Query psy4159
Match_columns 170
No_of_seqs 235 out of 1849
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 18:24:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dhm_A Protein BOLA; stationar 100.0 7E-32 2.4E-36 202.3 9.7 98 7-167 5-103 (107)
2 1v60_A BOLA1, riken cDNA 18100 100.0 2.5E-31 8.6E-36 203.7 11.0 97 8-167 23-119 (123)
3 3o2e_A BOLA-like protein; ssgc 99.9 9.3E-28 3.2E-32 179.4 7.2 84 9-162 21-104 (105)
4 1v9j_A BOLA-like protein riken 99.9 4.2E-27 1.4E-31 177.9 5.8 81 11-160 30-110 (113)
5 2kdn_A Putative uncharacterize 99.9 3E-26 1E-30 172.0 6.6 82 57-161 23-104 (108)
6 3tr3_A BOLA; cellular processe 99.9 7.2E-25 2.5E-29 157.2 6.0 78 57-159 4-81 (82)
7 1xs3_A Hypothetical protein XC 99.9 1.6E-24 5.4E-29 154.7 7.0 50 97-157 31-80 (80)
8 1ny8_A Protein YRBA; structure 99.9 9.3E-25 3.2E-29 161.1 3.6 80 57-161 5-84 (97)
9 2kz0_A BOLA family protein; BO 99.9 3.2E-24 1.1E-28 151.9 5.0 70 12-154 7-76 (76)
10 2kdn_A Putative uncharacterize 99.3 4.7E-13 1.6E-17 100.2 2.2 63 10-83 23-85 (108)
11 3tr3_A BOLA; cellular processe 99.0 4.1E-11 1.4E-15 85.6 1.5 59 10-82 4-62 (82)
12 1ny8_A Protein YRBA; structure 98.9 1.5E-10 5.1E-15 85.1 -0.8 56 12-82 7-62 (97)
13 1v9j_A BOLA-like protein riken 97.2 3.5E-05 1.2E-09 57.9 -0.9 62 7-83 30-92 (113)
14 2kz0_A BOLA family protein; BO 97.2 3.4E-05 1.2E-09 54.0 -1.3 61 7-85 6-67 (76)
15 3o2e_A BOLA-like protein; ssgc 96.9 9.7E-05 3.3E-09 54.8 -1.0 59 9-82 25-83 (105)
16 1xs3_A Hypothetical protein XC 96.6 0.00022 7.4E-09 50.3 -0.8 59 11-83 6-64 (80)
17 2dhm_A Protein BOLA; stationar 96.5 0.00022 7.7E-09 52.8 -1.4 65 9-82 11-75 (107)
18 1v60_A BOLA1, riken cDNA 18100 96.3 0.00038 1.3E-08 52.8 -1.5 66 8-82 27-92 (123)
19 1xhj_A Nitrogen fixation prote 35.5 16 0.00053 25.6 1.6 29 9-38 55-83 (88)
No 1
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}
Probab=99.97 E-value=7e-32 Score=202.34 Aligned_cols=98 Identities=26% Similarity=0.355 Sum_probs=86.9
Q ss_pred CCCchHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCC
Q psy4159 7 VTKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHT 86 (170)
Q Consensus 7 ~~~~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~Ha 86 (170)
+..|++.++|+++|+++|+|.+|+|+|+|++|+||.|
T Consensus 5 ~~~m~~~~~I~~~L~~~l~p~~l~V~d~S~~H~~~~G------------------------------------------- 41 (107)
T 2dhm_A 5 SSGMMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAG------------------------------------------- 41 (107)
T ss_dssp SCCCCHHHHHHHHHHHHTCCSCCEEEECCCCCSSCCC-------------------------------------------
T ss_pred cCCCCHHHHHHHHHHhcCCCcEEEEEECcccccCCCC-------------------------------------------
Confidence 3446789999999999999999999999999988753
Q ss_pred CCCCCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHHHHhcc-CCC
Q psy4159 87 GISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLRLC-LTL 165 (170)
Q Consensus 87 gHa~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~~~~~~-~~~ 165 (170)
+|+||+|+|||++|+||++| +|||+||++|+++|..+ ||||+|+|+||+||..+.. ...
T Consensus 42 ---------~gsHf~v~IVS~~F~G~s~v----------~RHrlVy~~L~~ei~~~-IHALsi~t~TP~Ew~~~~~~~~~ 101 (107)
T 2dhm_A 42 ---------SESHFKVVLVSDRFTGERFL----------NRHRMIYSTLAEELSTT-VHALALHTYTIKEWEGLQDTVFA 101 (107)
T ss_dssp ---------SCCCEEEEEECGGGSSCCSS----------HHHHHHHHHTHHHHHTT-CCCCEEEEECHHHHHTSSCCCCC
T ss_pred ---------CCceEEEEEEchhhCCCCHH----------HHHHHHHHHHHHHHcCC-cceEEEEecCHHHHHhccCCCCC
Confidence 38899999999999999999 99999999999999976 9999999999999988533 334
Q ss_pred CC
Q psy4159 166 DP 167 (170)
Q Consensus 166 ~~ 167 (170)
+|
T Consensus 102 sp 103 (107)
T 2dhm_A 102 SP 103 (107)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 2
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=99.97 E-value=2.5e-31 Score=203.67 Aligned_cols=97 Identities=29% Similarity=0.363 Sum_probs=87.2
Q ss_pred CCchHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCCC
Q psy4159 8 TKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTG 87 (170)
Q Consensus 8 ~~~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~Hag 87 (170)
..++++++|+++|+++|+|.+|+|+|+|++|+||.|
T Consensus 23 ~~~~~~~~I~~~L~~~l~p~~l~V~DeS~~H~~~~G-------------------------------------------- 58 (123)
T 1v60_A 23 AAGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAG-------------------------------------------- 58 (123)
T ss_dssp SSCHHHHHHHHHHHHHTCCSEEEEEECCCSSSCCTT--------------------------------------------
T ss_pred CCCcHHHHHHHHHHhhCCCeEEEEEECcccccCCCC--------------------------------------------
Confidence 357899999999999999999999999999998753
Q ss_pred CCCCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHHHHhccCCCCC
Q psy4159 88 ISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLRLCLTLDP 167 (170)
Q Consensus 88 Ha~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~~~~~~~~~~~ 167 (170)
+|+||+|+|||++|+||++| +|||+||++|+++|..+ ||||+|+++||+||..+.-...+|
T Consensus 59 --------~gsHf~v~IVS~~F~Gks~v----------~RHRlVy~aL~~ei~~~-IHALsi~t~TP~Ew~~~~~~~~Sp 119 (123)
T 1v60_A 59 --------SETHFRVAVVSSRFEGMSPL----------QRHRLVHEALSEELAGP-VHALAIQAKTPAQWRENPQLDISP 119 (123)
T ss_dssp --------CCSEEEEEEECGGGTTCCHH----------HHHHHHHHHTHHHHTTT-CSEEEEEEECTTTTTTCCCCCSSC
T ss_pred --------CCCeEEEEEEehhhCCCCHH----------HHHHHHHHHHHHHHcCC-cceeEeEecCHHHHHhccCCCCCC
Confidence 38899999999999999999 99999999999999976 999999999999998865444444
No 3
>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}
Probab=99.94 E-value=9.3e-28 Score=179.44 Aligned_cols=84 Identities=23% Similarity=0.236 Sum_probs=76.3
Q ss_pred CchHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCCCC
Q psy4159 9 KNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGI 88 (170)
Q Consensus 9 ~~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~HagH 88 (170)
.|+++++|+++|+++|+|.+|+|+|+|+
T Consensus 21 ~M~~~~~I~~kL~~~l~p~~l~V~D~S~---------------------------------------------------- 48 (105)
T 3o2e_A 21 SMVSKSIVEERLRSMLSPQFLKVTDNSG---------------------------------------------------- 48 (105)
T ss_dssp CCCCHHHHHHHHHHHHCCSEEEEEECCB----------------------------------------------------
T ss_pred cCcHHHHHHHHHHhhCCCCEEEEEECCC----------------------------------------------------
Confidence 4678999999999999999999999983
Q ss_pred CCCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHHHHhcc
Q psy4159 89 SPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLRLC 162 (170)
Q Consensus 89 a~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~~~~~~ 162 (170)
|||+||+|+|||+.|+||++| +|||+||++|+++|. + ||||+|+++||+||..+++
T Consensus 49 ------g~gsHf~v~IVS~~F~Gks~v----------~RHRlVy~aL~~ei~-~-IHALsi~t~TP~Ew~~~~~ 104 (105)
T 3o2e_A 49 ------GCGAAFNAYIVSQQFEGKGLL----------DRQRLVNSAIAAEMP-Q-IHAFTMKCLTPGEWEAKNR 104 (105)
T ss_dssp ------TTBEEEEEEEECGGGTTCCHH----------HHHHHHHHHTTTTGG-G-EEEEEEEEECHHHHHHTTC
T ss_pred ------CCCcEEEEEEEchHhCCCCHH----------HHHHHHHHHHHHHHh-c-CceeEEEeCCHHHHHHhhC
Confidence 138899999999999999999 999999999999998 4 9999999999999988753
No 4
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1
Probab=99.93 E-value=4.2e-27 Score=177.93 Aligned_cols=81 Identities=25% Similarity=0.389 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCCCCCC
Q psy4159 11 KITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISP 90 (170)
Q Consensus 11 ~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~HagHa~ 90 (170)
...++|+++|+++|+|.+|+|+|+|+ +
T Consensus 30 m~~~~I~~~L~~~l~p~~l~V~DeS~---~-------------------------------------------------- 56 (113)
T 1v9j_A 30 LSADYLREKLRQDLEAEHVEVEDTTL---N-------------------------------------------------- 56 (113)
T ss_dssp SCHHHHHHHHHHHHTCSEEEEEECCS---S--------------------------------------------------
T ss_pred CcHHHHHHHHHhhCCCcEEEEEeccC---C--------------------------------------------------
Confidence 36799999999999999999999983 1
Q ss_pred CCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHHHHh
Q psy4159 91 SEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLR 160 (170)
Q Consensus 91 ~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~~~~ 160 (170)
|||+||+|+|||++|+||++| +|||+||++|+++|.. ||||+|+|+||+||..+
T Consensus 57 ----G~gsHF~v~IVS~~F~Gks~V----------~RHRlVy~aL~eei~~--IHALsi~t~TP~Ew~~~ 110 (113)
T 1v9j_A 57 ----RCATSFRVLVVSAKFEGKPLL----------QRHRLVNECLAEELPH--IHAFEQKTLTPEQWTRQ 110 (113)
T ss_dssp ----SSCCCEEEEEECSHHHHSCHH----------HHHHHHHHHTTTTGGG--CSSEEEEEECHHHHHHS
T ss_pred ----CCCceEEEEEEchhhCCCCHH----------HHHHHHHHHHHHHHhc--CceEEEEecChHHHHHh
Confidence 138899999999999999999 9999999999999995 99999999999999875
No 5
>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}
Probab=99.93 E-value=3e-26 Score=172.02 Aligned_cols=82 Identities=22% Similarity=0.366 Sum_probs=76.5
Q ss_pred EeChhhhccccccccCCceeeeeeccccCCCCCCCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHH
Q psy4159 57 VVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQ 136 (170)
Q Consensus 57 IVS~eFIgkkLiarhr~~~leV~DeS~~HagHa~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~ 136 (170)
+|..+.|+.+|.+.|+|.+++|.|+|+ |||+||+|+|||++|+||++| +|||+||++|+
T Consensus 23 Mm~~~~I~~~L~~~l~p~~l~V~DeS~-----------G~gsHF~v~IVS~~F~Gks~v----------~RHRlVy~aL~ 81 (108)
T 2kdn_A 23 MCIQKVIEDKLSSALKPTFLELVDKSC-----------GCGTSFDAVIVSNNFEDKKLL----------DRHRLVNTILK 81 (108)
T ss_dssp CSHHHHHHHHHHHHHCCSEEEEEECCC-----------SSSCCEEEEEECGGGTTCCHH----------HHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhhCCCcEEEEEeCCC-----------CCCceEEEEEEehhhCCCCHH----------HHHHHHHHHHH
Confidence 378999999999999999999999994 248999999999999999999 99999999999
Q ss_pred hhcCCCCccEEEeeecCcHHHHHhc
Q psy4159 137 DAGIYDIVHAIQIVMSVSLPILLRL 161 (170)
Q Consensus 137 ~~~~~~~iHAl~i~~~~~~e~~~~~ 161 (170)
++|.. ||||+|+|+||+||..+.
T Consensus 82 ~e~~~--IHALsi~t~TP~Ew~~~~ 104 (108)
T 2kdn_A 82 EELQN--IHAFSMKCHTPLEYDKLK 104 (108)
T ss_dssp HHGGG--CSCEEEEEECHHHHHHHH
T ss_pred HHHhc--CceEEEEecChHHHHHhh
Confidence 99985 999999999999998753
No 6
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}
Probab=99.91 E-value=7.2e-25 Score=157.23 Aligned_cols=78 Identities=23% Similarity=0.232 Sum_probs=72.1
Q ss_pred EeChhhhccccccccCCceeeeeeccccCCCCCCCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHH
Q psy4159 57 VVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQ 136 (170)
Q Consensus 57 IVS~eFIgkkLiarhr~~~leV~DeS~~HagHa~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~ 136 (170)
+|..+.|+.+|.+.|+|.+++|.+. +|+||+|+|||+.|+||++| +|||+||++|+
T Consensus 4 Mm~~~~I~~~L~~~l~~~~l~V~~g--------------~gshf~v~IVS~~F~G~~~v----------~Rhr~V~~~L~ 59 (82)
T 3tr3_A 4 MVTTHDIKQWIETGLSESRVISAEG--------------DGHHFEAVVLCPTFEGQTAL----------TRHRLVYNALG 59 (82)
T ss_dssp CCCHHHHHHHHHHHSTTCEEEEEEE--------------CSSEEEEEEECGGGTTCCHH----------HHHHHHHHHTG
T ss_pred cchHHHHHHHHHhhCCCcEEEEEcC--------------CCCeEEEEEEchhhCCCCHH----------HHHHHHHHHHH
Confidence 4789999999999999999999831 48999999999999999999 99999999999
Q ss_pred hhcCCCCccEEEeeecCcHHHHH
Q psy4159 137 DAGIYDIVHAIQIVMSVSLPILL 159 (170)
Q Consensus 137 ~~~~~~~iHAl~i~~~~~~e~~~ 159 (170)
+++.++ ||||+|+++||+||..
T Consensus 60 ~~~~~~-iHAL~i~t~Tp~Ew~~ 81 (82)
T 3tr3_A 60 SHMQSD-IHALSLKTYTPDEYER 81 (82)
T ss_dssp GGGTTT-CSEEEEEEECHHHHHC
T ss_pred HHHcCC-cceEEEEeCCHHHHhc
Confidence 999755 9999999999999974
No 7
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}
Probab=99.90 E-value=1.6e-24 Score=154.73 Aligned_cols=50 Identities=28% Similarity=0.310 Sum_probs=48.2
Q ss_pred CCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHH
Q psy4159 97 ASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPI 157 (170)
Q Consensus 97 ~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~ 157 (170)
|+||+|+|||++|+||++| +|||+||++|+++|.++ ||||+|+++||+||
T Consensus 31 gsHf~v~IVS~~F~G~~~v----------~RHrlVy~~L~~e~~~~-iHALsi~t~Tp~E~ 80 (80)
T 1xs3_A 31 GVHFEATVVSPAFVGKAPL----------ARHRMVYATLGELMGGA-IHALQLKTLTPDEA 80 (80)
T ss_dssp TSCCEEEEECGGGCSSCCH----------HHHHHHHHHTTSTTTTC-CSCCEEEEECGGGC
T ss_pred CCEEEEEEEchhhCCCcHH----------HHHHHHHHHHHHHHcCC-cceEEEEecCCCCC
Confidence 7899999999999999999 99999999999999965 99999999999997
No 8
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1
Probab=99.90 E-value=9.3e-25 Score=161.13 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=73.4
Q ss_pred EeChhhhccccccccCCceeeeeeccccCCCCCCCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHH
Q psy4159 57 VVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQ 136 (170)
Q Consensus 57 IVS~eFIgkkLiarhr~~~leV~DeS~~HagHa~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~ 136 (170)
+|+.+.|+.+|.++++|.+++|.+ ||+||+|+|||++|+||++| +|||+||++|+
T Consensus 5 ~m~~~~I~~~L~~~l~p~~l~V~G---------------~gsHf~v~IVS~~F~Gks~v----------~RHRlVy~aL~ 59 (97)
T 1ny8_A 5 PMENNEIQSVLMNALSLQEVHVSG---------------DGSHFQVIAVGELFDGMSRV----------KKQQTVYGPLM 59 (97)
T ss_dssp CCCCHHHHHHHHHHHCCSEEEEEE---------------SSSEEEEEEESSTTSSSCHH----------HHHHHHHTTTH
T ss_pred ccCHHHHHHHHHhhCCCcEEEEEc---------------CCceEEEEEEChhhCCCCHH----------HHHHHHHHHHH
Confidence 467899999999999999999981 38999999999999999999 99999999999
Q ss_pred hhcCCCCccEEEeeecCcHHHHHhc
Q psy4159 137 DAGIYDIVHAIQIVMSVSLPILLRL 161 (170)
Q Consensus 137 ~~~~~~~iHAl~i~~~~~~e~~~~~ 161 (170)
++|.+|.||||+|+|+||+||..+.
T Consensus 60 ~e~~~~~IHALsi~t~TP~Ew~~~~ 84 (97)
T 1ny8_A 60 EYIADNRIHAVSIKAYTPAEWARDR 84 (97)
T ss_dssp HHHHHHTTSEEEEEECCHHHHHHHH
T ss_pred HHHccCCcceEEeEecChHHHHhhh
Confidence 9998544999999999999998864
No 9
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}
Probab=99.89 E-value=3.2e-24 Score=151.91 Aligned_cols=70 Identities=29% Similarity=0.453 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCCCCCCC
Q psy4159 12 ITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPS 91 (170)
Q Consensus 12 ~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~HagHa~~ 91 (170)
..++|+++|+++|+|.+|+|+|+| |
T Consensus 7 ~~~~I~~~L~~~l~~~~l~V~d~S----G--------------------------------------------------- 31 (76)
T 2kz0_A 7 TQSQLELLIRNAFPEAEITVTSLV----G--------------------------------------------------- 31 (76)
T ss_dssp TTHHHHHHHHHHCTTEEEEEECCS----S---------------------------------------------------
T ss_pred cHHHHHHHHHhhCCCcEEEEEECC----C---------------------------------------------------
Confidence 357888888888888888888887 1
Q ss_pred CCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCc
Q psy4159 92 EEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVS 154 (170)
Q Consensus 92 ~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~ 154 (170)
||+||+|+|||++|+||++| +|||+||++|+++ + ||||+|+|+||
T Consensus 32 ----~g~Hf~v~IVS~~F~G~s~v----------~rHr~Vy~~L~~e---~-iHALsi~t~tp 76 (76)
T 2kz0_A 32 ----DNNHYSIKVISSQFQGKSKL----------EQHRMIYKVLDGL---N-IHAIQIQTGCK 76 (76)
T ss_dssp ----TTSCCEEEEEEGGGTTCCHH----------HHHHHHHHHTTTS---C-CCSSSEEECCC
T ss_pred ----CccEEEEEEEchHhCCCCHH----------HHHHHHHHHhccC---C-ceEEEEEEeCC
Confidence 27899999999999999999 9999999999999 4 99999999997
No 10
>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}
Probab=99.31 E-value=4.7e-13 Score=100.23 Aligned_cols=63 Identities=24% Similarity=0.377 Sum_probs=57.0
Q ss_pred chHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccc
Q psy4159 10 NKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESF 83 (170)
Q Consensus 10 ~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~ 83 (170)
|...++|+++|+++|+|.+|+|+|+|+ |+++||+|+|||+.|.|+++++|||.+|-.+.++-.
T Consensus 23 Mm~~~~I~~~L~~~l~p~~l~V~DeS~-----------G~gsHF~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~ 85 (108)
T 2kdn_A 23 MCIQKVIEDKLSSALKPTFLELVDKSC-----------GCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQ 85 (108)
T ss_dssp CSHHHHHHHHHHHHHCCSEEEEEECCC-----------SSSCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGG
T ss_pred CCcHHHHHHHHHhhCCCcEEEEEeCCC-----------CCCceEEEEEEehhhCCCCHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999993 357999999999999999999999999988887743
No 11
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}
Probab=99.04 E-value=4.1e-11 Score=85.59 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=52.6
Q ss_pred chHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeecc
Q psy4159 10 NKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINES 82 (170)
Q Consensus 10 ~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS 82 (170)
|...++|+++|+++|+|.+|+|.+ |+++||+|+|||+.|.|+++++|||.+|-.+.++-
T Consensus 4 Mm~~~~I~~~L~~~l~~~~l~V~~--------------g~gshf~v~IVS~~F~G~~~v~Rhr~V~~~L~~~~ 62 (82)
T 3tr3_A 4 MVTTHDIKQWIETGLSESRVISAE--------------GDGHHFEAVVLCPTFEGQTALTRHRLVYNALGSHM 62 (82)
T ss_dssp CCCHHHHHHHHHHHSTTCEEEEEE--------------ECSSEEEEEEECGGGTTCCHHHHHHHHHHHTGGGG
T ss_pred cchHHHHHHHHHhhCCCcEEEEEc--------------CCCCeEEEEEEchhhCCCCHHHHHHHHHHHHHHHH
Confidence 345899999999999999999993 25699999999999999999999999988888775
No 12
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1
Probab=98.88 E-value=1.5e-10 Score=85.12 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeecc
Q psy4159 12 ITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINES 82 (170)
Q Consensus 12 ~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS 82 (170)
..++|+++|+++|+|.+|+|. | +|+||+|+|||+.|.|+++++|||.+|-.+.++-
T Consensus 7 ~~~~I~~~L~~~l~p~~l~V~-------G--------~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~e~ 62 (97)
T 1ny8_A 7 ENNEIQSVLMNALSLQEVHVS-------G--------DGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYI 62 (97)
T ss_dssp CCHHHHHHHHHHHCCSEEEEE-------E--------SSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHH
T ss_pred CHHHHHHHHHhhCCCcEEEEE-------c--------CCceEEEEEEChhhCCCCHHHHHHHHHHHHHHHH
Confidence 358999999999999999998 1 4699999999999999999999999988887774
No 13
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1
Probab=97.21 E-value=3.5e-05 Score=57.87 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=47.7
Q ss_pred CCCchHHHHHHHHHhhcCCCceEEEE-ecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccc
Q psy4159 7 VTKNKITLKIENILTKKLNPSHIDVI-NESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESF 83 (170)
Q Consensus 7 ~~~~~~~~~I~~kL~~~l~p~~leV~-deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~ 83 (170)
|..-.+.++|++.|... .-...+.- +... +||+|+|||+.|.|+++++|||.+|-.+.++-.
T Consensus 30 m~~~~I~~~L~~~l~p~-~l~V~DeS~~G~g--------------sHF~v~IVS~~F~Gks~V~RHRlVy~aL~eei~ 92 (113)
T 1v9j_A 30 LSADYLREKLRQDLEAE-HVEVEDTTLNRCA--------------TSFRVLVVSAKFEGKPLLQRHRLVNECLAEELP 92 (113)
T ss_dssp SCHHHHHHHHHHHHTCS-EEEEEECCSSSSC--------------CCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGG
T ss_pred CcHHHHHHHHHhhCCCc-EEEEEeccCCCCC--------------ceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHh
Confidence 45678999999999743 33344443 2222 799999999999999999999999988887743
No 14
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}
Probab=97.16 E-value=3.4e-05 Score=54.00 Aligned_cols=61 Identities=23% Similarity=0.282 Sum_probs=44.5
Q ss_pred CCCchHHHHHHHHHhhc-CCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccC
Q psy4159 7 VTKNKITLKIENILTKK-LNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSH 85 (170)
Q Consensus 7 ~~~~~~~~~I~~kL~~~-l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~H 85 (170)
|..-.+.++|++.|... +...... =++| ||+|+|||+.|.|+++++|||.+|-.+.|+ .-|
T Consensus 6 m~~~~I~~~L~~~l~~~~l~V~d~S-G~g~----------------Hf~v~IVS~~F~G~s~v~rHr~Vy~~L~~e-~iH 67 (76)
T 2kz0_A 6 VTQSQLELLIRNAFPEAEITVTSLV-GDNN----------------HYSIKVISSQFQGKSKLEQHRMIYKVLDGL-NIH 67 (76)
T ss_dssp CTTHHHHHHHHHHCTTEEEEEECCS-STTS----------------CCEEEEEEGGGTTCCHHHHHHHHHHHTTTS-CCC
T ss_pred ccHHHHHHHHHhhCCCcEEEEEECC-CCcc----------------EEEEEEEchHhCCCCHHHHHHHHHHHhccC-Cce
Confidence 44456788888888632 2221111 2454 799999999999999999999999888888 444
No 15
>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}
Probab=96.90 E-value=9.7e-05 Score=54.77 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=45.2
Q ss_pred CchHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeecc
Q psy4159 9 KNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINES 82 (170)
Q Consensus 9 ~~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS 82 (170)
.-.+.++|++.|... .-...+.-.... +||+|+|||+.|.|+++++|||.+|-.+.++-
T Consensus 25 ~~~I~~kL~~~l~p~-~l~V~D~S~g~g--------------sHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei 83 (105)
T 3o2e_A 25 KSIVEERLRSMLSPQ-FLKVTDNSGGCG--------------AAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEM 83 (105)
T ss_dssp HHHHHHHHHHHHCCS-EEEEEECCBTTB--------------EEEEEEEECGGGTTCCHHHHHHHHHHHTTTTG
T ss_pred HHHHHHHHHhhCCCC-EEEEEECCCCCC--------------cEEEEEEEchHhCCCCHHHHHHHHHHHHHHHH
Confidence 456888999988533 333444443344 79999999999999999999999888777764
No 16
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}
Probab=96.63 E-value=0.00022 Score=50.27 Aligned_cols=59 Identities=24% Similarity=0.214 Sum_probs=52.8
Q ss_pred hHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccc
Q psy4159 11 KITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESF 83 (170)
Q Consensus 11 ~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~ 83 (170)
-..++|+++|+++|+|.+|+|. | ++|+||+|+|||+.|.|+++++|||.+|-.+.|+-.
T Consensus 6 m~~~~I~~~L~~~l~~~~l~V~-------G-------~~gsHf~v~IVS~~F~G~~~v~RHrlVy~~L~~e~~ 64 (80)
T 1xs3_A 6 LDAETIRKLIESGLPEARVDVQ-------G-------EDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMG 64 (80)
T ss_dssp CHHHHHHHHHHHHSSSCEEEEE-------S-------CTTSCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTT
T ss_pred CCHHHHHHHHHhhCCCcEEEEE-------c-------CCCCEEEEEEEchhhCCCcHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999998 2 256999999999999999999999999988888753
No 17
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}
Probab=96.52 E-value=0.00022 Score=52.84 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeecc
Q psy4159 9 KNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINES 82 (170)
Q Consensus 9 ~~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS 82 (170)
.-.+.++|++.|... .-...+.-.--..|.|-.. ||+|+|||+.|.|+++++|||.+|-.+.|+-
T Consensus 11 ~~~I~~~L~~~l~p~-~l~V~d~S~~H~~~~G~gs--------Hf~v~IVS~~F~G~s~v~RHrlVy~~L~~ei 75 (107)
T 2dhm_A 11 RERIEEKLRAAFQPV-FLEVVDESYRHNVPAGSES--------HFKVVLVSDRFTGERFLNRHRMIYSTLAEEL 75 (107)
T ss_dssp HHHHHHHHHHHTCCS-CCEEEECCCCCSSCCCSCC--------CEEEEEECGGGSSCCSSHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhcCCCc-EEEEEECcccccCCCCCCc--------eEEEEEEchhhCCCCHHHHHHHHHHHHHHHH
Confidence 467899999999643 3444443322233555545 8999999999999999999999998888774
No 18
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=96.26 E-value=0.00038 Score=52.83 Aligned_cols=66 Identities=23% Similarity=0.269 Sum_probs=47.7
Q ss_pred CCchHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeecc
Q psy4159 8 TKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINES 82 (170)
Q Consensus 8 ~~~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS 82 (170)
..-.+.++|++.|... .-...+.-.--..|.|-.. ||+|+|||+.|.++++++|||.+|-.+.++-
T Consensus 27 ~~~~I~~~L~~~l~p~-~l~V~DeS~~H~~~~G~gs--------Hf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei 92 (123)
T 1v60_A 27 VEAAIRAKLEQALSPE-VLELRNESGGHAVPAGSET--------HFRVAVVSSRFEGMSPLQRHRLVHEALSEEL 92 (123)
T ss_dssp HHHHHHHHHHHHTCCS-EEEEEECCCSSSCCTTCCS--------EEEEEEECGGGTTCCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhhCCCe-EEEEEECcccccCCCCCCC--------eEEEEEEehhhCCCCHHHHHHHHHHHHHHHH
Confidence 3456888999888643 3333333322223455445 8999999999999999999999998888775
No 19
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=35.53 E-value=16 Score=25.65 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=18.9
Q ss_pred CchHHHHHHHHHhhcCCCceEEEEecCCCC
Q psy4159 9 KNKITLKIENILTKKLNPSHIDVINESFSH 38 (170)
Q Consensus 9 ~~~~~~~I~~kL~~~l~p~~leV~deS~~H 38 (170)
.+.+..-|+++|++.+ |..-.|.+....|
T Consensus 55 ~~TLk~gIE~~L~~~v-Pev~~V~~v~~~~ 83 (88)
T 1xhj_A 55 TITLKAGIERALHEEV-PGVIEVEQVFLEH 83 (88)
T ss_dssp HHHHHHHHHHHHHHHS-TTCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHhC-CCceEEEeccccc
Confidence 4567889999999999 5444444443333
Done!