RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4159
(170 letters)
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene,
structural GEN NPPSFA; NMR {Escherichia coli str}
Length = 107
Score = 63.9 bits (156), Expect = 3e-14
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 16/81 (19%)
Query: 69 AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
A P ++V++ES+ H + SE SHFK+V+VS +F + F+ H
Sbjct: 20 AAFQPVFLEVVDESYRHNVPAGSE-----SHFKVVLVSDRFTGERFLN----------RH 64
Query: 129 RLVQGALQDAGIYDIVHAIQI 149
R++ L + + VHA+ +
Sbjct: 65 RMIYSTLAEE-LSTTVHALAL 84
Score = 61.2 bits (149), Expect = 4e-13
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 3 ASSQVTKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQF 62
SS + I +IE L P ++V++ES+ H + SE SHFK+V+VS +F
Sbjct: 1 GSSGSSGMMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSE-----SHFKVVLVSDRF 55
Query: 63 ENKPFIA 69
+ F+
Sbjct: 56 TGERFLN 62
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 123
Score = 63.2 bits (154), Expect = 1e-13
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 69 AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
L+P +++ NES H + SE +HF++ VVSS+FE + H
Sbjct: 37 QALSPEVLELRNESGGHAVPAGSE-----THFRVAVVSSRFEGMSPLQ----------RH 81
Query: 129 RLVQGALQDAGIYDIVHAIQI 149
RLV AL + + VHA+ I
Sbjct: 82 RLVHEALSEE-LAGPVHALAI 101
Score = 59.4 bits (144), Expect = 3e-12
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIA 69
I L + L+P +++ NES H + SE +HF++ VVSS+FE +
Sbjct: 30 AIRAKLEQALSPEVLELRNESGGHAVPAGSE-----THFRVAVVSSRFEGMSPLQ 79
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase
morphogene, stress-induced morphogene, structural
genomics; NMR {Mus musculus} SCOP: d.52.6.1
Length = 113
Score = 58.7 bits (142), Expect = 5e-12
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 26/83 (31%)
Query: 69 AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
L H++V + + + + F+++VVS++FE KP + H
Sbjct: 41 QDLEAEHVEVEDTTLNRCA----------TSFRVLVVSAKFEGKPLLQ----------RH 80
Query: 129 RLVQGALQD--AGIYDIVHAIQI 149
RLV L + I HA +
Sbjct: 81 RLVNECLAEELPHI----HAFEQ 99
Score = 55.6 bits (134), Expect = 6e-11
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIA 69
+ L + L H++V + + + + F+++VVS++FE KP +
Sbjct: 34 YLREKLRQDLEAEHVEVEDTTLNRCA----------TSFRVLVVSAKFEGKPLLQ 78
>2kdn_A Putative uncharacterized protein PFE0790C; solution structure,
ssgcid, seattle structural genomics center for
infectious disease; NMR {Plasmodium falciparum}
Length = 108
Score = 56.3 bits (136), Expect = 3e-11
Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 28/115 (24%)
Query: 37 SHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPEL 96
SH S E + + E+K + L P+ ++++++S
Sbjct: 4 SHHHHHHSSGRENLYFQGHMCIQKVIEDK-LSSALKPTFLELVDKSCGC----------- 51
Query: 97 ASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQD--AGIYDIVHAIQI 149
+ F V+VS+ FE+K + HRLV L++ I HA +
Sbjct: 52 GTSFDAVIVSNNFEDKKLLD----------RHRLVNTILKEELQNI----HAFSM 92
Score = 52.8 bits (127), Expect = 5e-10
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 11/55 (20%)
Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIA 69
IE+ L+ L P+ ++++++S + F V+VS+ FE+K +
Sbjct: 28 VIEDKLSSALKPTFLELVDKSCGC-----------GTSFDAVIVSNNFEDKKLLD 71
>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom
center for infectious disease, BOL like protein, unknown
FU; 1.95A {Babesia bovis}
Length = 105
Score = 52.5 bits (126), Expect = 9e-10
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 23/81 (28%)
Query: 69 AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
+ L+P + V + S + F +VS QFE K +
Sbjct: 34 SMLSPQFLKVTDNSGGC-----------GAAFNAYIVSQQFEGKGLLD----------RQ 72
Query: 129 RLVQGALQDAGIYDIVHAIQI 149
RLV A+ +HA +
Sbjct: 73 RLVNSAIAAE--MPQIHAFTM 91
Score = 49.4 bits (118), Expect = 1e-08
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 11/55 (20%)
Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIA 69
+E L L+P + V + S + F +VS QFE K +
Sbjct: 27 IVEERLRSMLSPQFLKVTDNSGGC-----------GAAFNAYIVSQQFEGKGLLD 70
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A
{Coxiella burnetii}
Length = 82
Score = 43.1 bits (102), Expect = 1e-06
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 25/81 (30%)
Query: 69 AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
L+ S + HF+ VV+ FE + + H
Sbjct: 16 TGLSESRVISAEGD--------------GHHFEAVVLCPTFEGQTALT----------RH 51
Query: 129 RLVQGALQDAGIYDIVHAIQI 149
RLV AL + +HA+ +
Sbjct: 52 RLVYNALGSH-MQSDIHALSL 71
Score = 40.8 bits (96), Expect = 1e-05
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 14/56 (25%)
Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
I+ + L+ S + HF+ VV+ FE + + +
Sbjct: 9 DIKQWIETGLSESRVISAEGD--------------GHHFEAVVLCPTFEGQTALTR 50
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN
integrated structural and functional genomic project,
unknown function; NMR {Synthetic}
Length = 80
Score = 40.8 bits (96), Expect = 1e-05
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 25/81 (30%)
Query: 69 AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
+ L + +DV E HF+ VVS F K +A H
Sbjct: 17 SGLPEARVDVQGED--------------GVHFEATVVSPAFVGKAPLA----------RH 52
Query: 129 RLVQGALQDAGIYDIVHAIQI 149
R+V L + + +HA+Q+
Sbjct: 53 RMVYATLGEL-MGGAIHALQL 72
Score = 37.7 bits (88), Expect = 1e-04
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 14/56 (25%)
Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
I ++ L + +DV E HF+ VVS F K +A+
Sbjct: 10 TIRKLIESGLPEARVDVQGED--------------GVHFEATVVSPAFVGKAPLAR 51
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG,
structural genomics, PSI, protein structure initiative;
NMR {Escherichia coli} SCOP: d.52.6.1
Length = 97
Score = 40.5 bits (95), Expect = 2e-05
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 25/81 (30%)
Query: 69 AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
L+ + V + SHF+++ V F+ +
Sbjct: 17 NALSLQEVHVSGDG---------------SHFQVIAVGELFDGMSRVK----------KQ 51
Query: 129 RLVQGALQDAGIYDIVHAIQI 149
+ V G L + + +HA+ I
Sbjct: 52 QTVYGPLMEYIADNRIHAVSI 72
Score = 38.2 bits (89), Expect = 1e-04
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 15/56 (26%)
Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
+I+++L L+ + V + SHF+++ V F+ + K
Sbjct: 10 EIQSVLMNALSLQEVHVSGDG---------------SHFQVIAVGELFDGMSRVKK 50
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 7e-05
Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 37/138 (26%)
Query: 23 KLNPSHIDVINESFSHTG--ISPSEEPELASHFKIVVVSSQFENKPFI-AKLNPSHIDVI 79
L P ++D +SH G + E PE + F++V F + F+ K+
Sbjct: 463 DLIPPYLD--QYFYSHIGHHLKNIEHPERMTLFRMV-----FLDFRFLEQKIR------- 508
Query: 80 NESFSHTGISPSEEPELASHFKIVVVSSQF--ENKP--------FIAFIIILE---VTSR 126
H + + + + + + + +N P + F+ +E + S+
Sbjct: 509 -----HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 127 CHRLVQGALQ--DAGIYD 142
L++ AL D I++
Sbjct: 564 YTDLLRIALMAEDEAIFE 581
Score = 33.7 bits (76), Expect = 0.028
Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 52/190 (27%)
Query: 8 TKNK-ITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKP 66
T+ K +T + T HI + + S ++P E L + +
Sbjct: 272 TRFKQVTDFLSAATTT-----HISLDHHS---MTLTPDEVKSL---LLKYLDCRPQDLPR 320
Query: 67 FIAKLNPSHIDVINESFS-----------------HTGISPS----EEPELASHFKIVVV 105
+ NP + +I ES T I S E E F + V
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 106 SSQFE---NKPFIAFIII---------LEVTSRCHR--LVQGALQDAGIYDIVHAIQIVM 151
F + P I +I + V ++ H+ LV+ +++ I + +I + +
Sbjct: 381 ---FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--IPSIYLEL 435
Query: 152 SVSLPILLRL 161
V L L
Sbjct: 436 KVKLENEYAL 445
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic
ehrlichiosis, STRE response, structural genomics; NMR
{Ehrlichia chaffeensis}
Length = 76
Score = 37.0 bits (86), Expect = 2e-04
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 14/52 (26%)
Query: 98 SHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQI 149
+H+ I V+SSQF+ K + HR++ L I HAIQI
Sbjct: 34 NHYSIKVISSQFQGKSKLE----------QHRMIYKVLDGLNI----HAIQI 71
Score = 33.5 bits (77), Expect = 0.005
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
++E ++ + I V S +H+ I V+SSQF+ K + +
Sbjct: 10 QLELLIRNAFPEAEITV--TSLVGDN----------NHYSIKVISSQFQGKSKLEQ 53
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 4e-04
Identities = 32/189 (16%), Positives = 55/189 (29%), Gaps = 55/189 (29%)
Query: 27 SHIDVINESFSHTGISPSE------EP----ELASHFKIVVVSSQFENKPFIAKLNPSHI 76
+ E F+ P+E EP EL F + VSS E
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF-LGYVSSLVEPSK-----VGQFD 81
Query: 77 DVINESFS------------HT---GISPSEEPELASHFKIV---VVSSQFENKPFIAFI 118
V+N + H + + L +++ + + +PF
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 119 --IILE-VTSRCHRLV-----QGA-------LQDAGIYDI----VHAIQIVMSVSLPILL 159
+ V +LV QG L+D +Y V + + +L L+
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD--LYQTYHVLVGDLIKFSAETLSELI 199
Query: 160 RLCLTLDPY 168
R L +
Sbjct: 200 RTTLDAEKV 208
Score = 26.9 bits (59), Expect = 4.2
Identities = 24/151 (15%), Positives = 40/151 (26%), Gaps = 59/151 (39%)
Query: 36 FSHTGISPSEEPELASHF------KI----------VVVSSQFENKPFIAKLNPSHIDVI 79
FS I + L HF +I +V + + + ++N
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 80 NESFSHTGISPSEE--------PELASHFKIVVVS-SQFE------NKPFIAFIIILEVT 124
F P A + ++ + FE P A
Sbjct: 1719 ---FRS----EKGLLSATQFTQP--A----LTLMEKAAFEDLKSKGLIPADATF------ 1759
Query: 125 SRC-HRLVQG---AL-QDAGIYDIVHAIQIV 150
H L G AL A + I +++V
Sbjct: 1760 --AGHSL--GEYAALASLADVMSIESLVEVV 1786
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural
genomics, PSI, protein structure initiative; 1.84A
{Deinococcus radiodurans} SCOP: c.1.12.5
Length = 284
Score = 31.4 bits (72), Expect = 0.12
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 67 FIAKL--NPSHIDVINESFSHTGISPSEEPELA 97
+ KL +P+ + + +E F P+E + A
Sbjct: 215 YSGKLCIHPAQVALAHEYF-----GPTEA-DRA 241
Score = 29.8 bits (68), Expect = 0.41
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 6/26 (23%)
Query: 25 NPSHIDVINESFSHTGISPSEEPELA 50
+P+ + + +E F P+E + A
Sbjct: 222 HPAQVALAHEYF-----GPTEA-DRA 241
>1u5h_A CITE; TIM barrel, structural genomics, PSI, protein structure
initiative, TB structural genomics consortium, TBSGC,
lyase; 1.65A {Mycobacterium tuberculosis} SCOP: c.1.12.5
PDB: 1u5v_A* 1z6k_A
Length = 273
Score = 31.0 bits (71), Expect = 0.17
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 67 FIAKL--NPSHIDVINESFSHTGISPSEEPELA 97
F + +PS I V+ +++ + S E +LA
Sbjct: 203 FDVTVCIHPSQIPVVRKAY-----AASHE-KLA 229
Score = 29.0 bits (66), Expect = 0.73
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 6/26 (23%)
Query: 25 NPSHIDVINESFSHTGISPSEEPELA 50
+PS I V+ +++ + S E +LA
Sbjct: 210 HPSQIPVVRKAY-----AASHE-KLA 229
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Length = 316
Score = 30.3 bits (69), Expect = 0.29
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 67 FIAKL--NPSHIDVINESFSHTGISPSEEPELA 97
F AK +P+ I IN F +P+ E+
Sbjct: 250 FSAKAAIHPAQISTINTLF-----TPTAA-EIR 276
Score = 28.7 bits (65), Expect = 0.91
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 6/26 (23%)
Query: 25 NPSHIDVINESFSHTGISPSEEPELA 50
+P+ I IN F +P+ E+
Sbjct: 257 HPAQISTINTLF-----TPTAA-EIR 276
>3oyz_A Malate synthase; TIM barrel, transferase; HET: ACO; 1.95A
{Haloferax volcanii} PDB: 3oyx_A* 3pug_A
Length = 433
Score = 30.2 bits (68), Expect = 0.30
Identities = 5/33 (15%), Positives = 7/33 (21%), Gaps = 6/33 (18%)
Query: 24 LNPSHIDVINESFSHTGISPSEEPELASHFKIV 56
L P + N S P +
Sbjct: 259 LTPGQVVEANTSP-----LPPKT-GSWLLDADG 285
Score = 30.2 bits (68), Expect = 0.30
Identities = 5/33 (15%), Positives = 7/33 (21%), Gaps = 6/33 (18%)
Query: 71 LNPSHIDVINESFSHTGISPSEEPELASHFKIV 103
L P + N S P +
Sbjct: 259 LTPGQVVEANTSP-----LPPKT-GSWLLDADG 285
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.59
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 26/55 (47%)
Query: 9 KNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFE 63
K + K++ L KL + P LA + + E
Sbjct: 19 KQALK-KLQASL--KL----------------YADDSAPALA-------IKATME 47
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; 2.24A {Burkholderia xenovorans}
Length = 339
Score = 29.2 bits (66), Expect = 0.60
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 67 FIAKL--NPSHIDVINESFSHTGISPSEEPELA 97
+ +P+ I+ I +F +P +E E+
Sbjct: 248 YTRMWSIHPAQIEAIVAAF-----APRDE-EIT 274
Score = 28.1 bits (63), Expect = 1.5
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
Query: 25 NPSHIDVINESFSHTGISPSEEPELA 50
+P+ I+ I +F +P +E E+
Sbjct: 255 HPAQIEAIVAAF-----APRDE-EIT 274
>3r1j_A Alpha-ketoglutarate-dependent taurine dioxygenase; ssgcid,
oxidoreductase, structural genomics; 2.05A
{Mycobacterium avium} PDB: 3swt_A
Length = 301
Score = 28.8 bits (65), Expect = 0.78
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 24/108 (22%)
Query: 16 IENI-LTKKLNPSHIDVINESFSH---------TGISPSEEPELASHFKIVVVSSQFENK 65
++ + L L+ + ++ I + + S + E A
Sbjct: 22 VDGVRLGGDLDDATVEQIRRALLTHKVIFFRHQHHLDDSRQLEFARLL------GTPIGH 75
Query: 66 PFIAKLNPSHIDVINESFS--------HTGISPSEEPELASHFKIVVV 105
P + L H+ VI S HT ++ + AS + V +
Sbjct: 76 PAASALAAKHLPVITPIDSEYGKATRWHTDVTFAANYPAASILRAVTL 123
>3qqw_A Putative citrate lyase; TIM beta/alpha-barrel, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative; HET: MSE; 2.44A {Ralstonia
eutropha}
Length = 332
Score = 28.5 bits (64), Expect = 1.2
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 8/33 (24%)
Query: 67 FIAKL--NPSHIDVINESFSHTGISPSEEPELA 97
F+ P+ I I + P E+
Sbjct: 249 FLRMWSIYPAQIQPIVNAM-----RPDFT-EVE 275
Score = 26.9 bits (60), Expect = 3.1
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 6/27 (22%)
Query: 24 LNPSHIDVINESFSHTGISPSEEPELA 50
+ P+ I I + P E+
Sbjct: 255 IYPAQIQPIVNAM-----RPDFT-EVE 275
>1sqh_A Hypothetical protein CG14615-PA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Drosophila melanogaster} SCOP:
d.108.1.5
Length = 312
Score = 27.0 bits (59), Expect = 2.9
Identities = 16/108 (14%), Positives = 39/108 (36%), Gaps = 13/108 (12%)
Query: 24 LNPSHIDVINESFSHTGISPSEE---------PELASHFKIVVVSSQFENKPFIAKLNPS 74
++ + + E G++ + E A K+ + S+FE I +L
Sbjct: 127 VDLGFCNRVKELAVSRGVTAIQPRQCFGMVLSHEDAFCAKVPDLPSEFE----IRRLRAE 182
Query: 75 HIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILE 122
++++S+ + G + F + + + IA+I +
Sbjct: 183 DAAMVHDSWPNKGEGSLTYLQALVRFNKSLGICRSDTGELIAWIFQND 230
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP]
desaturase) (stearoyl-ACP...; four-helix bundle, metal
binding protein; 2.00A {Mycobacterium tuberculosis}
SCOP: a.25.1.2
Length = 275
Score = 26.9 bits (59), Expect = 3.4
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 134 ALQDAGIYDIVHAIQIVMSV 153
+ DAGI+ Q++
Sbjct: 238 NVADAGIFGKPQLRQLISDR 257
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase;
2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB:
1tz3_A* 1tz6_A*
Length = 339
Score = 26.4 bits (59), Expect = 5.5
Identities = 4/35 (11%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 24 LNPSHIDVINES--FSHTGISPSEEPELASHFKIV 56
++P + + F + I ++ P + +
Sbjct: 131 VSPQDLPPFRQYEWFYFSSIGLTDRPAREACLEGA 165
Score = 26.4 bits (59), Expect = 5.5
Identities = 4/35 (11%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 71 LNPSHIDVINES--FSHTGISPSEEPELASHFKIV 103
++P + + F + I ++ P + +
Sbjct: 131 VSPQDLPPFRQYEWFYFSSIGLTDRPAREACLEGA 165
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 26.0 bits (58), Expect = 7.7
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 54 KIVVVSSQFENKPFIAKLNPSH-IDVINESFSHTGISPSEEPELASHFKIVVVSSQ 108
K++ + P N D+ ++ E E+A+ F V++
Sbjct: 2 KVLCYGVRDVELPIFEACNKEFGYDIK---CVPDYLNTKETAEMAAGFDAVILRGN 54
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis,
ligand binding, transferase; 2.00A {Schizosaccharomyces
pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A*
1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Length = 159
Score = 25.6 bits (57), Expect = 7.9
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 14/54 (25%)
Query: 83 FSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQ 136
FS P+ +I++V ++ N LV+GA++
Sbjct: 2 FSGIK-GPNPSDLKGPELRILIVHARG-N----LQA--------IEPLVKGAVE 41
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 25.6 bits (57), Expect = 8.7
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 53 FKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQ 108
KI + + + KPF+ + +H DV E + E LA VVV Q
Sbjct: 2 TKIFAYAIREDEKPFLKEWEDAHKDV--EVEYTDKLLTPETVALAKGADGVVVYQQ 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.369
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,502,125
Number of extensions: 147395
Number of successful extensions: 401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 48
Length of query: 170
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 83
Effective length of database: 4,272,666
Effective search space: 354631278
Effective search space used: 354631278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)