+T I VL+RA V E++EVILGQ L AG+GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
NPARQA++KA +P E A +N L GSGL++V L +Q
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQ 102
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 74/103 (71%)
Query: 34 VLSDNDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQAL 93
V++ +VVI SAART +GSF G+ + A +LG TA KE +KRAN+ P+ I E +LG L
Sbjct: 3 VMNMREVVIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVL 62
Query: 94 TAGQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSR 136
TAG GQN ARQ ++ A IP E PA +N++CGSGL+SV++ S+
Sbjct: 63 TAGLGQNIARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQ 105
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 102 bits (255), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 65/98 (66%)
Query: 39 DVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQG 98
DVVIVSA RTPIGSF G A LG+ A+KE + R + +EI EVI+G L G G
Sbjct: 6 DVVIVSAVRTPIGSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGLG 65
Query: 99 QNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSR 136
QN ARQ +I A IPN VP+ VN LCGSGLKSV L ++
Sbjct: 66 QNVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQ 103
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 38 NDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQ 97
+VVIVSA RTPIGSFLGSLS L A LGS AI+ +++A + E+ E +G L G+
Sbjct: 8 KEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGE 67
Query: 98 GQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQQVLLTLH 144
GQ P RQA + A +P P + +N +C SG+K++ + S Q L+ H
Sbjct: 68 GQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMAS--QSLMCGH 112
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 92.8 bits (229), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 2/112 (1%)
Query: 33 MVLSDNDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQA 92
+V ++VVIVSA RTPIGSFLGSLS L A LGS AI+ +++A + E+ E +G
Sbjct: 14 LVPRGSEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNV 73
Query: 93 LTAGQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQQVLLTLH 144
L G+GQ P RQA + A +P P + +N + SG+K++ + S Q L+ H
Sbjct: 74 LQGGEGQAPTRQAVLGAGLPISTPCTTINKVXASGMKAIMMAS--QSLMCGH 123
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 38 NDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQ 97
+VVIVSA RTPIGSFLGSLS L A LGS AI+ +++A + E+ E +G L G+
Sbjct: 8 KEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGE 67
Query: 98 GQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQQVLLTLH 144
GQ P RQA + A +P P + +N + SG+K++ + S Q L+ H
Sbjct: 68 GQAPTRQAVLGAGLPISTPCTTINKVXASGMKAIMMAS--QSLMCGH 112
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 42 IVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQ-GQN 100
IV A RTPIG G+L+ ++ DL + A+ ++ R+ V E+ +V G A AG+ +N
Sbjct: 6 IVEAVRTPIGKHGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGEDNRN 65
Query: 101 PARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQQVLLTLHWLGNGAQY 152
AR A + A P EV VN LCGSGL++V +R W G G Y
Sbjct: 66 VARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARA------IWAGEGKVY 111
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 56/100 (56%)
Query: 38 NDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQ 97
++VVI +A R+PIG+F G+L + +L ++E +KR V P+E+ EVILG +
Sbjct: 5 HNVVITAAVRSPIGTFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQRTD 64
Query: 98 GQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
N AR A++ A P+ V + SG++++ + Q
Sbjct: 65 EANTARTAALAAGFPDTVTGYTIQRQXSSGMQAIMSAAMQ 104
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 38 NDVVIVSAARTPI-GSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAG 96
+DVVIV+A R+P+ + G L + D+ + +K ++++ N+ P E+ ++++G L AG
Sbjct: 33 DDVVIVAAYRSPLCKAKRGGLKDTYPDDILAPVLKALIEKTNINPAEVGDIVVGSVLGAG 92
Query: 97 -QGQNPARQASIKANIPNEVPASLVNMLCGSGLKSV 131
Q + R A+ A P VP VN C SGL++V
Sbjct: 93 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAV 128
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 35 LSDNDVVIVSAARTPIGSFLGSLSE-LKAHDLGSTAIKEVLKR-ANVLPNEISEVILGQA 92
L+ DVVIV RTP+G G + +A D+ + I +VL+R + V P E+ +VI G
Sbjct: 2 LNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCV 61
Query: 93 -LTAGQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQQVLLTLHWLGNG 149
T QG N AR AS+ IP+ A V+ LCGS + + L + Q ++T GNG
Sbjct: 62 NQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSA--LHTAAQAIMT----GNG 113
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 35 LSDNDVVIVSAARTPI-GSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQAL 93
L +DVVIV+A RTP+ S G+ + DL + ++ ++++ N+ P+E+ ++++G L
Sbjct: 10 LYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVL 69
Query: 94 TAG-QGQNPARQASIKANIPNEVPASLVNMLCGSGLKSV 131
G Q + R A+ A P V VN C SGL++V
Sbjct: 70 APGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAV 108
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 35 LSDNDVVIVSAARTPI-GSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQAL 93
L +DVVIV+A RTP+ S G+ + DL + ++ ++++ N+ P+E+ ++++G L
Sbjct: 27 LYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVL 86
Query: 94 TAG-QGQNPARQASIKANIPNEVPASLVNMLCGSGLKSV 131
G Q + R A+ A P V VN C SGL++V
Sbjct: 87 APGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAV 125
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 36 SDNDVVIVSAARTPIG-SFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALT 94
S DVV+V RT I + G + +L S + VLK N+ P ++ ++ +G L
Sbjct: 28 SAADVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQ 87
Query: 95 AGQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSV 131
G G AR A ++IP VP S VN C SGL++V
Sbjct: 88 PGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAV 124
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 40 VVIVSAARTPIG-SFLGSLSELKAHDLGSTAIKEVLKRANVLP----NEISEVILGQALT 94
VVIV A RTP G S G+ ++A DL + + +L R L ++I + Q L
Sbjct: 4 VVIVDAIRTPXGRSKGGAFRNVRAEDLSAHLXRSLLARNPSLTAATLDDIYWGCVQQTLE 63
Query: 95 AGQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSR 136
QG N AR A++ A IP+ VPA VN LCGS +++ +R
Sbjct: 64 --QGFNIARNAALLAEIPHSVPAVTVNRLCGSSXQALHDAAR 103
>pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 39 DVVIVSAARTPIGS-FLGSLSELKAHDLGSTAIKEVLKRANVLP-------NEISEVILG 90
DVVIV+A R+ IG F G+ ++ L + E + R P N I EV G
Sbjct: 11 DVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGR---FPEPLRADLNLIEEVACG 67
Query: 91 QALTAGQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVT 132
L G G R A + + IP P +N C SGL +V
Sbjct: 68 NVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVN 109
>pdb|1PXT|A Chain A, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
pdb|1PXT|B Chain B, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
Length = 390
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 39 DVVIVSAARTPIGS-FLGSLSELKAHDLGSTAIKEVLKRANVLP-------NEISEVILG 90
DVVIV+A R+ IG F G+ ++ L + E + R P N I EV G
Sbjct: 8 DVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGR---FPEPLRADLNLIEEVACG 64
Query: 91 QALTAGQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVT 132
L G G R A + + IP P +N C SGL +V
Sbjct: 65 NVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVN 106
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 38 NDVVIVSAARTPIGSFL-GSLSELKAHDLGSTAIKEVLKRANVLPNE-ISEVILGQALTA 95
+ I A RTP G GSL+E+K +L + E+ +R L IS++ILG
Sbjct: 7 EEAFIYEAIRTPRGKQKNGSLTEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVVSPV 66
Query: 96 G-QGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQQV 139
G QG + AR A + A +P +N C SGL++V T+ Q+V
Sbjct: 67 GDQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVN-TAAQKV 110
>pdb|1UDI|E Chain E, Nucleotide Mimicry In The Crystal Structure Of The Uracil-
Dna Glycosylase-Uracil Glycosylase Inhibitor Protein
Complex
pdb|1LAU|E Chain E, Uracil-Dna Glycosylase
pdb|1UDG|A Chain A, The Structural Basis Of Specific Base Excision Repair By
Uracil-Dna Glycosylase
pdb|1UDH|A Chain A, The Structural Basis Of Specific Base Excision Repair By
Uracil-Dna Glycosylase
Length = 244
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 81 PNEISEVILGQALTAGQGQNPARQASIKANIPNEVPASLVNML 123
P+E+ VI+GQ GQ S++AN+P P SL N+L
Sbjct: 77 PDEVRVVIIGQDPYHHPGQAHGLAFSVRANVPP--PPSLRNVL 117
>pdb|2C53|A Chain A, A Comparative Study Of Uracil Dna Glycosylases From Human
And Herpes Simplex Virus Type 1
pdb|2C56|A Chain A, A Comparative Study Of Uracil Dna Glycosylases From Human
And Herpes Simplex Virus Type 1
Length = 244
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 81 PNEISEVILGQALTAGQGQNPARQASIKANIPNEVPASLVNML 123
P+E+ VI+GQ GQ S++AN+P P SL N+L
Sbjct: 77 PDEVRVVIIGQNPYHHPGQAHGLAFSVRANVPP--PPSLRNVL 117
>pdb|2X9Z|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
Length = 262
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 24/94 (25%)
Query: 84 ISEVILGQALTAGQGQNPARQASIKANIPNE-----------------VPA------SLV 120
I EV +T G NP + K N PNE +PA LV
Sbjct: 125 IVEVPESNDVTFNYGNNPDHGNTPKPNKPNENGDLTLTKTWVDATGAPIPAGAEATFDLV 184
Query: 121 NMLCGSGLKSVTLTSRQQVLLTLHWLGNGAQYHI 154
N G +++VTLT+ + +T++ L +Y
Sbjct: 185 NAQAGKVVQTVTLTTDKNT-VTVNGLDKNTEYKF 217
>pdb|2X9Y|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
Length = 444
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 24/94 (25%)
Query: 84 ISEVILGQALTAGQGQNPARQASIKANIPNE-----------------VPA------SLV 120
I EV +T G NP + K N PNE +PA LV
Sbjct: 128 IVEVPESNDVTFNYGNNPDHGNTPKPNKPNENGDLTLTKTWVDATGAPIPAGAEATFDLV 187
Query: 121 NMLCGSGLKSVTLTSRQQVLLTLHWLGNGAQYHI 154
N G +++VTLT+ + +T++ L +Y
Sbjct: 188 NAQAGKVVQTVTLTTDKNT-VTVNGLDKNTEYKF 220
>pdb|2X9W|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
pdb|2X9X|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
Length = 444
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 24/94 (25%)
Query: 84 ISEVILGQALTAGQGQNPARQASIKANIPNE-----------------VPA------SLV 120
I EV +T G NP + K N PNE +PA LV
Sbjct: 128 IVEVPESNDVTFNYGNNPDHGNTPKPNKPNENGDLTLTKTWVDATGAPIPAGAEATFDLV 187
Query: 121 NMLCGSGLKSVTLTSRQQVLLTLHWLGNGAQYHI 154
N G +++VTLT+ + +T++ L +Y
Sbjct: 188 NAQAGKVVQTVTLTTDKNT-VTVNGLDKNTEYKF 220
>pdb|2YHW|A Chain A, High-Resolution Crystal Structures Of N-Acetylmannosamine
Kinase: Insights About Substrate Specificity, Activity
And Inhibitor Modelling
Length = 343
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 28 FTRSTMVLSDNDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRA 77
R L D D+++V P +G+L ++A LG+ + +L+ A
Sbjct: 219 LQREAKKLHDEDLLLVEGMSVPKDEAVGALHLIQAAKLGNAKAQSILRTA 268
>pdb|2YHY|A Chain A, Structure Of N-Acetylmannosamine Kinase In Complex With N-
Acetylmannosamine And Adp
pdb|2YI1|A Chain A, Crystal Structure Of N-Acetylmannosamine Kinase In Complex
With N-Acetyl Mannosamine 6-Phosphate And Adp
Length = 343
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 28 FTRSTMVLSDNDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRA 77
R L D D+++V P +G+L ++A LG+ + +L+ A
Sbjct: 219 LQREAKKLHDEDLLLVEGMSVPKDEAVGALHLIQAAKLGNAKAQSILRTA 268
>pdb|3EO3|A Chain A, Crystal Structure Of The N-Acetylmannosamine Kinase Domain
Of Human Gne Protein
pdb|3EO3|B Chain B, Crystal Structure Of The N-Acetylmannosamine Kinase Domain
Of Human Gne Protein
pdb|3EO3|C Chain C, Crystal Structure Of The N-Acetylmannosamine Kinase Domain
Of Human Gne Protein
Length = 333
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 28 FTRSTMVLSDNDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRA 77
R L D D+++V P +G+L ++A LG+ + +L+ A
Sbjct: 209 LQREAKKLHDEDLLLVEGMSVPKDEAVGALHLIQAAKLGNAKAQSILRTA 258
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 49 PIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQNPARQASIK 108
P GS + +LK D+ I VL++A+ P E+ ++ G ++P + IK
Sbjct: 259 PTGSIVDLTVQLKKKDVTKEEINSVLRKASETP-ELKGIL-------GYTEDPIVSSDIK 310
Query: 109 ANIPNEVPASLVNMLCGSGLKSV 131
N + + L M+ +G +
Sbjct: 311 GNSHSSIVDGLETMVLENGFAKI 333
>pdb|3LX6|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
pdb|3LX6|B Chain B, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 410
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 39 DVVIVSAARTPIGSFLGSLSELKAHDLGST 68
DVV + AR P L ++ LK+HD G T
Sbjct: 148 DVVRIIDARRPAXFVLENVKNLKSHDKGKT 177
>pdb|2IY9|A Chain A, Crystal Structure Of The A-Subunit Of The Ab5 Toxin From
E. Coli
Length = 347
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 21 WFIFVTGFTRSTMVLSDNDVVIVSAARTPIGSFLGSLSE 59
W+ G T +TM L+D + +V + +F+G LS+
Sbjct: 25 WYFDAIGLTETTMSLTDKNTPVVVSVVDSGVAFIGGLSD 63
>pdb|3ME5|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 482
Score = 26.2 bits (56), Expect = 8.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 39 DVVIVSAARTPIGSFLGSLSELKAHDLGST 68
DVV + AR P L ++ LK+HD G T
Sbjct: 210 DVVRIIDARRPAXFVLENVKNLKSHDKGKT 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,112,687
Number of Sequences: 62578
Number of extensions: 138416
Number of successful extensions: 368
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 51
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)