BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4159
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DHM|A Chain A, Solution Structure Of The Bola Protein From Escherichia
Coli
Length = 107
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 3 ASSQVTKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQF 62
SS + I +IE L P ++V++ES+ H + SE SHFK+V+VS +F
Sbjct: 1 GSSGSSGMMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSE-----SHFKVVLVSDRF 55
Query: 63 ENKPFIAK 70
+ F+ +
Sbjct: 56 TGERFLNR 63
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 69 AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFI 115
A P ++V++ES+ H + SE SHFK+V+VS +F + F+
Sbjct: 20 AAFQPVFLEVVDESYRHNVPAGSE-----SHFKVVLVSDRFTGERFL 61
>pdb|1V60|A Chain A, Solution Structure Of Bola1 Protein From Mus Musculus
Length = 123
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 2 SASSQVTKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQ 61
++ + I L + L+P +++ NES H + SE +HF++ VVSS+
Sbjct: 17 GSAGSAAAGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAGSE-----THFRVAVVSSR 71
Query: 62 FEN 64
FE
Sbjct: 72 FEG 74
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 18/80 (22%)
Query: 71 LNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFEN-KPFIAFIIILEVTSRCHR 129
L+P +++ NES H + SE +HF++ VVSS+FE P + HR
Sbjct: 39 LSPEVLELRNESGGHAVPAGSE-----THFRVAVVSSRFEGMSPL-----------QRHR 82
Query: 130 LVQGALQDAGIYDIVHAIQI 149
LV AL + + VHA+ I
Sbjct: 83 LVHEALSEE-LAGPVHALAI 101
>pdb|1V9J|A Chain A, Solution Structure Of A Bola-Like Protein From Mus
Musculus
Length = 113
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 20 LTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
L + L H++V + + + S F+++VVS++FE KP + +
Sbjct: 39 LRQDLEAEHVEVEDTTLNRCATS----------FRVLVVSAKFEGKPLLQR 79
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 58 VSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFI 115
+S+ + + L H++V + + + S F+++VVS++FE KP +
Sbjct: 30 LSADYLREKLRQDLEAEHVEVEDTTLNRCATS----------FRVLVVSAKFEGKPLL 77
>pdb|1ZTC|A Chain A, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|B Chain B, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|C Chain C, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|D Chain D, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
Length = 221
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 48 ELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELA---SHFKIVV 104
L +HF VV + + I N S D + E FS GISP + ++ H +
Sbjct: 29 RLNAHFSTVVYLEHKDRRIIIDPGNLSSXDELEEKFSELGISPDDITDVLFTHVHLDHIF 88
Query: 105 VSSQFENKPF 114
S FEN F
Sbjct: 89 NSVLFENATF 98
>pdb|3FSL|A Chain A, Crystal Structure Of Tyrosine Aminotransferase Tripple
Mutant (P181q, R183g,A321k) From Escherichia Coli At
2.35 A Resolution
pdb|3FSL|B Chain B, Crystal Structure Of Tyrosine Aminotransferase Tripple
Mutant (P181q, R183g,A321k) From Escherichia Coli At
2.35 A Resolution
pdb|3FSL|C Chain C, Crystal Structure Of Tyrosine Aminotransferase Tripple
Mutant (P181q, R183g,A321k) From Escherichia Coli At
2.35 A Resolution
pdb|3FSL|D Chain D, Crystal Structure Of Tyrosine Aminotransferase Tripple
Mutant (P181q, R183g,A321k) From Escherichia Coli At
2.35 A Resolution
pdb|3FSL|E Chain E, Crystal Structure Of Tyrosine Aminotransferase Tripple
Mutant (P181q, R183g,A321k) From Escherichia Coli At
2.35 A Resolution
pdb|3FSL|F Chain F, Crystal Structure Of Tyrosine Aminotransferase Tripple
Mutant (P181q, R183g,A321k) From Escherichia Coli At
2.35 A Resolution
Length = 397
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 36 FSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFS 84
FS+TG+S ++ L F + +++S + +A LN +++ + ++F+
Sbjct: 349 FSYTGLSAAQVDRLREEFGVYLIAS---GRMCVAGLNTANVQRVAKAFA 394
>pdb|3TAT|A Chain A, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|B Chain B, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|C Chain C, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|D Chain D, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|E Chain E, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|F Chain F, Tyrosine Aminotransferase From E. Coli
Length = 397
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 36 FSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFS 84
FS+TG+S ++ L F + +++S + +A LN +++ + ++F+
Sbjct: 349 FSYTGLSAAQVDRLREEFGVYLIAS---GRMCVAGLNTANVQRVAKAFA 394
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,581,769
Number of Sequences: 62578
Number of extensions: 167692
Number of successful extensions: 489
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 42
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)