BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4159
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q56585|BOLA_VIBAL Protein BolA homolog OS=Vibrio alginolyticus GN=bolA PE=3 SV=1
Length = 102
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 16 IENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSH 75
IE L +L PS++ VINES+ H + P E SHFK++VVS F + I + H
Sbjct: 6 IEKKLHSELQPSYLKVINESYMHN-VPPGSE----SHFKVIVVSDSFAGQRLIGRHRQVH 60
Query: 76 IDVINESFSH 85
+ +E +H
Sbjct: 61 QILADELDNH 70
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 65 KPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIA 116
K ++L PS++ VINES+ H + P E SHFK++VVS F + I
Sbjct: 8 KKLHSELQPSYLKVINESYMHN-VPPGSE----SHFKVIVVSDSFAGQRLIG 54
>sp|P29943|YCB1_PSEDE Uncharacterized protein in cobS 5'region OS=Pseudomonas
denitrificans PE=3 SV=1
Length = 93
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 12 ITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
+T IE L + +P ++VINES HTG P + SH ++ +VSS F +A+
Sbjct: 3 LTETIEKKLIEAFHPERLEVINESHQHTGHQPGFDGTGESHMRVRIVSSAFAGMSRVAR 61
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 65 KPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVT 124
K I +P ++VINES HTG P + SH ++ +VSS F +A
Sbjct: 9 KKLIEAFHPERLEVINESHQHTGHQPGFDGTGESHMRVRIVSSAFAGMSRVA-------- 60
Query: 125 SRCHRLVQGALQ---DAGIYDIV 144
HR + L+ DAG++ +
Sbjct: 61 --RHRAINDLLKPELDAGLHALA 81
>sp|Q86KD0|Y7416_DICDI BolA-like protein DDB_G0274169 OS=Dictyostelium discoideum
GN=DDB_G0274169 PE=3 SV=1
Length = 114
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%), Gaps = 5/49 (10%)
Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFE 63
+I+ +LTK+LNP ++++INES+ H SE SHFK+ +VS +FE
Sbjct: 10 EIKELLTKELNPINLEIINESYMHNVPKGSE-----SHFKVKIVSEKFE 53
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 15/84 (17%)
Query: 67 FIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSR 126
+LNP ++++INES+ H SE SHFK+ +VS +FE I
Sbjct: 15 LTKELNPINLEIINESYMHNVPKGSE-----SHFKVKIVSEKFETLSMI----------E 59
Query: 127 CHRLVQGALQDAGIYDIVHAIQIV 150
HRLV L++ +HA+ I
Sbjct: 60 QHRLVNEILKNFIGNGKIHALSIT 83
>sp|P0ABE4|BOLA_SHIFL Protein BolA OS=Shigella flexneri GN=bolA PE=3 SV=1
Length = 105
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 12 ITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
I +IE L P ++V++ES+ H + SE SHFK+V+VS +F + F+ +
Sbjct: 3 IRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSE-----SHFKVVLVSDRFTGERFLNR 56
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 69 AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFI 115
A P ++V++ES+ H + SE SHFK+V+VS +F + F+
Sbjct: 13 AAFQPVFLEVVDESYRHNVPAGSE-----SHFKVVLVSDRFTGERFL 54
>sp|P0ABE2|BOLA_ECOLI Protein BolA OS=Escherichia coli (strain K12) GN=bolA PE=1 SV=1
Length = 105
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 12 ITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
I +IE L P ++V++ES+ H + SE SHFK+V+VS +F + F+ +
Sbjct: 3 IRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSE-----SHFKVVLVSDRFTGERFLNR 56
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 69 AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFI 115
A P ++V++ES+ H + SE SHFK+V+VS +F + F+
Sbjct: 13 AAFQPVFLEVVDESYRHNVPAGSE-----SHFKVVLVSDRFTGERFL 54
>sp|P0ABE3|BOLA_ECOL6 Protein BolA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=bolA PE=3 SV=1
Length = 105
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 12 ITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
I +IE L P ++V++ES+ H + SE SHFK+V+VS +F + F+ +
Sbjct: 3 IRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSE-----SHFKVVLVSDRFTGERFLNR 56
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 69 AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFI 115
A P ++V++ES+ H + SE SHFK+V+VS +F + F+
Sbjct: 13 AAFQPVFLEVVDESYRHNVPAGSE-----SHFKVVLVSDRFTGERFL 54
>sp|Q3T138|BOLA1_BOVIN BolA-like protein 1 OS=Bos taurus GN=BOLA1 PE=2 SV=1
Length = 135
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 16/79 (20%)
Query: 71 LNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRL 130
LNP +++ NES H + P E +HF++ VVSS+FE L R HRL
Sbjct: 44 LNPEVLELRNESGGHA-VPPGSE----THFRVAVVSSRFEG---------LSPLQR-HRL 88
Query: 131 VQGALQDAGIYDIVHAIQI 149
V AL + + VHA+ I
Sbjct: 89 VHAALSEE-LAGPVHALAI 106
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 2 SASSQVTKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQ 61
SA S V + I L + LNP +++ NES H + P E +HF++ VVSS+
Sbjct: 23 SAGSGVI-GPVEAAIRTKLEQALNPEVLELRNESGGHA-VPPGSE----THFRVAVVSSR 76
Query: 62 FEN 64
FE
Sbjct: 77 FEG 79
>sp|Q9Y3E2|BOLA1_HUMAN BolA-like protein 1 OS=Homo sapiens GN=BOLA1 PE=1 SV=1
Length = 137
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 16/79 (20%)
Query: 71 LNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRL 130
L+P +++ NES H + P E +HF++ VVSS+FE L R HRL
Sbjct: 44 LSPEVLELRNESGGHA-VPPGSE----THFRVAVVSSRFEG---------LSPLQR-HRL 88
Query: 131 VQGALQDAGIYDIVHAIQI 149
V AL + + VHA+ I
Sbjct: 89 VHAALAEE-LGGPVHALAI 106
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 16 IENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFEN 64
I L + L+P +++ NES H + P E +HF++ VVSS+FE
Sbjct: 36 IRTKLEEALSPEVLELRNESGGHA-VPPGSE----THFRVAVVSSRFEG 79
>sp|Q5RCE5|BOLA1_PONAB BolA-like protein 1 OS=Pongo abelii GN=BOLA1 PE=2 SV=1
Length = 137
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 16/79 (20%)
Query: 71 LNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRL 130
L+P +++ NES H + P E +HF++ VVSS+FE L R HRL
Sbjct: 44 LSPEVLELRNESGGHA-VPPGSE----THFRVAVVSSRFEG---------LSPLQR-HRL 88
Query: 131 VQGALQDAGIYDIVHAIQI 149
+ AL + + VHA+ I
Sbjct: 89 IHAALAEE-LAGPVHALAI 106
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 10 NKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFEN 64
+ I L + L+P +++ NES H + P E +HF++ VVSS+FE
Sbjct: 30 GPVEAAIRTKLEQALSPEVLELRNESGGHA-VPPGSE----THFRVAVVSSRFEG 79
>sp|Q84W65|SUFE_ARATH SufE-like protein, chloroplastic OS=Arabidopsis thaliana GN=EMB1374
PE=1 SV=2
Length = 371
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 2 SASSQVTKNKITLKIENILTKKLNPSHIDVINESFSHTG---ISPSEEPELASHFKIVVV 58
S S+ V ++I L K+L+P ++V + S+ H G + S + +HF + +V
Sbjct: 271 SGSNVVALGSRGMRIREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLRIV 330
Query: 59 SSQFENKPFIAK 70
S F+ K + +
Sbjct: 331 SDAFQGKSLVKR 342
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Query: 70 KLNPSHIDVINESFSHTG---ISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSR 126
+L+P ++V + S+ H G + S + +HF + +VS F+ K + +
Sbjct: 292 ELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLRIVSDAFQGKSLV----------K 341
Query: 127 CHRLVQGALQDAGIYDIVHAIQIV 150
HRL+ LQD + +HA+ IV
Sbjct: 342 RHRLIYDLLQDE-LKSGLHALSIV 364
>sp|Q9D8S9|BOLA1_MOUSE BolA-like protein 1 OS=Mus musculus GN=Bola1 PE=1 SV=1
Length = 137
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 2 SASSQVTKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQ 61
++ + I L + L+P +++ NES H + SE +HF++ VVSS+
Sbjct: 22 GSAGSAAAGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAGSE-----THFRVAVVSSR 76
Query: 62 FEN 64
FE
Sbjct: 77 FEG 79
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 16/79 (20%)
Query: 71 LNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRL 130
L+P +++ NES H + SE +HF++ VVSS+FE + HRL
Sbjct: 44 LSPEVLELRNESGGHAVPAGSE-----THFRVAVVSSRFEGMSPLQR----------HRL 88
Query: 131 VQGALQDAGIYDIVHAIQI 149
V AL + + VHA+ I
Sbjct: 89 VHEALSEE-LAGPVHALAI 106
>sp|Q89AA2|Y418_BUCBP Uncharacterized protein bbp_418 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=bbp_418 PE=3 SV=1
Length = 105
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 12 ITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFEN 64
I KI N+L KK+N + + NES H I+ ++ SHFKI++VS+ F N
Sbjct: 2 IKQKIINLLQKKINYEKLKIYNESKKH-NITHNKN----SHFKILIVSNYFIN 49
>sp|A1TNB1|SYE_ACIAC Glutamate--tRNA ligase OS=Acidovorax citrulli (strain AAC00-1)
GN=gltX PE=3 SV=1
Length = 478
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 3 ASSQVTKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEP----ELASHFKIVVV 58
A ++ T L+IE+ ++ + + +DVI E G+ P E P + +K V+
Sbjct: 42 AFARATGGDFILRIEDTDVERSSQAAVDVILEGMQWLGMEPDEGPFYQMQRMDRYKEVLA 101
Query: 59 SSQFENKPFIAKLNPSHIDVINE 81
Q + + ++ + +D + E
Sbjct: 102 QMQAQGLVYPCYMSVAELDALRE 124
>sp|Q9KPS0|BOLA_VIBCH Protein BolA OS=Vibrio cholerae serotype O1 (strain ATCC 39315 /
El Tor Inaba N16961) GN=bolA PE=3 SV=1
Length = 106
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 16 IENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQF 62
IE L+ + P + VINES H SE SHFK+ VVS +F
Sbjct: 6 IEKKLSDEFQPEFLKVINESDMHNVPRGSE-----SHFKVTVVSERF 47
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 65 KPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVT 124
K + P + VINES H SE SHFK+ VVS +F L
Sbjct: 8 KKLSDEFQPEFLKVINESDMHNVPRGSE-----SHFKVTVVSERFAG---------LRPV 53
Query: 125 SRCHRLVQGALQDAGIYDIVHAIQI 149
+R HRLV L D + + +HA+ I
Sbjct: 54 AR-HRLVNQTLADE-LANHIHALAI 76
>sp|P91375|YN1I_CAEEL Putative bolA-like protein K11H12.1 OS=Caenorhabditis elegans
GN=K11H12.1 PE=3 SV=1
Length = 108
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 16/83 (19%)
Query: 67 FIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSR 126
A P H++V ES H +E+ HF++ VVS +FE K I
Sbjct: 17 LFAAFQPKHLEVECESHLHNVPKGAEK-----HFRVQVVSDEFEGKRVIER--------- 62
Query: 127 CHRLVQGALQDAGIYDIVHAIQI 149
HRLV L + VHA++I
Sbjct: 63 -HRLVNTCLAKE-LATTVHALRI 83
>sp|Q07566|IPGD_SHIFL Inositol phosphate phosphatase IpgD OS=Shigella flexneri GN=ipgD
PE=1 SV=1
Length = 538
Score = 30.0 bits (66), Expect = 6.9, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 9 KNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKI 55
K ++ KI+ I T LN + +N++ SH G + S + ASH KI
Sbjct: 131 KKELQTKIKQIFTDYLNNKNWGPVNKNISHHGKNYSFQLTPASHMKI 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,772,210
Number of Sequences: 539616
Number of extensions: 2254579
Number of successful extensions: 5519
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5481
Number of HSP's gapped (non-prelim): 47
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)