RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4157
(441 letters)
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 370 bits (953), Expect = e-126
Identities = 116/216 (53%), Positives = 150/216 (69%)
Query: 210 LARIAIKSGDATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHM 269
L I +GDA+ IVAGG E MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HM
Sbjct: 98 LGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHM 157
Query: 270 GITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDE 329
G TAEN+AK+W +SR EQD +A SQ K AQ+ G F +EIVP ++ RKGD+ V DE
Sbjct: 158 GTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADE 217
Query: 330 YPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVA 389
Y + T++++ KLRP F K+GTVTAGNASG+NDGAAA LLMS A R IQPL RIV+
Sbjct: 218 YIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVS 277
Query: 390 MSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
++ GV+P +MGTGPIPA L +AGW ++
Sbjct: 278 WATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLV 313
Score = 256 bits (657), Expect = 8e-82
Identities = 77/137 (56%), Positives = 101/137 (73%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 119 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 121 GTVTAGNASGINDGAAA 137
GTVTAGNASG+NDGAAA
Sbjct: 239 GTVTAGNASGLNDGAAA 255
Score = 136 bits (344), Expect = 4e-36
Identities = 43/71 (60%), Positives = 51/71 (71%)
Query: 144 TRKGDVVVAKDEYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQ 203
RKGD+ V DEY + T++++ KLRP F K+GTVTAGNASG+NDGAAA LLMS A
Sbjct: 206 GRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEAS 265
Query: 204 ARNIQPLARIA 214
R IQPL RI
Sbjct: 266 RRGIQPLGRIV 276
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 368 bits (948), Expect = e-125
Identities = 118/217 (54%), Positives = 152/217 (70%), Gaps = 1/217 (0%)
Query: 210 LARIAIKSGDATAIVAGGQECMSQAPHVI-NIRNGIKLNDAEMKDSMVFDGLTDAFHNIH 268
+A I GDA ++ GG E MS +P+++ + R G ++ DA DSM+ DGL+D F+N H
Sbjct: 102 MASQLIALGDADIMLVGGAENMSMSPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYH 161
Query: 269 MGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKD 328
MGITAENIA++W+I+R EQDE A SQ K KAQ G FDEEIVPVVI RKGD VV KD
Sbjct: 162 MGITAENIAEQWNITREEQDELALASQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDKD 221
Query: 329 EYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIV 388
EY K TT+E L KLRP F+KDGTVTAGNASGINDGAA +++M+ + A+ I+PLA IV
Sbjct: 222 EYIKPGTTMEKLAKLRPAFKKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIV 281
Query: 389 AMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
+ +AGV+P +MG GP+PA L A + E++
Sbjct: 282 SYGTAGVDPKIMGYGPVPATKKALEAANMTIEDIDLV 318
Score = 254 bits (652), Expect = 5e-81
Identities = 87/138 (63%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
Query: 1 MSQAPHVI-NIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 59
MS +P+++ + R G ++ DA DSM+ DGL+D F+N HMGITAENIA++W+I+R EQDE
Sbjct: 123 MSMSPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQDE 182
Query: 60 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQK 119
A SQ K KAQ G FDEEIVPVVI RKGD VV KDEY K T+++ L KLRP F+K
Sbjct: 183 LALASQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDKDEYIKPGTTMEKLAKLRPAFKK 242
Query: 120 DGTVTAGNASGINDGAAA 137
DGTVTAGNASGINDGAA
Sbjct: 243 DGTVTAGNASGINDGAAM 260
Score = 137 bits (347), Expect = 2e-36
Identities = 45/71 (63%), Positives = 55/71 (77%)
Query: 144 TRKGDVVVAKDEYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQ 203
RKGD VV KDEY K TT+E L KLRP F+KDGTVTAGNASGINDGAA +++M+ ++A+
Sbjct: 211 GRKGDTVVDKDEYIKPGTTMEKLAKLRPAFKKDGTVTAGNASGINDGAAMLVVMAKEKAE 270
Query: 204 ARNIQPLARIA 214
I+PLA I
Sbjct: 271 ELGIEPLATIV 281
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 364 bits (936), Expect = e-124
Identities = 114/218 (52%), Positives = 146/218 (66%), Gaps = 2/218 (0%)
Query: 210 LARIAIKSGDATAIVAGGQECMSQAPHVI-NIRNGIKLNDAEMKDSMVFDGLTDAFHNIH 268
LA +I SG+ ++AGG E MSQAP+++ R G K+ + M DSM+ DGL DAF+ H
Sbjct: 100 LAAQSITSGENDVVIAGGTENMSQAPYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYH 159
Query: 269 MGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDV-VVAK 327
MGITAENIA K+ +R QD+ A +SQ K A + F EEIVPV + R+G + + K
Sbjct: 160 MGITAENIATKFEFTREMQDKLALESQNKAENAIKNNRFKEEIVPVDVLIRRGKIETIDK 219
Query: 328 DEYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARI 387
DEYPK T E L KL+P F+KDGTVTAGNASGINDGAA ++LMS + A I+PLA+I
Sbjct: 220 DEYPKLGMTFEGLSKLKPAFKKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKI 279
Query: 388 VAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
+ +SAGVEP +MGTGPIPA L KAG S ++
Sbjct: 280 KSYASAGVEPEVMGTGPIPATRKALKKAGLSINDIDLI 317
Score = 258 bits (661), Expect = 2e-82
Identities = 86/215 (40%), Positives = 109/215 (50%), Gaps = 56/215 (26%)
Query: 1 MSQAPHVI-NIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 59
MSQAP+++ R G K+ + M DSM+ DGL DAF+ HMGITAENIA K+ +R QD+
Sbjct: 121 MSQAPYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYHMGITAENIATKFEFTREMQDK 180
Query: 60 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQK 119
A +SQ K A + F EEIVPV + R+G + K
Sbjct: 181 LALESQNKAENAIKNNRFKEEIVPVDVLIRRGKIE---------------------TIDK 219
Query: 120 DGTVTAGNASGINDGAAAGKLYLFTRKGDVVVAKDEYPKANTTVEALQKLRPVFQKDGTV 179
D EYPK T E L KL+P F+KDGTV
Sbjct: 220 D----------------------------------EYPKLGMTFEGLSKLKPAFKKDGTV 245
Query: 180 TAGNASGINDGAAAVLLMSYKRAQARNIQPLARIA 214
TAGNASGINDGAA ++LMS ++A I+PLA+I
Sbjct: 246 TAGNASGINDGAAMLILMSQQKADELGIRPLAKIK 280
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 362 bits (931), Expect = e-123
Identities = 121/218 (55%), Positives = 159/218 (72%), Gaps = 2/218 (0%)
Query: 210 LARIAIKSGDATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHM 269
LA +I GD++ +VAGG E MS+APH+ +R G+K+ + + DS++ DGLTDAFHN HM
Sbjct: 101 LAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHM 160
Query: 270 GITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDE 329
GITAEN+AKKW +SR +QD+ A SQ +T AQ+ G+FD+EIVPV++STRKG + V DE
Sbjct: 161 GITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDE 220
Query: 330 YPKANTTVEALQKLRPVFQKDGT--VTAGNASGINDGAAAVLLMSYKTAQARNIQPLARI 387
+P+ + +EA+ KL+P F DGT VT NASGINDGAAAV+LM A R + PLARI
Sbjct: 221 FPRHGSNIEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARI 280
Query: 388 VAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
V+ S GVEP++MG GPIPA+ + KAGWS E+V F
Sbjct: 281 VSWSQVGVEPSIMGIGPIPAIKQAVTKAGWSLEDVDIF 318
Score = 248 bits (635), Expect = 1e-78
Identities = 79/139 (56%), Positives = 107/139 (76%), Gaps = 2/139 (1%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS+APH+ +R G+K+ + + DS++ DGLTDAFHN HMGITAEN+AKKW +SR +QD+
Sbjct: 122 MSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDKV 181
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ +T AQ+ G+FD+EIVPV++STRKG + V DE+P+ ++++A+ KL+P F D
Sbjct: 182 AVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKPYFLTD 241
Query: 121 GT--VTAGNASGINDGAAA 137
GT VT NASGINDGAAA
Sbjct: 242 GTGTVTPANASGINDGAAA 260
Score = 128 bits (324), Expect = 3e-33
Identities = 40/73 (54%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 144 TRKGDVVVAKDEYPKANTTVEALQKLRPVFQKDGT--VTAGNASGINDGAAAVLLMSYKR 201
TRKG + V DE+P+ + +EA+ KL+P F DGT VT NASGINDGAAAV+LM
Sbjct: 209 TRKGLIEVKTDEFPRHGSNIEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSE 268
Query: 202 AQARNIQPLARIA 214
A R + PLARI
Sbjct: 269 ADKRGLTPLARIV 281
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 359 bits (925), Expect = e-122
Identities = 101/217 (46%), Positives = 145/217 (66%), Gaps = 2/217 (0%)
Query: 210 LARIAIKSGDATAIVAGGQECMSQAPHVI-NIRNGIKLNDAEMKDSMVFDGLTDAFHNIH 268
A + I+ G + +VAGG E MS +P+ + R G +L E++D++ + L D H+I
Sbjct: 100 SAAMQIQLGVSEVVVAGGVEAMSSSPYALKQHRWGQRLQHGEIRDTVW-EVLEDPIHHIM 158
Query: 269 MGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKD 328
MG TAEN+ +++ I+R EQDE A +S KA E GYFD++IVP+ I R+ +VV +KD
Sbjct: 159 MGETAENLVEQYEITREEQDEVALRSHTLALKAIESGYFDDQIVPITIKERRKEVVFSKD 218
Query: 329 EYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIV 388
E+P+A+ T E L L+P F+KDG+VTAGNASG+NDG+A ++LMS + A+ + +QPLARIV
Sbjct: 219 EHPRADITAEKLAGLKPAFRKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIV 278
Query: 389 AMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
S AGV+P +MG GP PA+ L K WS E+
Sbjct: 279 GYSVAGVDPKIMGIGPAPAIRKGLEKVDWSLEDADLL 315
Score = 247 bits (633), Expect = 3e-78
Identities = 64/138 (46%), Positives = 96/138 (69%), Gaps = 2/138 (1%)
Query: 1 MSQAPHVI-NIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 59
MS +P+ + R G +L E++D++ + L D H+I MG TAEN+ +++ I+R EQDE
Sbjct: 121 MSSSPYALKQHRWGQRLQHGEIRDTVW-EVLEDPIHHIMMGETAENLVEQYEITREEQDE 179
Query: 60 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQK 119
A +S KA E GYFD++IVP+ I R+ +VV +KDE+P+A+ + + L L+P F+K
Sbjct: 180 VALRSHTLALKAIESGYFDDQIVPITIKERRKEVVFSKDEHPRADITAEKLAGLKPAFRK 239
Query: 120 DGTVTAGNASGINDGAAA 137
DG+VTAGNASG+NDG+A
Sbjct: 240 DGSVTAGNASGLNDGSAV 257
Score = 136 bits (345), Expect = 3e-36
Identities = 39/71 (54%), Positives = 57/71 (80%)
Query: 144 TRKGDVVVAKDEYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQ 203
R+ +VV +KDE+P+A+ T E L L+P F+KDG+VTAGNASG+NDG+A ++LMS ++A+
Sbjct: 208 ERRKEVVFSKDEHPRADITAEKLAGLKPAFRKDGSVTAGNASGLNDGSAVLVLMSEEKAK 267
Query: 204 ARNIQPLARIA 214
+ +QPLARI
Sbjct: 268 EKGLQPLARIV 278
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 332 bits (854), Expect = e-111
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 6/219 (2%)
Query: 210 LARIAIKSGDATAIVAGGQECMSQAPHVI-NIRNGIKLNDAEMKDS-----MVFDGLTDA 263
A AI +G+ + G E MS+AP+ + G + M D+ V +
Sbjct: 98 QAARAIWAGEGKVYIGSGVESMSRAPYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQAL 157
Query: 264 FHNIHMGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDV 323
+ MG TAEN+A+ + I R EQD +A S K +A E G F +E+VPV + K ++
Sbjct: 158 YGTESMGETAENLAEMYGIRREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEI 217
Query: 324 VVAKDEYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKTAQARNIQP 383
+V +DE P+ +T++E L LRPVF++ GTVTAGN+S +NDGAAAVLL+S A+A ++P
Sbjct: 218 LVEQDEGPRRDTSLEKLAALRPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRP 277
Query: 384 LARIVAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEV 422
LAR+ A++ AGV P +MG GP+PA L +AG S ++
Sbjct: 278 LARVRAIAVAGVPPRIMGIGPVPATRKALERAGLSFSDL 316
Score = 224 bits (574), Expect = 2e-69
Identities = 58/143 (40%), Positives = 85/143 (59%), Gaps = 6/143 (4%)
Query: 1 MSQAPHVI-NIRNGIKLNDAEMKDS-----MVFDGLTDAFHNIHMGITAENIAKKWSISR 54
MS+AP+ + G + M D+ V + + MG TAEN+A+ + I R
Sbjct: 119 MSRAPYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRR 178
Query: 55 LEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLR 114
EQD +A S K +A E G F +E+VPV + K +++V +DE P+ +TS++ L LR
Sbjct: 179 EEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQDEGPRRDTSLEKLAALR 238
Query: 115 PVFQKDGTVTAGNASGINDGAAA 137
PVF++ GTVTAGN+S +NDGAAA
Sbjct: 239 PVFREGGTVTAGNSSPLNDGAAA 261
Score = 129 bits (328), Expect = 9e-34
Identities = 40/82 (48%), Positives = 57/82 (69%), Gaps = 3/82 (3%)
Query: 144 TRKGDVVVAKDEYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQ 203
K +++V +DE P+ +T++E L LRPVF++ GTVTAGN+S +NDGAAAVLL+S A+
Sbjct: 212 RGKEEILVEQDEGPRRDTSLEKLAALRPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAK 271
Query: 204 ARNIQPLARIAIKSGDATAIVA 225
A ++PLAR+ A A V
Sbjct: 272 AHGLRPLARVR---AIAVAGVP 290
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 326 bits (838), Expect = e-109
Identities = 94/218 (43%), Positives = 131/218 (60%), Gaps = 4/218 (1%)
Query: 210 LARIAIKSGDATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHM 269
+A ++ G +VAGG E MS P+V+N R +++D +V DGLTD ++ IHM
Sbjct: 103 MASQSLMCGHQDVMVAGGMESMSNVPYVMN-RGSTPYGGVKLEDLIVKDGLTDVYNKIHM 161
Query: 270 GITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKG-DVVVAKD 328
G AEN AKK +I+R EQD YA S ++ A E G F E++PV ++ + DVVV +D
Sbjct: 162 GSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKED 221
Query: 329 EYPKANTTVEALQKLRPVFQKD-GTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARI 387
E K + KL+ VFQK+ GTVTA NAS +NDGAAA++LM+ A+ N+ PLARI
Sbjct: 222 EEYK-RVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARI 280
Query: 388 VAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
VA + A VEP P+ A + VL G KE++ +
Sbjct: 281 VAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMW 318
Score = 219 bits (561), Expect = 1e-67
Identities = 65/139 (46%), Positives = 87/139 (62%), Gaps = 4/139 (2%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS P+V+N R +++D +V DGLTD ++ IHMG AEN AKK +I+R EQD Y
Sbjct: 124 MSNVPYVMN-RGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAY 182
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKG-DVVVAKDEYPKANTSVDALQKLRPVFQK 119
A S ++ A E G F E++PV ++ + DVVV +DE K + KL+ VFQK
Sbjct: 183 AINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYK-RVDFSKVPKLKTVFQK 241
Query: 120 D-GTVTAGNASGINDGAAA 137
+ GTVTA NAS +NDGAAA
Sbjct: 242 ENGTVTAANASTLNDGAAA 260
Score = 113 bits (285), Expect = 6e-28
Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 145 RKGDVVVAKDEYPKANTTVEALQKLRPVFQKD-GTVTAGNASGINDGAAAVLLMSYKRAQ 203
+ DVVV +DE K + KL+ VFQK+ GTVTA NAS +NDGAAA++LM+ A+
Sbjct: 212 GQPDVVVKEDEEYK-RVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAK 270
Query: 204 ARNIQPLARIA 214
N+ PLARI
Sbjct: 271 RLNVTPLARIV 281
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 304 bits (781), Expect = e-100
Identities = 74/214 (34%), Positives = 111/214 (51%), Gaps = 14/214 (6%)
Query: 214 AIKSGDATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITA 273
AI +G+ V GG E M + D L A + MG+TA
Sbjct: 107 AIMTGNGDVFVVGGVEHMGHVSMMHG------------VDPNPHMSLYAAKASGMMGLTA 154
Query: 274 ENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGD-VVVAKDEYPK 332
E + K ISR +QD +A +S KA G F +EI+P+ G + DE +
Sbjct: 155 EMLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIR 214
Query: 333 ANTTVEALQKLRPVFQ-KDGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMS 391
+TT+E+L L+P F K GTVTAG +S I DGA+ +++MS + A+ ++PLA I +M+
Sbjct: 215 PDTTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMA 274
Query: 392 SAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
AGV+P +MG GP+PA L +AG + ++ +
Sbjct: 275 VAGVDPAIMGYGPVPATQKALKRAGLNMADIDFI 308
Score = 196 bits (500), Expect = 1e-58
Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 14/139 (10%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
M + D L A + MG+TAE + K ISR +QD +
Sbjct: 124 MGHVSMMHG------------VDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAF 171
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGD-VVVAKDEYPKANTSVDALQKLRPVFQ- 118
A +S KA G F +EI+P+ G + DE + +T++++L L+P F
Sbjct: 172 AVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNP 231
Query: 119 KDGTVTAGNASGINDGAAA 137
K GTVTAG +S I DGA+
Sbjct: 232 KGGTVTAGTSSQITDGASC 250
Score = 117 bits (297), Expect = 1e-29
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 144 TRKGD-VVVAKDEYPKANTTVEALQKLRPVFQ-KDGTVTAGNASGINDGAAAVLLMSYKR 201
G + DE + +TT+E+L L+P F K GTVTAG +S I DGA+ +++MS +R
Sbjct: 199 DENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQR 258
Query: 202 AQARNIQPLARI 213
A+ ++PLA I
Sbjct: 259 AKDLGLEPLAVI 270
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 301 bits (774), Expect = 2e-99
Identities = 74/213 (34%), Positives = 103/213 (48%), Gaps = 11/213 (5%)
Query: 214 AIKSGDATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITA 273
IK G +A G E M+ +N + + I MGIT
Sbjct: 114 KIKVGQIDIGLALGVESMTNNYKNVN-------PLGMISSEELQKNREAKKCLIPMGITN 166
Query: 274 ENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKA 333
EN+A + ISR +QDE+A S K KA+ G F++EI+P+ + + DE P+
Sbjct: 167 ENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKL---PDGSICQSDEGPRP 223
Query: 334 NTTVEALQKLRPVFQKD-GTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSS 392
N T E+L +RP F KD GT TAGNAS ++DG A VLL A N+ L R + +
Sbjct: 224 NVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQT 283
Query: 393 AGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
GV P +MG GP A+ VL G +++ F
Sbjct: 284 VGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIF 316
Score = 193 bits (492), Expect = 2e-57
Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
M+ +N + + I MGIT EN+A + ISR +QDE+
Sbjct: 131 MTNNYKNVN-------PLGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEF 183
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A S K KA+ G F++EI+P+ + + DE P+ N + ++L +RP F KD
Sbjct: 184 AANSYQKAYKAKNEGLFEDEILPIKL---PDGSICQSDEGPRPNVTAESLSSIRPAFIKD 240
Query: 121 -GTVTAGNASGINDGAAA 137
GT TAGNAS ++DG A
Sbjct: 241 RGTTTAGNASQVSDGVAG 258
Score = 117 bits (295), Expect = 3e-29
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 146 KGDVVVAKDEYPKANTTVEALQKLRPVFQKD-GTVTAGNASGINDGAAAVLLMSYKRAQA 204
+ DE P+ N T E+L +RP F KD GT TAGNAS ++DG A VLL A
Sbjct: 210 PDGSICQSDEGPRPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQ 269
Query: 205 RNIQPLARIA 214
N+ L R
Sbjct: 270 LNLPVLGRYI 279
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 290 bits (744), Expect = 1e-94
Identities = 79/218 (36%), Positives = 116/218 (53%), Gaps = 17/218 (7%)
Query: 214 AIKSGDATAIVAGGQECMSQAPHVIN-IRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGIT 272
I++G +A G E MS A + + +D + I MGIT
Sbjct: 130 GIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCL-----------IPMGIT 178
Query: 273 AENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVIS-----TRKGDVVVAK 327
+EN+A+++ ISR +QD +A SQ K A+AQ G F EIVPV + K + V +
Sbjct: 179 SENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQ 238
Query: 328 DEYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARI 387
DE + +TT+E L KL+P F+KDG+ TAGN+S ++DGAAA+LL A+ + L +
Sbjct: 239 DEGIRPSTTMEGLAKLKPAFKKDGSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVL 298
Query: 388 VAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
+ + GV P +MG GP A+ L KAG + +V F
Sbjct: 299 RSYAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIF 336
Score = 200 bits (511), Expect = 5e-60
Identities = 60/215 (27%), Positives = 89/215 (41%), Gaps = 63/215 (29%)
Query: 1 MSQAPHVIN-IRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 59
MS A + + +D + I MGIT+EN+A+++ ISR +QD
Sbjct: 147 MSLADRGNPGNITSRLMEKEKARDCL-----------IPMGITSENVAERFGISREKQDT 195
Query: 60 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQK 119
+A SQ K A+AQ G F EIVPV +
Sbjct: 196 FALASQQKAARAQSKGCFQAEIVPVTTTVHDDK--------------------------- 228
Query: 120 DGTVTAGNASGINDGAAAGKLYLFTRKGDVVVAKDEYPKANTTVEALQKLRPVFQKDGTV 179
K + V +DE + +TT+E L KL+P F+KDG+
Sbjct: 229 ------------------------GTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDGST 264
Query: 180 TAGNASGINDGAAAVLLMSYKRAQARNIQPLARIA 214
TAGN+S ++DGAAA+LL +A+ + L +
Sbjct: 265 TAGNSSQVSDGAAAILLARRSKAEELGLPILGVLR 299
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 283 bits (726), Expect = 2e-92
Identities = 77/214 (35%), Positives = 111/214 (51%), Gaps = 14/214 (6%)
Query: 214 AIKSGDATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITA 273
I +GDA + GG E M P +G+ + ++ G MG+TA
Sbjct: 104 MIMTGDAQVCLVGGVEHMGHVPMS----HGVDFHPGLSRNVAKAAG--------MMGLTA 151
Query: 274 ENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGD-VVVAKDEYPK 332
E +++ ISR QD++A +S + A + G F EI+P G DE +
Sbjct: 152 EMLSRLHGISREMQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIR 211
Query: 333 ANTTVEALQKLRPVFQK-DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMS 391
TTVEAL LRP F GTVTAG +S ++DGAAA+L+MS A+ ++P ARI +M+
Sbjct: 212 PETTVEALSTLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMA 271
Query: 392 SAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
G +P++MG GP+PA L KAG S ++ F
Sbjct: 272 VVGCDPSIMGYGPVPASKLALKKAGLSASDIDVF 305
Score = 177 bits (451), Expect = 2e-51
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 14/139 (10%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
M P +G+ + ++ G MG+TAE +++ ISR QD++
Sbjct: 121 MGHVPMS----HGVDFHPGLSRNVAKAAG--------MMGLTAEMLSRLHGISREMQDQF 168
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGD-VVVAKDEYPKANTSVDALQKLRPVFQK 119
A +S + A + G F EI+P G DE + T+V+AL LRP F
Sbjct: 169 AARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRPETTVEALSTLRPAFDP 228
Query: 120 -DGTVTAGNASGINDGAAA 137
GTVTAG +S ++DGAAA
Sbjct: 229 VSGTVTAGTSSALSDGAAA 247
Score = 113 bits (285), Expect = 6e-28
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 145 RKGD-VVVAKDEYPKANTTVEALQKLRPVFQK-DGTVTAGNASGINDGAAAVLLMSYKRA 202
G DE + TTVEAL LRP F GTVTAG +S ++DGAAA+L+MS RA
Sbjct: 197 ADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRA 256
Query: 203 QARNIQPLARI 213
+ ++P ARI
Sbjct: 257 RELGLKPRARI 267
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 279 bits (715), Expect = 5e-90
Identities = 75/219 (34%), Positives = 118/219 (53%), Gaps = 18/219 (8%)
Query: 214 AIKSGDATAIVAGGQECMSQAPHVIN-IRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGIT 272
AIK+G + G E M+ P N A+ ++ + + MG+T
Sbjct: 131 AIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCL-----------LPMGVT 179
Query: 273 AENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPV---VISTRKGD---VVVA 326
+EN+A+++ +SR EQD+ A S K A A G F +EI+PV ++ + GD + V+
Sbjct: 180 SENVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVS 239
Query: 327 KDEYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLAR 386
D+ + TT+ +L KL+PVF+KDGT TAGN+S ++DGA AVLLM A + + L
Sbjct: 240 VDDGIRPTTTLASLGKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGV 299
Query: 387 IVAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
++ GV+P +MG GP A+ A + AG +++ F
Sbjct: 300 FRTFAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDLF 338
Score = 187 bits (477), Expect = 8e-55
Identities = 57/214 (26%), Positives = 87/214 (40%), Gaps = 62/214 (28%)
Query: 1 MSQAPHVIN-IRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE 59
M+ P N A+ ++ + + MG+T+EN+A+++ +SR EQD+
Sbjct: 148 MTTNPMAWEGSVNPAVKKFAQAQNCL-----------LPMGVTSENVAQRFGVSRQEQDQ 196
Query: 60 YAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQK 119
A S K A A G F +EI+PV K
Sbjct: 197 AAVDSHRKAAAATAAGKFKDEIIPVKTKLVD---------------------------PK 229
Query: 120 DGTVTAGNASGINDGAAAGKLYLFTRKGDVVVAKDEYPKANTTVEALQKLRPVFQKDGTV 179
G + + V+ D+ + TT+ +L KL+PVF+KDGT
Sbjct: 230 TG-----------------------DEKPITVSVDDGIRPTTTLASLGKLKPVFKKDGTT 266
Query: 180 TAGNASGINDGAAAVLLMSYKRAQARNIQPLARI 213
TAGN+S ++DGA AVLLM A + + L
Sbjct: 267 TAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVF 300
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 233 bits (596), Expect = 1e-72
Identities = 78/237 (32%), Positives = 114/237 (48%), Gaps = 42/237 (17%)
Query: 214 AIKSGDATAIVAGGQECMSQAPHVINIRNGIKLNDAEM-KDSMVFDG---LTDAFHNIHM 269
++SG ++AGG E MS+ P M D + +
Sbjct: 109 KVRSGWDDLVLAGGVESMSRVP---------------MGSDGGAWATDPETNYRIGFVPQ 153
Query: 270 GITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDE 329
GI A+ IA SR + D YA +SQ K A A GGYF + +VPV + G V++ DE
Sbjct: 154 GIGADLIATLEGFSREDVDAYALRSQQKAAAAWSGGYFAKSVVPV--RDQNGLVILDHDE 211
Query: 330 YPKANTTVEALQKLRPVFQKDG---------------------TVTAGNASGINDGAAAV 368
+ + +TT+E L KL+ F G T GN+SGI DGAA V
Sbjct: 212 HMRPDTTMEGLAKLKTAFDGVGEMGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALV 271
Query: 369 LLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
L+ S K +++ + P ARIVA +++G +P +M TGP PA VL +AG + +++ F
Sbjct: 272 LVGSEKAGKSQGLTPRARIVATATSGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLF 328
Score = 162 bits (412), Expect = 1e-45
Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 37/177 (20%)
Query: 37 IHMGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVA 96
+ GI A+ IA SR + D YA +SQ K A A GGYF + +VPV + G V++
Sbjct: 151 VPQGIGADLIATLEGFSREDVDAYALRSQQKAAAAWSGGYFAKSVVPV--RDQNGLVILD 208
Query: 97 KDEYPKANTSVDALQKLRPVFQKDGTVTAGNASGINDGAAAGKLYLFTRKGDVVVAKDEY 156
DE+ + +T+++ L KL+ F G + +
Sbjct: 209 HDEHMRPDTTMEGLAKLKTAFDGVGEMGGFDDV--------------------------- 241
Query: 157 PKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARI 213
ALQK V + + T GN+SGI DGAA VL+ S K +++ + P ARI
Sbjct: 242 --------ALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARI 290
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 5e-07
Identities = 62/520 (11%), Positives = 150/520 (28%), Gaps = 184/520 (35%)
Query: 26 VFDGLTDAF---HNIH------MGITAENIAKKWSISRLEQDEYAYQSQV---------- 66
+ + ++IH + + K + + Y +++
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK----NY-ITARIMAKRPFDKKS 141
Query: 67 -----KTAKAQE-------GG------YFDE----------EIVPVVISTRK------GD 92
+ GG YF+E + ++ + +
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 93 VVVAKDEYPKANTSVDALQKLR--------------PV-------FQKDGTVTAGNASGI 131
+ A+ + + ++ L+ L P+ Q V G
Sbjct: 202 TLDAEKVFTQ---GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 132 NDGAAAGKLY-LFTRKGDVVVA---------KDEYPKANTTVEAL-------QKLRP--- 171
G L +V A + + + L + P
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 172 ----VFQKDGTVTAGNAS---GINDGAAAVLLMSYKRAQARNIQ-PLAR---IAIKSGDA 220
+ + G S I++ + N P + I++ +G
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQ---DYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 221 TAIVAGGQECM---------SQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGI 271
+V+G + + ++AP ++ ++ I ++ ++K S F + FH+ +
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLD-QSRIPFSERKLKFSNRFLPVASPFHSHLLVP 434
Query: 272 TAENIAKKWSISRLEQDEYAY-QSQVKTAKAQEGGYFDEEIVPVVISTRKG-DVVVAKDE 329
++ I L ++ ++ ++ +P V T G D+ V
Sbjct: 435 ASDLI-----NKDLVKNNVSFNAKDIQ--------------IP-VYDTFDGSDLRVLSGS 474
Query: 330 YPKANTTVEALQKLRPV-FQKDGTVTAGNASGIND----GAAAVLLMSYKTAQARNIQPL 384
+ V+ + +L PV ++ T A+ I D GA+ + +++++ +
Sbjct: 475 ISER--IVDCIIRL-PVKWET---TTQFKATHILDFGPGGASGLGVLTHRNKDGTGV--- 525
Query: 385 ARIVAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGY 424
R++ AG + P ++ G+
Sbjct: 526 -RVI---VAGT----LDINP--------------DDDYGF 543
Score = 43.1 bits (101), Expect = 2e-04
Identities = 46/275 (16%), Positives = 90/275 (32%), Gaps = 107/275 (38%)
Query: 20 EMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDE----YAYQSQV----KTAKA 71
E +M+F+ + D + E I K E +E Y ++S+ T
Sbjct: 1686 ENYSAMIFETIVDGK------LKTEKIFK-------EINEHSTSYTFRSEKGLLSATQFT 1732
Query: 72 QEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRP--VFQKDGTVTAG--- 126
Q P ++ A + L+ + D T AG
Sbjct: 1733 Q----------PA-LTL----------------MEKAAFEDLKSKGLIPADATF-AGHSL 1764
Query: 127 ---NA----SGINDGAAAGKLYLFTRKG---DVVVAKDEYPKANTTVEALQKLRPVFQKD 176
A + + + ++ +F R G V V +DE ++N + A+ P
Sbjct: 1765 GEYAALASLADVMSIESLVEV-VFYR-GMTMQVAVPRDELGRSNYGMIAI---NP----- 1814
Query: 177 GTVTAGNASGINDGAAAVLLMSYKRAQAR----------NI---QPLARIAIKSGDATAI 223
G V A+ + A ++ +R R N+ Q +GD A+
Sbjct: 1815 GRV----AASFSQEALQYVV---ERVGKRTGWLVEIVNYNVENQQ----YVA-AGDLRAL 1862
Query: 224 VAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFD 258
+ ++ + I ++ I + E++ S+ +
Sbjct: 1863 -----DTVTNVLNFIKLQK-IDI--IELQKSLSLE 1889
Score = 33.1 bits (75), Expect = 0.23
Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 45/171 (26%)
Query: 4 APHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEYAY- 62
AP ++ ++ I ++ ++K S F + FH+ + ++ I L ++ ++
Sbjct: 398 APSGLD-QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI-----NKDLVKNNVSFN 451
Query: 63 QSQVKTAKAQEGGYFDEEIVPVVISTRKG-DVVVAKDEYPKANTSVDALQKLRPV-FQKD 120
++ +P V T G D+ V + VD + +L PV ++
Sbjct: 452 AKDIQ--------------IP-VYDTFDGSDLRVLSGSISER--IVDCIIRL-PVKWET- 492
Query: 121 GTVTAGNASGIND---GAAAGKLYLFTR----KG-DVVVA-------KDEY 156
T A+ I D G A+G L R G V+VA D+Y
Sbjct: 493 --TTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 7e-06
Identities = 63/378 (16%), Positives = 111/378 (29%), Gaps = 118/378 (31%)
Query: 76 YFDEEIVPVVISTRKGDV-----------VVAKDEYPKANTSVDALQKLRPVF------Q 118
Y ++I+ V + +++K+E S DA+ +F Q
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 119 KD------GTVTAGN----ASGI----NDGAAAGKLYLFTRK---GDVVVAKDEYPKANT 161
++ V N S I + ++Y+ R D V + K N
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV----FAKYNV 131
Query: 162 T--------VEALQKLRPVFQKDGTVTAGNASGINDG----AAAVLLMSYKRAQARNIQP 209
+ +AL +LRP + G G G A V L SYK + +
Sbjct: 132 SRLQPYLKLRQALLELRPA---KNVLIDGVL-GS--GKTWVALDVCL-SYKVQCKMDFK- 183
Query: 210 LARIA-IKSGDATAIVAGGQECMSQAPHVI-----NIRNGIKLNDAEMKDSMVFDGLTDA 263
I + C S P + + I N D
Sbjct: 184 ---IFWLNLK----------NCNS--PETVLEMLQKLLYQIDPNWTSRSDHSS------- 221
Query: 264 FHNIHMGITAENIAKKWSISRLEQDEYAYQS------QVKTAKAQEGGYFDEEIVPVVIS 317
NI + I + + + RL + + Y++ V+ AKA F+ ++++
Sbjct: 222 --NIKLRI---HSIQAE-LRRLLKSK-PYENCLLVLLNVQNAKAWN--AFNLS-CKILLT 271
Query: 318 TRKGDVVVAKDEYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKT-- 375
TR V D A TT +L D + L +
Sbjct: 272 TR--FKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSL---------LLKYLDCRPQDLP 319
Query: 376 AQARNIQPLARIVAMSSA 393
+ P +++ +
Sbjct: 320 REVLTTNPRR--LSIIAE 335
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 39.8 bits (94), Expect = 0.001
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 363 DGAAAVLLMSYKTAQARNIQPLARIV--AMSSAG---VEPTLMGTGPIPAVNAVLAKAGW 417
+ A +L+ + + A+AR +PLAR++ ++S V P G A+ L AG
Sbjct: 241 EAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGL 300
Query: 418 SKEEVGYFNRVATS 431
S ++ + N T+
Sbjct: 301 SPADIDHVNAHGTA 314
Score = 31.3 bits (72), Expect = 0.65
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 189 DGAAAVLLMSYKRAQARNIQPLARIA--IKSGDATAIVA------GGQECMSQA 234
+ A +L+ + + A+AR +PLAR+ + DA +VA M+++
Sbjct: 241 EAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRS 294
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 39.4 bits (93), Expect = 0.002
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 363 DGAAAVLLMSYKTAQARNIQPLARIV--AMSSAG---VEPTLMGTGPIPAVNAVLAKAGW 417
+G A +L+ + + A+AR LARI+ +++S G V P G A+ + AG
Sbjct: 258 EGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAGL 317
Query: 418 SKEEVGYFNRVATS 431
+ ++ + N AT
Sbjct: 318 APGDIDHVNAHATG 331
Score = 31.3 bits (72), Expect = 0.60
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 189 DGAAAVLLMSYKRAQARNIQPLARIA--IKSGDATAIVA------GGQECMSQA 234
+G A +L+ + + A+AR LARI + D +VA +++A
Sbjct: 258 EGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRA 311
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 37.9 bits (88), Expect = 0.006
Identities = 21/180 (11%), Positives = 36/180 (20%), Gaps = 62/180 (34%)
Query: 304 GGYFDEEIVPVVI---------STRKGDVVVAKDEYPKANTTVEALQKLRPVFQK--DGT 352
GGY ++ S + P + RP +G
Sbjct: 1131 GGY--DDFQEEGSFEFGNMKATSNTLEEF--EHGRTPAEMS--------RP-ATTTRNGF 1177
Query: 353 VTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIV------------------------ 388
+ A GA ++M A + +
Sbjct: 1178 MEA-------QGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTA 1230
Query: 389 -AMSSAGVEPTLMGTGPIPAVNAVLAKAG---WSKEEVGYFNRVATS---GGIANRRQER 441
S+ + V +A W + E+ A ER
Sbjct: 1231 REHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLER 1290
Score = 34.9 bits (80), Expect = 0.057
Identities = 36/277 (12%), Positives = 65/277 (23%), Gaps = 96/277 (34%)
Query: 170 RPVFQK--DGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARIAI--KSGDA--TAI 223
RP +G + A GA ++M A + +A+ + D ++
Sbjct: 1168 RP-ATTTRNGFMEA-------QGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSV 1219
Query: 224 VAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSIS 283
A G+ GI E S+ + +
Sbjct: 1220 PAPGK--------------GILTTAREHHSSVKYASPNLNMKYRKRQLVTRE-------- 1257
Query: 284 RLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKL 343
+Q+K E E D ++E+
Sbjct: 1258 ----------AQIKDWVENELEALKLE----AEEIPSED----QNEF------------- 1286
Query: 344 RPVFQKDGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTG 403
+ +T + N A G
Sbjct: 1287 ---------------------------LLERTREIHNEAESQLRAAQQQWG-NDFYKRDP 1318
Query: 404 PIPAVNAVLAKAGWSKEEVGYFNRVATSGGIANRRQE 440
I + LA G + +++G + TS AN + E
Sbjct: 1319 RIAPLRGALATYGLTIDDLGVASFHGTSTK-ANDKNE 1354
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 37.5 bits (88), Expect = 0.006
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 363 DGAAAVLLMSYKTAQARN-IQPLARIV--AMSSAGVEPTLMGTGPIPAVNAVLAKAGWSK 419
+G A ++L A+AR + A + + G A+ L AG
Sbjct: 237 EGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRPAGLERAIRLALNDAGTGP 296
Query: 420 EEVGYFNRVATS 431
E+V
Sbjct: 297 EDVDVVFADGAG 308
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 37.5 bits (88), Expect = 0.006
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 363 DGAAAVLLMSYKTAQARNIQPLARIVA------MSSAG---VEPTLMGTGPIPAVNAVLA 413
DGA ++L Y+ A+ R A+I A MSS P G G A+ L
Sbjct: 248 DGAGMLVLEEYEHAKKRG----AKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALR 303
Query: 414 KAGWSKEEVGYFNRVATS 431
AG ++GY N TS
Sbjct: 304 DAGIEASQIGYVNAHGTS 321
Score = 28.7 bits (65), Expect = 4.5
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 19/76 (25%)
Query: 189 DGAAAVLLMSYKRAQARNIQPLARIA--IKSGDATAIVA------GGQECMSQAPHVINI 240
DGA ++L Y+ A+ R + A + S DA + + G M+ A
Sbjct: 248 DGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANA------ 301
Query: 241 RNGIKLNDAEMKDSMV 256
L DA ++ S +
Sbjct: 302 -----LRDAGIEASQI 312
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 37.5 bits (88), Expect = 0.007
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 363 DGAAAVLLMSYKTAQARNIQPLARIV--AMSSAG---VEPTLMGTGPIPAVNAVLAKAGW 417
+G+ ++L ++A AR + +V AM+ P G G A+ L +G
Sbjct: 237 EGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGL 296
Query: 418 SKEEVGYFNRVATS 431
E V Y N TS
Sbjct: 297 KPEMVSYINAHGTS 310
Score = 28.3 bits (64), Expect = 5.2
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 19/76 (25%)
Query: 189 DGAAAVLLMSYKRAQARNIQPLARIA--IKSGDATAIVA------GGQECMSQAPHVINI 240
+G+ ++L + A AR + + + DA I A G ++ A
Sbjct: 237 EGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWA------ 290
Query: 241 RNGIKLNDAEMKDSMV 256
L D+ +K MV
Sbjct: 291 -----LKDSGLKPEMV 301
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 37.5 bits (88), Expect = 0.007
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 363 DGAAAVLLMSYKTAQARNIQPLARIVA------MSSAG---VEPTLMGTGPIPAVNAVLA 413
+GA ++L +Y+ A+ R ARI A S+ EP G G A+ L
Sbjct: 231 EGAGVLVLEAYEHAKKRG----ARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALK 286
Query: 414 KAGWSKEEVGYFNRVATS 431
AG + E+VGY N TS
Sbjct: 287 DAGIAPEQVGYINAHGTS 304
Score = 28.2 bits (64), Expect = 6.0
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 19/76 (25%)
Query: 189 DGAAAVLLMSYKRAQARNIQPLARIA--IKSGDATAIVA------GGQECMSQAPHVINI 240
+GA ++L +Y+ A+ R + A + +S DA I G M++A
Sbjct: 231 EGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARA------ 284
Query: 241 RNGIKLNDAEMKDSMV 256
L DA + V
Sbjct: 285 -----LKDAGIAPEQV 295
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 37.5 bits (88), Expect = 0.008
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 363 DGAAAVLLMSYKTAQARNIQPLARIV--AMSSAG---VEPTLMGTGPIPAVNAVLAKAGW 417
+GA +++ S ++AQAR A IV + P G G A+ A + AG
Sbjct: 257 EGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGI 316
Query: 418 SKEEVGYFNRVATS 431
++V Y N TS
Sbjct: 317 EPKDVQYLNAHGTS 330
Score = 28.7 bits (65), Expect = 4.8
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 19/76 (25%)
Query: 189 DGAAAVLLMSYKRAQARNIQPLARIA--IKSGDATAIVA------GGQECMSQAPHVINI 240
+GA +++ S + AQAR A I +GDA I A GG M A
Sbjct: 257 EGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAA------ 310
Query: 241 RNGIKLNDAEMKDSMV 256
++DA ++ V
Sbjct: 311 -----MDDAGIEPKDV 321
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 37.5 bits (88), Expect = 0.008
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 363 DGAAAVLLMSYKTAQARNIQPLARIV--AMSSAG---VEPTLMGTGPIPAVNAVLAKAGW 417
+GA V+L Y+ A+AR + A IV + P G G A+ + AG
Sbjct: 233 EGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAGL 292
Query: 418 SKEEVGYFNRVATS 431
+ ++V Y N TS
Sbjct: 293 TPDKVDYINAHGTS 306
Score = 28.3 bits (64), Expect = 5.2
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 19/76 (25%)
Query: 189 DGAAAVLLMSYKRAQARNIQPLARIA--IKSGDATAIVA------GGQECMSQAPHVINI 240
+GA V+L Y+ A+AR + A I +GDA I A G M A
Sbjct: 233 EGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMA------ 286
Query: 241 RNGIKLNDAEMKDSMV 256
++DA + V
Sbjct: 287 -----IDDAGLTPDKV 297
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 36.8 bits (86), Expect = 0.013
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 363 DGAAAVLLMSYKTAQARNIQPLARIV--AMSS-AG--VEPTLMGTGPIPAVNAVLAKAGW 417
+GAA V++ S A AR +P+A I+ ++ A G+G + A+ L
Sbjct: 264 EGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGDV 323
Query: 418 SKEEVGYFNRVATS 431
+ E+V Y N ATS
Sbjct: 324 APEQVDYVNAHATS 337
Score = 29.4 bits (67), Expect = 2.2
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 19/76 (25%)
Query: 189 DGAAAVLLMSYKRAQARNIQPLARIA--IKSGDATAIVA------GGQECMSQAPHVINI 240
+GAA V++ S A AR +P+A I + DA + A G M A
Sbjct: 264 EGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLA------ 317
Query: 241 RNGIKLNDAEMKDSMV 256
L ++ V
Sbjct: 318 -----LRMGDVAPEQV 328
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 36.3 bits (85), Expect = 0.017
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 363 DGAAAVLLMSYKTAQARNIQPLARIV--AMSS-AG--VEPTLMGTGPIPAVNAVLAKAGW 417
+GA V+L + A AR + A ++ MS A PT G G + A L +AG
Sbjct: 249 EGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALKRAGI 308
Query: 418 SKEEVGYFNRVATS 431
+E+ Y N TS
Sbjct: 309 VPDEIDYINAHGTS 322
Score = 29.4 bits (67), Expect = 2.7
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 19/76 (25%)
Query: 189 DGAAAVLLMSYKRAQARNIQPLARIA--IKSGDATAIVA------GGQECMSQAPHVINI 240
+GA V+L + A AR + A + SGDA I A G Q CM A
Sbjct: 249 EGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAA------ 302
Query: 241 RNGIKLNDAEMKDSMV 256
L A + +
Sbjct: 303 -----LKRAGIVPDEI 313
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 36.4 bits (85), Expect = 0.018
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 363 DGAAAVLLMSYKTAQARNIQPLARIV--AMSS-AG--VEPTLMGTGPIPAVNAVLAKAGW 417
+GAA ++L Y+ A R + A ++ +S AG P G G + + A L AG
Sbjct: 257 EGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGV 316
Query: 418 SKEEVGYFNRVATS 431
EE+ Y N ATS
Sbjct: 317 QPEEISYINAHATS 330
Score = 29.4 bits (67), Expect = 2.5
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 19/76 (25%)
Query: 189 DGAAAVLLMSYKRAQARNIQPLARIA--IKSGDATAIVA------GGQECMSQAPHVINI 240
+GAA ++L Y+ A R + A + SGDA I A G CM+ A
Sbjct: 257 EGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAA------ 310
Query: 241 RNGIKLNDAEMKDSMV 256
L DA ++ +
Sbjct: 311 -----LKDAGVQPEEI 321
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 35.9 bits (84), Expect = 0.022
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 363 DGAAAVLLMSYKTAQARNIQPLARIV--AMSSAG---VEPTLMGTGPIPAVNAVLAKAGW 417
+GAA +L Y +A AR + A I A G + L ++
Sbjct: 239 EGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRT 298
Query: 418 SKEEVGYFNRVATS 431
++ Y N +
Sbjct: 299 DATDIDYINAHGSG 312
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 35.9 bits (84), Expect = 0.025
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 363 DGAAAVLLMSYKTAQARNIQPLARIVA------MSSAG---VEPTLMGTGPIPAVNAVLA 413
+G+ ++L S + A+ R A I+A + P G G I A+ L
Sbjct: 252 EGSGMLVLESLEHAEKRG----ATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALE 307
Query: 414 KAGWSKEEVGYFNRVATS 431
+A S E+V Y N TS
Sbjct: 308 EAEISPEQVAYVNAHGTS 325
Score = 27.9 bits (63), Expect = 7.6
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 19/76 (25%)
Query: 189 DGAAAVLLMSYKRAQARNIQPLARIA--IKSGDATAIVA------GGQECMSQAPHVINI 240
+G+ ++L S + A+ R LA + + DA + + G + + A
Sbjct: 252 EGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLA------ 305
Query: 241 RNGIKLNDAEMKDSMV 256
L +AE+ V
Sbjct: 306 -----LEEAEISPEQV 316
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 35.6 bits (83), Expect = 0.031
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 363 DGAAAVLLMSYKTAQARNIQPLARIV--AMSSAG---VEPTLMGTGPIPAVNAVLAKAGW 417
+G+ ++L Y+ A+ R + A + MS +P G G + A+ L ++G
Sbjct: 250 EGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGL 309
Query: 418 SKEEVGYFNRVATS 431
++ Y N ATS
Sbjct: 310 CPNQIDYVNAHATS 323
Score = 29.5 bits (67), Expect = 2.1
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 19/76 (25%)
Query: 189 DGAAAVLLMSYKRAQARNIQPLARIA--IKSGDATAIVA------GGQECMSQAPHVINI 240
+G+ ++L Y+ A+ R + A + SGDA I G M++A
Sbjct: 250 EGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRA------ 303
Query: 241 RNGIKLNDAEMKDSMV 256
L + + + +
Sbjct: 304 -----LRQSGLCPNQI 314
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 34.8 bits (81), Expect = 0.053
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
Query: 361 INDGAAAVLLMSYKTAQARNIQPLARIVA------MSSAG---VEPTLMGTGPIPAVNAV 411
+ +GAA ++L Y+ A+AR A I A +S G +PT + A+
Sbjct: 235 VGEGAATLVLEEYEHAKARG----ATIHAEIVGFGCNSDGAHMTQPT--ASTMARAMQLA 288
Query: 412 LAKAGWSKEEVGYFNRVATS 431
L A + Y N TS
Sbjct: 289 LEDAKLDANAIAYVNAHGTS 308
Score = 28.6 bits (65), Expect = 3.8
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 17/76 (22%)
Query: 187 INDGAAAVLLMSYKRAQARNIQPLARIA--IKSGDATAIVA----GGQECMSQAPHVINI 240
+ +GAA ++L Y+ A+AR A I + D + M A
Sbjct: 235 VGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQPTASTMARAMQLA------ 288
Query: 241 RNGIKLNDAEMKDSMV 256
L DA++ + +
Sbjct: 289 -----LEDAKLDANAI 299
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 31.4 bits (71), Expect = 0.66
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 4/73 (5%)
Query: 363 DGAAAVLLMSYKTAQARNIQPLARIVAMSSA----GVEPTLMGTGPIPAVNAVLAKAGWS 418
G ++M+ + A + + S+A G G G +
Sbjct: 1355 QGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQGVLTTAREKSGNFPSP 1414
Query: 419 KEEVGYFNRVATS 431
++ Y R
Sbjct: 1415 LLDIKYRRRQLEL 1427
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of
LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar
abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 30.2 bits (69), Expect = 1.3
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 18/60 (30%)
Query: 187 INDGAAAVLLMSYKRAQARNIQPLARI--------AIKSGDATAIVA----GGQECMSQA 234
I GA ++L + A AR A+I A + D +VA G CM A
Sbjct: 250 IAGGAGVLVLEDLETALARG----AKIYGEIVGYGA--TSDGYDMVAPSGEGAIRCMKMA 303
Score = 29.8 bits (68), Expect = 2.0
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 18/80 (22%)
Query: 361 INDGAAAVLLMSYKTAQARNIQPLARIVA------MSSAG---VEPTLMGTGPIPAVNAV 411
I GA ++L +TA AR A+I +S G V P+ G G I +
Sbjct: 250 IAGGAGVLVLEDLETALARG----AKIYGEIVGYGATSDGYDMVAPS--GEGAIRCMKMA 303
Query: 412 LAKAGWSKEEVGYFNRVATS 431
L+ ++ Y N ATS
Sbjct: 304 LSTVT---SKIDYINPHATS 320
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic,
transferase, amino-thiazole, acyltransferase, lipid
synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP:
c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A*
2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A
1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A*
2cf2_A 2byw_A ...
Length = 406
Score = 30.2 bits (69), Expect = 1.6
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 18/60 (30%)
Query: 187 INDGAAAVLLMSYKRAQARNIQPLARI--------AIKSGDATAIVA----GGQECMSQA 234
I G V++ + A AR A I A + D +VA G CM A
Sbjct: 231 IAGGGGMVVVEELEHALARG----AHIYAEIVGYGA--TSDGADMVAPSGEGAVRCMKMA 284
Score = 29.4 bits (67), Expect = 2.4
Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 18/80 (22%)
Query: 361 INDGAAAVLLMSYKTAQARNIQPLARIVA------MSSAG---VEPTLMGTGPIPAVNAV 411
I G V++ + A AR A I A +S G V P+ G G + +
Sbjct: 231 IAGGGGMVVVEELEHALARG----AHIYAEIVGYGATSDGADMVAPS--GEGAVRCMKMA 284
Query: 412 LAKAGWSKEEVGYFNRVATS 431
+ + Y N TS
Sbjct: 285 MHGVD---TPIDYLNSHGTS 301
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.7
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 13/39 (33%)
Query: 377 QARNIQPLA---RIVAMSSAGVEPTLMGTGPIPAVNAVL 412
+ + ++ L ++ A SA P L A+ A +
Sbjct: 18 EKQALKKLQASLKLYADDSA---PAL-------AIKATM 46
Score = 28.4 bits (62), Expect = 2.9
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 35/63 (55%)
Query: 278 KKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPK-A-NT 335
+K ++ +L+ + +K Y A D P A
Sbjct: 18 EKQALKKLQ-------ASLKL-------Y-------------------ADDSAPALAIKA 44
Query: 336 TVE 338
T+E
Sbjct: 45 TME 47
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys
peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces
cerevisiae} SCOP: c.47.1.10
Length = 159
Score = 28.0 bits (63), Expect = 3.9
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 156 YPKANT---TVEA--LQKLRPVFQKDGTV 179
YP+A+T T +A + ++ V
Sbjct: 43 YPRASTPGSTRQASGFRDNYQELKEYAAV 71
Score = 28.0 bits (63), Expect = 3.9
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 330 YPKANT---TVEA--LQKLRPVFQKDGTV 353
YP+A+T T +A + ++ V
Sbjct: 43 YPRASTPGSTRQASGFRDNYQELKEYAAV 71
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme,
dockerin type I\:polysaccharide...; acetyl-xylan,
esterases, metal-ION; 1.05A {Clostridium thermocellum}
SCOP: c.6.2.3 PDB: 2c79_A
Length = 216
Score = 28.0 bits (63), Expect = 5.2
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 309 EEIVPVVIS-TRKGDVVVAKDEYPKANTTVEALQKLRPVFQKDG 351
E+ VI+ R G +++ D P+ + T EAL + P + G
Sbjct: 136 EQRAAAVINGVRDGTIILLHDVQPEPHPTPEALDIIIPTLKSRG 179
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.360
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,806,165
Number of extensions: 441107
Number of successful extensions: 935
Number of sequences better than 10.0: 1
Number of HSP's gapped: 864
Number of HSP's successfully gapped: 101
Length of query: 441
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 345
Effective length of database: 4,021,377
Effective search space: 1387375065
Effective search space used: 1387375065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.3 bits)