BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4157
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 253 bits (646), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 121/218 (55%), Positives = 159/218 (72%), Gaps = 2/218 (0%)
Query: 210 LARIAIKSGDATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHM 269
LA +I GD++ +VAGG E MS+APH+ +R G+K+ + + DS++ DGLTDAFHN HM
Sbjct: 101 LAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHM 160
Query: 270 GITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDE 329
GITAEN+AKKW +SR +QD+ A SQ +T AQ+ G+FD+EIVPV++STRKG + V DE
Sbjct: 161 GITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDE 220
Query: 330 YPKANTTVEALQKLRPVFQKD--GTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARI 387
+P+ + +EA+ KL+P F D GTVT NASGINDGAAAV+LM A R + PLARI
Sbjct: 221 FPRHGSNIEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARI 280
Query: 388 VAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
V+ S GVEP++MG GPIPA+ + KAGWS E+V F
Sbjct: 281 VSWSQVGVEPSIMGIGPIPAIKQAVTKAGWSLEDVDIF 318
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/139 (56%), Positives = 107/139 (76%), Gaps = 2/139 (1%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS+APH+ +R G+K+ + + DS++ DGLTDAFHN HMGITAEN+AKKW +SR +QD+
Sbjct: 122 MSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDKV 181
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ +T AQ+ G+FD+EIVPV++STRKG + V DE+P+ ++++A+ KL+P F D
Sbjct: 182 AVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKPYFLTD 241
Query: 121 --GTVTAGNASGINDGAAA 137
GTVT NASGINDGAAA
Sbjct: 242 GTGTVTPANASGINDGAAA 260
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 162/248 (65%), Gaps = 10/248 (4%)
Query: 170 RPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAIVAGGQE 229
R K G A G+N L S RA A +Q +A +GDA+ IVAGG E
Sbjct: 65 RQAAMKAGVPQEATAWGMNQ-----LCGSGLRAVALGMQQIA-----TGDASIIVAGGME 114
Query: 230 CMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 289
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD
Sbjct: 115 SMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDA 174
Query: 290 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKLRPVFQK 349
+A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + T++++ KLRP F K
Sbjct: 175 FAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDK 234
Query: 350 DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVN 409
+GTVTAGNASG+NDGAAA LLMS A R IQPL RIV+ ++ GV+P +MGTGPIPA
Sbjct: 235 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 294
Query: 410 AVLAKAGW 417
L +AGW
Sbjct: 295 KALERAGW 302
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 116 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 175
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 176 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 235
Query: 121 GTVTAGNASGINDGAAAGKLY 141
GTVTAGNASG+NDGAAA L
Sbjct: 236 GTVTAGNASGLNDGAAAALLM 256
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 162/248 (65%), Gaps = 10/248 (4%)
Query: 170 RPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAIVAGGQE 229
R K G A G+N L S RA A +Q +A +GDA+ IVAGG E
Sbjct: 68 RQAAMKAGVPQEATAWGMNQ-----LCGSGLRAVALGMQQIA-----TGDASIIVAGGME 117
Query: 230 CMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 289
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD
Sbjct: 118 SMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDA 177
Query: 290 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKLRPVFQK 349
+A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + T++++ KLRP F K
Sbjct: 178 FAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 350 DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVN 409
+GTVTAGNASG+NDGAAA LLMS A R IQPL RIV+ ++ GV+P +MGTGPIPA
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 410 AVLAKAGW 417
L +AGW
Sbjct: 298 KALERAGW 305
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 119 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 121 GTVTAGNASGINDGAAAGKLY 141
GTVTAGNASG+NDGAAA L
Sbjct: 239 GTVTAGNASGLNDGAAAALLM 259
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 162/248 (65%), Gaps = 10/248 (4%)
Query: 170 RPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAIVAGGQE 229
R K G A G+N L S RA A +Q +A +GDA+ IVAGG E
Sbjct: 68 RQAAMKAGVPQEATAWGMNQ-----LCGSGLRAVALGMQQIA-----TGDASIIVAGGME 117
Query: 230 CMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 289
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD
Sbjct: 118 SMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDA 177
Query: 290 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKLRPVFQK 349
+A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + T++++ KLRP F K
Sbjct: 178 FAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 350 DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVN 409
+GTVTAGNASG+NDGAAA LLMS A R IQPL RIV+ ++ GV+P +MGTGPIPA
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 410 AVLAKAGW 417
L +AGW
Sbjct: 298 KALERAGW 305
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/140 (55%), Positives = 102/140 (72%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 119 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 121 GTVTAGNASGINDGAAAGKL 140
GTVTAGNASG+NDGAAA L
Sbjct: 239 GTVTAGNASGLNDGAAAALL 258
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/254 (50%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 164 EALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAI 223
E R K G A G+N L S RA A +Q +A +GDA+ I
Sbjct: 62 EGANPARQAAMKAGVPQEATAWGMNQ-----LCGSGLRAVALGMQQIA-----TGDASII 111
Query: 224 VAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSIS 283
VAGG E MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +S
Sbjct: 112 VAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLS 171
Query: 284 RLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKL 343
R EQD +A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + T++++ KL
Sbjct: 172 RDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKL 231
Query: 344 RPVFQKDGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTG 403
RP F K+GTVTAGNASG+NDGAAA LLMS A R IQPL RIV+ ++ GV+P +MGTG
Sbjct: 232 RPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTG 291
Query: 404 PIPAVNAVLAKAGW 417
PIPA L +AGW
Sbjct: 292 PIPASRKALERAGW 305
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 119 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 121 GTVTAGNASGINDGAAAGKLY 141
GTVTAGNASG+NDGAAA L
Sbjct: 239 GTVTAGNASGLNDGAAAALLM 259
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 162/248 (65%), Gaps = 10/248 (4%)
Query: 170 RPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAIVAGGQE 229
R K G A G+N L S RA A +Q +A +GDA+ IVAGG E
Sbjct: 68 RQAAMKAGVPQEATAWGMNQ-----LCGSGLRAVALGMQQIA-----TGDASIIVAGGME 117
Query: 230 CMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 289
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD
Sbjct: 118 SMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDA 177
Query: 290 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKLRPVFQK 349
+A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + T++++ KLRP F K
Sbjct: 178 FAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 350 DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVN 409
+GTVTAGNASG+NDGAAA LLMS A R IQPL RIV+ ++ GV+P +MGTGPIPA
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 410 AVLAKAGW 417
L +AGW
Sbjct: 298 KALERAGW 305
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 119 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 121 GTVTAGNASGINDGAAAGKLY 141
GTVTAGNASG+NDGAAA L
Sbjct: 239 GTVTAGNASGLNDGAAAALLM 259
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 246 bits (627), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 162/248 (65%), Gaps = 10/248 (4%)
Query: 170 RPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAIVAGGQE 229
R K G A G+N L S RA A +Q +A +GDA+ IVAGG E
Sbjct: 68 RQAAMKAGVPQEATAWGMNQ-----LCGSGLRAVALGMQQIA-----TGDASIIVAGGME 117
Query: 230 CMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 289
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD
Sbjct: 118 SMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDA 177
Query: 290 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKLRPVFQK 349
+A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + T++++ KLRP F K
Sbjct: 178 FAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 350 DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVN 409
+GTVTAGNASG+NDGAAA LLMS A R IQPL RIV+ ++ GV+P +MGTGPIPA
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 410 AVLAKAGW 417
L +AGW
Sbjct: 298 KALERAGW 305
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 119 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 121 GTVTAGNASGINDGAAAGKLY 141
GTVTAGNASG+NDGAAA L
Sbjct: 239 GTVTAGNASGLNDGAAAALLM 259
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 246 bits (627), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 162/248 (65%), Gaps = 10/248 (4%)
Query: 170 RPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAIVAGGQE 229
R K G A G+N L S RA A +Q +A +GDA+ IVAGG E
Sbjct: 68 RQAAMKAGVPQEATAWGMNQ-----LCGSGLRAVALGMQQIA-----TGDASIIVAGGME 117
Query: 230 CMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 289
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD
Sbjct: 118 SMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDA 177
Query: 290 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKLRPVFQK 349
+A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + T++++ KLRP F K
Sbjct: 178 FAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 350 DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVN 409
+GTVTAGNASG+NDGAAA LLMS A R IQPL RIV+ ++ GV+P +MGTGPIPA
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 410 AVLAKAGW 417
L +AGW
Sbjct: 298 KALERAGW 305
Score = 171 bits (432), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 119 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 121 GTVTAGNASGINDGAAAGKLY 141
GTVTAGNASG+NDGAAA L
Sbjct: 239 GTVTAGNASGLNDGAAAALLM 259
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 246 bits (627), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 162/248 (65%), Gaps = 10/248 (4%)
Query: 170 RPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAIVAGGQE 229
R K G A G+N L S RA A +Q +A +GDA+ IVAGG E
Sbjct: 68 RQAAMKAGVPQEATAWGMNQ-----LCGSGLRAVALGMQQIA-----TGDASIIVAGGME 117
Query: 230 CMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 289
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD
Sbjct: 118 SMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDA 177
Query: 290 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKLRPVFQK 349
+A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + T++++ KLRP F K
Sbjct: 178 FAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 350 DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVN 409
+GTVTAGNASG+NDGAAA LLMS A R IQPL RIV+ ++ GV+P +MGTGPIPA
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 410 AVLAKAGW 417
L +AGW
Sbjct: 298 KALERAGW 305
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 119 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 121 GTVTAGNASGINDGAAAGKLY 141
GTVTAGNASG+NDGAAA L
Sbjct: 239 GTVTAGNASGLNDGAAAALLM 259
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 245 bits (626), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 162/248 (65%), Gaps = 10/248 (4%)
Query: 170 RPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAIVAGGQE 229
R K G A G+N L S RA A +Q +A +GDA+ IVAGG E
Sbjct: 68 RQAAMKAGVPQEATAWGMNQ-----LCGSGLRAVALGMQQIA-----TGDASIIVAGGME 117
Query: 230 CMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 289
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD
Sbjct: 118 SMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDA 177
Query: 290 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKLRPVFQK 349
+A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + T++++ KLRP F K
Sbjct: 178 FAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 350 DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVN 409
+GTVTAGNASG+NDGAAA LLMS A R IQPL RIV+ ++ GV+P +MGTGPIPA
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 410 AVLAKAGW 417
L +AGW
Sbjct: 298 KALERAGW 305
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 119 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 121 GTVTAGNASGINDGAAAGKLY 141
GTVTAGNASG+NDGAAA L
Sbjct: 239 GTVTAGNASGLNDGAAAALLM 259
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 245 bits (626), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 162/248 (65%), Gaps = 10/248 (4%)
Query: 170 RPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAIVAGGQE 229
R K G A G+N L S RA A +Q +A +GDA+ IVAGG E
Sbjct: 68 RQAAMKAGVPQEATAWGMNQ-----LCGSGLRAVALGMQQIA-----TGDASIIVAGGME 117
Query: 230 CMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 289
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD
Sbjct: 118 SMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDA 177
Query: 290 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKLRPVFQK 349
+A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + T++++ KLRP F K
Sbjct: 178 FAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 350 DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVN 409
+GTVTAGNASG+NDGAAA LLMS A R IQPL RIV+ ++ GV+P +MGTGPIPA
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 410 AVLAKAGW 417
L +AGW
Sbjct: 298 KALERAGW 305
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 119 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 121 GTVTAGNASGINDGAAAGKLY 141
GTVTAGNASG+NDGAAA L
Sbjct: 239 GTVTAGNASGLNDGAAAALLM 259
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 245 bits (626), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 162/248 (65%), Gaps = 10/248 (4%)
Query: 170 RPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAIVAGGQE 229
R K G A G+N L S RA A +Q +A +GDA+ IVAGG E
Sbjct: 65 RQAAMKAGVPQEATAWGMNQ-----LXGSGLRAVALGMQQIA-----TGDASIIVAGGME 114
Query: 230 CMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 289
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD
Sbjct: 115 SMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDA 174
Query: 290 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKLRPVFQK 349
+A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + T++++ KLRP F K
Sbjct: 175 FAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDK 234
Query: 350 DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVN 409
+GTVTAGNASG+NDGAAA LLMS A R IQPL RIV+ ++ GV+P +MGTGPIPA
Sbjct: 235 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 294
Query: 410 AVLAKAGW 417
L +AGW
Sbjct: 295 KALERAGW 302
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 116 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 175
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 176 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 235
Query: 121 GTVTAGNASGINDGAAAGKLY 141
GTVTAGNASG+NDGAAA L
Sbjct: 236 GTVTAGNASGLNDGAAAALLM 256
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 245 bits (625), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 162/248 (65%), Gaps = 10/248 (4%)
Query: 170 RPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAIVAGGQE 229
R K G A G+N L S RA A +Q +A +GDA+ IVAGG E
Sbjct: 68 RQAAMKAGVPQEATAWGMNQ-----LXGSGLRAVALGMQQIA-----TGDASIIVAGGME 117
Query: 230 CMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 289
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD
Sbjct: 118 SMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDA 177
Query: 290 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKLRPVFQK 349
+A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + T++++ KLRP F K
Sbjct: 178 FAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 350 DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVN 409
+GTVTAGNASG+NDGAAA LLMS A R IQPL RIV+ ++ GV+P +MGTGPIPA
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 410 AVLAKAGW 417
L +AGW
Sbjct: 298 KALERAGW 305
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 119 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 121 GTVTAGNASGINDGAAAGKLY 141
GTVTAGNASG+NDGAAA L
Sbjct: 239 GTVTAGNASGLNDGAAAALLM 259
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 245 bits (625), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 162/248 (65%), Gaps = 10/248 (4%)
Query: 170 RPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAIVAGGQE 229
R K G A G+N L S RA A +Q +A +GDA+ IVAGG E
Sbjct: 68 RQAAMKAGVPQEATAWGMNQ-----LXGSGLRAVALGMQQIA-----TGDASIIVAGGME 117
Query: 230 CMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 289
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD
Sbjct: 118 SMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDA 177
Query: 290 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKLRPVFQK 349
+A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + T++++ KLRP F K
Sbjct: 178 FAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 350 DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVN 409
+GTVTAGNASG+NDGAAA LLMS A R IQPL RIV+ ++ GV+P +MGTGPIPA
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 410 AVLAKAGW 417
L +AGW
Sbjct: 298 KALERAGW 305
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 119 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 121 GTVTAGNASGINDGAAAGKLY 141
GTVTAGNASG+NDGAAA L
Sbjct: 239 GTVTAGNASGLNDGAAAALLM 259
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 245 bits (625), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 162/248 (65%), Gaps = 10/248 (4%)
Query: 170 RPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAIVAGGQE 229
R K G A G+N L S RA A +Q +A +GDA+ IVAGG E
Sbjct: 68 RQAAMKAGVPQEATAWGMNQ-----LXGSGLRAVALGMQQIA-----TGDASIIVAGGME 117
Query: 230 CMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 289
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD
Sbjct: 118 SMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDA 177
Query: 290 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKLRPVFQK 349
+A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + T++++ KLRP F K
Sbjct: 178 FAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 350 DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVN 409
+GTVTAGNASG+NDGAAA LLMS A R IQPL RIV+ ++ GV+P +MGTGPIPA
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 410 AVLAKAGW 417
L +AGW
Sbjct: 298 KALERAGW 305
Score = 171 bits (432), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 119 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 121 GTVTAGNASGINDGAAAGKLY 141
GTVTAGNASG+NDGAAA L
Sbjct: 239 GTVTAGNASGLNDGAAAALLM 259
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 245 bits (625), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 162/248 (65%), Gaps = 10/248 (4%)
Query: 170 RPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAIVAGGQE 229
R K G A G+N L S RA A +Q +A +GDA+ IVAGG E
Sbjct: 68 RQAAMKAGVPQEATAWGMNQ-----LXGSGLRAVALGMQQIA-----TGDASIIVAGGME 117
Query: 230 CMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 289
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD
Sbjct: 118 SMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDA 177
Query: 290 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKLRPVFQK 349
+A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + T++++ KLRP F K
Sbjct: 178 FAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 350 DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVN 409
+GTVTAGNASG+NDGAAA LLMS A R IQPL RIV+ ++ GV+P +MGTGPIPA
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 410 AVLAKAGW 417
L +AGW
Sbjct: 298 KALERAGW 305
Score = 171 bits (432), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 119 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 121 GTVTAGNASGINDGAAAGKLY 141
GTVTAGNASG+NDGAAA L
Sbjct: 239 GTVTAGNASGLNDGAAAALLM 259
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 245 bits (625), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 162/248 (65%), Gaps = 10/248 (4%)
Query: 170 RPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAIVAGGQE 229
R K G A G+N L S RA A +Q +A +GDA+ IVAGG E
Sbjct: 68 RQAAMKAGVPQEATAWGMNQ-----LXGSGLRAVALGMQQIA-----TGDASIIVAGGME 117
Query: 230 CMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 289
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD
Sbjct: 118 SMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDA 177
Query: 290 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKLRPVFQK 349
+A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + T++++ KLRP F K
Sbjct: 178 FAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 350 DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVN 409
+GTVTAGNASG+NDGAAA LLMS A R IQPL RIV+ ++ GV+P +MGTGPIPA
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 410 AVLAKAGW 417
L +AGW
Sbjct: 298 KALERAGW 305
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 119 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 121 GTVTAGNASGINDGAAAGKLY 141
GTVTAGNASG+NDGAAA L
Sbjct: 239 GTVTAGNASGLNDGAAAALLM 259
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 244 bits (624), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 115/203 (56%), Positives = 147/203 (72%)
Query: 215 IKSGDATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAE 274
I +GDA+ IVAGG E MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAE
Sbjct: 103 IATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAE 162
Query: 275 NIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKAN 334
N+AK+W +SR EQD +A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY +
Sbjct: 163 NVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHG 222
Query: 335 TTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAG 394
T++++ KLRP F K+GTVTAGNASG+NDGAAA LLMS A R IQPL RIV+ ++ G
Sbjct: 223 ATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVG 282
Query: 395 VEPTLMGTGPIPAVNAVLAKAGW 417
V+P +MGTGPIPA L +AGW
Sbjct: 283 VDPKVMGTGPIPASRKALERAGW 305
Score = 171 bits (432), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 102/141 (72%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 119 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 121 GTVTAGNASGINDGAAAGKLY 141
GTVTAGNASG+NDGAAA L
Sbjct: 239 GTVTAGNASGLNDGAAAALLM 259
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 231 bits (588), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 117/209 (55%), Positives = 150/209 (71%), Gaps = 1/209 (0%)
Query: 215 IKSGDATAIVAGGQECMSQAPHVI-NIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITA 273
I GDA ++ GG E MS +P+++ + R G ++ DA DSM+ DGL+D F+N HMGITA
Sbjct: 107 IALGDADIMLVGGAENMSMSPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITA 166
Query: 274 ENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKA 333
ENIA++W+I+R EQDE A SQ K KAQ G FDEEIVPVVI RKGD VV KDEY K
Sbjct: 167 ENIAEQWNITREEQDELALASQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDKDEYIKP 226
Query: 334 NTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSA 393
TT+E L KLRP F+KDGTVTAGNASGINDGAA +++M+ + A+ I+PLA IV+ +A
Sbjct: 227 GTTMEKLAKLRPAFKKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTA 286
Query: 394 GVEPTLMGTGPIPAVNAVLAKAGWSKEEV 422
GV+P +MG GP+PA L A + E++
Sbjct: 287 GVDPKIMGYGPVPATKKALEAANMTIEDI 315
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/137 (63%), Positives = 105/137 (76%), Gaps = 1/137 (0%)
Query: 1 MSQAPHVI-NIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 59
MS +P+++ + R G ++ DA DSM+ DGL+D F+N HMGITAENIA++W+I+R EQDE
Sbjct: 123 MSMSPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQDE 182
Query: 60 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQK 119
A SQ K KAQ G FDEEIVPVVI RKGD VV KDEY K T+++ L KLRP F+K
Sbjct: 183 LALASQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDKDEYIKPGTTMEKLAKLRPAFKK 242
Query: 120 DGTVTAGNASGINDGAA 136
DGTVTAGNASGINDGAA
Sbjct: 243 DGTVTAGNASGINDGAA 259
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 146/215 (67%), Gaps = 2/215 (0%)
Query: 210 LARIAIKSGDATAIVAGGQECMSQAPHVI-NIRNGIKLNDAEMKDSMVFDGLTDAFHNIH 268
LA +I SG+ ++AGG E MSQAP+++ R G K+ + M DSM+ DGL DAF+ H
Sbjct: 100 LAAQSITSGENDVVIAGGTENMSQAPYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYH 159
Query: 269 MGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDV-VVAK 327
MGITAENIA K+ +R QD+ A +SQ K A + F EEIVPV + R+G + + K
Sbjct: 160 MGITAENIATKFEFTREMQDKLALESQNKAENAIKNNRFKEEIVPVDVLIRRGKIETIDK 219
Query: 328 DEYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARI 387
DEYPK T E L KL+P F+KDGTVTAGNASGINDGAA ++LMS + A I+PLA+I
Sbjct: 220 DEYPKLGMTFEGLSKLKPAFKKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKI 279
Query: 388 VAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEV 422
+ +SAGVEP +MGTGPIPA L KAG S ++
Sbjct: 280 KSYASAGVEPEVMGTGPIPATRKALKKAGLSINDI 314
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/138 (54%), Positives = 95/138 (68%), Gaps = 2/138 (1%)
Query: 1 MSQAPHVI-NIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 59
MSQAP+++ R G K+ + M DSM+ DGL DAF+ HMGITAENIA K+ +R QD+
Sbjct: 121 MSQAPYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYHMGITAENIATKFEFTREMQDK 180
Query: 60 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDV-VVAKDEYPKANTSVDALQKLRPVFQ 118
A +SQ K A + F EEIVPV + R+G + + KDEYPK + + L KL+P F+
Sbjct: 181 LALESQNKAENAIKNNRFKEEIVPVDVLIRRGKIETIDKDEYPKLGMTFEGLSKLKPAFK 240
Query: 119 KDGTVTAGNASGINDGAA 136
KDGTVTAGNASGINDGAA
Sbjct: 241 KDGTVTAGNASGINDGAA 258
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 204 bits (519), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 110/245 (44%), Positives = 160/245 (65%), Gaps = 7/245 (2%)
Query: 180 TAGNASGINDGAAAVLLMSYKRAQARNIQPL--ARIAIKSGDATAIVAGGQECMSQAPHV 237
TA A+G D V + +R + +Q + A + I+ G + +VAGG E MS +P+
Sbjct: 71 TAALAAGFPD---TVTGYTIQRQXSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSSPYA 127
Query: 238 I-NIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEYAYQSQV 296
+ R G +L E++D+ V++ L D H+I MG TAEN+ +++ I+R EQDE A +S
Sbjct: 128 LKQHRWGQRLQHGEIRDT-VWEVLEDPIHHIMMGETAENLVEQYEITREEQDEVALRSHT 186
Query: 297 KTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKLRPVFQKDGTVTAG 356
KA E GYFD++IVP+ I R+ +VV +KDE+P+A+ T E L L+P F+KDG+VTAG
Sbjct: 187 LALKAIESGYFDDQIVPITIKERRKEVVFSKDEHPRADITAEKLAGLKPAFRKDGSVTAG 246
Query: 357 NASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVNAVLAKAG 416
NASG+NDG+A ++LMS + A+ + +QPLARIV S AGV+P +MG GP PA+ L K
Sbjct: 247 NASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIGPAPAIRKGLEKVD 306
Query: 417 WSKEE 421
WS E+
Sbjct: 307 WSLED 311
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 97/137 (70%), Gaps = 2/137 (1%)
Query: 1 MSQAPHVI-NIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 59
MS +P+ + R G +L E++D+ V++ L D H+I MG TAEN+ +++ I+R EQDE
Sbjct: 121 MSSSPYALKQHRWGQRLQHGEIRDT-VWEVLEDPIHHIMMGETAENLVEQYEITREEQDE 179
Query: 60 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQK 119
A +S KA E GYFD++IVP+ I R+ +VV +KDE+P+A+ + + L L+P F+K
Sbjct: 180 VALRSHTLALKAIESGYFDDQIVPITIKERRKEVVFSKDEHPRADITAEKLAGLKPAFRK 239
Query: 120 DGTVTAGNASGINDGAA 136
DG+VTAGNASG+NDG+A
Sbjct: 240 DGSVTAGNASGLNDGSA 256
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 84/130 (64%), Gaps = 7/130 (5%)
Query: 145 RKGDVVVAKDEYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQA 204
R+ +VV +KDE+P+A+ T E L L+P F+KDG+VTAGNASG+NDG+A ++LMS ++A+
Sbjct: 209 RRKEVVFSKDEHPRADITAEKLAGLKPAFRKDGSVTAGNASGLNDGSAVLVLMSEEKAKE 268
Query: 205 RNIQPLARIAIKSGDATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAF 264
+ +QPLARI G + A V + AP IR G++ D ++D+ + + + +AF
Sbjct: 269 KGLQPLARIV---GYSVAGVDPKIMGIGPAP---AIRKGLEKVDWSLEDADLLE-INEAF 321
Query: 265 HNIHMGITAE 274
++ + E
Sbjct: 322 AAQYLAVEKE 331
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 132/218 (60%), Gaps = 4/218 (1%)
Query: 210 LARIAIKSGDATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHM 269
+A ++ G +VAGG E MS P+V+N R +++D +V DGLTD ++ IHM
Sbjct: 103 MASQSLMCGHQDVMVAGGMESMSNVPYVMN-RGSTPYGGVKLEDLIVKDGLTDVYNKIHM 161
Query: 270 GITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTR-KGDVVVAKD 328
G AEN AKK +I+R EQD YA S ++ A E G F E++PV ++ + + DVVV +D
Sbjct: 162 GSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKED 221
Query: 329 EYPKANTTVEALQKLRPVFQKD-GTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARI 387
E K + KL+ VFQK+ GTVTA NAS +NDGAAA++LM+ A+ N+ PLARI
Sbjct: 222 EEYK-RVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARI 280
Query: 388 VAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
VA + A VEP P+ A + VL G KE++ +
Sbjct: 281 VAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMW 318
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 94/147 (63%), Gaps = 8/147 (5%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS P+V+N R +++D +V DGLTD ++ IHMG AEN AKK +I+R EQD Y
Sbjct: 124 MSNVPYVMN-RGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAY 182
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTR-KGDVVVAKD-EYPKANTSVDALQKLRPVFQ 118
A S ++ A E G F E++PV ++ + + DVVV +D EY + + S + KL+ VFQ
Sbjct: 183 AINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVDFS--KVPKLKTVFQ 240
Query: 119 KD-GTVTAGNASGINDGAAAGKLYLFT 144
K+ GTVTA NAS +NDGAAA L L T
Sbjct: 241 KENGTVTAANASTLNDGAAA--LVLMT 265
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 144 TRKG--DVVVAKDEYPKANTTVEALQKLRPVFQKD-GTVTAGNASGINDGAAAVLLMSYK 200
T KG DVVV +DE K + KL+ VFQK+ GTVTA NAS +NDGAAA++LM+
Sbjct: 209 TVKGQPDVVVKEDEEYK-RVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTAD 267
Query: 201 RAQARNIQPLARI 213
A+ N+ PLARI
Sbjct: 268 AAKRLNVTPLARI 280
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 132/218 (60%), Gaps = 4/218 (1%)
Query: 210 LARIAIKSGDATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHM 269
+A ++ G +VAGG E MS P+V+N R +++D +V DGLTD ++ IHM
Sbjct: 103 MASQSLMCGHQDVMVAGGMESMSNVPYVMN-RGSTPYGGVKLEDLIVKDGLTDVYNKIHM 161
Query: 270 GITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTR-KGDVVVAKD 328
G AEN AKK +I+R EQD YA S ++ A E G F E++PV ++ + + DVVV +D
Sbjct: 162 GSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKED 221
Query: 329 EYPKANTTVEALQKLRPVFQKD-GTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARI 387
E K + KL+ VFQK+ GTVTA NAS +NDGAAA++LM+ A+ N+ PLARI
Sbjct: 222 EEYK-RVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARI 280
Query: 388 VAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
VA + A VEP P+ A + VL G KE++ +
Sbjct: 281 VAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMW 318
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 94/147 (63%), Gaps = 8/147 (5%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS P+V+N R +++D +V DGLTD ++ IHMG AEN AKK +I+R EQD Y
Sbjct: 124 MSNVPYVMN-RGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAY 182
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTR-KGDVVVAKD-EYPKANTSVDALQKLRPVFQ 118
A S ++ A E G F E++PV ++ + + DVVV +D EY + + S + KL+ VFQ
Sbjct: 183 AINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVDFS--KVPKLKTVFQ 240
Query: 119 KD-GTVTAGNASGINDGAAAGKLYLFT 144
K+ GTVTA NAS +NDGAAA L L T
Sbjct: 241 KENGTVTAANASTLNDGAAA--LVLMT 265
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 144 TRKG--DVVVAKDEYPKANTTVEALQKLRPVFQKD-GTVTAGNASGINDGAAAVLLMSYK 200
T KG DVVV +DE K + KL+ VFQK+ GTVTA NAS +NDGAAA++LM+
Sbjct: 209 TVKGQPDVVVKEDEEYK-RVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTAD 267
Query: 201 RAQARNIQPLARI 213
A+ N+ PLARI
Sbjct: 268 AAKRLNVTPLARI 280
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 132/218 (60%), Gaps = 4/218 (1%)
Query: 210 LARIAIKSGDATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHM 269
+A ++ G +VAGG E MS P+V+N R +++D +V DGLTD ++ IHM
Sbjct: 114 MASQSLMCGHQDVMVAGGMESMSNVPYVMN-RGSTPYGGVKLEDLIVKDGLTDVYNKIHM 172
Query: 270 GITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTR-KGDVVVAKD 328
G AEN AKK +I+R EQD YA S ++ A E G F E++PV ++ + + DVVV +D
Sbjct: 173 GSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKED 232
Query: 329 EYPKANTTVEALQKLRPVFQKD-GTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARI 387
E K + KL+ VFQK+ GTVTA NAS +NDGAAA++LM+ A+ N+ PLARI
Sbjct: 233 EEYK-RVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARI 291
Query: 388 VAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
VA + A VEP P+ A + VL G KE++ +
Sbjct: 292 VAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMW 329
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 94/147 (63%), Gaps = 8/147 (5%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS P+V+N R +++D +V DGLTD ++ IHMG AEN AKK +I+R EQD Y
Sbjct: 135 MSNVPYVMN-RGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAY 193
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTR-KGDVVVAKD-EYPKANTSVDALQKLRPVFQ 118
A S ++ A E G F E++PV ++ + + DVVV +D EY + + S + KL+ VFQ
Sbjct: 194 AINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVDFS--KVPKLKTVFQ 251
Query: 119 KD-GTVTAGNASGINDGAAAGKLYLFT 144
K+ GTVTA NAS +NDGAAA L L T
Sbjct: 252 KENGTVTAANASTLNDGAAA--LVLMT 276
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 144 TRKG--DVVVAKDEYPKANTTVEALQKLRPVFQKD-GTVTAGNASGINDGAAAVLLMSYK 200
T KG DVVV +DE K + KL+ VFQK+ GTVTA NAS +NDGAAA++LM+
Sbjct: 220 TVKGQPDVVVKEDEEYK-RVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTAD 278
Query: 201 RAQARNIQPLARI 213
A+ N+ PLARI
Sbjct: 279 AAKRLNVTPLARI 291
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 131/218 (60%), Gaps = 6/218 (2%)
Query: 214 AIKSGDATAIVAGGQECMSQAPHVI-NIRNGIKLNDAEMKDS-----MVFDGLTDAFHNI 267
AI +G+ + G E MS+AP+ + G + M D+ V + +
Sbjct: 102 AIWAGEGKVYIGSGVESMSRAPYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTE 161
Query: 268 HMGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAK 327
MG TAEN+A+ + I R EQD +A S K +A E G F +E+VPV + K +++V +
Sbjct: 162 SMGETAENLAEMYGIRREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQ 221
Query: 328 DEYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARI 387
DE P+ +T++E L LRPVF++ GTVTAGN+S +NDGAAAVLL+S A+A ++PLAR+
Sbjct: 222 DEGPRRDTSLEKLAALRPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARV 281
Query: 388 VAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
A++ AGV P +MG GP+PA L +AG S ++G
Sbjct: 282 RAIAVAGVPPRIMGIGPVPATRKALERAGLSFSDLGLI 319
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 101/188 (53%), Gaps = 24/188 (12%)
Query: 1 MSQAPHVI-NIRNGIKLNDAEMKDS-----MVFDGLTDAFHNIHMGITAENIAKKWSISR 54
MS+AP+ + G + M D+ V + + MG TAEN+A+ + I R
Sbjct: 119 MSRAPYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRR 178
Query: 55 LEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLR 114
EQD +A S K +A E G F +E+VPV + K +++V +DE P+ +TS++ L LR
Sbjct: 179 EEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQDEGPRRDTSLEKLAALR 238
Query: 115 PVFQKDGTVTAGNASGINDGAAAGKLYLFTRKGDVVVAKDEYPKANTTVEALQKLRPVFQ 174
PVF++ GTVTAGN+S +NDGAAA V++ D+Y KA+ LRP+ +
Sbjct: 239 PVFREGGTVTAGNSSPLNDGAAA-----------VLLVSDDYAKAH-------GLRPLAR 280
Query: 175 KDGTVTAG 182
AG
Sbjct: 281 VRAIAVAG 288
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 136/256 (53%), Gaps = 17/256 (6%)
Query: 177 GTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARIA--IKSGDATAIVAGGQECMSQA 234
G + A A ++D V L + R + +Q +A IA I++G +A G E MS A
Sbjct: 91 GAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLA 150
Query: 235 PHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEYAYQS 294
+ N + M+ D L I MGIT+EN+A+++ ISR +QD +A S
Sbjct: 151 ----DRGNPGNITSRLMEKEKARDCL------IPMGITSENVAERFGISREKQDTFALAS 200
Query: 295 QVKTAKAQEGGYFDEEIVPVVISTR-----KGDVVVAKDEYPKANTTVEALQKLRPVFQK 349
Q K A+AQ G F EIVPV + K + V +DE + +TT+E L KL+P F+K
Sbjct: 201 QQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAFKK 260
Query: 350 DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVN 409
DG+ TAGN+S ++DGAAA+LL A+ + L + + + GV P +MG GP A+
Sbjct: 261 DGSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIP 320
Query: 410 AVLAKAGWSKEEVGYF 425
L KAG + +V F
Sbjct: 321 VALQKAGLTVSDVDIF 336
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 72/106 (67%), Gaps = 5/106 (4%)
Query: 37 IHMGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTR-----KG 91
I MGIT+EN+A+++ ISR +QD +A SQ K A+AQ G F EIVPV + K
Sbjct: 173 IPMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKR 232
Query: 92 DVVVAKDEYPKANTSVDALQKLRPVFQKDGTVTAGNASGINDGAAA 137
+ V +DE + +T+++ L KL+P F+KDG+ TAGN+S ++DGAAA
Sbjct: 233 SITVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGNSSQVSDGAAA 278
>pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 116/229 (50%), Gaps = 26/229 (11%)
Query: 220 ATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIH----------- 268
+T VA ++C S V +I N IK+ ++ ++ + +T+ + N++
Sbjct: 91 STPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQ 150
Query: 269 -----------MGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVIS 317
MGIT EN+A + ISR +QDE+A S K KA+ G F++EI+P+ +
Sbjct: 151 KNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLP 210
Query: 318 TRKGDVVVAKDEYPKANTTVEALQKLRPVFQKD-GTVTAGNASGINDGAAAVLLMSYKTA 376
+ DE P+ N T E+L +RP F KD GT TAGNAS ++DG A VLL A
Sbjct: 211 DGS---ICQSDEGPRPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVA 267
Query: 377 QARNIQPLARIVAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
N+ L R + + GV P +MG GP A+ VL G +++ F
Sbjct: 268 NQLNLPVLGRYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIF 316
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 4/101 (3%)
Query: 37 IHMGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVA 96
I MGIT EN+A + ISR +QDE+A S K KA+ G F++EI+P+ + +
Sbjct: 160 IPMGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGS---ICQ 216
Query: 97 KDEYPKANTSVDALQKLRPVFQKD-GTVTAGNASGINDGAA 136
DE P+ N + ++L +RP F KD GT TAGNAS ++DG A
Sbjct: 217 SDEGPRPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVA 257
>pdb|1PXT|A Chain A, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
pdb|1PXT|B Chain B, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
Length = 390
Score = 124 bits (312), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 116/229 (50%), Gaps = 26/229 (11%)
Query: 220 ATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIH----------- 268
+T VA ++C S V +I N IK+ ++ ++ + +T+ + N++
Sbjct: 88 STPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQ 147
Query: 269 -----------MGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVIS 317
MGIT EN+A + ISR +QDE+A S K KA+ G F++EI+P+ +
Sbjct: 148 KNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLP 207
Query: 318 TRKGDVVVAKDEYPKANTTVEALQKLRPVFQKD-GTVTAGNASGINDGAAAVLLMSYKTA 376
+ DE P+ N T E+L +RP F KD GT TAGNAS ++DG A VLL A
Sbjct: 208 DGS---ICQSDEGPRPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVA 264
Query: 377 QARNIQPLARIVAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
N+ L R + + GV P +MG GP A+ VL G +++ F
Sbjct: 265 NQLNLPVLGRYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIF 313
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 4/101 (3%)
Query: 37 IHMGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVA 96
I MGIT EN+A + ISR +QDE+A S K KA+ G F++EI+P+ + +
Sbjct: 157 IPMGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGS---ICQ 213
Query: 97 KDEYPKANTSVDALQKLRPVFQKD-GTVTAGNASGINDGAA 136
DE P+ N + ++L +RP F KD GT TAGNAS ++DG A
Sbjct: 214 SDEGPRPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVA 254
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 101/165 (61%), Gaps = 6/165 (3%)
Query: 267 IHMGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPV---VISTRKGD- 322
+ MGIT+EN+A+K+SI+R EQD+ A S KTA A G F +EI+P+ ++ + GD
Sbjct: 177 LPMGITSENVAQKFSITRQEQDQAAVGSHRKTAAATAAGRFKDEIIPIKTKIVDPKTGDE 236
Query: 323 --VVVAKDEYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKTAQARN 380
V ++ D+ + T++ L KL+PVF+KDG+ TAG +S ++DGA AVLLM A +
Sbjct: 237 KPVTISVDDGIRPGTSLADLAKLKPVFRKDGSTTAGTSSQVSDGAGAVLLMKRSIALQKG 296
Query: 381 IQPLARIVAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
+ L ++ GV P++MG GP A+ A + AG +++ F
Sbjct: 297 LPILGVFRTFAAVGVPPSIMGIGPAVAIPAAVKAAGLQIDDIDLF 341
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 75/115 (65%), Gaps = 8/115 (6%)
Query: 37 IHMGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPV---VISTRKGD- 92
+ MGIT+EN+A+K+SI+R EQD+ A S KTA A G F +EI+P+ ++ + GD
Sbjct: 177 LPMGITSENVAQKFSITRQEQDQAAVGSHRKTAAATAAGRFKDEIIPIKTKIVDPKTGDE 236
Query: 93 --VVVAKDEYPKANTSVDALQKLRPVFQKDGTVTAGNASGINDGAAAGKLYLFTR 145
V ++ D+ + TS+ L KL+PVF+KDG+ TAG +S ++DG AG + L R
Sbjct: 237 KPVTISVDDGIRPGTSLADLAKLKPVFRKDGSTTAGTSSQVSDG--AGAVLLMKR 289
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 101/165 (61%), Gaps = 6/165 (3%)
Query: 267 IHMGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPV---VISTRKGD- 322
+ MG+T+EN+A+++ +SR EQD+ A S K A A G F +EI+PV ++ + GD
Sbjct: 174 LPMGVTSENVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDE 233
Query: 323 --VVVAKDEYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKTAQARN 380
+ V+ D+ + TT+ +L KL+PVF+KDGT TAGN+S ++DGA AVLLM A +
Sbjct: 234 KPITVSVDDGIRPTTTLASLGKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKG 293
Query: 381 IQPLARIVAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
+ L ++ GV+P +MG GP A+ A + AG +++ F
Sbjct: 294 LPVLGVFRTFAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDLF 338
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 72/107 (67%), Gaps = 6/107 (5%)
Query: 37 IHMGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPV---VISTRKGD- 92
+ MG+T+EN+A+++ +SR EQD+ A S K A A G F +EI+PV ++ + GD
Sbjct: 174 LPMGVTSENVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDE 233
Query: 93 --VVVAKDEYPKANTSVDALQKLRPVFQKDGTVTAGNASGINDGAAA 137
+ V+ D+ + T++ +L KL+PVF+KDGT TAGN+S ++DGA A
Sbjct: 234 KPITVSVDDGIRPTTTLASLGKLKPVFKKDGTTTAGNSSQVSDGAGA 280
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 101/165 (61%), Gaps = 6/165 (3%)
Query: 267 IHMGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPV---VISTRKGD- 322
+ MG+T+EN+A+++ +SR EQD+ A S K A A G F +EI+PV ++ + GD
Sbjct: 157 LPMGVTSENVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDE 216
Query: 323 --VVVAKDEYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKTAQARN 380
+ V+ D+ + TT+ +L KL+PVF+KDGT TAGN+S ++DGA AVLLM A +
Sbjct: 217 KPITVSVDDGIRPTTTLASLGKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKG 276
Query: 381 IQPLARIVAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
+ L ++ GV+P +MG GP A+ A + AG +++ F
Sbjct: 277 LPVLGVFRTFAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDLF 321
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 72/107 (67%), Gaps = 6/107 (5%)
Query: 37 IHMGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPV---VISTRKGD- 92
+ MG+T+EN+A+++ +SR EQD+ A S K A A G F +EI+PV ++ + GD
Sbjct: 157 LPMGVTSENVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDE 216
Query: 93 --VVVAKDEYPKANTSVDALQKLRPVFQKDGTVTAGNASGINDGAAA 137
+ V+ D+ + T++ +L KL+PVF+KDGT TAGN+S ++DGA A
Sbjct: 217 KPITVSVDDGIRPTTTLASLGKLKPVFKKDGTTTAGNSSQVSDGAGA 263
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 146/299 (48%), Gaps = 40/299 (13%)
Query: 153 KDEYPKANTTVEA---LQKLRPVFQKDGTV--TAGNASGINDGAAAVLLMSYKRAQARNI 207
+ YP + T+ + L + PV + G + TA A+G+ + V L + + +
Sbjct: 44 RRRYPDLDETLISDMILGVVSPVGDQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAV 103
Query: 208 QPLARIAIKSGDATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNI 267
A+ ++SG ++AGG E MS+ P + G D E + F +
Sbjct: 104 NTAAQ-KVRSGWDDLVLAGGVESMSRVP--MGSDGGAWATDPETNYRIGF---------V 151
Query: 268 HMGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAK 327
GI A+ IA SR + D YA +SQ K A A GGYF + +VPV + G V++
Sbjct: 152 PQGIGADLIATLEGFSREDVDAYALRSQQKAAAAWSGGYFAKSVVPV--RDQNGLVILDH 209
Query: 328 DEYPKANTTVEALQKLRPVFQKDGTV---------------------TAGNASGINDGAA 366
DE+ + +TT+E L KL+ F G + T GN+SGI DGAA
Sbjct: 210 DEHMRPDTTMEGLAKLKTAFDGVGEMGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAA 269
Query: 367 AVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
VL+ S K +++ + P ARIVA +++G +P +M TGP PA VL +AG + +++ F
Sbjct: 270 LVLVGSEKAGKSQGLTPRARIVATATSGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLF 328
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 84/177 (47%), Gaps = 37/177 (20%)
Query: 37 IHMGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVA 96
+ GI A+ IA SR + D YA +SQ K A A GGYF + +VPV + G V++
Sbjct: 151 VPQGIGADLIATLEGFSREDVDAYALRSQQKAAAAWSGGYFAKSVVPV--RDQNGLVILD 208
Query: 97 KDEYPKANTSVDALQKLRPVFQKDGTVTAGNASGINDGAAAGKLYLFTRKGDVVVAKDEY 156
DE+ + +T+++ L KL+ F DG G G +D
Sbjct: 209 HDEHMRPDTTMEGLAKLKTAF--DGV---GEMGGFDD----------------------- 240
Query: 157 PKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARI 213
ALQK V + + T GN+SGI DGAA VL+ S K +++ + P ARI
Sbjct: 241 -------VALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARI 290
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 117/214 (54%), Gaps = 14/214 (6%)
Query: 214 AIKSGDATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITA 273
AI +G+ V GG E M +++ +G+ N + G+ MG+TA
Sbjct: 107 AIMTGNGDVFVVGGVEHMGH----VSMMHGVDPNPHMSLYAAKASGM--------MGLTA 154
Query: 274 ENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDV-VVAKDEYPK 332
E + K ISR +QD +A +S KA G F +EI+P+ G + + DE +
Sbjct: 155 EMLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIR 214
Query: 333 ANTTVEALQKLRPVFQ-KDGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMS 391
+TT+E+L L+P F K GTVTAG +S I DGA+ +++MS + A+ ++PLA I +M+
Sbjct: 215 PDTTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMA 274
Query: 392 SAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
AGV+P +MG GP+PA L +AG + ++ +
Sbjct: 275 VAGVDPAIMGYGPVPATQKALKRAGLNMADIDFI 308
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 39 MGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDV-VVAK 97
MG+TAE + K ISR +QD +A +S KA G F +EI+P+ G + +
Sbjct: 150 MGLTAEMLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDY 209
Query: 98 DEYPKANTSVDALQKLRPVFQ-KDGTVTAGNASGINDGAAA 137
DE + +T++++L L+P F K GTVTAG +S I DGA+
Sbjct: 210 DETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQITDGASC 250
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 154 DEYPKANTTVEALQKLRPVFQ-KDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLAR 212
DE + +TT+E+L L+P F K GTVTAG +S I DGA+ +++MS +RA+ ++PLA
Sbjct: 210 DETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAV 269
Query: 213 I 213
I
Sbjct: 270 I 270
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 109/217 (50%), Gaps = 22/217 (10%)
Query: 215 IKSGDATAIVAGGQECMSQAP--HVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGIT 272
I +GDA + GG E P H ++ G+ N A+ G+T
Sbjct: 105 IXTGDAQVCLVGGVEHXGHVPXSHGVDFHPGLSRNVAKAAGXX--------------GLT 150
Query: 273 AENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAK---DE 329
AE +++ ISR QD++A +S + A + G F EI+P D V+ + DE
Sbjct: 151 AEXLSRLHGISREXQDQFAARSHARAWAATQSGAFKTEIIPT--GGHDADGVLKQFNYDE 208
Query: 330 YPKANTTVEALQKLRPVFQK-DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIV 388
+ TTVEAL LRP F GTVTAG +S ++DGAAA L+ S A+ ++P ARI
Sbjct: 209 VIRPETTVEALSTLRPAFDPVSGTVTAGTSSALSDGAAAXLVXSESRARELGLKPRARIR 268
Query: 389 AMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
+ + G +P++ G GP+PA L KAG S ++ F
Sbjct: 269 SXAVVGCDPSIXGYGPVPASKLALKKAGLSASDIDVF 305
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Query: 40 GITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAK-- 97
G+TAE +++ ISR QD++A +S + A + G F EI+P D V+ +
Sbjct: 148 GLTAEXLSRLHGISREXQDQFAARSHARAWAATQSGAFKTEIIPT--GGHDADGVLKQFN 205
Query: 98 -DEYPKANTSVDALQKLRPVFQK-DGTVTAGNASGINDGAAA 137
DE + T+V+AL LRP F GTVTAG +S ++DGAAA
Sbjct: 206 YDEVIRPETTVEALSTLRPAFDPVSGTVTAGTSSALSDGAAA 247
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 154 DEYPKANTTVEALQKLRPVFQK-DGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLAR 212
DE + TTVEAL LRP F GTVTAG +S ++DGAAA L+ S RA+ ++P AR
Sbjct: 207 DEVIRPETTVEALSTLRPAFDPVSGTVTAGTSSALSDGAAAXLVXSESRARELGLKPRAR 266
Query: 213 I 213
I
Sbjct: 267 I 267
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 344 RPV-FQKDGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAG-----VEP 397
RP +DG V + +GA ++L +Y+ A+ R + A +V + EP
Sbjct: 218 RPFTLSRDGFV-------MGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEP 270
Query: 398 TLMGTGPIPAVNAVLAKAGWSKEEVGYFNRVATSGGIANRRQ 439
G G A+ L AG + E+VGY N TS + +R +
Sbjct: 271 HPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAE 312
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 361 INDGAAAVLLMSYKTAQARNIQPLARIVAMSSAG-----VEPTLMGTGPIPAVNAVLAKA 415
I +GA V+L Y+ A+AR + A IV + G P G G A + A
Sbjct: 231 IGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAXKXAIDDA 290
Query: 416 GWSKEEVGYFNRVATS 431
G + ++V Y N TS
Sbjct: 291 GLTPDKVDYINAHGTS 306
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Query: 343 LRPVFQK-DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAG-----VE 396
RP K DG V + +GAA ++L Y+ A R + A ++ +G
Sbjct: 243 CRPFHPKRDGFV-------MGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITA 295
Query: 397 PTLMGTGPIPAVNAVLAKAGWSKEEVGYFNRVATS 431
P G G + + A L AG EE+ Y N ATS
Sbjct: 296 PDPEGEGALRCMAAALKDAGVQPEEISYINAHATS 330
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Query: 343 LRPVFQK-DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAG-----VE 396
RP K DG V + +GAA ++L Y+ A R + A ++ +G
Sbjct: 249 CRPFHPKRDGFV-------MGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITA 301
Query: 397 PTLMGTGPIPAVNAVLAKAGWSKEEVGYFNRVATS 431
P G G + + A L AG EE+ Y N ATS
Sbjct: 302 PDPEGEGALRCMAAALKDAGVQPEEISYINAHATS 336
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 343 LRPVFQ--KDGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAG-----V 395
RP FQ +DG V + +GA +++ S ++AQAR A IV + G
Sbjct: 243 CRP-FQEGRDGFV-------MGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHIT 294
Query: 396 EPTLMGTGPIPAVNAVLAKAGWSKEEVGYFNRVATS 431
P G G A+ A + AG ++V Y N TS
Sbjct: 295 APAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTS 330
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 361 INDGAAAVLLMSYKTAQARNIQPLARIVAMSSAG-----VEPTLMGTGPIPAVNAVLAKA 415
I +G+ ++L Y+ A+ R + A + +G +P G G + A+ L ++
Sbjct: 248 IGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQS 307
Query: 416 GWSKEEVGYFNRVATSGGIANRRQER 441
G ++ Y N ATS I + + R
Sbjct: 308 GLCPNQIDYVNAHATSTPIGDAVEAR 333
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 361 INDGAAAVLLMSYKTAQARNIQPLARIVAMSSAG-----VEPTLMGTGPIPAVNAVLAKA 415
+ +G+ ++L S + A+ R LA +V + P G G I A+ L +A
Sbjct: 251 MGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEA 310
Query: 416 GWSKEEVGYFNRVATS 431
S E+V Y N TS
Sbjct: 311 EISPEQVAYVNAAGTS 326
>pdb|3HFR|A Chain A, Crystal Structure Of Glutamate Racemase From Listeria
Monocytogenes
pdb|3HFR|B Chain B, Crystal Structure Of Glutamate Racemase From Listeria
Monocytogenes
pdb|3IST|A Chain A, Crystal Structure Of Glutamate Racemase From Listeria
Monocytogenes In Complex With Succinic Acid
pdb|3IST|B Chain B, Crystal Structure Of Glutamate Racemase From Listeria
Monocytogenes In Complex With Succinic Acid
pdb|3ISV|A Chain A, Crystal Structure Of Glutamate Racemase From Listeria
Monocytogenes In Complex With Acetate Ion
pdb|3ISV|B Chain B, Crystal Structure Of Glutamate Racemase From Listeria
Monocytogenes In Complex With Acetate Ion
Length = 269
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 209 PLARIAIKS--GDATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHN 266
PL + I++ GD A++ G+E S+ +++ N + D E++ G T F
Sbjct: 190 PLLKPIIENFXGDGVAVINSGEETASEVSALLDYHNLLDATDEEIEHRFFTTGSTQIF-- 247
Query: 267 IHMGITAENIAKKW 280
++IAK W
Sbjct: 248 -------KDIAKDW 254
>pdb|3HOI|A Chain A, Crystal Structure Of Fmn-dependent Nitroreductase Bf3017
From Bacteroides Fragilis Nctc 9343 (yp_212631.1) From
Bacteroides Fragilis Nctc 9343 At 1.55 A Resolution
Length = 193
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 215 IKSGDATAIVAGGQECMSQAP-HVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITA 273
I GD + VAGGQ ++ AP ++ + + KL DA+ + + G DA GI +
Sbjct: 94 ISEGDHRSAVAGGQAFVNNAPVSLVLVSDLSKLGDAK-SNHVQLXGAXDA------GIVS 146
Query: 274 ENIAKKWSISRL 285
+NI+ S +RL
Sbjct: 147 QNISLFCSAARL 158
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 361 INDGAAAVLLMSYKTAQARNIQPLARIVAMSSAG-----VEPTLMGTGPIPAVNAVLAKA 415
+ +G+ ++L S + A+ R LA +V + P G G I A+ L +A
Sbjct: 250 MGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEA 309
Query: 416 GWSKEEVGYFNRVATS 431
S E+V Y N TS
Sbjct: 310 EISPEQVAYVNAHGTS 325
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 361 INDGAAAVLLMSYKTAQARNIQPLARIVAMSSAG-----VEPTLMGTGPIPAVNAVLAKA 415
+ +GA V+L + A AR + A ++ +G PT G G + A L +A
Sbjct: 247 MGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALKRA 306
Query: 416 GWSKEEVGYFNRVATS 431
G +E+ Y N TS
Sbjct: 307 GIVPDEIDYINAHGTS 322
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 361 INDGAAAVLLMSYKTAQARNIQPLARIVAMSSAG-----VEPTLMGTGPIPAVNAVLAKA 415
+ +G+ ++L S + A+ R LA +V + P G G I A+ L +A
Sbjct: 250 MGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEA 309
Query: 416 GWSKEEVGYFNRVATS 431
S E+V Y N TS
Sbjct: 310 EISPEQVAYVNAHGTS 325
>pdb|3ABO|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And Ethanolamine
pdb|3ABO|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And Ethanolamine
pdb|3ABQ|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
2-Amino-1-Propanol
pdb|3ABQ|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
2-Amino-1-Propanol
pdb|3ABR|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl (Substrate-Free
Form)
pdb|3ABR|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl (Substrate-Free
Form)
pdb|3ABS|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escheri Complexed With Adeninylpentylcobalamin And
Ethanolamine
pdb|3ABS|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escheri Complexed With Adeninylpentylcobalamin And
Ethanolamine
pdb|3ANY|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(R)-2-Amino-1-Propanol
pdb|3ANY|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(R)-2-Amino-1-Propanol
pdb|3AO0|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(S)-2-Amino-1-Propanol
pdb|3AO0|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(S)-2-Amino-1-Propanol
Length = 453
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 272 TAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYP 331
TA N K WSIS L + + ++ V G E + V D++ + P
Sbjct: 83 TAYNQIKNWSISELREYVLSDETSVDDIAFTRKGLTSEVVAAVAKICSNADLIYGAKKMP 142
Query: 332 ---KANTTV 337
KANTT+
Sbjct: 143 VIKKANTTI 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,555,383
Number of Sequences: 62578
Number of extensions: 505218
Number of successful extensions: 1373
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1198
Number of HSP's gapped (non-prelim): 178
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)