Query psy416
Match_columns 157
No_of_seqs 143 out of 579
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 18:25:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aab_A Putative uncharacterize 30.2 15 0.0005 25.2 0.7 22 20-41 44-66 (123)
2 4gns_A Chitin biosynthesis pro 20.5 6.2 0.00021 30.2 -3.0 62 33-94 95-174 (290)
3 2kxo_A Cell division topologic 18.6 1.1E+02 0.0036 20.5 3.2 24 9-33 46-69 (95)
4 2klr_A Alpha-crystallin B chai 18.2 48 0.0017 24.4 1.6 66 20-93 83-150 (175)
5 1iwp_G Glycerol dehydratase ga 16.1 13 0.00043 27.0 -2.0 21 29-49 36-56 (141)
6 3r9j_C MINE, cell division top 15.2 34 0.0012 22.1 0.1 23 10-33 35-57 (77)
7 3h8k_B Autocrine motility fact 13.7 1.6E+02 0.0056 15.2 4.4 24 97-120 1-24 (28)
8 3q9p_A Heat shock protein beta 13.1 1.4E+02 0.0047 18.8 2.6 23 19-41 16-38 (85)
9 1k5j_A Nucleoplasmin core; bet 12.5 1.3E+02 0.0044 21.1 2.4 51 32-84 42-93 (124)
10 1imu_A Hypothetical protein HI 12.4 2E+02 0.0068 18.9 3.3 28 2-30 16-43 (107)
No 1
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=30.19 E-value=15 Score=25.25 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=18.4
Q ss_pred ccCcCCeeeeEec-ceEEEeccc
Q psy416 20 NLNTDQLSVALLQ-GAVELENLP 41 (157)
Q Consensus 20 ~l~~~ql~~sl~~-G~v~L~nl~ 41 (157)
|++++++++++-+ |.+.++.-+
T Consensus 44 G~~~edi~V~v~~~~~L~I~g~~ 66 (123)
T 3aab_A 44 GFNKEKIKARVSGQNELIIEAER 66 (123)
T ss_dssp SCCGGGCEEEEETTTEEEEEEEC
T ss_pred CCCHHHEEEEEeCCCEEEEEEEE
Confidence 7889999999988 888887654
No 2
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=20.51 E-value=6.2 Score=30.22 Aligned_cols=62 Identities=21% Similarity=0.431 Sum_probs=47.2
Q ss_pred ceEEEeccccchhhHhhcCCc--EEEEEEEEeEEEEEeecc----------ccCCCcEEEE------EccEEEEeeeCCC
Q psy416 33 GAVELENLPLKKDALRQLGIP--IEIKSGFIGKVKLQVPVS----------QFRSAPWVIC------IEQLYVVTGPVSM 94 (157)
Q Consensus 33 G~v~L~nl~Lk~~~l~~l~lP--~~v~~g~ig~l~i~IPW~----------~l~s~pv~i~------i~~v~i~~~~~~~ 94 (157)
|...|+.|-|-..-+.++-+| |.++...|..+++.-|+. .||++.+.+. ++++.+++.|.++
T Consensus 95 gsaklkslilyrkgirsmvipnpfkvtttkisglsvdtpyefqlklittsgtlwsekvilrthkmtdmsgitvclgpldp 174 (290)
T 4gns_A 95 GSAKLKSLILYRKGIRSMVIPNPFKVTTTKISGLSVDTPYEFQLKLITTSGTLWSEKVILRTHKMTDMSGITVCLGPLDP 174 (290)
T ss_dssp SSSCEEEEEEESSSTTSCBCSCTTTCCEEEECSCCTTCEEEEEEEEEETTEEEEEEEEEEECCCTTCCTTCCEEECCCCG
T ss_pred chHHhhhhhhhhhcceeeecCCCeeEEEEEecceecCCcceeEEEEEeccCceehhheeeeecccccccCceEEecCCCh
Confidence 778888888888888876555 999999999888777763 3556665553 6788899998765
No 3
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=18.58 E-value=1.1e+02 Score=20.46 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=18.8
Q ss_pred HHHHHHhhhccccCcCCeeeeEecc
Q psy416 9 VLNNYLGKYVENLNTDQLSVALLQG 33 (157)
Q Consensus 9 ~L~~~Lg~yi~~l~~~ql~~sl~~G 33 (157)
=|-.++++|++ +|.+++++++-++
T Consensus 46 eIl~VIsKYv~-Id~~~v~V~l~~~ 69 (95)
T 2kxo_A 46 ALMEVLSKYVN-VSLDNIRISQEKQ 69 (95)
T ss_dssp HHHHHHHHHSC-CCTTSEEEEEEEE
T ss_pred HHHHHHHHhee-cchhheEEEEEeC
Confidence 35567888997 8999999988653
No 4
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=18.23 E-value=48 Score=24.37 Aligned_cols=66 Identities=18% Similarity=0.397 Sum_probs=37.0
Q ss_pred ccCcCCeeeeEecceEEEeccccchhhHhhcCCcEEEEEEEEeEEEEEeeccccCCCcEEEEE--ccEEEEeeeCC
Q psy416 20 NLNTDQLSVALLQGAVELENLPLKKDALRQLGIPIEIKSGFIGKVKLQVPVSQFRSAPWVICI--EQLYVVTGPVS 93 (157)
Q Consensus 20 ~l~~~ql~~sl~~G~v~L~nl~Lk~~~l~~l~lP~~v~~g~ig~l~i~IPW~~l~s~pv~i~i--~~v~i~~~~~~ 93 (157)
|+++++++|.+-.|.+.++.-+=... +.-+ + +..-+-. ++.+| .....+.+.-.. +||.-+--|+.
T Consensus 83 G~~~edI~V~v~~~~L~I~g~~~~~~--~~~~--~-~~reF~R--~~~LP-~~Vd~~~i~A~~s~dGvL~I~lPK~ 150 (175)
T 2klr_A 83 HFSPEELKVKVLGDVIEVHGKHEERQ--DEHG--F-ISREFHR--KYRIP-ADVDPLTITSSLSSDGVLTVNGPRK 150 (175)
T ss_dssp SCCGGGEEEEEETTEEEEEEEEEEEE--ETTE--E-EEEEEEE--EEECT-TTCCTTTCEEEECTTSCEEEEEECC
T ss_pred CCChHHEEEEEECCEEEEEEEEcccc--cCCc--e-EEEEEEE--EEECC-CCcChhHeEEEEcCCCEEEEEEECC
Confidence 68889999999888888876431110 1110 0 1111111 23344 235556677777 67777777764
No 5
>1iwp_G Glycerol dehydratase gamma subunit; cobalamin, radical catalysis, lyase; HET: B12; 2.10A {Klebsiella pneumoniae} SCOP: a.23.2.1 PDB: 1mmf_G*
Probab=16.13 E-value=13 Score=26.98 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=18.4
Q ss_pred eEecceEEEeccccchhhHhh
Q psy416 29 ALLQGAVELENLPLKKDALRQ 49 (157)
Q Consensus 29 sl~~G~v~L~nl~Lk~~~l~~ 49 (157)
.+.+|+|..+|+++.++.|..
T Consensus 36 ~V~~G~v~~~DlRIspetL~~ 56 (141)
T 1iwp_G 36 KVLSGEVGPQDVRISRQTLEY 56 (141)
T ss_dssp HHHHTSSCGGGSSCCHHHHHH
T ss_pred HHHcCCCCHHHhccCHHHHHH
Confidence 578999999999999998863
No 6
>3r9j_C MINE, cell division topological specificity factor; ATPase, protein complex, bacterial cell division inhibitor; HET: ADP; 4.30A {Escherichia coli} PDB: 1ev0_A
Probab=15.21 E-value=34 Score=22.08 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=18.4
Q ss_pred HHHHHhhhccccCcCCeeeeEecc
Q psy416 10 LNNYLGKYVENLNTDQLSVALLQG 33 (157)
Q Consensus 10 L~~~Lg~yi~~l~~~ql~~sl~~G 33 (157)
|-..+++|++ ++.+++++++-++
T Consensus 35 Il~VIsKYv~-Id~~~v~v~l~~~ 57 (77)
T 3r9j_C 35 ILEVICKYVQ-IDPEMVTVQLEQK 57 (77)
T ss_dssp HTTGGGTTSC-CCCSCCCCEEEEE
T ss_pred HHHHHHhhee-cCcccEEEEEEEc
Confidence 4467889997 8999999988654
No 7
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=13.71 E-value=1.6e+02 Score=15.19 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q psy416 97 WDEELEERAAQEYKIMLLDALEAR 120 (157)
Q Consensus 97 ~d~e~~~~~~~~~K~~~L~~~E~~ 120 (157)
|.+++.....++.|...+.+....
T Consensus 1 ~s~~eRq~~Lq~Rk~~mi~~ARrr 24 (28)
T 3h8k_B 1 WSADERQRMLVQRKDELLQQARKR 24 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 667776666777777777665443
No 8
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=13.10 E-value=1.4e+02 Score=18.75 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=19.6
Q ss_pred cccCcCCeeeeEecceEEEeccc
Q psy416 19 ENLNTDQLSVALLQGAVELENLP 41 (157)
Q Consensus 19 ~~l~~~ql~~sl~~G~v~L~nl~ 41 (157)
-|++++++++.+-.|.+.++--+
T Consensus 16 PG~~~edi~V~v~~~~L~I~g~~ 38 (85)
T 3q9p_A 16 NHFAPDELTVKTKDGVVEITGKH 38 (85)
T ss_dssp TTTCCSEEEEEEETTEEEEEEEE
T ss_pred CCCChHHEEEEEECCEEEEEEEE
Confidence 37999999999999999887653
No 9
>1k5j_A Nucleoplasmin core; beta-barrel, jellyroll, beta-bulge, pentamer, chaperone; 2.30A {Xenopus laevis} SCOP: b.121.3.1 PDB: 2vtx_A 2vtx_J
Probab=12.48 E-value=1.3e+02 Score=21.13 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=30.3
Q ss_pred cceEEEeccccchhhHhhcCCcEEEEEEEEeEEEEEeeccccCC-CcEEEEEcc
Q psy416 32 QGAVELENLPLKKDALRQLGIPIEIKSGFIGKVKLQVPVSQFRS-APWVICIEQ 84 (157)
Q Consensus 32 ~G~v~L~nl~Lk~~~l~~l~lP~~v~~g~ig~l~i~IPW~~l~s-~pv~i~i~~ 84 (157)
.+.+.|+.+-|-..|=+.+++ +++..++-|+ .+++|+..|.- -.-.+.+.|
T Consensus 42 eh~L~L~~~~LG~~AKdE~nV-VEve~n~~g~-~ikv~latLk~s~~p~vsl~g 93 (124)
T 1k5j_A 42 EHQLALRTVCLGDKAKDEFHI-VEIVTQEEGA-EKSVPIATLKPSILPMATMVG 93 (124)
T ss_dssp CCEEEEEEEEECTTSCSSCEE-EEEEECCC----EEEEEEEEBTTTBCEEECCS
T ss_pred ccEEEEEEEEcCCCcCCcceE-EEEEeCCCCC-ccEEEEEEEcccccccEEeCC
Confidence 566888888888877665543 5555534354 68888887762 233444444
No 10
>1imu_A Hypothetical protein HI0257; dsRNA binding protein, proteome, solution structure, ribosome, structure 2 function project, S2F; NMR {Haemophilus influenzae} SCOP: d.204.1.1
Probab=12.37 E-value=2e+02 Score=18.91 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHhhhccccCcCCeeeeE
Q psy416 2 LERLIAWVLNNYLGKYVENLNTDQLSVAL 30 (157)
Q Consensus 2 ~e~~i~~~L~~~Lg~yi~~l~~~ql~~sl 30 (157)
++.++..-|.+ |.+|++.+..-++.++.
T Consensus 16 lr~~v~~kl~k-L~r~~~~i~~~~V~l~~ 43 (107)
T 1imu_A 16 IREHLEERLAK-LGKWQTQLISPHFVLNK 43 (107)
T ss_dssp HHHHHHHHHHH-HHTSSCCCSSCEEEEEE
T ss_pred HHHHHHHHHHH-HHHhcCCCcEEEEEEEE
Confidence 45677888888 89999877655555554
Done!