Query psy4159
Match_columns 170
No_of_seqs 235 out of 1849
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 18:23:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11628 transcriptional regul 100.0 5.9E-30 1.3E-34 192.4 10.2 95 10-167 1-96 (105)
2 COG0271 BolA Stress-induced mo 100.0 7.7E-29 1.7E-33 181.8 8.5 84 14-159 6-89 (90)
3 KOG2313|consensus 100.0 3.5E-28 7.7E-33 179.7 9.5 94 7-157 6-100 (100)
4 PF01722 BolA: BolA-like prote 100.0 2E-28 4.4E-33 174.3 7.8 50 97-157 27-76 (76)
5 KOG3348|consensus 99.9 7.2E-24 1.6E-28 153.0 6.8 80 10-159 2-81 (85)
6 COG5007 Predicted transcriptio 99.9 5.3E-22 1.1E-26 141.7 6.1 79 58-161 1-79 (80)
7 COG5007 Predicted transcriptio 97.8 8.6E-06 1.9E-10 58.6 1.9 56 13-83 3-58 (80)
8 COG0271 BolA Stress-induced mo 97.3 3.6E-05 7.8E-10 56.7 -0.9 65 11-83 7-71 (90)
9 KOG2313|consensus 97.0 8.8E-05 1.9E-09 55.5 -1.6 44 37-82 39-82 (100)
10 PF01722 BolA: BolA-like prote 96.1 0.00072 1.6E-08 48.1 -1.7 59 19-82 1-59 (76)
11 PRK11628 transcriptional regul 95.9 0.0012 2.6E-08 49.8 -1.2 65 10-83 5-69 (105)
12 KOG3348|consensus 93.4 0.0093 2E-07 43.6 -2.0 31 51-81 32-62 (85)
13 smart00542 FYRC "FY-rich" doma 36.4 46 0.001 23.7 3.1 33 99-141 1-36 (86)
14 PF10330 Stb3: Putative Sin3 b 26.7 72 0.0016 23.7 2.8 21 106-136 34-54 (92)
15 PF06006 DUF905: Bacterial pro 22.7 74 0.0016 22.5 2.1 10 96-105 29-38 (70)
No 1
>PRK11628 transcriptional regulator BolA; Provisional
Probab=99.96 E-value=5.9e-30 Score=192.37 Aligned_cols=95 Identities=26% Similarity=0.365 Sum_probs=83.3
Q ss_pred chHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCCCCC
Q psy4159 10 NKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGIS 89 (170)
Q Consensus 10 ~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~HagHa 89 (170)
|.+.++|+++|+++|+|.+|+|+|+|++|+||.|
T Consensus 1 mm~~~~I~~~L~~~l~~~~l~V~d~S~~H~~~~g---------------------------------------------- 34 (105)
T PRK11628 1 MMIREQIEEKLRAAFQPVFLEVVDESYRHNVPAG---------------------------------------------- 34 (105)
T ss_pred CCcHHHHHHHHHhhCCCcEEEEEECcccccCCCC----------------------------------------------
Confidence 4567899999999999999999999999987643
Q ss_pred CCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHHHHh-ccCCCCC
Q psy4159 90 PSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLR-LCLTLDP 167 (170)
Q Consensus 90 ~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~~~~-~~~~~~~ 167 (170)
+++||+|+|||+.|+||++| +|||+||++|+++|.++ ||||+|+++||+||..+ ...+.+|
T Consensus 35 ------~~~Hf~v~IVS~~F~G~s~v----------~RHRlVy~~L~~~i~~~-IHALsi~t~tp~Ew~~~~~~~~~sp 96 (105)
T PRK11628 35 ------SESHFKVVLVSDRFTGERFL----------NRHRMIYSTLAEELSTT-VHALALHTYTIKEWEGLQDTVFASP 96 (105)
T ss_pred ------CCceEEEEEEChHhCCCCHH----------HHHHHHHHHHHHHHhCC-ccceeeecCCHHHHHHhhCCCCCCC
Confidence 27899999999999999999 99999999999999965 99999999999999864 3344444
No 2
>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]
Probab=99.96 E-value=7.7e-29 Score=181.81 Aligned_cols=84 Identities=33% Similarity=0.455 Sum_probs=77.9
Q ss_pred HHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCCCCCCCCC
Q psy4159 14 LKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEE 93 (170)
Q Consensus 14 ~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~HagHa~~~~ 93 (170)
++|+++|+++|+|.+++|+|+|++|.||+|
T Consensus 6 ~~Ie~~l~~~f~p~~l~i~deS~~h~~~~~-------------------------------------------------- 35 (90)
T COG0271 6 ERIEKKLRAAFPPSFLEIIDESHRHHGHAG-------------------------------------------------- 35 (90)
T ss_pred HHHHHHHHhcCCCceEEEEecccccccCCC--------------------------------------------------
Confidence 589999999999999999999999988753
Q ss_pred CCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHHHH
Q psy4159 94 PELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILL 159 (170)
Q Consensus 94 ~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~~~ 159 (170)
+|++||+|+|||++|+|||+| +|||+||++|+|+|..+ ||||+|+++||.||..
T Consensus 36 -g~~~Hf~i~IVS~~F~G~s~v----------~rHr~V~~~L~del~~~-iHALal~t~t~~e~~~ 89 (90)
T COG0271 36 -GGGSHFKVVIVSEAFQGKSLV----------ARHRLVYSALKDELSGG-IHALALHTYTPEEWKG 89 (90)
T ss_pred -CCCCeEEEEEEchhhCCccHH----------HHHHHHHHHHHHHHhcc-ceeeEeEeeccchhcc
Confidence 248999999999999999999 99999999999999998 9999999999998864
No 3
>KOG2313|consensus
Probab=99.95 E-value=3.5e-28 Score=179.72 Aligned_cols=94 Identities=29% Similarity=0.404 Sum_probs=85.2
Q ss_pred CCCchHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCC
Q psy4159 7 VTKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHT 86 (170)
Q Consensus 7 ~~~~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~Ha 86 (170)
..-|++..+|+++|..+|+|..|+++|+|++|+||++.++ +
T Consensus 6 ~~~g~~~~ri~~~l~~~lkp~~le~~n~S~~hagH~~~kg---------------------------------~------ 46 (100)
T KOG2313|consen 6 GIYGPRESRIREKLFEALKPLNLELYNESHQHAGHAVPKG---------------------------------M------ 46 (100)
T ss_pred cccCcHHHHHHHHhHhhcCcceEEEeeccccccccccccC---------------------------------C------
Confidence 4458999999999999999999999999999999986431 0
Q ss_pred CCCCCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCC-CCccEEEeeecCcHHH
Q psy4159 87 GISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIY-DIVHAIQIVMSVSLPI 157 (170)
Q Consensus 87 gHa~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~-~~iHAl~i~~~~~~e~ 157 (170)
.+.++||+|.|||++|+|++++ +||||||++|+||+.+ | +|||+|.++||.||
T Consensus 47 -------~~~EtHFrv~vVS~~FeG~s~v----------~RHRlVy~~L~eEl~~~g-vHAL~i~aKTP~e~ 100 (100)
T KOG2313|consen 47 -------DGAETHFRVEVVSSAFEGLSLV----------KRHRLVYKALKEELAGTG-VHALSIMAKTPSEV 100 (100)
T ss_pred -------CCCccEEEEEEechhhCCccHH----------HHHHHHHHHHHHHhhccc-eeEEEeeccCCCCC
Confidence 1238999999999999999999 9999999999999998 7 99999999999998
No 4
>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs. In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.
Probab=99.95 E-value=2e-28 Score=174.28 Aligned_cols=50 Identities=42% Similarity=0.541 Sum_probs=47.3
Q ss_pred CCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHH
Q psy4159 97 ASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPI 157 (170)
Q Consensus 97 ~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~ 157 (170)
++||+|+|||+.|+|||+| +|||+||++|+|+|.++ ||||+|+|+||+||
T Consensus 27 ~sHf~i~IvS~~F~g~s~i----------~rhr~V~~~L~~~i~~~-iHAlsi~t~tp~Ew 76 (76)
T PF01722_consen 27 GSHFKIIIVSDEFEGKSRI----------KRHRLVYKALKDEIKDG-IHALSIKTYTPEEW 76 (76)
T ss_dssp SSEEEEEEECGGGTTS-HH----------HHHHHHHHHTHHHHGCT-CSEEEEEEE-HHHH
T ss_pred CceEEEEEEcHHhCCCCHH----------HHHHHHHHHHHHHhcCC-ceEEEEEcCCcccC
Confidence 8999999999999999999 99999999999999998 99999999999999
No 5
>KOG3348|consensus
Probab=99.90 E-value=7.2e-24 Score=152.96 Aligned_cols=80 Identities=30% Similarity=0.413 Sum_probs=73.3
Q ss_pred chHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCCCCC
Q psy4159 10 NKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGIS 89 (170)
Q Consensus 10 ~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~HagHa 89 (170)
++-+++|+++|+++|.|.+++|.|.|+
T Consensus 2 ~~~e~~l~~~L~~~l~p~~v~V~D~Sg----------------------------------------------------- 28 (85)
T KOG3348|consen 2 TVTEERLEELLTEALEPEHVEVQDVSG----------------------------------------------------- 28 (85)
T ss_pred cchHHHHHHHHHhhcCceEEEEEEcCC-----------------------------------------------------
Confidence 356888999999999999999999874
Q ss_pred CCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHHHH
Q psy4159 90 PSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILL 159 (170)
Q Consensus 90 ~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~~~ 159 (170)
|||+.|.|+|||+.|+||++| +|||+||.+|+++|+. |||++++++||++|.+
T Consensus 29 -----GCG~~F~v~IvS~~FeGKs~L----------~rHRlVN~~L~Eeik~--iHalt~kt~t~~~w~~ 81 (85)
T KOG3348|consen 29 -----GCGSMFDVVIVSAAFEGKSLL----------ARHRLVNSILAEEIKE--IHALTIKTYTPEEWSK 81 (85)
T ss_pred -----CccceEEEEEEccccCChHHH----------HHHHHHHHHHHHHHHH--HhhheeeecChhhhcc
Confidence 258999999999999999999 9999999999999998 9999999999999975
No 6
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=99.86 E-value=5.3e-22 Score=141.73 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=74.1
Q ss_pred eChhhhccccccccCCceeeeeeccccCCCCCCCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHh
Q psy4159 58 VSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQD 137 (170)
Q Consensus 58 VS~eFIgkkLiarhr~~~leV~DeS~~HagHa~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~ 137 (170)
|..+.|+..|.+.++..+++|+.+ |+||.+++||+.|+||++| +|||+||+.|.+
T Consensus 1 M~~e~Ik~ll~~~L~~e~v~V~Gd---------------g~Hf~vi~Vs~~F~g~srv----------krqq~vYApL~~ 55 (80)
T COG5007 1 MDNEEIKSLLENALPLEEVEVEGD---------------GSHFQVIAVSEEFAGKSRV----------KRQQLVYAPLMA 55 (80)
T ss_pred CCHHHHHHHHHhcCCccEEEEecC---------------CceEEEEEehHhhcCccHH----------HHHHHHHHHHHH
Confidence 467889999999999999999876 8999999999999999999 999999999999
Q ss_pred hcCCCCccEEEeeecCcHHHHHhc
Q psy4159 138 AGIYDIVHAIQIVMSVSLPILLRL 161 (170)
Q Consensus 138 ~~~~~~iHAl~i~~~~~~e~~~~~ 161 (170)
.|..+.|||++|+++||+||.++.
T Consensus 56 ~i~~~~IHAlsikt~Tp~eW~~~~ 79 (80)
T COG5007 56 YIADNEIHALSIKTYTPAEWARDR 79 (80)
T ss_pred HhhcCceEEEEeeecCHHHhhhcc
Confidence 999888999999999999999863
No 7
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=97.83 E-value=8.6e-06 Score=58.63 Aligned_cols=56 Identities=20% Similarity=0.338 Sum_probs=48.8
Q ss_pred HHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccc
Q psy4159 13 TLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESF 83 (170)
Q Consensus 13 ~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~ 83 (170)
.+.|++.|+++|+-.+++|..| ++||.+++||++|.+++.++|++.+|--+-+-..
T Consensus 3 ~e~Ik~ll~~~L~~e~v~V~Gd---------------g~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~ 58 (80)
T COG5007 3 NEEIKSLLENALPLEEVEVEGD---------------GSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIA 58 (80)
T ss_pred HHHHHHHHHhcCCccEEEEecC---------------CceEEEEEehHhhcCccHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999754 3899999999999999999999998866655543
No 8
>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]
Probab=97.31 E-value=3.6e-05 Score=56.73 Aligned_cols=65 Identities=26% Similarity=0.366 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccc
Q psy4159 11 KITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESF 83 (170)
Q Consensus 11 ~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~ 83 (170)
-+++++++.+...+ -...+--.--..|+|++| +||+|+|||+.|.|+++++|||.++-.+.|+-.
T Consensus 7 ~Ie~~l~~~f~p~~-l~i~deS~~h~~~~~g~~-------~Hf~i~IVS~~F~G~s~v~rHr~V~~~L~del~ 71 (90)
T COG0271 7 RIEKKLRAAFPPSF-LEIIDESHRHHGHAGGGG-------SHFKVVIVSEAFQGKSLVARHRLVYSALKDELS 71 (90)
T ss_pred HHHHHHHhcCCCce-EEEEecccccccCCCCCC-------CeEEEEEEchhhCCccHHHHHHHHHHHHHHHHh
Confidence 36677777776555 333333343445666677 899999999999999999999999988888743
No 9
>KOG2313|consensus
Probab=96.98 E-value=8.8e-05 Score=55.46 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=36.6
Q ss_pred CCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeecc
Q psy4159 37 SHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINES 82 (170)
Q Consensus 37 ~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS 82 (170)
.|++..|+.+ .|+||+|.|||++|.++++++|||.+|-.+.||-
T Consensus 39 gH~~~kg~~~--~EtHFrv~vVS~~FeG~s~v~RHRlVy~~L~eEl 82 (100)
T KOG2313|consen 39 GHAVPKGMDG--AETHFRVEVVSSAFEGLSLVKRHRLVYKALKEEL 82 (100)
T ss_pred ccccccCCCC--CccEEEEEEechhhCCccHHHHHHHHHHHHHHHh
Confidence 4666665322 4799999999999999999999999998888874
No 10
>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs. In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.
Probab=96.07 E-value=0.00072 Score=48.05 Aligned_cols=59 Identities=36% Similarity=0.501 Sum_probs=51.3
Q ss_pred HHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeecc
Q psy4159 19 ILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINES 82 (170)
Q Consensus 19 kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS 82 (170)
||+++|+|.+|+|+|+|++|+||++ +++||+|.|||++|.|+++++|||.+|-.+.|+-
T Consensus 1 Kl~~~l~~~~l~V~d~S~~H~~h~~-----g~sHf~i~IvS~~F~g~s~i~rhr~V~~~L~~~i 59 (76)
T PF01722_consen 1 KLKAALPPTHLEVEDESHKHAGHAG-----GGSHFKIIIVSDEFEGKSRIKRHRLVYKALKDEI 59 (76)
T ss_dssp HHHHHHTTSEEEEEE-SSSSSS-CC-----SSSEEEEEEECGGGTTS-HHHHHHHHHHHTHHHH
T ss_pred ChhHhCCCcEEEEEECcccccCCCC-----CCceEEEEEEcHHhCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999983 4899999999999999999999999988887764
No 11
>PRK11628 transcriptional regulator BolA; Provisional
Probab=95.94 E-value=0.0012 Score=49.83 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=45.1
Q ss_pred chHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccc
Q psy4159 10 NKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESF 83 (170)
Q Consensus 10 ~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~ 83 (170)
-.+.++|+..|... .-...+.-..-..|.|-.+ ||+|+|||+.|.|+++++|||.+|-.+.++-.
T Consensus 5 ~~I~~~L~~~l~~~-~l~V~d~S~~H~~~~g~~~--------Hf~v~IVS~~F~G~s~v~RHRlVy~~L~~~i~ 69 (105)
T PRK11628 5 EQIEEKLRAAFQPV-FLEVVDESYRHNVPAGSES--------HFKVVLVSDRFTGERFLNRHRMIYSTLAEELS 69 (105)
T ss_pred HHHHHHHHhhCCCc-EEEEEECcccccCCCCCCc--------eEEEEEEChHhCCCCHHHHHHHHHHHHHHHHh
Confidence 35778888888532 2222222211133666666 89999999999999999999999877777643
No 12
>KOG3348|consensus
Probab=93.42 E-value=0.0093 Score=43.56 Aligned_cols=31 Identities=32% Similarity=0.487 Sum_probs=26.9
Q ss_pred ceEEEEEeChhhhccccccccCCceeeeeec
Q psy4159 51 SHFKIVVVSSQFENKPFIAKLNPSHIDVINE 81 (170)
Q Consensus 51 sHF~v~IVS~eFIgkkLiarhr~~~leV~De 81 (170)
+.|+|.|||+.|.|+++++|||.+.-.+.++
T Consensus 32 ~~F~v~IvS~~FeGKs~L~rHRlVN~~L~Ee 62 (85)
T KOG3348|consen 32 SMFDVVIVSAAFEGKSLLARHRLVNSILAEE 62 (85)
T ss_pred ceEEEEEEccccCChHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999876555554
No 13
>smart00542 FYRC "FY-rich" domain, C-terminal region. is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=36.42 E-value=46 Score=23.71 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=26.0
Q ss_pred eEEEEEEc---CCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCC
Q psy4159 99 HFKIVVVS---SQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIY 141 (170)
Q Consensus 99 hf~i~ivs---~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~ 141 (170)
+|+|++-+ ..|.|.|.= ++|++|++.++++...
T Consensus 1 lF~v~~~~~~~~~~~~~S~~----------~~W~~vl~~v~~~r~~ 36 (86)
T smart00542 1 LFRVEIESDPDEVFKGESPE----------KCWEMVLERVQEARIV 36 (86)
T ss_pred CeEEEEecCCCCeEEeCCHH----------HHHHHHHHHHHHHHHH
Confidence 36666666 357788888 9999999999998865
No 14
>PF10330 Stb3: Putative Sin3 binding protein; InterPro: IPR018818 This entry represents Sin3 binding proteins conserved in fungi. Sin3p does not bind DNA directly even though the yeast SIN3 gene functions as a transcriptional repressor. Sin3p is part of a large multiprotein complex []. Stb3 appears to bind directly to ribosomal RNA Processing Elements (RRPE) although there are no obvious domains which would accord with this, implying that Stb3 may be a novel RNA-binding protein [].
Probab=26.71 E-value=72 Score=23.73 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.1
Q ss_pred cCCCCCCCchhhhhhhhhchhHHHHHHHHHH
Q psy4159 106 SSQFENKPFIAFIIILEVTSRCHRLVQGALQ 136 (170)
Q Consensus 106 s~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~ 136 (170)
-|.|++.|.- ++-|+|.+||.
T Consensus 34 vPgF~~ls~s----------KqRRLi~~ALE 54 (92)
T PF10330_consen 34 VPGFSDLSPS----------KQRRLIMAALE 54 (92)
T ss_pred CCCcccCCHH----------HHHHHHHHHHh
Confidence 3679999999 99999999997
No 15
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=22.66 E-value=74 Score=22.55 Aligned_cols=10 Identities=40% Similarity=0.790 Sum_probs=6.8
Q ss_pred CCCeEEEEEE
Q psy4159 96 LASHFKIVVV 105 (170)
Q Consensus 96 ~~~hf~i~iv 105 (170)
.|+||+++|-
T Consensus 29 qg~HfRlvvR 38 (70)
T PF06006_consen 29 QGTHFRLVVR 38 (70)
T ss_dssp SSS--EEEEE
T ss_pred CCCeEEEEEE
Confidence 3899999998
Done!