RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4157
(441 letters)
>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera
[TaxId: 350]}
Length = 268
Score = 184 bits (469), Expect = 4e-56
Identities = 99/199 (49%), Positives = 130/199 (65%), Gaps = 1/199 (0%)
Query: 181 AGNASGINDGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAIVAGGQECMSQAPHVINI 240
A +G+ A A + + R + L I +GDA+ IVAGG E MS APH ++
Sbjct: 70 AAMKAGVPQEATAWGMNQLAGSGLRAV-ALGMQQIATGDASIIVAGGMESMSMAPHCAHL 128
Query: 241 RNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEYAYQSQVKTAK 300
R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +A SQ K
Sbjct: 129 RGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEA 188
Query: 301 AQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKLRPVFQKDGTVTAGNASG 360
AQ+ G F +EIVP ++ RKGD+ V DEY + T++++ KLRP F K+GTVTAGNASG
Sbjct: 189 AQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASG 248
Query: 361 INDGAAAVLLMSYKTAQAR 379
+NDGAAA LLMS A R
Sbjct: 249 LNDGAAAALLMSEAEASRR 267
Score = 161 bits (407), Expect = 4e-47
Identities = 77/137 (56%), Positives = 101/137 (73%)
Query: 1 MSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEY 60
MS APH ++R G+K+ D +M D+M+ DGLTDAF+ HMG TAEN+AK+W +SR EQD +
Sbjct: 119 MSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 61 AYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD 120
A SQ K AQ+ G F +EIVP ++ RKGD+ V DEY + ++D++ KLRP F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 121 GTVTAGNASGINDGAAA 137
GTVTAGNASG+NDGAAA
Sbjct: 239 GTVTAGNASGLNDGAAA 255
Score = 94.4 bits (234), Expect = 1e-22
Identities = 37/62 (59%), Positives = 45/62 (72%)
Query: 144 TRKGDVVVAKDEYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKRAQ 203
RKGD+ V DEY + T++++ KLRP F K+GTVTAGNASG+NDGAAA LLMS A
Sbjct: 206 GRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEAS 265
Query: 204 AR 205
R
Sbjct: 266 RR 267
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 273
Score = 144 bits (363), Expect = 1e-40
Identities = 73/207 (35%), Positives = 110/207 (53%), Gaps = 7/207 (3%)
Query: 181 AGNASGINDGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAIVAGGQECMSQAPHVI-N 239
A +G A + + + A AI +G+ + G E MS+AP+ +
Sbjct: 68 ALLLAGFPVEVAGCTVNRLCGSGLEAVA-QAARAIWAGEGKVYIGSGVESMSRAPYAVPK 126
Query: 240 IRNGIKLNDAEMKDS-----MVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEYAYQS 294
G + M D+ V + + MG TAEN+A+ + I R EQD +A S
Sbjct: 127 PERGFPTGNLVMYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRREEQDRFALLS 186
Query: 295 QVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTTVEALQKLRPVFQKDGTVT 354
K +A E G F +E+VPV + K +++V +DE P+ +T++E L LRPVF++ GTVT
Sbjct: 187 HQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQDEGPRRDTSLEKLAALRPVFREGGTVT 246
Query: 355 AGNASGINDGAAAVLLMSYKTAQARNI 381
AGN+S +NDGAAAVLL+S A+A +
Sbjct: 247 AGNSSPLNDGAAAVLLVSDDYAKAHGL 273
Score = 115 bits (288), Expect = 5e-30
Identities = 63/166 (37%), Positives = 94/166 (56%), Gaps = 17/166 (10%)
Query: 1 MSQAPHVI-NIRNGIKLNDAEMKDS-----MVFDGLTDAFHNIHMGITAENIAKKWSISR 54
MS+AP+ + G + M D+ V + + MG TAEN+A+ + I R
Sbjct: 117 MSRAPYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRR 176
Query: 55 LEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKANTSVDALQKLR 114
EQD +A S K +A E G F +E+VPV + K +++V +DE P+ +TS++ L LR
Sbjct: 177 EEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQDEGPRRDTSLEKLAALR 236
Query: 115 PVFQKDGTVTAGNASGINDGAAAGKLYLFTRKGDVVVAKDEYPKAN 160
PVF++ GTVTAGN+S +NDGAAA V++ D+Y KA+
Sbjct: 237 PVFREGGTVTAGNSSPLNDGAAA-----------VLLVSDDYAKAH 271
Score = 94.1 bits (233), Expect = 3e-22
Identities = 33/65 (50%), Positives = 48/65 (73%)
Query: 143 FTRKGDVVVAKDEYPKANTTVEALQKLRPVFQKDGTVTAGNASGINDGAAAVLLMSYKRA 202
K +++V +DE P+ +T++E L LRPVF++ GTVTAGN+S +NDGAAAVLL+S A
Sbjct: 209 KRGKEEILVEQDEGPRRDTSLEKLAALRPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYA 268
Query: 203 QARNI 207
+A +
Sbjct: 269 KAHGL 273
>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 269
Score = 124 bits (313), Expect = 2e-33
Identities = 59/165 (35%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 214 AIKSGDATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMGITA 273
IK G +A G E M+ +N + + I MGIT
Sbjct: 114 KIKVGQIDIGLALGVESMTNNYKNVNPLGM-------ISSEELQKNREAKKCLIPMGITN 166
Query: 274 ENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVAKDEYPKA 333
EN+A + ISR +QDE+A S K KA+ G F++EI+P+ + + DE P+
Sbjct: 167 ENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGS---ICQSDEGPRP 223
Query: 334 NTTVEALQKLRPVFQKD-GTVTAGNASGINDGAAAVLLMSYKTAQ 377
N T E+L +RP F KD GT TAGNAS ++DG A VLL A
Sbjct: 224 NVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVAN 268
Score = 108 bits (270), Expect = 2e-27
Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Query: 21 MKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEE 80
+ + I MGIT EN+A + ISR +QDE+A S K KA+ G F++E
Sbjct: 144 ISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDE 203
Query: 81 IVPVVISTRKGDVVVAKDEYPKANTSVDALQKLRPVFQKD-GTVTAGNASGINDGAAA 137
I+P+ + + DE P+ N + ++L +RP F KD GT TAGNAS ++DG A
Sbjct: 204 ILPIKLPDGS---ICQSDEGPRPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAG 258
Score = 87.6 bits (216), Expect = 3e-20
Identities = 27/55 (49%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 150 VVAKDEYPKANTTVEALQKLRPVFQKD-GTVTAGNASGINDGAAAVLLMSYKRAQ 203
+ DE P+ N T E+L +RP F KD GT TAGNAS ++DG A VLL A
Sbjct: 214 ICQSDEGPRPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVAN 268
>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 262
Score = 115 bits (288), Expect = 4e-30
Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 14/170 (8%)
Query: 211 ARIAIKSGDATAIVAGGQECMSQAPHVINIRNGIKLNDAEMKDSMVFDGLTDAFHNIHMG 270
A AI +G+ V GG E M + D L A + MG
Sbjct: 104 AAQAIMTGNGDVFVVGGVEHMGHVSMMH------------GVDPNPHMSLYAAKASGMMG 151
Query: 271 ITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEEIVPVVISTRKGDVVVA-KDE 329
+TAE + K ISR +QD +A +S KA G F +EI+P+ G + + DE
Sbjct: 152 LTAEMLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDE 211
Query: 330 YPKANTTVEALQKLRPVFQ-KDGTVTAGNASGINDGAAAVLLMSYKTAQA 378
+ +TT+E+L L+P F K GTVTAG +S I DGA+ +++MS + A+
Sbjct: 212 TIRPDTTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKD 261
Score = 95.0 bits (235), Expect = 9e-23
Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Query: 21 MKDSMVFDGLTDAFHNIHMGITAENIAKKWSISRLEQDEYAYQSQVKTAKAQEGGYFDEE 80
D L A + MG+TAE + K ISR +QD +A +S KA G F +E
Sbjct: 132 GVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDE 191
Query: 81 IVPVVISTRKGDVVVA-KDEYPKANTSVDALQKLRPVFQ-KDGTVTAGNASGINDGAAA 137
I+P+ G + + DE + +T++++L L+P F K GTVTAG +S I DGA+
Sbjct: 192 IIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQITDGASC 250
Score = 84.6 bits (208), Expect = 4e-19
Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 154 DEYPKANTTVEALQKLRPVFQ-KDGTVTAGNASGINDGAAAVLLMSYKRAQA 204
DE + +TT+E+L L+P F K GTVTAG +S I DGA+ +++MS +RA+
Sbjct: 210 DETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKD 261
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea
ramigera [TaxId: 350]}
Length = 124
Score = 57.6 bits (139), Expect = 5e-11
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 381 IQPLARIVAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
IQPL RIV+ ++ GV+P +MGTGPIPA L +AGW ++
Sbjct: 1 IQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLV 45
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 124
Score = 56.5 bits (136), Expect = 2e-10
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 380 NIQPLARIVAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
N+ L R + + GV P +MG GP A+ VL G +++ F
Sbjct: 2 NLPVLGRYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIF 47
>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 128
Score = 52.4 bits (125), Expect = 4e-09
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 381 IQPLARIVAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
++PLA I +M+ AGV+P +MG GP+PA L +AG + ++ +
Sbjct: 2 LEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADIDFI 46
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 51.5 bits (123), Expect = 7e-09
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 383 PLARIVAMSSAGVEPTLMGTGPIPAVNAVLAKAGWSKEEVGYF 425
PLAR+ A++ AGV P +MG GP+PA L +AG S ++G
Sbjct: 2 PLARVRAIAVAGVPPRIMGIGPVPATRKALERAGLSFSDLGLI 44
>d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 205
Score = 28.6 bits (63), Expect = 1.1
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 2/89 (2%)
Query: 183 NASGIN--DGAAAVLLMSYKRAQARNIQPLARIAIKSGDATAIVAGGQECMSQAPHVINI 240
G +GAA +L Y A AR + A I+ + A G + +
Sbjct: 13 TRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIR 72
Query: 241 RNGIKLNDAEMKDSMVFDGLTDAFHNIHM 269
+ + + N
Sbjct: 73 VALDESRTDATDIDYINAHGSGTRQNDRH 101
Score = 27.5 bits (60), Expect = 2.5
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 357 NASGIN--DGAAAVLLMSYKTAQARNIQPLARIV 388
G +GAA +L Y +A AR + A I
Sbjct: 13 TRDGFVLAEGAAMFVLEDYDSALARGARIHAEIS 46
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 270
Score = 28.1 bits (61), Expect = 2.0
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 11/38 (28%)
Query: 176 DGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARI 213
DG V +G+ ++L Y+ A+ R A+I
Sbjct: 244 DGFVIG-------EGSGVIVLEEYEHAKRRG----AKI 270
Score = 27.3 bits (59), Expect = 3.9
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 11/38 (28%)
Query: 350 DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARI 387
DG V +G+ ++L Y+ A+ R A+I
Sbjct: 244 DGFVIG-------EGSGVIVLEEYEHAKRRG----AKI 270
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 253
Score = 28.0 bits (61), Expect = 2.3
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 11/38 (28%)
Query: 176 DGTVTAGNASGINDGAAAVLLMSYKRAQARNIQPLARI 213
DG V A G V++ + A AR A I
Sbjct: 227 DGFVIA-------GGGGMVVVEELEHALARG----AHI 253
Score = 26.9 bits (58), Expect = 5.0
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 11/38 (28%)
Query: 350 DGTVTAGNASGINDGAAAVLLMSYKTAQARNIQPLARI 387
DG V A G V++ + A AR A I
Sbjct: 227 DGFVIA-------GGGGMVVVEELEHALARG----AHI 253
>d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain
{Clostridium thermocellum [TaxId: 1515]}
Length = 204
Score = 27.5 bits (60), Expect = 2.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 144 TRKGDVVVAKDEYPKANTTVEALQKLRPVFQKDG 177
R G +++ D P+ + T EAL + P + G
Sbjct: 142 VRDGTIILLHDVQPEPHPTPEALDIIIPTLKSRG 175
Score = 27.5 bits (60), Expect = 2.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 318 TRKGDVVVAKDEYPKANTTVEALQKLRPVFQKDG 351
R G +++ D P+ + T EAL + P + G
Sbjct: 142 VRDGTIILLHDVQPEPHPTPEALDIIIPTLKSRG 175
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 250
Score = 26.8 bits (58), Expect = 4.5
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 176 DGTVTAGNASGINDGAAAVLLMSYKRAQAR 205
DG V +G+ ++L + A AR
Sbjct: 226 DGFVMG-------EGSGILILEELESALAR 248
>d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 194
Score = 26.4 bits (57), Expect = 5.8
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 357 NASGIN--DGAAAVLLMSYKTAQARNIQPLARIVAMSSAGVEPTLMGTGPIPA 407
A+G +G A ++L A+AR +A ++ +P P
Sbjct: 12 RAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRPAGL 64
>d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 256
Score = 26.4 bits (57), Expect = 7.1
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 176 DGTVTAGNASGINDGAAAVLLMSYKRAQAR 205
+G V +G+ ++L S + A+ R
Sbjct: 232 NGFVMG-------EGSGMLVLESLEHAEKR 254
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 216
Score = 26.2 bits (56), Expect = 7.6
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 210 LARIAIKSGDATAIVAGGQECM 231
A AI+ G A + AG +
Sbjct: 176 NAVRAIEEGSADVMFAGAADTP 197
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 26.3 bits (57), Expect = 8.1
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 176 DGTVTAGNASGINDGAAAVLLMSYKRAQAR 205
DG V DGA ++L Y+ A+ R
Sbjct: 226 DGFVLG-------DGAGMLVLEEYEHAKKR 248
>d1w0pa2 b.29.1.8 (A:347-543) Vibrio cholerae sialidase, N-terminal
and insertion domains {Vibrio cholerae [TaxId: 666]}
Length = 197
Score = 25.7 bits (56), Expect = 9.2
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 122 TVTAGNASGINDGAAAGKLYLFTRKGDVVVAKD 154
+ GNA DG + + T++G +V D
Sbjct: 129 NIQFGNADAQIDGRLHVQKIVLTQQGHNLVEFD 161
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.129 0.360
Gapped
Lambda K H
0.267 0.0434 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,563,962
Number of extensions: 72404
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 33
Length of query: 441
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 353
Effective length of database: 1,199,356
Effective search space: 423372668
Effective search space used: 423372668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.3 bits)