Query psy416
Match_columns 157
No_of_seqs 143 out of 579
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 18:25:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12624 Chorein_N: N-terminal 100.0 1.8E-35 3.8E-40 215.9 12.6 117 2-118 1-118 (118)
2 COG5043 MRS6 Vacuolar protein 100.0 1.3E-34 2.8E-39 273.3 15.3 154 1-156 1-154 (2552)
3 KOG1809|consensus 99.9 3.8E-27 8.1E-32 230.6 15.5 150 1-156 1-150 (1827)
4 KOG2955|consensus 99.6 6.4E-15 1.4E-19 132.9 8.3 93 2-94 1-96 (1069)
5 TIGR03545 conserved hypothetic 67.3 21 0.00045 32.7 6.8 81 5-92 28-113 (555)
6 PF05170 AsmA: AsmA family; I 58.3 80 0.0017 28.4 8.9 87 5-99 34-124 (604)
7 PF13345 DUF4098: Domain of un 52.5 25 0.00054 21.9 3.5 24 21-44 2-25 (76)
8 cd06478 ACD_HspB4-5-6 Alpha-cr 46.0 23 0.0005 23.7 2.7 21 19-39 16-36 (83)
9 cd06464 ACD_sHsps-like Alpha-c 42.8 28 0.0006 22.4 2.7 24 19-42 16-39 (88)
10 PRK13991 cell division topolog 35.6 40 0.00086 23.3 2.5 25 10-34 46-70 (87)
11 COG0851 MinE Septum formation 33.7 41 0.00089 23.4 2.3 24 10-34 46-69 (88)
12 PF06115 DUF956: Domain of unk 32.9 25 0.00055 25.7 1.3 17 66-82 46-62 (118)
13 PF05132 RNA_pol_Rpc4: RNA pol 31.4 1.1E+02 0.0023 22.3 4.4 39 55-99 63-101 (131)
14 PRK13605 endoribonuclease SymE 30.3 2.2E+02 0.0047 20.7 5.8 45 75-119 55-104 (113)
15 PF04441 Pox_VERT_large: Poxvi 29.8 2.3E+02 0.0049 26.6 7.0 70 21-93 220-300 (700)
16 PF02287 Dehydratase_SU: Dehyd 24.6 14 0.0003 27.6 -1.3 21 29-49 34-54 (136)
17 PF14980 TIP39: TIP39 peptide 24.2 1.8E+02 0.004 17.9 3.9 18 104-121 20-37 (51)
18 PF09493 DUF2389: Tryptophan-r 23.6 69 0.0015 20.4 1.9 26 51-76 27-52 (60)
19 PF11209 DUF2993: Protein of u 22.4 2.5E+02 0.0054 21.5 5.3 41 51-91 34-81 (225)
No 1
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=100.00 E-value=1.8e-35 Score=215.89 Aligned_cols=117 Identities=49% Similarity=0.790 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHhhhccccCcCCeeeeEecceEEEeccccchhhHhhcCCcEEEEEEEEeEEEEEeeccccCCCcEEEE
Q psy416 2 LERLIAWVLNNYLGKYVENLNTDQLSVALLQGAVELENLPLKKDALRQLGIPIEIKSGFIGKVKLQVPVSQFRSAPWVIC 81 (157)
Q Consensus 2 ~e~~i~~~L~~~Lg~yi~~l~~~ql~~sl~~G~v~L~nl~Lk~~~l~~l~lP~~v~~g~ig~l~i~IPW~~l~s~pv~i~ 81 (157)
||++++++|++|||+|++|++.+|+++|+|+|+++|+||+|++++|+.+++|+.+++|+||+++++|||++|+++|++|+
T Consensus 1 fe~~v~~~L~~~Lg~yi~~l~~~ql~vsl~~G~v~L~nl~l~~~~l~~~~lP~~v~~g~i~~l~i~IPw~~l~~~pv~i~ 80 (118)
T PF12624_consen 1 FESLVSSLLNKYLGRYIENLDKDQLSVSLWNGEVELRNLELKKDALNNLGLPIEVKSGSIGKLRIKIPWTSLWSKPVVIE 80 (118)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHeeeeeccCceEEEccEeeHHHhcCcCCCeEEeEEEeeeEEEEEEhHHhCCCCEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccEEEEeeeCCCCCCCHHH-HHHHHHHHHHHHHHHHH
Q psy416 82 IEQLYVVTGPVSMAQWDEEL-EERAAQEYKIMLLDALE 118 (157)
Q Consensus 82 i~~v~i~~~~~~~~~~d~e~-~~~~~~~~K~~~L~~~E 118 (157)
|+||+++++|.+..+|+.+. +.....++|++.|+++|
T Consensus 81 I~~v~l~~~~~~~~~~~~~~~~~~~~~~~K~~~L~~~e 118 (118)
T PF12624_consen 81 IEDVFLVLKPKDQDEWDNEEFEKSRLKEAKQKQLAQWE 118 (118)
T ss_pred EeeEEEEEEECCccccChHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999998 55667788999999876
No 2
>COG5043 MRS6 Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-34 Score=273.32 Aligned_cols=154 Identities=37% Similarity=0.574 Sum_probs=139.8
Q ss_pred ChHHHHHHHHHHHHhhhccccCcCCeeeeEecceEEEeccccchhhHhhcCCcEEEEEEEEeEEEEEeeccccCCCcEEE
Q psy416 1 MLERLIAWVLNNYLGKYVENLNTDQLSVALLQGAVELENLPLKKDALRQLGIPIEIKSGFIGKVKLQVPVSQFRSAPWVI 80 (157)
Q Consensus 1 M~e~~i~~~L~~~Lg~yi~~l~~~ql~~sl~~G~v~L~nl~Lk~~~l~~l~lP~~v~~g~ig~l~i~IPW~~l~s~pv~i 80 (157)
|+|++++.+|||+||.||||||+.||++++|+|+|.|+||+||++||+.|++|++|++|.||.|++.|||++|.++|++|
T Consensus 1 MLegLlanlLNRlLGsYVENfD~~QLnvgvw~GdVsl~NLriK~saldkL~lpi~V~sgligtLtl~iPWsSLknKPVeI 80 (2552)
T COG5043 1 MLEGLLANLLNRLLGSYVENFDTKQLNVGVWGGDVSLHNLRIKPSALDKLGLPIEVTSGLIGTLTLEIPWSSLKNKPVEI 80 (2552)
T ss_pred ChhHHHHHHHHHHHHHHHhhcCccceeEEEecceeEEEeeeecHHHHhhcCCCeEEeecceeeEEEEeehHHhcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccEEEEeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCcchHHHHHHHhHcCeeee
Q psy416 81 CIEQLYVVTGPVSMAQWDEELEERAAQEYKIMLLDALEARWRAETESACYYSSSYTSWLSYGTSFMTNIVENLQVK 156 (157)
Q Consensus 81 ~i~~v~i~~~~~~~~~~d~e~~~~~~~~~K~~~L~~~E~~~~~~~~~~~~~~~~~~~~~sf~~~Li~~Ii~Nlqv~ 156 (157)
.|+|+++.+.|.....-..++..+++++.|+++++.||.......++.+ .+..+++++|++.|++++|||+||.
T Consensus 81 yIedi~llis~~~~~~~~~ee~p~~~~~lk~rq~~~wE~~~~~~~~sss--s~~~~~~q~F~EsLitk~iDniqi~ 154 (2552)
T COG5043 81 YIEDIYLLISPQAKNSLTREELPQSQQALKQRQLDSWEILRETLEESSS--SPNISRKQSFIESLITKLIDNIQIY 154 (2552)
T ss_pred EEEeeEEEechhhccccccccChHHHHHHHHHHHHHHHHhHHhhhhccc--CccccccchHHHHHHHhcccceEEE
Confidence 9999999999987766666777788999999999999987644333221 2445678999999999999999985
No 3
>KOG1809|consensus
Probab=99.95 E-value=3.8e-27 Score=230.65 Aligned_cols=150 Identities=39% Similarity=0.617 Sum_probs=140.4
Q ss_pred ChHHHHHHHHHHHHhhhccccCcCCeeeeEecceEEEeccccchhhHhhcCCcEEEEEEEEeEEEEEeeccccCCCcEEE
Q psy416 1 MLERLIAWVLNNYLGKYVENLNTDQLSVALLQGAVELENLPLKKDALRQLGIPIEIKSGFIGKVKLQVPVSQFRSAPWVI 80 (157)
Q Consensus 1 M~e~~i~~~L~~~Lg~yi~~l~~~ql~~sl~~G~v~L~nl~Lk~~~l~~l~lP~~v~~g~ig~l~i~IPW~~l~s~pv~i 80 (157)
|||++++.+|+|+||.|++|+|++|+++++|+|+|.|+||+++++||+.|++|+.+..|.+|+++++|||++|.++|+.+
T Consensus 1 mle~~v~~lLnr~LG~yv~nld~~QL~lgIw~GdV~l~nL~ik~~aL~~L~~P~~v~~g~ig~l~L~IPw~sL~~~pv~~ 80 (1827)
T KOG1809|consen 1 MLESLVADLLNRFLGDYVENLDRSQLNLGIWGGDVVLSNLQIKESALSKLDLPFEVKSGLIGTLTLKIPWKSLYNKPVEI 80 (1827)
T ss_pred CcHHHHHHHHHHHhhhcccCCCCCcceEEEecceeEeechhhCHHHHhccCCCeEEeeeeeeeEEEeccchhcccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccEEEEeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCcchHHHHHHHhHcCeeee
Q psy416 81 CIEQLYVVTGPVSMAQWDEELEERAAQEYKIMLLDALEARWRAETESACYYSSSYTSWLSYGTSFMTNIVENLQVK 156 (157)
Q Consensus 81 ~i~~v~i~~~~~~~~~~d~e~~~~~~~~~K~~~L~~~E~~~~~~~~~~~~~~~~~~~~~sf~~~Li~~Ii~Nlqv~ 156 (157)
.++|+++++.|.....|+.+.+....+..|+..++.+|...+...++.. .+.++|+++++++|++|||++
T Consensus 81 ~i~~i~~l~~p~s~~~~~~~~~~~~~~~~k~~~~~~~e~~~~~~~~~~~------~~~~~F~e~lit~ii~nlqv~ 150 (1827)
T KOG1809|consen 81 NIEDIYLLVVPLSNVKYDPESEAKLSFELKTEYLERIEEAKKKRTEPDQ------EKTDTFGESLITQIIFNLQVS 150 (1827)
T ss_pred EEeeeeeEeecccccccCchhhhhHHHHHHHhhhhhHHHHhhhcccccc------cccchHHHHHHHHHHhhccce
Confidence 9999999999999999999999999999999999999987655433321 346789999999999999985
No 4
>KOG2955|consensus
Probab=99.57 E-value=6.4e-15 Score=132.88 Aligned_cols=93 Identities=29% Similarity=0.576 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHhhhccccCcCCeeeeEecceEEEeccccchhhHh-hcCCc--EEEEEEEEeEEEEEeeccccCCCcE
Q psy416 2 LERLIAWVLNNYLGKYVENLNTDQLSVALLQGAVELENLPLKKDALR-QLGIP--IEIKSGFIGKVKLQVPVSQFRSAPW 78 (157)
Q Consensus 2 ~e~~i~~~L~~~Lg~yi~~l~~~ql~~sl~~G~v~L~nl~Lk~~~l~-~l~lP--~~v~~g~ig~l~i~IPW~~l~s~pv 78 (157)
+++++++.|.+.|+.|.+||++||++++.++|+.+|+||+|+.++|. .|+|| +.|+.++||++.|.+||++|.+.|+
T Consensus 1 M~sIIk~ql~khLs~ftKnltpdqi~L~~lKG~~qL~nleineevL~~~L~LP~wL~I~~afc~k~~I~lPwtklkT~PI 80 (1069)
T KOG2955|consen 1 MESIIKRQLEKHLSYFTKNLTPDQIKLQGLKGTAQLSNLEINEEVLHASLGLPPWLSITTAFCGKLEIMLPWTKLKTEPI 80 (1069)
T ss_pred CchHHHHHHHHHHHHHHhcCChhhEeeeeccccceecceecCHHHHHHhhcCCchheeeeeeecceEEeccchhccccce
Confidence 47899999999999999999999999999999999999999999997 68999 9999999999999999999999999
Q ss_pred EEEEccEEEEeeeCCC
Q psy416 79 VICIEQLYVVTGPVSM 94 (157)
Q Consensus 79 ~i~i~~v~i~~~~~~~ 94 (157)
+|.|+.+.+.+..+++
T Consensus 81 ~v~iDkl~l~le~~~e 96 (1069)
T KOG2955|consen 81 VVQIDKLDLVLEENPE 96 (1069)
T ss_pred EEEeeeeeEEeecCcc
Confidence 9999999999988753
No 5
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=67.26 E-value=21 Score=32.70 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhhcc-ccCcCCeeeeEecceEEEeccccc-hhhHhhcCCcEEEEEEEEeEEEEEeeccccCCCcEE---
Q psy416 5 LIAWVLNNYLGKYVE-NLNTDQLSVALLQGAVELENLPLK-KDALRQLGIPIEIKSGFIGKVKLQVPVSQFRSAPWV--- 79 (157)
Q Consensus 5 ~i~~~L~~~Lg~yi~-~l~~~ql~~sl~~G~v~L~nl~Lk-~~~l~~l~lP~~v~~g~ig~l~i~IPW~~l~s~pv~--- 79 (157)
+++..+.+++.+=.. .++-+.++++++.+.++++++.+- ++. |- =..-.++++++.+.|..|.+..+.
T Consensus 28 ~~K~~ie~~~seatGreV~Ig~V~lslfpl~l~i~gl~Vanp~~------~~-~~~~~i~~i~~~v~l~pLL~~~vvI~~ 100 (555)
T TIGR03545 28 LAKKAIERSLEKAFGAKVEIAQVDTGLFPLQLSIQGLQVTDPDK------PM-RNLFEIDRINASLDWDALLRGKVVIEE 100 (555)
T ss_pred HHHHHHHHHHHHHHCCeEEEeEEEeeecCCeEEEeeEEEeCCCC------CC-CCeEEeeEEEEEeccHHHhcCCcEEeE
Confidence 344444444444443 345568999999999999999994 321 11 124689999999999998887664
Q ss_pred EEEccEEEEeeeC
Q psy416 80 ICIEQLYVVTGPV 92 (157)
Q Consensus 80 i~i~~v~i~~~~~ 92 (157)
+.|+++.+.+.-.
T Consensus 101 l~l~g~~v~l~R~ 113 (555)
T TIGR03545 101 LAIEGLAFGTERS 113 (555)
T ss_pred EEEecCEEEEEEc
Confidence 5688888877643
No 6
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=58.33 E-value=80 Score=28.44 Aligned_cols=87 Identities=10% Similarity=0.093 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhhccccCcCCeeeeEecc-eEEEeccccchhhHhhcCCcEEEEEEEEeEEEEEeeccccCCCcE---EE
Q psy416 5 LIAWVLNNYLGKYVENLNTDQLSVALLQG-AVELENLPLKKDALRQLGIPIEIKSGFIGKVKLQVPVSQFRSAPW---VI 80 (157)
Q Consensus 5 ~i~~~L~~~Lg~yi~~l~~~ql~~sl~~G-~v~L~nl~Lk~~~l~~l~lP~~v~~g~ig~l~i~IPW~~l~s~pv---~i 80 (157)
.+...++...|+=+. ++. .++.++|-. .++|+|+.|...-= ..-| ...++++++.+-|..|.+.++ .|
T Consensus 34 ~i~~~v~~~tg~~l~-i~g-~i~~~~~P~~~l~l~~v~l~~~~~--~~~~----~~~~~~~~~~l~~~~Ll~~~~~i~~v 105 (604)
T PF05170_consen 34 QIEQQVSEATGRELT-IDG-DISLSLFPWPGLTLEDVSLSNPEG--FTGP----LLSAESLSVSLSLLPLLSGKIEIDSV 105 (604)
T ss_pred HHHHHHHHHhCCcEE-Ecc-ceeEEECCcceEEEcceEeccCcC--Cccc----eEEeeEEEEEEehHHHcCCCeEEEEE
Confidence 344444445544443 322 246778866 89999999976431 1111 689999999999999988776 56
Q ss_pred EEccEEEEeeeCCCCCCCH
Q psy416 81 CIEQLYVVTGPVSMAQWDE 99 (157)
Q Consensus 81 ~i~~v~i~~~~~~~~~~d~ 99 (157)
.+++..+.+.......++-
T Consensus 106 ~l~~~~l~l~~~~~G~~N~ 124 (604)
T PF05170_consen 106 VLDGPKLNLERDKDGRSNW 124 (604)
T ss_pred EEeCcEEEEEECCCCCccc
Confidence 7899999888866655543
No 7
>PF13345 DUF4098: Domain of unknown function (DUF4098)
Probab=52.52 E-value=25 Score=21.94 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=17.3
Q ss_pred cCcCCeeeeEecceEEEeccccch
Q psy416 21 LNTDQLSVALLQGAVELENLPLKK 44 (157)
Q Consensus 21 l~~~ql~~sl~~G~v~L~nl~Lk~ 44 (157)
+..+++++..-+|.+.+++++.+.
T Consensus 2 v~~~~l~~~~~~G~i~~~~~~~~~ 25 (76)
T PF13345_consen 2 VEADNLNVQTSSGDIKLTNVKADN 25 (76)
T ss_pred cCccEEEEEEeEEEEEECceEece
Confidence 456677777778888887777763
No 8
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=45.99 E-value=23 Score=23.67 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.3
Q ss_pred cccCcCCeeeeEecceEEEec
Q psy416 19 ENLNTDQLSVALLQGAVELEN 39 (157)
Q Consensus 19 ~~l~~~ql~~sl~~G~v~L~n 39 (157)
-|++++++++.+-.|.+.++-
T Consensus 16 pG~~~edI~V~v~~~~L~I~g 36 (83)
T cd06478 16 KHFSPEELSVKVLGDFVEIHG 36 (83)
T ss_pred CCCCHHHeEEEEECCEEEEEE
Confidence 379999999999999888876
No 9
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=42.83 E-value=28 Score=22.39 Aligned_cols=24 Identities=8% Similarity=0.250 Sum_probs=19.5
Q ss_pred cccCcCCeeeeEecceEEEecccc
Q psy416 19 ENLNTDQLSVALLQGAVELENLPL 42 (157)
Q Consensus 19 ~~l~~~ql~~sl~~G~v~L~nl~L 42 (157)
-|++++++++.+-.+.+.++--+-
T Consensus 16 pg~~~~~i~V~v~~~~l~I~g~~~ 39 (88)
T cd06464 16 PGFKKEDIKVEVEDGVLTISGERE 39 (88)
T ss_pred CCCCHHHeEEEEECCEEEEEEEEe
Confidence 478999999999999988875444
No 10
>PRK13991 cell division topological specificity factor MinE; Provisional
Probab=35.57 E-value=40 Score=23.32 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=20.3
Q ss_pred HHHHHhhhccccCcCCeeeeEecce
Q psy416 10 LNNYLGKYVENLNTDQLSVALLQGA 34 (157)
Q Consensus 10 L~~~Lg~yi~~l~~~ql~~sl~~G~ 34 (157)
|-..+.+|++.+|++++++.+-+++
T Consensus 46 il~VIsKYv~~Id~~~i~V~l~~~~ 70 (87)
T PRK13991 46 LAEVIKRYVPAIDAEAIEVTLSRGE 70 (87)
T ss_pred HHHHHHHHhcccCccceEEEEEeCC
Confidence 5567888999899999999886543
No 11
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=33.67 E-value=41 Score=23.39 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=19.7
Q ss_pred HHHHHhhhccccCcCCeeeeEecce
Q psy416 10 LNNYLGKYVENLNTDQLSVALLQGA 34 (157)
Q Consensus 10 L~~~Lg~yi~~l~~~ql~~sl~~G~ 34 (157)
+-..+.+|++ +|++.+++++-+|.
T Consensus 46 Il~VI~KYV~-id~d~v~v~~e~~~ 69 (88)
T COG0851 46 ILEVISKYVQ-IDPDKVEVSLERDD 69 (88)
T ss_pred HHHHHHHHhe-eCcccEEEEEcCCC
Confidence 4567788886 99999999998776
No 12
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=32.89 E-value=25 Score=25.73 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=12.0
Q ss_pred EEeeccccCCCcEEEEE
Q psy416 66 LQVPVSQFRSAPWVICI 82 (157)
Q Consensus 66 i~IPW~~l~s~pv~i~i 82 (157)
|+|||..+..--..|..
T Consensus 46 IQIPW~eI~~V~a~V~f 62 (118)
T PF06115_consen 46 IQIPWEEIDYVIASVSF 62 (118)
T ss_pred EEeChhheeEEEEEEEE
Confidence 78999987655555553
No 13
>PF05132 RNA_pol_Rpc4: RNA polymerase III RPC4; InterPro: IPR007811 This family comprises a specific subunit for Pol III, the tRNA specific polymerase.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006383 transcription from RNA polymerase III promoter, 0005666 DNA-directed RNA polymerase III complex
Probab=31.38 E-value=1.1e+02 Score=22.32 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=31.3
Q ss_pred EEEEEEEeEEEEEeeccccCCCcEEEEEccEEEEeeeCCCCCCCH
Q psy416 55 EIKSGFIGKVKLQVPVSQFRSAPWVICIEQLYVVTGPVSMAQWDE 99 (157)
Q Consensus 55 ~v~~g~ig~l~i~IPW~~l~s~pv~i~i~~v~i~~~~~~~~~~d~ 99 (157)
.+..|+||+|+|. .|.-+.+.+-|+.+-+.+-....|..
T Consensus 63 ~~~~G~iGkL~V~------kSGkv~l~iG~~~~dV~~G~~~~FlQ 101 (131)
T PF05132_consen 63 DLPEGQIGKLRVH------KSGKVTLKIGGVVFDVSPGTQCSFLQ 101 (131)
T ss_pred cCCCCeeEEEEEE------eCCcEEEEECCEEEEecCCCCCCchh
Confidence 3468999999986 57889999999999888876655543
No 14
>PRK13605 endoribonuclease SymE; Provisional
Probab=30.34 E-value=2.2e+02 Score=20.74 Aligned_cols=45 Identities=11% Similarity=0.010 Sum_probs=31.0
Q ss_pred CCcEEEEEccEEEEeeeCCCCCCCHHHHHH-----HHHHHHHHHHHHHHH
Q psy416 75 SAPWVICIEQLYVVTGPVSMAQWDEELEER-----AAQEYKIMLLDALEA 119 (157)
Q Consensus 75 s~pv~i~i~~v~i~~~~~~~~~~d~e~~~~-----~~~~~K~~~L~~~E~ 119 (157)
..|+.|.+++=.|++.+.++..-..|..+. ....+|++.+++|-.
T Consensus 55 G~~V~V~V~~G~LVIt~~~~~~~~~el~~~l~~v~~~s~~kq~q~~~fi~ 104 (113)
T PRK13605 55 GTAVDVRVMEGCIVLTAQPPAAEESELMQSLRQVCKLSARKQKQVQEFIG 104 (113)
T ss_pred CCeEEEEEeCCEEEEEeCCCCcccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 579999999999999998765444443332 234567777766643
No 15
>PF04441 Pox_VERT_large: Poxvirus early transcription factor (VETF), large subunit ; InterPro: IPR007532 The poxvirus early transcription factor (VETF), in addition to the viral RNA polymerase, is required for efficient transcription of early genes in vitro. VETF is a heterodimeric protein that binds specifically to early gene promoters. The heterodimer is comprised of an 82 kDa (this family) subunit and a 70 kDa subunit.; GO: 0045893 positive regulation of transcription, DNA-dependent
Probab=29.83 E-value=2.3e+02 Score=26.55 Aligned_cols=70 Identities=20% Similarity=0.383 Sum_probs=55.5
Q ss_pred cCcCCeeeeEec--c---------eEEEeccccchhhHhhcCCcEEEEEEEEeEEEEEeeccccCCCcEEEEEccEEEEe
Q psy416 21 LNTDQLSVALLQ--G---------AVELENLPLKKDALRQLGIPIEIKSGFIGKVKLQVPVSQFRSAPWVICIEQLYVVT 89 (157)
Q Consensus 21 l~~~ql~~sl~~--G---------~v~L~nl~Lk~~~l~~l~lP~~v~~g~ig~l~i~IPW~~l~s~pv~i~i~~v~i~~ 89 (157)
+..+++++|+|. | .+...||.|=.+.+...+.-.+-..| .++.+|-....-+..+.+.++--++.+
T Consensus 220 l~De~lnLsiwD~d~~laissDg~ti~in~v~lFT~ll~~~diqmerIK~---diTyki~l~TpitS~ikldietsFifv 296 (700)
T PF04441_consen 220 LNDESLNLSIWDDDGSLAISSDGDTITINNVKLFTDLLSDIDIQMERIKG---DITYKIYLSTPITSKIKLDIETSFIFV 296 (700)
T ss_pred EecCceeEEEEcCCCcEEEecCCCEEEEecHHHHHHHhhhhchhheeeec---ceEEEEEecCcccCceEEeEEeeEEEE
Confidence 567899999995 2 46788999999999888777666666 778888877777788899998888877
Q ss_pred eeCC
Q psy416 90 GPVS 93 (157)
Q Consensus 90 ~~~~ 93 (157)
.+..
T Consensus 297 eTaT 300 (700)
T PF04441_consen 297 ETAT 300 (700)
T ss_pred Eecc
Confidence 7754
No 16
>PF02287 Dehydratase_SU: Dehydratase small subunit; InterPro: IPR003207 This family contains the small subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances [, ].; PDB: 1IWP_M 1MMF_M 1UC4_M 1EEX_M 3AUJ_G 1IWB_M 1DIO_G 1UC5_G 1EGM_G 1EGV_M ....
Probab=24.64 E-value=14 Score=27.61 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=16.8
Q ss_pred eEecceEEEeccccchhhHhh
Q psy416 29 ALLQGAVELENLPLKKDALRQ 49 (157)
Q Consensus 29 sl~~G~v~L~nl~Lk~~~l~~ 49 (157)
.+.+|+|..+|+++.++.|..
T Consensus 34 ~V~~G~v~~~DlRItpetL~~ 54 (136)
T PF02287_consen 34 NVLSGKVTAEDLRITPETLEM 54 (136)
T ss_dssp HHHTTSS-CCCSSB-HHHHHH
T ss_pred HHHcCCCCHHHhccCHHHHHH
Confidence 578999999999999999864
No 17
>PF14980 TIP39: TIP39 peptide
Probab=24.25 E-value=1.8e+02 Score=17.92 Aligned_cols=18 Identities=33% Similarity=0.261 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy416 104 RAAQEYKIMLLDALEARW 121 (157)
Q Consensus 104 ~~~~~~K~~~L~~~E~~~ 121 (157)
...++.|-+.|.+.|.+.
T Consensus 20 DaAFrerarLl~amER~~ 37 (51)
T PF14980_consen 20 DAAFRERARLLTAMERQK 37 (51)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 356777888999999764
No 18
>PF09493 DUF2389: Tryptophan-rich protein (DUF2389); InterPro: IPR012663 Members of this family are small hypothetical proteins of 60 to 100 residues from Cyanobacteria and some Proteobacteria. Prochlorococcus marinus strains have two members, other species one only. Interestingly, of the eight most conserved residues, four are aromatic and three are invariant tryptophans. It appears all species that encode this protein can synthesize tryptophan de novo.
Probab=23.56 E-value=69 Score=20.40 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=21.4
Q ss_pred CCcEEEEEEEEeEEEEEeeccccCCC
Q psy416 51 GIPIEIKSGFIGKVKLQVPVSQFRSA 76 (157)
Q Consensus 51 ~lP~~v~~g~ig~l~i~IPW~~l~s~ 76 (157)
+..+.+..+...+.++.|||..|.+.
T Consensus 27 ~~~v~~~~av~~~~~~~i~w~~Lkd~ 52 (60)
T PF09493_consen 27 GRVVELVEAVDSKRRFWINWRELKDR 52 (60)
T ss_pred CeEEEeEeeeccCcEEEEeHHHhCCc
Confidence 34577888999999999999988754
No 19
>PF11209 DUF2993: Protein of unknown function (DUF2993); InterPro: IPR021373 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.39 E-value=2.5e+02 Score=21.50 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=30.4
Q ss_pred CCcE--EEEEEEEeEEEEEee---c--cccCCCcEEEEEccEEEEeee
Q psy416 51 GIPI--EIKSGFIGKVKLQVP---V--SQFRSAPWVICIEQLYVVTGP 91 (157)
Q Consensus 51 ~lP~--~v~~g~ig~l~i~IP---W--~~l~s~pv~i~i~~v~i~~~~ 91 (157)
+.|| .+..|.+.++.+..| + ..+.-..+.++++||.+-...
T Consensus 34 g~P~l~qll~G~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 81 (225)
T PF11209_consen 34 GFPFLTQLLGGRLDSVTVDAPGVTVDGQGLRIAEVTVTAEDVRLDPSD 81 (225)
T ss_pred CcCcHHHHhCCEeCeEEEEeCCcEEeccCcceeEEEEEEEEEEEcchh
Confidence 3784 888999999999866 4 334445778888888887664
Done!