RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4159
(170 letters)
>gnl|CDD|216662 pfam01722, BolA, BolA-like protein. This family consist of the
morphoprotein BolA from E. coli and its various
homologues. In E. coli over expression of this protein
causes round morphology and may be involved in switching
the cell between elongation and septation systems during
cell division. The expression of BolA is growth rate
regulated and is induced during the transition into the
the stationary phase. BolA is also induced by stress
during early stages of growth and may have a general
role in stress response. It has also been suggested that
BolA can induce the transcription of penicillin binding
proteins 6 and 5.
Length = 72
Score = 57.6 bits (140), Expect = 7e-12
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 21/82 (25%)
Query: 69 AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
A L P+H++V +ES G SHFK+VVVS FE K + H
Sbjct: 5 AALPPAHLEVEDESHKGDG----------SHFKVVVVSDAFEGKSLVK----------RH 44
Query: 129 RLVQGALQDAGIYDIVHAIQIV 150
RLV AL++ + +HA+ I
Sbjct: 45 RLVYAALKEE-LASGIHALSIK 65
Score = 47.9 bits (115), Expect = 3e-08
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 19 ILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
+L L P+H++V +ES G SHFK+VVVS FE K + +
Sbjct: 2 LLEAALPPAHLEVEDESHKGDG----------SHFKVVVVSDAFEGKSLVKR 43
>gnl|CDD|223349 COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal
transduction mechanisms].
Length = 90
Score = 52.4 bits (126), Expect = 1e-09
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 15/82 (18%)
Query: 68 IAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRC 127
A PS +++I+ES H G + SHFK+V+VS F+ K +A R
Sbjct: 13 RAAFPPSFLEIIDESHRHHGHAGGGG----SHFKVVIVSEAFQGKSLVA---------R- 58
Query: 128 HRLVQGALQDAGIYDIVHAIQI 149
HRLV AL+D + +HA+ +
Sbjct: 59 HRLVYSALKDE-LSGGIHALAL 79
Score = 49.7 bits (119), Expect = 1e-08
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIA 69
+IE L PS +++I+ES H G + SHFK+V+VS F+ K +A
Sbjct: 7 RIEKKLRAAFPPSFLEIIDESHRHHGHAGGGG----SHFKVVIVSEAFQGKSLVA 57
>gnl|CDD|183243 PRK11628, PRK11628, transcriptional regulator BolA; Provisional.
Length = 105
Score = 45.9 bits (109), Expect = 4e-07
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 17/92 (18%)
Query: 56 VVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFI 115
+++ Q E K A P ++V++ES+ H + SE SHFK+V+VS +F + F+
Sbjct: 1 MMIREQIEEK-LRAAFQPVFLEVVDESYRHNVPAGSE-----SHFKVVLVSDRFTGERFL 54
Query: 116 AFIIILEVTSRCHRLVQGALQDAGIYDIVHAI 147
+R HR++ L + + VHA+
Sbjct: 55 ---------NR-HRMIYSTLAEE-LSTTVHAL 75
Score = 44.4 bits (105), Expect = 1e-06
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
+IE L P ++V++ES+ H + SE SHFK+V+VS +F + F+ +
Sbjct: 6 QIEEKLRAAFQPVFLEVVDESYRHNVPAGSE-----SHFKVVLVSDRFTGERFLNR 56
>gnl|CDD|227340 COG5007, COG5007, Predicted transcriptional regulator, BolA
superfamily [Transcription].
Length = 80
Score = 31.2 bits (71), Expect = 0.051
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 15/56 (26%)
Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
+I+++L L ++V + SHF+++ VS +F K + +
Sbjct: 5 EIKSLLENALPLEEVEVEGDG---------------SHFQVIAVSEEFAGKSRVKR 45
Score = 27.7 bits (62), Expect = 0.97
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 98 SHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQI 149
SHF+++ VS +F K + +LV L + +HA+ I
Sbjct: 26 SHFQVIAVSEEFAGKSRVKR----------QQLVYAPLMAYIADNEIHALSI 67
>gnl|CDD|236041 PRK07524, PRK07524, hypothetical protein; Provisional.
Length = 535
Score = 28.8 bits (65), Expect = 1.3
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 15/64 (23%)
Query: 36 FSHTGISPSEEPE-LASHFKIVVVSSQFENKPFIAKLNPSHI----DVINESFSHTGISP 90
FSHT +S + PE LA F V S A+ P HI DV+ H +P
Sbjct: 128 FSHTLMSAEDLPEVLARAF--AVFDS--------ARPRPVHIEIPLDVLAAPADHLLPAP 177
Query: 91 SEEP 94
P
Sbjct: 178 PTRP 181
>gnl|CDD|116303 pfam07689, KaiB, KaiB domain. The cyanobacterial clock proteins
KaiA and KaiB are proposed as regulators of the
circadian rhythm in cyanobacteria. Mutations in both
proteins have been reported to alter or abolish
circadian rhythmicity. KaiB adopts an alpha-beta
meander motif and is found to be a dimer.
Length = 82
Score = 26.9 bits (60), Expect = 2.1
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 41 ISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHT 86
I E+PELA ++V P + KL P + S+T
Sbjct: 35 IDVLEQPELAEEDRLVAT-------PTLIKLLPEPRQRLAGDLSNT 73
>gnl|CDD|153109 cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like
diiron-binding domain. Acyl-Acyl Carrier Protein
Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged
diiron-carboxylate enzyme, which belongs to a broad
superfamily of ferritin-like proteins and catalyzes the
NADPH and O2-dependent formation of a cis-double bond in
acyl-ACPs. Acyl-ACP desaturases are found in higher
plants and a few bacterial species (Mycobacterium
tuberculosis, M. leprae, M. avium and Streptomyces
avermitilis, S. coelicolor). In plants, Acyl-ACP
desaturase is a plastid-localized, covalently ACP
linked, soluble desaturase that introduces the first
double bound into saturated fatty acids, resulting in
the corresponding monounsaturated fatty acid. Members
of this class of soluble desaturases are specific for a
particular substrate chain length and introduce the
double bond between specific carbon atoms. For example,
delta 9 stearoyl-ACP is specific for stearic acid and
introduces a double bond between carbon 9 and 10 to
yield oleic acid in the ACP-bound form. The enzymatic
reaction requires molecular oxygen, NAD(P)H, NAD(P)H
ferredoxin oxido-reductase and ferredoxin. The enzyme is
active in the homodimeric form; the monomer consists
mainly of alpha-helices with the catalytic diiron center
buried within a four-helix bundle. Integral membrane
fatty acid desaturases that introduce double bonds into
fatty acid chains, acyl-CoA desaturases of animals,
yeasts, and fungi, and acyl-lipid desaturases of
cyanobacteria and higher plants, are distinct from
soluble acyl-ACP desaturases, lack diiron centers, and
are not included in this CD.
Length = 297
Score = 28.0 bits (63), Expect = 2.5
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 136 QDAGIYDIVHAIQIVMSV 153
AG+Y I+ +
Sbjct: 243 ARAGVYTARDYDDILEPL 260
>gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino
acid transport and metabolism].
Length = 396
Score = 28.0 bits (63), Expect = 3.0
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 18 NILTKKLNPSHIDVI---NESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPS 74
+ L P + D I FS+TG+SP + L F I +V+S N +A LN S
Sbjct: 327 DALKALGAPRNFDFIISQRGMFSYTGLSPEQVDRLREEFGIYLVASGRIN---VAGLNTS 383
Query: 75 HIDVINESFSH 85
+ID + ++ +
Sbjct: 384 NIDYVAKAIAA 394
>gnl|CDD|216564 pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are
necessary for efficient DNA transposition. This family
includes an amino-terminal region of the pilin gene
inverting protein (PIVML) and members of the
IS111A/IS1328/IS1533 family of transposases.
Length = 142
Score = 26.8 bits (60), Expect = 3.8
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 118 IIILEVTSRCHRLVQGALQDAGI-YDIVHAIQI 149
++++E T R + AL+DAG+ +V+ Q+
Sbjct: 48 LVVMEATGGYGRPLARALRDAGLDVVVVNPRQV 80
>gnl|CDD|236462 PRK09303, PRK09303, adaptive-response sensory kinase; Validated.
Length = 380
Score = 27.6 bits (62), Expect = 3.9
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 41 ISPSEEPELASHFKIVVVSSQFENKPFIAKLNP 73
I P E+PEL F++V P + K++P
Sbjct: 52 IDPGEQPELLELFRLVAT-------PALIKISP 77
Score = 27.6 bits (62), Expect = 4.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 88 ISPSEEPELASHFKIVV 104
I P E+PEL F++V
Sbjct: 52 IDPGEQPELLELFRLVA 68
>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in
Synaptotagmins 4 and 11. Synaptotagmin is a
membrane-trafficking protein characterized by a
N-terminal transmembrane region, a linker, and 2
C-terminal C2 domains. Synaptotagmins 4 and 11, class 4
synaptotagmins, are located in the brain. Their
functions are unknown. They are distinguished from the
other synaptotagmins by having and Asp to Ser
substitution in their C2A domains. Previously all
synaptotagmins were thought to be calcium sensors in the
regulation of neurotransmitter release and hormone
secretion, but it has been shown that not all of them
bind calcium. Of the 17 identified synaptotagmins only
8 bind calcium (1-3, 5-7, 9, 10). The function of the
two C2 domains that bind calcium are: regulating the
fusion step of synaptic vesicle exocytosis (C2A) and
binding to phosphatidyl-inositol-3,4,5-triphosphate
(PIP3) in the absence of calcium ions and to
phosphatidylinositol bisphosphate (PIP2) in their
presence (C2B). C2B also regulates also the recycling
step of synaptic vesicles. C2 domains fold into an
8-standed beta-sandwich that can adopt 2 structural
arrangements: Type I and Type II, distinguished by a
circular permutation involving their N- and C-terminal
beta strands. Many C2 domains are Ca2+-dependent
membrane-targeting modules that bind a wide variety of
substances including bind phospholipids, inositol
polyphosphates, and intracellular proteins. Most C2
domain proteins are either signal transduction enzymes
that contain a single C2 domain, such as protein kinase
C, or membrane trafficking proteins which contain at
least two C2 domains, such as synaptotagmin 1. However,
there are a few exceptions to this including RIM
isoforms and some splice variants of piccolo/aczonin and
intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. This cd contains the first C2
repeat, C2A, and has a type-I topology.
Length = 128
Score = 26.5 bits (59), Expect = 4.1
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 19 ILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDV 78
+L K NP V +E+F+ GI ++ +L+ HF V+ ++ S DV
Sbjct: 58 VLRKTRNP----VYDETFTFYGIPYNQLQDLSLHF-AVLSFDRY-----------SRDDV 101
Query: 79 INE-SFSHTGISPSEEPELASHFKIVV 104
I E G E EL +I
Sbjct: 102 IGEVVCPLAGADLLNEGELLVSREIQP 128
>gnl|CDD|225184 COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport
and metabolism].
Length = 283
Score = 26.9 bits (60), Expect = 6.2
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 6/27 (22%)
Query: 24 LNPSHIDVINESFSHTGISPSEEPELA 50
++PS I+V+N +F SPSEE E+A
Sbjct: 213 IHPSQIEVVNRAF-----SPSEE-EVA 233
Score = 26.9 bits (60), Expect = 6.2
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 6/27 (22%)
Query: 71 LNPSHIDVINESFSHTGISPSEEPELA 97
++PS I+V+N +F SPSEE E+A
Sbjct: 213 IHPSQIEVVNRAF-----SPSEE-EVA 233
>gnl|CDD|181731 PRK09257, PRK09257, aromatic amino acid aminotransferase;
Provisional.
Length = 396
Score = 26.6 bits (60), Expect = 8.3
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 36 FSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESF 83
FS++G++P + L F + V S N +A LN S+ID + E+
Sbjct: 348 FSYSGLTPEQVDRLREEFGVYAVGSGRIN---VAGLNESNIDYVAEAI 392
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.369
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,492,453
Number of extensions: 793054
Number of successful extensions: 679
Number of sequences better than 10.0: 1
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 26
Length of query: 170
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 80
Effective length of database: 6,945,742
Effective search space: 555659360
Effective search space used: 555659360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)