RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4156
(160 letters)
>gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional.
Length = 393
Score = 166 bits (422), Expect = 9e-51
Identities = 58/100 (58%), Positives = 75/100 (75%)
Query: 38 NDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQ 97
DVVIVSAARTPIG F G+L ++ A +LG+ IK L+RA V P ++ EVI+GQ L AG
Sbjct: 2 KDVVIVSAARTPIGKFGGALKDVSAVELGAIVIKAALERAGVPPEQVDEVIMGQVLQAGA 61
Query: 98 GQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
GQNPARQA++KA +P EVPA +N +CGSGLK+V L ++
Sbjct: 62 GQNPARQAALKAGLPVEVPALTINKVCGSGLKAVALAAQA 101
>gnl|CDD|215722 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 262
Score = 149 bits (378), Expect = 2e-45
Identities = 62/95 (65%), Positives = 75/95 (78%)
Query: 39 DVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQG 98
DVVIVSAARTPIGSF GSL +L A DLG+ AIK L+RA V P ++ EVI+G L AG+G
Sbjct: 1 DVVIVSAARTPIGSFGGSLKDLSAVDLGAIAIKAALERAGVKPEDVDEVIMGNVLQAGEG 60
Query: 99 QNPARQASIKANIPNEVPASLVNMLCGSGLKSVTL 133
QNPARQA++KA IP+ VPA +N +CGSGLK+V L
Sbjct: 61 QNPARQAALKAGIPDSVPAVTINKVCGSGLKAVAL 95
>gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze
the reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and eukaryotes (cytosol,
microbodies and mitochondria). There are 2 functional
different classes: thiolase-I (3-ketoacyl-CoA thiolase)
and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I
can cleave longer fatty acid molecules and plays an
important role in the beta-oxidative degradation of
fatty acids. Thiolase-II has a high substrate
specificity. Although it can cleave acetoacyl-CoA, its
main function is the synthesis of acetoacyl-CoA from two
molecules of acetyl-CoA, which gives it importance in
several biosynthetic pathways.
Length = 386
Score = 146 bits (370), Expect = 5e-43
Identities = 52/93 (55%), Positives = 70/93 (75%)
Query: 41 VIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQN 100
VIVSA RTPIG F G+L ++ A DLG+ IK +L+RA + P E+ +VI+G L AG+GQN
Sbjct: 1 VIVSAVRTPIGRFGGALKDVSADDLGAAVIKALLERAGLDPEEVDDVIMGNVLQAGEGQN 60
Query: 101 PARQASIKANIPNEVPASLVNMLCGSGLKSVTL 133
PARQA++ A +P VPA+ VN +CGSGL++V L
Sbjct: 61 PARQAALLAGLPESVPATTVNRVCGSGLQAVAL 93
>gnl|CDD|215347 PLN02644, PLN02644, acetyl-CoA C-acetyltransferase.
Length = 394
Score = 128 bits (323), Expect = 4e-36
Identities = 52/106 (49%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 39 DVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQG 98
DV IV ARTPIG FLGSLS L A +LGS AI+ L+RA V P + EV G L+A G
Sbjct: 2 DVCIVGVARTPIGGFLGSLSSLSATELGSIAIQAALERAGVDPALVQEVFFGNVLSANLG 61
Query: 99 QNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQQVLLTLH 144
Q PARQA++ A +P + VN +C SG+K+V L + Q + L ++
Sbjct: 62 QAPARQAALGAGLPPSTICTTVNKVCASGMKAVMLAA-QSIQLGIN 106
>gnl|CDD|181311 PRK08235, PRK08235, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 124 bits (314), Expect = 8e-35
Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 41 VIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQN 100
VIVSAARTP G F GSL ++KA +LG AIKE L+RANV ++ EVI+G L GQGQ
Sbjct: 5 VIVSAARTPFGKFGGSLKDVKATELGGIAIKEALERANVSAEDVEEVIMGTVLQGGQGQI 64
Query: 101 PARQASIKANIPNEVPASLVNMLCGSGLKSVTL 133
P+RQA+ A IP EV VN +C SGL++VTL
Sbjct: 65 PSRQAARAAGIPWEVQTETVNKVCASGLRAVTL 97
>gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases. This
model represents a large family of enzymes which
catalyze the thiolysis of a linear fatty acid CoA (or
acetoacetyl-CoA) using a second CoA molecule to produce
acetyl-CoA and a CoA-ester product two carbons shorter
(or, alternatively, the condensation of two molecules of
acetyl-CoA to produce acetoacetyl-CoA and CoA). This
enzyme is also known as "thiolase", "3-ketoacyl-CoA
thiolase", "beta-ketothiolase" and "Fatty oxidation
complex beta subunit". When catalyzing the degradative
reaction on fatty acids the corresponding EC number is
2.3.1.16. The condensation reaction corresponds to
2.3.1.9. Note that the enzymes which catalyze the
condensation are generally not involved in fatty acid
biosynthesis, which is carried out by a decarboxylating
condensation of acetyl and malonyl esters of acyl
carrier proteins. Rather, this activity may produce
acetoacetyl-CoA for pathways such as IPP biosynthesis in
the absence of sufficient fatty acid oxidation [Fatty
acid and phospholipid metabolism, Other].
Length = 386
Score = 122 bits (308), Expect = 5e-34
Identities = 49/92 (53%), Positives = 63/92 (68%)
Query: 42 IVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQNP 101
IV+AARTPIG F GSL ++ A DLG+ IKE+L+R + P I +VI G L AG+ QN
Sbjct: 1 IVAAARTPIGKFGGSLKDVSAEDLGAAVIKELLERNPLDPELIDDVIFGNVLQAGEQQNI 60
Query: 102 ARQASIKANIPNEVPASLVNMLCGSGLKSVTL 133
ARQA++ A +P VPA VN C SGL++V L
Sbjct: 61 ARQAALLAGLPESVPAYTVNRQCASGLQAVIL 92
>gnl|CDD|168156 PRK05656, PRK05656, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 121 bits (305), Expect = 1e-33
Identities = 54/99 (54%), Positives = 75/99 (75%)
Query: 38 NDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQ 97
DVVIV+A RT IGSF GSL+ + A +LG+ I+ +L++ + P ++ EVILGQ LTAG
Sbjct: 2 QDVVIVAATRTAIGSFQGSLANIPAVELGAAVIRRLLEQTGLDPAQVDEVILGQVLTAGA 61
Query: 98 GQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSR 136
GQNPARQA+IKA +P+ VPA +N +CGSGLK++ L ++
Sbjct: 62 GQNPARQAAIKAGLPHSVPAMTLNKVCGSGLKALHLAAQ 100
>gnl|CDD|180775 PRK06954, PRK06954, acetyl-CoA acetyltransferase; Provisional.
Length = 397
Score = 101 bits (253), Expect = 4e-26
Identities = 43/91 (47%), Positives = 62/91 (68%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+VI SAARTP+ +F G + L A LG+ AI ++RA + P +I EV++G L AGQGQ
Sbjct: 9 IVIASAARTPMAAFQGEFASLTAPQLGAAAIAAAVERAGLKPEQIDEVVMGCVLPAGQGQ 68
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKS 130
PARQA++ A +P V + VN +CGSG+++
Sbjct: 69 APARQAALGAGLPLSVGCTTVNKMCGSGMRA 99
>gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism].
Length = 392
Score = 100 bits (252), Expect = 6e-26
Identities = 51/101 (50%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Query: 37 DNDVVIVSAARTPIGSF-LGSLSELKAHDLGSTAIKEVLKR--ANVLPNEISEVILGQAL 93
DV IV A RTP G F GSL+EL A LG+ I L+R A+V ++ +VILG L
Sbjct: 1 MRDVAIVGAGRTPFGKFGDGSLAELAAEALGAALIDAGLERAPADVDAADVDDVILGCVL 60
Query: 94 TAG-QGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTL 133
AG QGQN ARQA++ A +P VPA VN C SGL +V L
Sbjct: 61 QAGEQGQNIARQAALAAGLPGSVPAVTVNRACASGLAAVRL 101
>gnl|CDD|102340 PRK06366, PRK06366, acetyl-CoA acetyltransferase; Provisional.
Length = 388
Score = 95.8 bits (238), Expect = 4e-24
Identities = 47/103 (45%), Positives = 63/103 (61%)
Query: 38 NDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQ 97
DV IVSA RT IG F S S++KA LG AIK V+ A + P + EVI+G + AG
Sbjct: 2 KDVYIVSAKRTAIGKFGRSFSKIKAPQLGGAAIKAVIDDAKLDPALVQEVIMGNVIQAGV 61
Query: 98 GQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQQVL 140
GQNPA QA+ A +P V VN++C SG+ +V +R+ +L
Sbjct: 62 GQNPAGQAAYHAGLPFGVTKYTVNVVCASGMLAVESAAREIML 104
>gnl|CDD|168632 PRK06633, PRK06633, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 95.9 bits (238), Expect = 4e-24
Identities = 54/121 (44%), Positives = 72/121 (59%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
V I A RT GSF+GSLS A L + IK++L+ + + P ++EVILGQ +T G GQ
Sbjct: 5 VYITHAKRTAFGSFMGSLSTTPAPMLAAHLIKDILQNSKIDPALVNEVILGQVITGGSGQ 64
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQQVLLTLHWLGNGAQYHITADAH 159
NPARQ I A IP EVP +N +CGSGLKSV L + + + G Q +++ H
Sbjct: 65 NPARQTLIHAGIPKEVPGYTINKVCGSGLKSVALAANSIMTGDNEIVIAGGQENMSLGMH 124
Query: 160 G 160
G
Sbjct: 125 G 125
>gnl|CDD|181625 PRK09051, PRK09051, beta-ketothiolase; Provisional.
Length = 394
Score = 93.9 bits (234), Expect = 3e-23
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 36 SDNDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQAL-T 94
+VV+VS RT IG+F GSL ++ DLG+T ++E L RA V P+++ V+ G + T
Sbjct: 1 MMREVVVVSGVRTAIGTFGGSLKDVAPTDLGATVVREALARAGVDPDQVGHVVFGHVIPT 60
Query: 95 AGQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQQVLL 141
+ +R A+I A +P E PA VN LCGSGL+++ +++ Q +LL
Sbjct: 61 EPRDMYLSRVAAINAGVPQETPAFNVNRLCGSGLQAI-VSAAQAILL 106
>gnl|CDD|181072 PRK07661, PRK07661, acetyl-CoA acetyltransferase; Provisional.
Length = 391
Score = 84.8 bits (210), Expect = 5e-20
Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 41 VIVSAARTPIG-SFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQAL-TAGQG 98
VIV+ ARTP+G + GSL ++ DLG+ +KE LKRA I ++I+G A+ A QG
Sbjct: 5 VIVAGARTPVGKAKKGSLKTVRPDDLGALVVKETLKRAGNYEGPIDDLIIGCAMPEAEQG 64
Query: 99 QNPARQASIKANIPNEVPASLVNMLCGSGLKSV 131
N AR A +P VPA +N C SGL+S+
Sbjct: 65 LNMARNIGALAGLPYTVPAITINRYCSSGLQSI 97
>gnl|CDD|181624 PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated.
Length = 401
Score = 84.6 bits (210), Expect = 5e-20
Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 38 NDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKR-ANVLPNEISEVILGQALTAG 96
+ I A RTPIG + G+LS ++A DLG+ +K ++ R V + +VI G A AG
Sbjct: 2 TEAFICDAIRTPIGRYGGALSSVRADDLGAVPLKALMARNPGVDWEAVDDVIYGCANQAG 61
Query: 97 Q-GQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
+ +N AR +++ A +P VP + +N LCGSG+ +V +R
Sbjct: 62 EDNRNVARMSALLAGLPVSVPGTTINRLCGSGMDAVGTAARA 103
>gnl|CDD|238422 cd00826, nondecarbox_cond_enzymes, nondecarboxylating condensing
enzymes; In general, thiolases catalyze the reversible
thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and
acetyl-CoA, a 2-step reaction involving a covalent
intermediate formed with a catalytic cysteine. There are
2 functional different classes: thiolase-I
(3-ketoacyl-CoA thiolase) and thiolase-II
(acetoacetyl-CoA thiolase). Thiolase-I can cleave longer
fatty acid molecules and plays an important role in the
beta-oxidative degradation of fatty acids. Thiolase-II
has a high substrate specificity. Although it can cleave
acetoacyl-CoA, its main function is the synthesis of
acetoacyl-CoA from two molecules of acetyl-CoA, which
gives it importance in several biosynthetic pathways.
Length = 393
Score = 82.5 bits (203), Expect = 3e-19
Identities = 39/98 (39%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 43 VSAARTPIGSFLGSLSELK---AHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
AA T G F G AH+ G+ AI L+ A V + E LGQ L AG+GQ
Sbjct: 1 AGAAMTAFGKFGGENGADANDLAHEAGAKAIAAALEPAGVAAGAVEEACLGQVLGAGEGQ 60
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
N A+QA++ A E PA +N LCGSGL+++ L +
Sbjct: 61 NCAQQAAMHAGGLQEAPAIGMNNLCGSGLRALALAMQL 98
>gnl|CDD|131483 TIGR02430, pcaF, 3-oxoadipyl-CoA thiolase. Members of this family
are designated beta-ketoadipyl CoA thiolase, an enzyme
that acts at the end of pathways for the degradation of
protocatechuate (from benzoate and related compounds)
and of phenylacetic acid.
Length = 400
Score = 82.5 bits (204), Expect = 3e-19
Identities = 42/101 (41%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 38 NDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKR-ANVLPNEISEVILGQALTAG 96
+ I A RTPIG + GSLS ++A DL + IK +L R + I +VI G A AG
Sbjct: 1 REAYICDAIRTPIGRYGGSLSSVRADDLAAVPIKALLARNPQLDWAAIDDVIYGCANQAG 60
Query: 97 Q-GQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSR 136
+ +N AR A++ A +P VP + VN LCGSGL ++ + +R
Sbjct: 61 EDNRNVARMAALLAGLPVSVPGTTVNRLCGSGLDAIGMAAR 101
>gnl|CDD|235741 PRK06205, PRK06205, acetyl-CoA acetyltransferase; Provisional.
Length = 404
Score = 82.3 bits (204), Expect = 4e-19
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 39 DVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQG 98
D VI RTP+G F G+ ++ A +L +T I+ +++R + P I +VI GQ G+
Sbjct: 3 DAVICEPVRTPVGRFGGAFKDVPAEELAATVIRALVERTGIDPARIDDVIFGQGYPNGEA 62
Query: 99 QNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQQV 139
R A++ A +P VP ++ CGSGL++V +T+ QV
Sbjct: 63 PAIGRVAALDAGLPVTVPGMQLDRRCGSGLQAV-ITAAMQV 102
>gnl|CDD|183998 PRK13359, PRK13359, beta-ketoadipyl CoA thiolase; Provisional.
Length = 400
Score = 78.7 bits (194), Expect = 9e-18
Identities = 40/100 (40%), Positives = 63/100 (63%), Gaps = 2/100 (2%)
Query: 39 DVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKR-ANVLPNEISEVILGQALTAGQ 97
+ I A RTPIG + G+LS ++A DLG+ +K +++R +V I +VI G A AG+
Sbjct: 3 EAFICDAIRTPIGRYGGALSSVRADDLGAVPLKALVERNPDVDWAAIDDVIYGCANQAGE 62
Query: 98 -GQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSR 136
+N AR + + A +P+ VP S +N LCGSG+ +V + +R
Sbjct: 63 DNRNVARMSLLLAGLPHGVPGSTINRLCGSGMDAVGVAAR 102
>gnl|CDD|181592 PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 387
Score = 75.0 bits (185), Expect = 2e-16
Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 38 NDVVIVSAARTPIG-SFLGSLSELKAHDLGSTAIKEVLKR-ANVLPNEISEVILG---QA 92
DVVIV A RTP+G S G+ ++A DL + ++ +L R + P EI ++I G Q
Sbjct: 2 EDVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALDPAEIDDIIWGCVQQT 61
Query: 93 LTAGQGQNPARQASIKANIPNEVPASLVNMLCGS 126
L QG N AR A++ A IP+ VPA VN LCGS
Sbjct: 62 LE--QGFNIARNAALLAGIPHSVPAVTVNRLCGS 93
>gnl|CDD|180843 PRK07108, PRK07108, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 74.4 bits (183), Expect = 2e-16
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 38 NDVVIVSAARTPIG-SFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAG 96
+ VIVS ARTP+ S+ G+ + LG ++ ++RA + P E+ +VI+G A G
Sbjct: 2 TEAVIVSTARTPLAKSWRGAFNMTHGATLGGHVVQHAVERAKLDPAEVEDVIMGCANPEG 61
Query: 97 -QGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
G N ARQ +++A +P VP VN C SGL+++ L +++
Sbjct: 62 ATGANIARQIALRAGLPVTVPGMTVNRFCSSGLQTIALAAQR 103
>gnl|CDD|215161 PLN02287, PLN02287, 3-ketoacyl-CoA thiolase.
Length = 452
Score = 73.3 bits (180), Expect = 8e-16
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 33 MVLSDNDVVIVSAARTPI-GSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQ 91
+DVVIV+A RTPI + G + DL + +K V+++ + P+E+ ++++G
Sbjct: 41 TTAFGDDVVIVAAYRTPICKAKRGGFKDTYPDDLLAPVLKAVVEKTGLNPSEVGDIVVGT 100
Query: 92 ALTAG-QGQNPARQASIKANIPNEVPASLVNMLCGSGLKSV 131
L G Q N R A+ A P VP VN C SGL++V
Sbjct: 101 VLAPGSQRANECRMAAFYAGFPETVPVRTVNRQCSSGLQAV 141
>gnl|CDD|181242 PRK08131, PRK08131, acetyl-CoA acetyltransferase; Provisional.
Length = 401
Score = 70.2 bits (172), Expect = 7e-15
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 39 DVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQ- 97
D I R+P G G+L+ ++ DL +T I+ +L+++ ++I +VILG AG+
Sbjct: 3 DAYIYDGLRSPFGRHAGALASVRPDDLAATVIRRLLEKSGFPGDDIEDVILGCTNQAGED 62
Query: 98 GQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSR 136
+N AR A + A +P VP VN LC SGL +V +R
Sbjct: 63 SRNVARNALLLAGLPVTVPGQTVNRLCASGLAAVIDAAR 101
>gnl|CDD|181145 PRK07850, PRK07850, acetyl-CoA acetyltransferase; Provisional.
Length = 387
Score = 68.6 bits (168), Expect = 2e-14
Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 41 VIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAG-QGQ 99
VIV A RTPIG G LS L A +L + VL RA + P ++ +VI G AG Q
Sbjct: 5 VIVEAVRTPIGKRNGWLSGLHAAELLGAVQRAVLDRAGIDPGDVEQVIGGCVTQAGEQSN 64
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVTL 133
N R A + A +P V A+ ++ CGS ++ L
Sbjct: 65 NITRTAWLHAGLPYHVGATTIDCQCGSAQQANHL 98
>gnl|CDD|181626 PRK09052, PRK09052, acetyl-CoA acetyltransferase; Provisional.
Length = 399
Score = 66.6 bits (163), Expect = 1e-13
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 39 DVVIVSAARTPIG-SFLGSLSELKAHDLGSTAIKEVLKRA-NVLPNEISEVILGQAL-TA 95
D IV+A RTP+G + G + DL + ++ + + + P I + I+G A+ A
Sbjct: 7 DAYIVAATRTPVGKAPRGMFKNTRPDDLLAHVLRSAVAQVPGLDPKLIEDAIVGCAMPEA 66
Query: 96 GQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSV 131
QG N AR ++ A +PN V VN C SGL++V
Sbjct: 67 EQGLNVARIGALLAGLPNSVGGVTVNRFCASGLQAV 102
>gnl|CDD|181123 PRK07801, PRK07801, acetyl-CoA acetyltransferase; Provisional.
Length = 382
Score = 64.3 bits (157), Expect = 7e-13
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 42 IVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAG-QGQN 100
IV A RTP+G G L+ + DLG+ +K ++ R + P + +VI G T G Q N
Sbjct: 6 IVDAVRTPVGKRKGGLAGVHPADLGAHVLKGLVDRTGIDPAAVDDVIFGCVDTIGPQAGN 65
Query: 101 PARQASIKANIPNEVPASLVNMLCGSGLKSV 131
AR + + A +P EVP V+ CGS +++
Sbjct: 66 IARTSWLAAGLPEEVPGVTVDRQCGSSQQAI 96
>gnl|CDD|131498 TIGR02445, fadA, fatty oxidation complex, beta subunit FadA. This
subunit of the FadBA complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit. This protein is almost always located
adjacent to FadB (TIGR02437). The FadBA complex is the
major complex active for beta-oxidation of fatty acids
in E. coli [Fatty acid and phospholipid metabolism,
Degradation].
Length = 385
Score = 64.6 bits (157), Expect = 8e-13
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 39 DVVIVSAARTPIG-SFLGSLSELKAHDLGSTAIKEVLKR-ANVLPNEISEVILGQA-LTA 95
DVVIV RTP+G S G+ +A DL + + ++L R V P E+ ++ G T
Sbjct: 1 DVVIVDFGRTPMGRSKGGAFRNTRAEDLSAHLMSKLLARNPKVDPAEVEDIYWGCVQQTL 60
Query: 96 GQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSR 136
QG N AR A++ A IP+ A VN LCGS ++++ +R
Sbjct: 61 EQGFNIARNAALLAQIPHTSAAVTVNRLCGSSMQALHDAAR 101
>gnl|CDD|181146 PRK07851, PRK07851, acetyl-CoA acetyltransferase; Provisional.
Length = 406
Score = 62.7 bits (153), Expect = 3e-12
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 39 DVVIVSAARTPIG-SFLGSLSELKAHDLGSTAIKEVLKRANVL-PNEISEVILGQALTAG 96
+ VIVS AR+PIG +F GSL +++ DL + ++ L + L P +I +++LG L G
Sbjct: 3 EAVIVSTARSPIGRAFKGSLKDMRPDDLAAQMVRAALDKVPALDPTDIDDLMLGCGLPGG 62
Query: 97 -QGQNPARQASIKANIPNEVPASLVNMLCGSGLKS 130
QG N AR ++ +P + VN C S L++
Sbjct: 63 EQGFNMARVVAVLLGYDF-LPGTTVNRYCSSSLQT 96
>gnl|CDD|180659 PRK06690, PRK06690, acetyl-CoA acetyltransferase; Provisional.
Length = 361
Score = 60.2 bits (146), Expect = 2e-11
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 38 NDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQ 97
N VIV A RTPIG G L + + L + + + K + EI +VILG + G
Sbjct: 1 NRAVIVEAKRTPIGKKNGMLKDYEVQQLAAPLLTFLSKG---MEREIDDVILGNVV--GP 55
Query: 98 GQNPARQASIKANIPNEVPASLVNMLCGSGLKSV 131
G N AR ++++A + +P ++ CG+GL+++
Sbjct: 56 GGNVARLSALEAGLGLHIPGVTIDRQCGAGLEAI 89
>gnl|CDD|236197 PRK08242, PRK08242, acetyl-CoA acetyltransferase; Validated.
Length = 402
Score = 56.8 bits (138), Expect = 3e-10
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 39 DVVIVSAARTPIGSFL--GSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAG 96
+ I A RTP G GSL E+K L + ++ + R + + +V+LG G
Sbjct: 3 EAYIYDAVRTPRGKGKKDGSLHEVKPVRLAAGLLEALRDRNGLDTAAVDDVVLGCVTPVG 62
Query: 97 -QGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQQV 139
QG + AR A + A +P VP +N C SGL++V L + +V
Sbjct: 63 DQGADIARTAVLAAGLPETVPGVQINRFCASGLEAVNLAA-AKV 105
>gnl|CDD|180595 PRK06504, PRK06504, acetyl-CoA acetyltransferase; Provisional.
Length = 390
Score = 55.5 bits (134), Expect = 1e-09
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 42 IVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAG-QGQN 100
IV+AART G G L+ DL + + ++ R+ P I +VI+G G Q N
Sbjct: 6 IVAAARTAGGRKGGRLAGWHPADLAAQVLDALVDRSGADPALIEDVIMGCVSQVGEQATN 65
Query: 101 PARQASIKANIPNEVPASLVNMLCGS 126
AR A + + +P VP + ++ CGS
Sbjct: 66 VARNAVLASKLPESVPGTSIDRQCGS 91
>gnl|CDD|180563 PRK06445, PRK06445, acetyl-CoA acetyltransferase; Provisional.
Length = 394
Score = 55.1 bits (133), Expect = 1e-09
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 39 DVVIVSAARTPIGSFLGSLSE------LKAHDLGSTAIKEVLKRANVLPNEISEVILGQA 92
DV +V ART F + ++ +L + I ++++ + P EI ++I G A
Sbjct: 3 DVYLVDFARTAFSRFRPKDPQKDVFNNIRPEELAAMLINRLIEKTGIKPEEIDDIITGCA 62
Query: 93 LTAG-QGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVT 132
L G R A +P +PA V+ C S L +V+
Sbjct: 63 LQVGENWLYGGRHPIFLARLPYNIPAMAVDRQCASSLTTVS 103
>gnl|CDD|181597 PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 428
Score = 49.2 bits (118), Expect = 2e-07
Identities = 24/93 (25%), Positives = 43/93 (46%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+ IVS RTP + + A DLG + E+L R+ + P I +++ GQ + +
Sbjct: 7 IAIVSGLRTPFAKQATAFHGIPAVDLGKMVVGELLARSEIDPELIEQLVFGQVVQMPEAP 66
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSVT 132
N AR+ + + A V+ C + ++V
Sbjct: 67 NIAREIVLGTGMNVHTDAYSVSRACATSFQAVA 99
>gnl|CDD|181265 PRK08170, PRK08170, acetyl-CoA acetyltransferase; Provisional.
Length = 426
Score = 48.1 bits (115), Expect = 3e-07
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 39 DVVIVSAARTPIGSFL---GSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTA 95
V IV ARTP FL G A DL A + +L R P+++ EVILG A+ +
Sbjct: 4 PVYIVDGARTP---FLKARGGPGPFSASDLAVAAGRALLNRQPFAPDDLDEVILGCAMPS 60
Query: 96 GQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSV 131
N AR +++ +VPA V C SG++++
Sbjct: 61 PDEANIARVVALRLGCGEKVPAWTVQRNCASGMQAL 96
>gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that
catalyze a (decarboxylating or non-decarboxylating)
Claisen-like condensation reaction. Members are share
strong structural similarity, and are involved in the
synthesis and degradation of fatty acids, and the
production of polyketides, a diverse group of natural
products.
Length = 254
Score = 47.1 bits (112), Expect = 7e-07
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 62 AHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQNPARQASIKANIPNEVPASLVN 121
A +LG A ++ + A + I VI+G +G+ A Q + I PA VN
Sbjct: 7 ASELGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGIS-GGPAYSVN 65
Query: 122 MLCGSGLKSVTLTSRQ 137
C +GL ++ L +Q
Sbjct: 66 QACATGLTALALAVQQ 81
>gnl|CDD|131499 TIGR02446, FadI, fatty oxidation complex, beta subunit FadI. This
subunit of the FadJI complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit, and YfcY. This protein is almost always
located adjacent to FadJ (TIGR02440). The FadJI complex
is needed for anaerobic beta-oxidation of short-chain
fatty acids in E. coli [Fatty acid and phospholipid
metabolism, Degradation].
Length = 430
Score = 41.9 bits (98), Expect = 5e-05
Identities = 23/92 (25%), Positives = 41/92 (44%)
Query: 40 VVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQ 99
+ IV+ RTP + + A DLG + E+L R+ + P I +++ GQ + +
Sbjct: 9 IAIVAGLRTPFARQATAFHGIPAVDLGKMVVSELLARSEIDPKLIEQLVFGQVVQMPEAP 68
Query: 100 NPARQASIKANIPNEVPASLVNMLCGSGLKSV 131
N AR+ + + A V C + +S
Sbjct: 69 NIAREIVLGTGMNVHTDAYSVTRACATSFQSA 100
>gnl|CDD|235675 PRK06025, PRK06025, acetyl-CoA acetyltransferase; Provisional.
Length = 417
Score = 40.9 bits (96), Expect = 1e-04
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 39 DVVIVSAARTP--IGSF-LGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTA 95
+ I+ A RTP IG G+L+ L L +T +K + +R + ++ ++I +
Sbjct: 3 EAYIIDAVRTPRGIGKVGKGALAHLHPQHLAATVLKALAERNGLNTADVDDIIWSTSSQR 62
Query: 96 G-QGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
G QG + R A++ A + ++ CG G+ SV L + Q
Sbjct: 63 GKQGGDLGRMAALDAGYDIKASGVTLDRFCGGGITSVNLAAAQ 105
>gnl|CDD|218882 pfam06074, DUF935, Protein of unknown function (DUF935). This
family consists of several bacterial proteins of unknown
function as well as the Bacteriophage Mu gp29 protein.
Length = 516
Score = 31.5 bits (72), Expect = 0.18
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 60 LKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQNPARQASIKANIPNEV 115
L+A + ++ + EIS+ ILGQ LT+ + +A N+ NEV
Sbjct: 278 LEAAGGSGDVFEALIDWCD---AEISKAILGQTLTS--DGKGSSRAL--GNVHNEV 326
>gnl|CDD|219473 pfam07580, Peptidase_M26_C, M26 IgA1-specific Metallo-endopeptidase
C-terminal region. These peptidases, which cleave
mammalian IgA, are found in Gram-positive bacteria.
Often found associated with pfam00746, they may be
attached to the cell wall.
Length = 731
Score = 30.7 bits (70), Expect = 0.30
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 24/89 (26%)
Query: 33 MVLSDNDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQA 92
MVL D +I S+LK+ +L S A+++VL +N N++ ++ L ++
Sbjct: 19 MVLKDRSSLINDV-----------KSDLKSVELDSDAVRQVLGISND--NKLKDLYLEES 65
Query: 93 LTAGQGQNPARQASIKANIPNEVPASLVN 121
+KAN+ V L N
Sbjct: 66 FDE-----------VKANLDKLVKKLLEN 83
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional.
Length = 318
Score = 29.1 bits (65), Expect = 0.91
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 81 PNEISEVILGQALTAGQGQNPARQASIKANIPNEVPASLVNML 123
P+E+ VI+GQ GQ S++ P P SL N+L
Sbjct: 151 PDEVRVVIIGQDPYHQPGQAHGLAFSVRPGTP--APPSLRNIL 191
>gnl|CDD|237927 PRK15219, PRK15219, carbonic anhydrase; Provisional.
Length = 245
Score = 28.3 bits (63), Expect = 1.9
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 27 GFTRSTMVLSDNDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRAN---VLPNE 83
++ + ++ V+ ++ P S+ SL++ + + I E LK+ N
Sbjct: 13 AVLKAALAMTAASVIGLAGLGVPQISYAASLTKEERDKMTPDQIIESLKQGNKRFRSGKP 72
Query: 84 ISEVILGQALTAGQGQNPARQASIKANIPNEVPASLV 120
L Q + GQ PA A I + I + PA ++
Sbjct: 73 AQHDYLAQKRASAAGQYPA--AVILSCIDSRAPAEII 107
>gnl|CDD|181013 PRK07516, PRK07516, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 28.0 bits (63), Expect = 2.1
Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 11/94 (11%)
Query: 38 NDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAG- 96
IV A TP G L L +E L A + ++ + LG AG
Sbjct: 2 MTASIVGWAHTP----FGKLDAETLESLIVRVAREALAHAGIAAGDVDGIFLGH-FNAGF 56
Query: 97 QGQNPARQASIKANIPNE---VPASLVNMLCGSG 127
Q AS+ PA+ V C +G
Sbjct: 57 SPQ--DFPASLVLQADPALRFKPATRVENACATG 88
>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General
function prediction only].
Length = 340
Score = 28.0 bits (63), Expect = 2.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 37 DNDVVIVSAARTPIGSFLGSLSELKAH 63
+ V+VSAA +GS +G +++LK
Sbjct: 150 AGETVVVSAAAGAVGSVVGQIAKLKGC 176
>gnl|CDD|178347 PLN02746, PLN02746, hydroxymethylglutaryl-CoA lyase.
Length = 347
Score = 28.2 bits (63), Expect = 2.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 108 KANIPNEVPASLVNMLCGSGLKSVTLTS 135
K +P V L+ L SGL V TS
Sbjct: 62 KNIVPTSVKVELIQRLVSSGLPVVEATS 89
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 28.1 bits (63), Expect = 2.3
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 13/65 (20%)
Query: 67 STAIKEVLKRANVLPNEISEVIL--GQALTAG----------QGQNP-ARQASIKANIPN 113
+ + + +A + +I EV+L G A T + A KA P+
Sbjct: 315 AAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYLFPETTTITAPITVSKALDPS 374
Query: 114 EVPAS 118
E+ A
Sbjct: 375 ELVAR 379
>gnl|CDD|236265 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 406
Score = 27.8 bits (62), Expect = 2.5
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 21/88 (23%)
Query: 65 LGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQNPARQASIKANI------------P 112
LG A +E +K A LP E+ G + +G G P +I+ N P
Sbjct: 75 LGLKAAREAMKDAGFLPEELDAERFGVSSASGIGGLP----NIEKNSIICFEKGPRKISP 130
Query: 113 NEVPASLVNMLCG-----SGLKSVTLTS 135
+P++LVNML G GLK L+S
Sbjct: 131 FFIPSALVNMLGGFISIEHGLKGPNLSS 158
>gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
carrier protein (SCP)-x isoform and related proteins;
SCP-2 has multiple roles in intracellular lipid
circulation and metabolism. The N-terminal presequence
in the SCP-x isoform represents a peroxisomal
3-ketacyl-Coa thiolase specific for branched-chain acyl
CoAs, which is proteolytically cleaved from the sterol
carrier protein.
Length = 375
Score = 28.0 bits (63), Expect = 2.5
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 55 GSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQNPARQASIKANIPNE 114
G S+ +L + A + L A + P +I V++G A P + +
Sbjct: 9 GRRSDRSPLELAAEAARAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAEYLGLLG- 67
Query: 115 VPASLVNMLCGSGL 128
PA+ V SG
Sbjct: 68 KPATRVEAAGASGS 81
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 27.6 bits (62), Expect = 3.0
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 69 AIKEVLKRANVLPNEISEVIL 89
++ VL A + P +I V+L
Sbjct: 308 LVERVLADAGLKPEDIDAVLL 328
>gnl|CDD|165471 PHA03204, PHA03204, uracil DNA glycosylase; Provisional.
Length = 322
Score = 27.2 bits (60), Expect = 3.5
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 81 PNEISEVILGQALTAGQGQNPARQASIKANIPNEVPASLVNML 123
P+ + VI+GQ A GQ S+K P +P SL N+L
Sbjct: 151 PDHVKVVIVGQDPYANPGQAHGLAFSVKPGSP--IPPSLKNIL 191
>gnl|CDD|236440 PRK09268, PRK09268, acetyl-CoA acetyltransferase; Provisional.
Length = 427
Score = 27.2 bits (61), Expect = 4.2
Identities = 21/95 (22%), Positives = 42/95 (44%)
Query: 39 DVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQG 98
V I+ R P G+ ++ D+ + A+ ++ R + + EV+ G L +
Sbjct: 8 RVAILGGNRIPFARSNGAYADASNQDMLTAALDGLVDRFGLQGERLGEVVAGAVLKHSRD 67
Query: 99 QNPARQASIKANIPNEVPASLVNMLCGSGLKSVTL 133
N R+ + + + PA + CG+GL++ L
Sbjct: 68 FNLTRECVLGSALSPYTPAYDLQQACGTGLEAAIL 102
>gnl|CDD|183606 PRK12578, PRK12578, acetyl-CoA acetyltransferase; Provisional.
Length = 385
Score = 27.1 bits (60), Expect = 4.4
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 52 SFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQGQNPARQASIKANI 111
S G ++ +L +IKE L A V +I V++G G PA + + +
Sbjct: 11 SKFGRRDDVSVQELAWESIKEALNDAGVSQTDIELVVVGSTAYRGIELYPAPIVAEYSGL 70
Query: 112 PNEVPASLVNMLCGSGLKSV 131
+VP V +C +GL +
Sbjct: 71 TGKVPLR-VEAMCATGLAAS 89
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 27.0 bits (60), Expect = 5.6
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 59 ELKAHDLGST--AIKEVLKRANVLPNEISEVILGQALTAGQGQNPARQASIKANIPNEVP 116
EL + +T +++ LK A + P +I VI L G + PA Q +I+ + P
Sbjct: 301 ELTKDLVEATIEPMQQALKDAGLKPEDIDRVI----LVGGSTRIPAVQEAIQKFFGGKQP 356
Query: 117 ASLVN 121
VN
Sbjct: 357 DRSVN 361
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 26.8 bits (60), Expect = 6.2
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 70 IKEVLKRANVLPNEISEVILGQALTAGQGQNPARQASIK 108
+K+ LK A + P++I EVI L G + PA Q +K
Sbjct: 314 VKQALKDAKLSPSDIDEVI----LVGGSTRIPAVQELVK 348
>gnl|CDD|234329 TIGR03722, arch_KAE1, universal archaeal protein Kae1. This family
represents the archaeal protein Kae1. Its partner Bud32
is fused with it in about half of the known archaeal
genomes. The pair, which appears universal in the
archaea, corresponds to EKC/KEOPS complex in eukaryotes.
A recent characterization of the member from Pyrococcus
abyssi, as an iron-binding, atypical DNA-binding protein
with an apurinic lyase activity, challenges the common
annotation of close homologs as O-sialoglycoprotein
endopeptidase. The latter annotation is based on a
characterized protein from the bacterium Pasteurella
haemolytica [DNA metabolism, DNA replication,
recombination, and repair].
Length = 322
Score = 26.5 bits (59), Expect = 6.4
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 12/51 (23%)
Query: 70 IKEVLKRANVLPNEISEVILGQALTAGQGQNP--------ARQASIKANIP 112
IKE L+ A + +I V A + G G P AR ++K N P
Sbjct: 53 IKEALEEAGISIEDIDAV----AFSQGPGLGPCLRVGATAARALALKLNKP 99
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 26.6 bits (59), Expect = 6.7
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 69 AIKEVLKRANVLPNEISEVILGQALTAGQGQNPARQASIKANIPN 113
I++VL++AN+ +I++V+ L G + P Q IK P+
Sbjct: 313 PIEKVLEQANLTKTDINKVV----LCGGSSRIPKLQQLIKDLFPS 353
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 26.4 bits (59), Expect = 6.8
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 59 ELKAHDLGSTA---IKEVLKRANVLPNEISEVIL 89
E DL A IK+ L+ A + +I V L
Sbjct: 313 EELCADLFERAVAPIKKALESAGLTLKDIDSVEL 346
>gnl|CDD|184878 PRK14878, PRK14878, UGMP family protein; Provisional.
Length = 323
Score = 26.4 bits (59), Expect = 7.3
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
Query: 67 STAIKEVLKRANVLPNEISEVILGQALTAGQGQNP--------ARQASIKANIP 112
+++ L++A + +I V A++ G G P AR ++K N P
Sbjct: 49 PELLRKALEKAGISIEDIDAV----AVSQGPGLGPALRVGATAARALALKYNKP 98
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 26.6 bits (59), Expect = 7.7
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 71 KEVLKRANVLPNEISEVILGQALTAGQGQNPARQASIKANIPNEVPASLVN 121
K+ LK A V ++I EVI L G + P Q ++K I + P+ VN
Sbjct: 316 KKALKDAGVSKSDIGEVI----LVGGMTRMPKVQETVK-EIFGKEPSKGVN 361
>gnl|CDD|225950 COG3416, COG3416, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 233
Score = 26.0 bits (57), Expect = 8.7
Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 67 STAIKEVLKRANVLPNEI--SEVILGQALTAGQGQNPARQASIKANIPNEVPASLVNMLC 124
ST IKE+ KR +L S L A G Q PA A+ P S +
Sbjct: 61 STQIKELEKRIAILQAGEAGSGSFLSNAFKWGTPQEPAPPANAPPPKEPAAPPSWRSSPA 120
Query: 125 GS 126
G
Sbjct: 121 GP 122
>gnl|CDD|234782 PRK00499, rnpA, ribonuclease P; Reviewed.
Length = 114
Score = 25.5 bits (57), Expect = 9.5
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 10/54 (18%)
Query: 33 MVLSDNDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISE 86
+ D V++ AR P +EL ++ ++ VLK A +L +
Sbjct: 71 EIKKGYDFVVI--ARKPA-------AELDYKEIKK-SLIHVLKLAKLLKKKEKS 114
>gnl|CDD|233703 TIGR02063, RNase_R, ribonuclease R. This family consists of an
exoribonuclease, ribonuclease R, also called VacB. It is
one of the eight exoribonucleases reported in E. coli
and is broadly distributed throughout the bacteria. In
E. coli, double mutants of this protein and
polynucleotide phosphorylase are not viable. Scoring
between trusted and noise cutoffs to the model are
shorter, divergent forms from the Chlamydiae, and
divergent forms from the Campylobacterales (including
Helicobacter pylori) and Leptospira interrogans
[Transcription, Degradation of RNA].
Length = 709
Score = 26.1 bits (58), Expect = 9.7
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 17/69 (24%)
Query: 35 LSDNDVVIV------SAARTPIGSF---LG--------SLSELKAHDLGSTAIKEVLKRA 77
+ D V+V R IG LG L ++ H + +EVL A
Sbjct: 172 AEEGDKVLVEITKYPDRNRPAIGKVVEILGHADDPGIDILIIIRKHGIPYEFPEEVLDEA 231
Query: 78 NVLPNEISE 86
+P E+ E
Sbjct: 232 AKIPEEVPE 240
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.375
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,825,233
Number of extensions: 703710
Number of successful extensions: 938
Number of sequences better than 10.0: 1
Number of HSP's gapped: 910
Number of HSP's successfully gapped: 79
Length of query: 160
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 71
Effective length of database: 6,990,096
Effective search space: 496296816
Effective search space used: 496296816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)