RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4156
         (160 letters)



>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera
           [TaxId: 350]}
          Length = 268

 Score =  111 bits (279), Expect = 2e-31
 Identities = 57/125 (45%), Positives = 77/125 (61%)

Query: 36  SDNDVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTA 95
           S   +VI SAART +GSF G+ +   AH+LG+T I  VL+RA V   E++EVILGQ L A
Sbjct: 1   STPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPA 60

Query: 96  GQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQQVLLTLHWLGNGAQYHIT 155
           G+GQNPARQA++KA +P E  A  +N L GSGL++V L  +Q        +  G    ++
Sbjct: 61  GEGQNPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMS 120

Query: 156 ADAHG 160
              H 
Sbjct: 121 MAPHC 125


>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
           thermophilus [TaxId: 274]}
          Length = 273

 Score =  106 bits (266), Expect = 2e-29
 Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 1/100 (1%)

Query: 39  DVVIVSAARTPIGSFLGSLSELKAHDLGSTAIKEVLKRANVLPNEISEVILGQALTAG-Q 97
           +  IV A RTPIG   G+L+ ++  DL + A+  ++ R+ V   E+ +V  G A  AG  
Sbjct: 1   EAWIVEAVRTPIGKHGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGED 60

Query: 98  GQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQ 137
            +N AR A + A  P EV    VN LCGSGL++V   +R 
Sbjct: 61  NRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARA 100


>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 269

 Score = 83.4 bits (205), Expect = 1e-20
 Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 6/137 (4%)

Query: 30  RSTMVLSDNDVVIVSAARTPIG-SFLGSLSELKAHDLGSTAIKEVLKRA----NVLPNEI 84
            S +     DVVIV+A R+ IG  F G+  ++    L    + E + R         N I
Sbjct: 2   NSLLEKRPEDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLI 61

Query: 85  SEVILGQALTAGQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQQVLLTLH 144
            EV  G  L  G G    R A + + IP   P   +N  C SGL +V   + +  +  + 
Sbjct: 62  EEVACGNVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQID 121

Query: 145 W-LGNGAQYHITADAHG 160
             L  G +       + 
Sbjct: 122 IGLALGVESMTNNYKNV 138


>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit
           (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
           296]}
          Length = 262

 Score = 81.1 bits (199), Expect = 8e-20
 Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 35  LSDNDVVIVSAARTPIGSFLGSLS-ELKAHDLGSTAIKEVLKR-ANVLPNEISEVIL-GQ 91
           L+  DVVIV   RTP+G   G +    +A D+ +  I +VL+R + V P E+ +VI    
Sbjct: 2   LNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCV 61

Query: 92  ALTAGQGQNPARQASIKANIPNEVPASLVNMLCGSGLKSVTLTSRQQVLLTLHWLGNGAQ 151
             T  QG N AR AS+   IP+   A  V+ LCGS + ++   ++  +         G  
Sbjct: 62  NQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGV 121


>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
           fragment {Cow (Bos taurus) [TaxId: 9913]}
          Length = 193

 Score = 26.1 bits (57), Expect = 1.9
 Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 68  TAIKEVLKRANVLPNEISEVILGQALTAGQGQNPARQASIKANIPNEVPASLVN 121
             +++ L+ A +  ++I +++    L  G  + P  Q  ++     +     +N
Sbjct: 127 DPVEKALRDAKLDKSQIHDIV----LVGGSTRIPKIQKLLQDFFNGKELNKSIN 176


>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli
           [TaxId: 562]}
          Length = 78

 Score = 24.3 bits (53), Expect = 3.5
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 143 LHWLGNGAQ 151
            HW+G GA 
Sbjct: 58  AHWVGQGAT 66


>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 101

 Score = 24.4 bits (53), Expect = 3.7
 Identities = 2/9 (22%), Positives = 4/9 (44%)

Query: 143 LHWLGNGAQ 151
             W+  G +
Sbjct: 55  KEWVLKGVE 63


>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus
           thermophilus [TaxId: 274]}
          Length = 83

 Score = 24.2 bits (53), Expect = 3.9
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 143 LHWLGNGAQ 151
            +WL  GAQ
Sbjct: 57  RYWLSVGAQ 65


>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 25.3 bits (54), Expect = 4.4
 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 6/46 (13%)

Query: 15 VILLTIWFIFVTGFTRSTMVLSDNDVVIVS--AARTPIGSFLGSLS 58
          ++   ++ + + GF  + + L     V V     RTP+   L +L+
Sbjct: 39 MLAAYMFLLIMLGFPINFLTL----YVTVQHKKLRTPLNYILLNLA 80


>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide
           chain release factor subunit 1, ERF1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 134

 Score = 23.5 bits (51), Expect = 9.3
 Identities = 9/44 (20%), Positives = 18/44 (40%)

Query: 66  GSTAIKEVLKRANVLPNEISEVILGQALTAGQGQNPARQASIKA 109
           GS   K  L ++++    +   +L     +  G+N   QA   +
Sbjct: 86  GSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELS 129


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 524,746
Number of extensions: 21038
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 10
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)