RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4156
         (160 letters)



>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
           1.55A {Homo sapiens} PDB: 1wl5_A
          Length = 397

 Score =  183 bits (466), Expect = 2e-57
 Identities = 62/101 (61%), Positives = 71/101 (70%)

Query: 33  MVLSDNDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQA 92
           M    + VVIVSAART IGSF G+L+ +   DLGST IKEVLKRA V P ++SEVI G  
Sbjct: 1   MNAGSDPVVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHV 60

Query: 93  LTAGQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTL 133
           L AG GQNP RQAS+ A IP  VPA    M+CGSGLK+V L
Sbjct: 61  LAAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCL 101


>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
           thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
           PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
           2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
           2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
           ...
          Length = 392

 Score =  179 bits (456), Expect = 5e-56
 Identities = 55/98 (56%), Positives = 71/98 (72%)

Query: 36  SDNDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTA 95
           S   +VI SAART +GSF G+ +   AH+LG+T I  VL+RA V   E++EVILGQ L A
Sbjct: 1   STPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPA 60

Query: 96  GQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTL 133
           G+GQNPARQA++KA +P E  A  +N LCGSGL++V L
Sbjct: 61  GEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVAL 98


>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
           2.00A {Clostridium difficile}
          Length = 395

 Score =  178 bits (455), Expect = 1e-55
 Identities = 55/96 (57%), Positives = 63/96 (65%)

Query: 38  NDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQ 97
            DVVIVSA RTPIGSF G      A  LG+ A+KE + R  +  +EI EVI+G  L  G 
Sbjct: 5   KDVVIVSAVRTPIGSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGL 64

Query: 98  GQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTL 133
           GQN ARQ +I A IPN VP+  VN LCGSGLKSV L
Sbjct: 65  GQNVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQL 100


>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
           structural genomics of infec diseases, csgid, thiolase;
           1.25A {Clostridium difficile}
          Length = 396

 Score =  178 bits (453), Expect = 2e-55
 Identities = 53/101 (52%), Positives = 72/101 (71%)

Query: 33  MVLSDNDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQA 92
            V++  +VVI SAART +GSF G+   + A +LG TA KE +KRAN+ P+ I E +LG  
Sbjct: 2   GVMNMREVVIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGV 61

Query: 93  LTAGQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTL 133
           LTAG GQN ARQ ++ A IP E PA  +N++CGSGL+SV++
Sbjct: 62  LTAGLGQNIARQIALGAGIPVEKPAMTINIVCGSGLRSVSM 102


>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
           chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
           HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
           2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
          Length = 395

 Score =  175 bits (446), Expect = 2e-54
 Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 4/105 (3%)

Query: 29  TRSTMVLSDNDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVI 88
           ++ T+     +VVIVSA RTPIGSFLGSLS L A  LGS AI+  +++A +   E+ E  
Sbjct: 3   SKPTL----KEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAY 58

Query: 89  LGQALTAGQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTL 133
           +G  L  G+GQ P RQA + A +P   P + +N +C SG+K++ +
Sbjct: 59  MGNVLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMM 103


>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
           for structural genomics O infectious diseases, alpha
           beta; HET: CSO; 1.70A {Bacillus anthracis}
          Length = 394

 Score =  172 bits (438), Expect = 3e-53
 Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 1/104 (0%)

Query: 38  NDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAGQ 97
           ++VVI +A R+PIG+F G+L  +   +L    ++E +KR  V P+E+ EVILG  +    
Sbjct: 5   HNVVITAAVRSPIGTFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQRTD 64

Query: 98  GQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQQVLL 141
             N AR A++ A  P+ V    +   C SG++++   +  Q+ L
Sbjct: 65  EANTARTAALAAGFPDTVTGYTIQRQCSSGMQAIMSAA-MQIQL 107


>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
           structural genomics/proteomics initiative, RSGI; 3.00A
           {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
          Length = 401

 Score =  156 bits (396), Expect = 6e-47
 Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 1/101 (0%)

Query: 38  NDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAG- 96
            +  IV A RTPIG   G+L+ ++  DL + A+  ++ R+ V   E+ +V  G A  AG 
Sbjct: 2   PEAWIVEAVRTPIGKHGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGE 61

Query: 97  QGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
             +N AR A + A  P EV    VN LCGSGL++V   +R 
Sbjct: 62  DNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARA 102


>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
           {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
           1pxt_A
          Length = 393

 Score =  149 bits (379), Expect = 2e-44
 Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 5/108 (4%)

Query: 31  STMVLSDNDVVIVSAARTPIG-SFLGSLSELKAHDLGSTAIKEVLKR----ANVLPNEIS 85
           S +     DVVIV+A R+ IG  F G+  ++    L    + E + R         N I 
Sbjct: 3   SLLEKRPEDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIE 62

Query: 86  EVILGQALTAGQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTL 133
           EV  G  L  G G    R A + + IP   P   +N  C SGL +V  
Sbjct: 63  EVACGNVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVND 110


>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
           structural genomics, structural genom consortium, SGC,
           transferase; 2.55A {Homo sapiens}
          Length = 418

 Score =  144 bits (366), Expect = 2e-42
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 36  SDNDVVIVSAARTPIG-SFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALT 94
           S  DVV+V   RT I  +  G   +    +L S  +  VLK  N+ P ++ ++ +G  L 
Sbjct: 28  SAADVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQ 87

Query: 95  AGQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
            G G   AR A   ++IP  VP S VN  C SGL++V   +  
Sbjct: 88  PGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGG 130


>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
           acid metabolism, oxylipin biosynthesis, plant lipid
           metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
           2c7z_A 2wua_A
          Length = 442

 Score =  135 bits (343), Expect = 6e-39
 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 2/104 (1%)

Query: 36  SDNDVVIVSAARTPIG-SFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALT 94
             +DVVIV+A RTP+  S  G+  +    DL +  ++ ++++ N+ P+E+ ++++G  L 
Sbjct: 28  YGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLA 87

Query: 95  AG-QGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
            G Q  +  R A+  A  P  V    VN  C SGL++V   +  
Sbjct: 88  PGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAA 131


>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
           lyase, oxidoreductase/transferase complex, lyase; HET:
           ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
           c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
          Length = 390

 Score =  134 bits (339), Expect = 1e-38
 Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 3/106 (2%)

Query: 35  LSDNDVVIVSAARTPIGSFL-GSLSELKAHDLGSTAIKEVLKR-ANVLPNEISEVILGQA 92
           L+  DVVIV   RTP+G    G     +A D+ +  I +VL+R + V P E+ +VI G  
Sbjct: 2   LNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCV 61

Query: 93  LTAG-QGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
                QG N AR AS+   IP+   A  V+ LCGS + ++   ++ 
Sbjct: 62  NQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQA 107


>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
           IDP01071, acyltransferase, cytoplasm, fatty acid
           metabolism; 1.70A {Salmonella typhimurium}
          Length = 387

 Score =  124 bits (314), Expect = 5e-35
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 3/103 (2%)

Query: 38  NDVVIVSAARTPIG-SFLGSLSELKAHDLGSTAIKEVLKR-ANVLPNEISEVILGQALTA 95
             VVIV A RTP+G S  G+   ++A DL +  ++ +L R  ++    + ++  G     
Sbjct: 2   EQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPSLTAATLDDIYWGCVQQT 61

Query: 96  G-QGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
             QG N AR A++ A IP+ VPA  VN LCGS ++++   +R 
Sbjct: 62  LEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARM 104


>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
           biostructures, structu genomics; 2.20A {Mycobacterium
           avium}
          Length = 407

 Score = 93.4 bits (233), Expect = 3e-23
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 38  NDVVIVSAARTPIG-SFLGSLSELKAHDLGSTAIKEVLKRANVL-PNEISEVILGQALTA 95
            +  I  A RTP G    GSL+E+K  +L    + E+ +R   L    IS++ILG     
Sbjct: 7   EEAFIYEAIRTPRGKQKNGSLTEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVVSPV 66

Query: 96  G-QGQNPARQASIKANIPNEVPASLVNMLCGSGLKSV 131
           G QG + AR A + A +P       +N  C SGL++V
Sbjct: 67  GDQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAV 103


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 32.6 bits (73), Expect = 0.026
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 104 QASIKANIPNEVPASLVN 121
           QAS+K    +  PA  + 
Sbjct: 26  QASLKLYADDSAPALAIK 43


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.1 bits (75), Expect = 0.035
 Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 59/183 (32%)

Query: 9    VIVSGDVILLTIWFIFVTGFT-RSTMVLSDNDVVIVSAAR----TPIGS-FLG-SLSELK 61
                 +  LL+      T FT  +  ++           +     P  + F G SL E  
Sbjct: 1717 YTFRSEKGLLSA-----TQFTQPALTLME---KAAFEDLKSKGLIPADATFAGHSLGEYA 1768

Query: 62   AHDLGSTA--------IKEVLKRANVLPNEISEVILGQALTAGQGQNPAR------QASI 107
            A  L S A        ++ V  R   +   +    LG++       NP R      Q ++
Sbjct: 1769 A--LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826

Query: 108  KA------------------NIPN-------EVPA--SLVNMLCGSGLKSVTLTSRQQVL 140
            +                   N+ N       ++ A  ++ N+L    L+ + +    Q  
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI-IELQKS 1885

Query: 141  LTL 143
            L+L
Sbjct: 1886 LSL 1888



 Score = 31.6 bits (71), Expect = 0.11
 Identities = 37/199 (18%), Positives = 56/199 (28%), Gaps = 74/199 (37%)

Query: 14  DVILLTIWFIFVTGFTRSTMVLSDNDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEV 73
           D +L      F   +      L  ND          I +    L  L+ +D      KE+
Sbjct: 81  DQVLNLCLTEFENCY------LEGND----------IHALAAKL--LQENDTTLVKTKEL 122

Query: 74  LK---RANVLPNE----ISEVILGQALTA----------GQGQNPA-----R------QA 105
           +K    A ++        S   L +A+            GQG         R        
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182

Query: 106 SIKANIPNEVPASLVNMLCGSGLKSVTLTSRQQVLLTLHWLGN----------------- 148
            +   I  +  A  ++ L  + L +  +    Q L  L WL N                 
Sbjct: 183 LVGDLI--KFSAETLSELIRTTLDAEKV--FTQGLNILEWLENPSNTPDKDYLLSIPISC 238

Query: 149 ---G----AQYHITADAHG 160
              G    A Y +TA   G
Sbjct: 239 PLIGVIQLAHYVVTAKLLG 257



 Score = 25.8 bits (56), Expect = 9.2
 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 25/101 (24%)

Query: 67   STAIKEVLKRANVLPNE-----ISEVIL--------------GQAL----TAGQGQNPAR 103
            S A ++V  RA+    +     I ++++              G+ +    +A   +    
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD 1698

Query: 104  QASIKANIPNEVPASLVNMLCGSGLKSV-TLTSRQQVLLTL 143
                   I  E+     +       K + + T   Q  LTL
Sbjct: 1699 GKLKTEKIFKEINEHSTS-YTFRSEKGLLSATQFTQPALTL 1738


>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A
           {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P
           1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P
           3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P
           1i94_P* ...
          Length = 83

 Score = 25.6 bits (57), Expect = 3.3
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 143 LHWLGNGAQ 151
            +WL  GAQ
Sbjct: 57  RYWLSVGAQ 65


>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
           {Aquifex aeolicus} SCOP: d.27.1.1
          Length = 112

 Score = 25.8 bits (57), Expect = 4.5
 Identities = 2/9 (22%), Positives = 4/9 (44%)

Query: 143 LHWLGNGAQ 151
             W+  G +
Sbjct: 56  KEWVLKGVE 64


>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast
           ribosome, ribonucleoprotein particle, macromolecular
           complex; 9.40A {Spinacea oleracea}
          Length = 88

 Score = 25.2 bits (56), Expect = 4.6
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 143 LHWLGNGAQ 151
           L +L  GAQ
Sbjct: 54  LDFLEKGAQ 62


>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics,
           PSI-2, protein structure initiative; HET: MSE; 1.45A
           {Rhodopseudomonas palustris}
          Length = 392

 Score = 26.1 bits (58), Expect = 6.6
 Identities = 5/27 (18%), Positives = 12/27 (44%)

Query: 64  DLGSTAIKEVLKRANVLPNEISEVILG 90
           ++  TA ++ ++R       I  V+  
Sbjct: 119 EMAVTAAEQAIERWGKPRERIGAVLCA 145


>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
          biosynthesis, transferase; 2.00A {Staphylococcus aureus
          subsp} PDB: 3il7_A
          Length = 313

 Score = 25.5 bits (57), Expect = 8.7
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 64 DLGSTAIKEVLKRANVLPNEISEVILG 90
          DL   A  + +  A + P +I  +I+ 
Sbjct: 53 DLAYEASVKAIADAGIQPEDIDMIIVA 79


>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
           protein folding, acetylation, ATP-binding, cell inner
           membrane; NMR {Escherichia coli}
          Length = 605

 Score = 25.7 bits (57), Expect = 8.7
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 71  KEVLKRANVLPNEISEVILGQALTAGQGQNPARQASIK 108
           K  L+ A +  ++I +VI    L  GQ + P  Q  + 
Sbjct: 321 KVALQDAGLSVSDIDDVI----LVGGQTRMPMVQKKVA 354


>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
           coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
           coli} SCOP: c.55.1.1 c.55.1.1
          Length = 383

 Score = 25.6 bits (57), Expect = 9.2
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 71  KEVLKRANVLPNEISEVILGQALTAGQGQNPARQASIK 108
           K  L+ A +  ++I +VI    L  GQ + P  Q  + 
Sbjct: 321 KVALQDAGLSVSDIDDVI----LVGGQTRMPMVQKKVA 354


>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis,
          beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus
          thermophilus} SCOP: c.95.1.2 c.95.1.2
          Length = 322

 Score = 25.5 bits (57), Expect = 9.4
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 64 DLGSTAIKEVLKRANVLPNEISEVILG 90
          DL   A++++L+R       +  VI+ 
Sbjct: 52 DLAFKAVEDLLRRHPGALEGVDAVIVA 78


>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A
           {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
          Length = 176

 Score = 25.3 bits (56), Expect = 9.9
 Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 6/43 (13%)

Query: 18  LTIWFIFVTGFTRSTMVLSDNDVVIVSAARTPIGSFLGSLSEL 60
           + I  +   G  R  +    ++V++       +G   G+ +E+
Sbjct: 88  VDIPIVTGLGSARDNINALSSNVLVA------VGMGPGTAAEV 124


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0805    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,273,975
Number of extensions: 126397
Number of successful extensions: 390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 59
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)