RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4159
(170 letters)
>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 113
Score = 47.6 bits (113), Expect = 3e-08
Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 16 IENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
+ L + L H++V + + + + F+++VVS++FE KP + +
Sbjct: 35 LREKLRQDLEAEHVEVEDTTLNRCA----------TSFRVLVVSAKFEGKPLLQR 79
Score = 46.8 bits (111), Expect = 5e-08
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 22/81 (27%)
Query: 69 AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
L H++V + + + + F+++VVS++FE KP + H
Sbjct: 41 QDLEAEHVEVEDTTLNRCA----------TSFRVLVVSAKFEGKPLLQ----------RH 80
Query: 129 RLVQGALQDAGIYDIVHAIQI 149
RLV L + +HA +
Sbjct: 81 RLVNECLAE--ELPHIHAFEQ 99
>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli
[TaxId: 562]}
Length = 97
Score = 42.1 bits (99), Expect = 2e-06
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 25/81 (30%)
Query: 69 AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
L+ + V + SHF+++ V F+ +
Sbjct: 17 NALSLQEVHVSGDG---------------SHFQVIAVGELFDGMSRVK----------KQ 51
Query: 129 RLVQGALQDAGIYDIVHAIQI 149
+ V G L + + +HA+ I
Sbjct: 52 QTVYGPLMEYIADNRIHAVSI 72
Score = 38.6 bits (90), Expect = 4e-05
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 15/56 (26%)
Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
+I+++L L+ + V + SHF+++ V F+ + K
Sbjct: 10 EIQSVLMNALSLQEVHVSGDG---------------SHFQVIAVGELFDGMSRVKK 50
>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase
{Lactobacillus helveticus [TaxId: 1587]}
Length = 134
Score = 28.0 bits (62), Expect = 0.33
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 54 KIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSS 107
KI + + + KPF+ + +H DV E + E LA VVV
Sbjct: 2 KIFAYAIREDEKPFLKEWEDAHKDV--EVEYTDKLLTPETVALAKGADGVVVYQ 53
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate
dehydrogenase {Lactobacillus casei [TaxId: 1582]}
Length = 131
Score = 27.3 bits (60), Expect = 0.54
Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 5/56 (8%)
Query: 54 KIVVVSSQFENKPFIAKLNPSH-IDVINESFSHTGISPSEEPELASHFKIVVVSSQ 108
KI+ ++ + + + + HT E A F +
Sbjct: 2 KIIAYGARVDEIQYFKQWAKDTGNTLEY----HTEFLDENTVEWAKGFDGINSLQT 53
>d1u5ha_ c.1.12.5 (A:) Citrate lyase, beta subunit {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 223
Score = 26.7 bits (58), Expect = 1.4
Identities = 4/14 (28%), Positives = 11/14 (78%)
Query: 24 LNPSHIDVINESFS 37
++PS I V+ ++++
Sbjct: 209 IHPSQIPVVRKAYA 222
Score = 26.7 bits (58), Expect = 1.4
Identities = 4/14 (28%), Positives = 11/14 (78%)
Query: 71 LNPSHIDVINESFS 84
++PS I V+ ++++
Sbjct: 209 IHPSQIPVVRKAYA 222
>d1sgja_ c.1.12.5 (A:) Citrate lyase, beta subunit {Deinococcus
radiodurans [TaxId: 1299]}
Length = 231
Score = 25.2 bits (54), Expect = 3.8
Identities = 5/19 (26%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 67 FIAKL--NPSHIDVINESF 83
+ KL +P+ + + +E F
Sbjct: 212 YSGKLCIHPAQVALAHEYF 230
Score = 25.2 bits (54), Expect = 4.0
Identities = 3/13 (23%), Positives = 9/13 (69%)
Query: 24 LNPSHIDVINESF 36
++P+ + + +E F
Sbjct: 218 IHPAQVALAHEYF 230
>d1sqha_ d.108.1.5 (A:) Hypothetical protein cg14615-pa {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 297
Score = 25.3 bits (55), Expect = 4.4
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 48 ELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSH 85
E A K+ + S+FE I +L ++++S+ +
Sbjct: 154 EDAFCAKVPDLPSEFE----IRRLRAEDAAMVHDSWPN 187
>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein]
desaturase {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 267
Score = 24.8 bits (54), Expect = 5.2
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 134 ALQDAGIYDIVHAIQIVMSV 153
+ DAGI+ Q++
Sbjct: 231 NVADAGIFGKPQLRQLISDR 250
>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA,
N-terminal domain {Synechococcus elongatus [TaxId:
32046]}
Length = 105
Score = 24.0 bits (52), Expect = 5.9
Identities = 5/17 (29%), Positives = 14/17 (82%)
Query: 41 ISPSEEPELASHFKIVV 57
I+ +++P+L ++++VV
Sbjct: 50 INVADQPQLVEYYRLVV 66
Score = 24.0 bits (52), Expect = 5.9
Identities = 5/17 (29%), Positives = 14/17 (82%)
Query: 88 ISPSEEPELASHFKIVV 104
I+ +++P+L ++++VV
Sbjct: 50 INVADQPQLVEYYRLVV 66
>d1r5pa_ c.47.1.15 (A:) Circadian oscillation regulator KaiB
{Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]}
Length = 90
Score = 23.5 bits (51), Expect = 9.2
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 41 ISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHT 86
I + P+LA KI+ P ++K+ P + I S
Sbjct: 39 IDVLKNPQLAEEDKILAT-------PTLSKILPPPVRKIIGDLSDR 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.369
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 605,739
Number of extensions: 27377
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 19
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)