BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy416
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUX|A Chain A, Structure Of The C Domain Of Synapsin Ia From Bovine Brain
With Calcium Atp-Gamma-S Bound
pdb|1AUX|B Chain B, Structure Of The C Domain Of Synapsin Ia From Bovine Brain
With Calcium Atp-Gamma-S Bound
Length = 311
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 41 PLKKDALRQLGIPIEIKSGF----IGKVKLQVPVSQFRSAPWVICIEQLYVVTGPVSMAQ 96
P K+ L P+ +K G +GKVK+ F+ V+ + + Y T P A+
Sbjct: 144 PNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQ-HDFQDIASVVALTKTYATTEPFIDAK 202
Query: 97 WDEELEERAAQEYKIMLLDALEARWRAETESA 128
+D ++ + Q YK + ++ W+ T SA
Sbjct: 203 YDVRIQ-KIGQNYKAYMRTSVSGNWKTNTGSA 233
>pdb|1PK8|A Chain A, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|B Chain B, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|C Chain C, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|D Chain D, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|E Chain E, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|F Chain F, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|G Chain G, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|H Chain H, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PX2|A Chain A, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp (Form 1)
pdb|1PX2|B Chain B, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp (Form 1)
Length = 422
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 41 PLKKDALRQLGIPIEIKSGF----IGKVKLQVPVSQFRSAPWVICIEQLYVVTGPVSMAQ 96
P K+ L P+ +K G +GKVK+ F+ V+ + + Y P A+
Sbjct: 254 PNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQ-HDFQDIASVVALTKTYATAEPFIDAK 312
Query: 97 WDEELEERAAQEYKIMLLDALEARWRAETESA 128
+D ++ + Q YK + ++ W+ T SA
Sbjct: 313 YDVRVQ-KIGQNYKAYMRTSVSGNWKTNTGSA 343
>pdb|1X1N|A Chain A, Structure Determination And Refinement At 1.8 A Resolution
Of Disproportionating Enzyme From Potato
Length = 524
Score = 29.6 bits (65), Expect = 0.69, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 16 KYVENLNTDQLSVALLQGAVELENLPLKKDALRQLGIPIEIKSGFIGKVKLQVPVSQFRS 75
KY+ N+ +++S L++GAV R IP++ G ++ +P +QF +
Sbjct: 442 KYLSNIEEEEISRGLIEGAVS--------SVARIAIIPMQDVLGLGSDSRMNIPATQFGN 493
Query: 76 APWVI 80
W I
Sbjct: 494 WSWRI 498
>pdb|2P0A|A Chain A, The Crystal Structure Of Human Synapsin Iii (Syn3) In
Complex With Amppnp
pdb|2P0A|B Chain B, The Crystal Structure Of Human Synapsin Iii (Syn3) In
Complex With Amppnp
Length = 344
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 35 VELENLPLKKDALRQLGIPIEIKSGF----IGKVKLQVPVSQFRSAPWVICIEQLYVVTG 90
VE P K + P+ +K G +GK+K++ + F+ V+ + + Y T
Sbjct: 153 VEQTFFPNHKPMVTAPHFPVVVKLGHAHAGMGKIKVENQL-DFQDITSVVAMAKTYATTE 211
Query: 91 PVSMAQWDEELEERAAQEYKIMLLDALEARWRAETESA 128
+++D ++ + YK + ++ W+A T SA
Sbjct: 212 AFIDSKYDIRIQ-KIGSNYKAYMRTSISGNWKANTGSA 248
>pdb|1AX4|A Chain A, Tryptophanase From Proteus Vulgaris
pdb|1AX4|B Chain B, Tryptophanase From Proteus Vulgaris
pdb|1AX4|C Chain C, Tryptophanase From Proteus Vulgaris
pdb|1AX4|D Chain D, Tryptophanase From Proteus Vulgaris
Length = 467
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 45 DALRQLGIPIEIKSG----FIGKVKL--QVPVSQFRSAPWVICIEQLYVVTG 90
D LR+ GIPI+ +G F+ KL Q+P QF P I LY+ +G
Sbjct: 337 DRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQF---PAQAVINALYLESG 385
>pdb|3LTO|A Chain A, Crystal Structure Of A Mevalonate Diphosphate
Decarboxylase From Legionella Pneumophila
pdb|3LTO|B Chain B, Crystal Structure Of A Mevalonate Diphosphate
Decarboxylase From Legionella Pneumophila
Length = 323
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 13 YLGKYVENLN---TDQLSVAL--LQGAVELENLPLKKDALRQLGIP 53
Y GK EN N LS L L +V+LE LP KKD L IP
Sbjct: 16 YXGKKDENSNLPDNSSLSYTLSNLLSSVKLEKLPTKKDIWEPLTIP 61
>pdb|2XED|A Chain A, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
pdb|2XED|B Chain B, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
pdb|2XED|C Chain C, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
pdb|2XED|D Chain D, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
Length = 273
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 20 NLNTDQLSVALLQGAVELENLPLKKDALRQLGIPI 54
+L+ ++ ++ AV++ +LPL + A R+ GIP+
Sbjct: 202 SLDLSEVDALVISCAVQMPSLPLVETAEREFGIPV 236
>pdb|3TAI|A Chain A, Crystal Structure Of Nura
pdb|3TAI|B Chain B, Crystal Structure Of Nura
pdb|3TAL|A Chain A, Crystal Structure Of Nura With Manganese
pdb|3TAL|B Chain B, Crystal Structure Of Nura With Manganese
Length = 471
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 62 GKVKLQVPVSQFRSAPWVICIEQLYVVTGPVSMAQWDEELEERAAQEY--KIMLLDALE 118
GKVK+++P +P VI IE L G S+ + +EL+E + Y K + DAL
Sbjct: 234 GKVKVKIPRKALGYSPRVIPIEVLESSRGK-SVDELLQELDEEKVELYLGKDDIYDALH 291
>pdb|3TAZ|A Chain A, Crystal Structure Of Nura Bound To Damp And Manganese
pdb|3TAZ|B Chain B, Crystal Structure Of Nura Bound To Damp And Manganese
Length = 471
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 62 GKVKLQVPVSQFRSAPWVICIEQLYVVTGPVSMAQWDEELEERAAQEY--KIMLLDALE 118
GKVK+++P +P VI IE L G S+ + +EL+E + Y K + DAL
Sbjct: 234 GKVKVKIPRKALGYSPRVIPIEVLESSRGK-SVDELLQELDEEKVELYLGKDDIYDALH 291
>pdb|1R27|A Chain A, Crystal Structure Of Nargh Complex
pdb|1R27|C Chain C, Crystal Structure Of Nargh Complex
pdb|1SIW|A Chain A, Crystal Structure Of The Apomolybdo-Narghi
pdb|1Y4Z|A Chain A, The Crystal Structure Of Nitrate Reductase A, Narghi, In
Complex With The Q-Site Inhibitor Pentachlorophenol
pdb|1Y5I|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-K86a
pdb|1Y5L|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-H66y
pdb|1Y5N|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-K86a In
Complex With Pentachlorophenol
Length = 1246
Score = 26.2 bits (56), Expect = 7.7, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 25 QLSVALLQGAVELENLPLKKDALRQLGIPIEIKSGFIGKVKLQVPVSQFRSAPWVICIEQ 84
++ V L ++ LP++ D+ +L P+++K G+ L +P ++AP ++ +E+
Sbjct: 835 EVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDL-IP---GKTAPHIMVVER 890
Query: 85 LYVVT 89
Y T
Sbjct: 891 DYPAT 895
>pdb|3IR7|A Chain A, Crystal Structure Of Narghi Mutant Narg-R94s
Length = 1247
Score = 26.2 bits (56), Expect = 7.7, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 25 QLSVALLQGAVELENLPLKKDALRQLGIPIEIKSGFIGKVKLQVPVSQFRSAPWVICIEQ 84
++ V L ++ LP++ D+ +L P+++K G+ L +P ++AP ++ +E+
Sbjct: 836 EVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDL-IP---GKTAPHIMVVER 891
Query: 85 LYVVT 89
Y T
Sbjct: 892 DYPAT 896
>pdb|1Q16|A Chain A, Crystal Structure Of Nitrate Reductase A, Narghi, From
Escherichia Coli
Length = 1247
Score = 26.2 bits (56), Expect = 7.7, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 25 QLSVALLQGAVELENLPLKKDALRQLGIPIEIKSGFIGKVKLQVPVSQFRSAPWVICIEQ 84
++ V L ++ LP++ D+ +L P+++K G+ L +P ++AP ++ +E+
Sbjct: 836 EVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDL-IP---GKTAPHIMVVER 891
Query: 85 LYVVT 89
Y T
Sbjct: 892 DYPAT 896
>pdb|3EGW|A Chain A, The Crystal Structure Of The Narghi Mutant Narh - C16a
Length = 1244
Score = 26.2 bits (56), Expect = 8.0, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 25 QLSVALLQGAVELENLPLKKDALRQLGIPIEIKSGFIGKVKLQVPVSQFRSAPWVICIEQ 84
++ V L ++ LP++ D+ +L P+++K G+ L +P ++AP ++ +E+
Sbjct: 835 EVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDL-IP---GKTAPHIMVVER 890
Query: 85 LYVVT 89
Y T
Sbjct: 891 DYPAT 895
>pdb|3IR5|A Chain A, Crystal Structure Of Narghi Mutant Narg-H49c
Length = 1247
Score = 26.2 bits (56), Expect = 8.0, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 25 QLSVALLQGAVELENLPLKKDALRQLGIPIEIKSGFIGKVKLQVPVSQFRSAPWVICIEQ 84
++ V L ++ LP++ D+ +L P+++K G+ L +P ++AP ++ +E+
Sbjct: 836 EVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDL-IP---GKTAPHIMVVER 891
Query: 85 LYVVT 89
Y T
Sbjct: 892 DYPAT 896
>pdb|3IR6|A Chain A, Crystal Structure Of Narghi Mutant Narg-H49s
Length = 1247
Score = 26.2 bits (56), Expect = 8.1, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 25 QLSVALLQGAVELENLPLKKDALRQLGIPIEIKSGFIGKVKLQVPVSQFRSAPWVICIEQ 84
++ V L ++ LP++ D+ +L P+++K G+ L +P ++AP ++ +E+
Sbjct: 836 EVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDL-IP---GKTAPHIMVVER 891
Query: 85 LYVVT 89
Y T
Sbjct: 892 DYPAT 896
>pdb|2D6F|C Chain C, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
pdb|2D6F|D Chain D, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
Length = 619
Score = 26.2 bits (56), Expect = 9.1, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 32 QGAVELENLPLKKDALRQLGIPIEIKSGFIGKV-KLQVPVSQFRSAPWVICIEQL 85
QG V++ENL L++DA R++ E G + ++ +L +P+ + + P + +QL
Sbjct: 146 QGTVKIENLCLEEDAARRIR---ETGDGVVFRLDRLGIPLVEITTDPSMSDPQQL 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,859,332
Number of Sequences: 62578
Number of extensions: 133200
Number of successful extensions: 341
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 18
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)