Query psy416
Match_columns 157
No_of_seqs 143 out of 579
Neff 6.8
Searched_HMMs 13730
Date Fri Aug 16 18:25:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy416.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/416hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ev0a_ d.71.1.1 (A:) Cell div 31.4 9 0.00065 22.2 1.3 21 10-31 16-36 (58)
2 d1hl9a1 b.71.1.3 (A:357-448) P 22.0 13 0.00093 22.5 0.8 53 33-85 38-91 (92)
3 d2qswa1 d.58.18.13 (A:256-345) 16.6 91 0.0066 18.4 4.1 20 45-64 32-51 (90)
4 d3ceda1 d.58.18.13 (A:247-341) 16.2 72 0.0052 19.2 3.6 19 46-64 37-55 (95)
5 d2qrra1 d.58.18.13 (A:2-98) Me 16.1 1E+02 0.0075 18.4 4.4 21 45-65 38-58 (97)
6 d1iwpg_ a.23.2.1 (G:) Diol deh 15.1 6.7 0.00049 26.6 -2.0 21 29-49 33-53 (138)
7 d1eexg_ a.23.2.1 (G:) Diol deh 14.6 6.6 0.00048 26.6 -2.1 21 29-49 32-52 (137)
8 d2dyja1 d.52.7.1 (A:4-94) Ribo 12.6 61 0.0044 19.5 2.4 34 6-45 5-38 (91)
9 d2fm8a1 d.198.1.1 (A:1-134) Su 10.3 1.8E+02 0.013 18.9 4.4 38 10-48 73-110 (134)
10 d1je5a_ b.40.4.7 (A:) gp2.5 {B 10.1 69 0.0051 22.1 2.2 49 41-89 124-179 (197)
No 1
>d1ev0a_ d.71.1.1 (A:) Cell division protein MinE topological specificity domain {Escherichia coli [TaxId: 562]}
Probab=31.38 E-value=9 Score=22.19 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=17.1
Q ss_pred HHHHHhhhccccCcCCeeeeEe
Q psy416 10 LNNYLGKYVENLNTDQLSVALL 31 (157)
Q Consensus 10 L~~~Lg~yi~~l~~~ql~~sl~ 31 (157)
|-..+.+|++ ++.+++++++=
T Consensus 16 il~VI~KyV~-Id~d~v~V~le 36 (58)
T d1ev0a_ 16 ILEVICKYVQ-IDPEMVTVQLE 36 (58)
T ss_dssp HHHHHHHHSC-CCGGGEEEEEE
T ss_pred HHHHHHHhEe-ecHHHeEEEEe
Confidence 4467788886 99999999985
No 2
>d1hl9a1 b.71.1.3 (A:357-448) Putative alpha-L-fucosidase C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=22.01 E-value=13 Score=22.48 Aligned_cols=53 Identities=17% Similarity=0.330 Sum_probs=38.8
Q ss_pred ceEEEeccccchhhHhhcCCcEEEEEEEEeE-EEEEeeccccCCCcEEEEEccE
Q psy416 33 GAVELENLPLKKDALRQLGIPIEIKSGFIGK-VKLQVPVSQFRSAPWVICIEQL 85 (157)
Q Consensus 33 G~v~L~nl~Lk~~~l~~l~lP~~v~~g~ig~-l~i~IPW~~l~s~pv~i~i~~v 85 (157)
-++.++||.|.......+--.=++.+-.+|+ +.|.+|=+-|.++++.+.++-|
T Consensus 38 ekiviedlnlsagtvrhfltgerlsfknvgknleitvpkklletdsitlvleav 91 (92)
T d1hl9a1 38 EKIVIEDLNLSAGTVRHFLTGERLSFKNVGKNLEITVPKKLLETDSITLVLEAV 91 (92)
T ss_dssp SEEEETTCCCCSSEEEETTTCCEEEEEEETTEEEEECCHHHHTTCSSSCEEEEE
T ss_pred CEEEEEEcccccceeeeeeccceeeecccCCceEEecchHHhccccEEEEEEec
Confidence 3678888888877776553445666677775 8999998888888877666543
No 3
>d2qswa1 d.58.18.13 (A:256-345) Methionine import ATP-binding protein MetN2 {Enterococcus faecalis [TaxId: 1351]}
Probab=16.56 E-value=91 Score=18.45 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=15.5
Q ss_pred hhHhhcCCcEEEEEEEEeEE
Q psy416 45 DALRQLGIPIEIKSGFIGKV 64 (157)
Q Consensus 45 ~~l~~l~lP~~v~~g~ig~l 64 (157)
+....+++++.|.+|.|..+
T Consensus 32 ~l~r~~~i~vnIL~g~i~~i 51 (90)
T d2qswa1 32 HIVQEYQVEVSIIQGNIQQT 51 (90)
T ss_dssp HHHHHHTCEEEEEEEEEEEE
T ss_pred HHHHHhCCcEEEEEEEeEEe
Confidence 34457899999999988653
No 4
>d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding protein MetN2 {Staphylococcus aureus [TaxId: 1280]}
Probab=16.24 E-value=72 Score=19.18 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=15.0
Q ss_pred hHhhcCCcEEEEEEEEeEE
Q psy416 46 ALRQLGIPIEIKSGFIGKV 64 (157)
Q Consensus 46 ~l~~l~lP~~v~~g~ig~l 64 (157)
+...+++.+.|.+|.|..+
T Consensus 37 l~r~~~v~vnIL~g~I~~i 55 (95)
T d3ceda1 37 LSTAYDIKINILEANIKNT 55 (95)
T ss_dssp HHHHHTCCCEEEEEEEEEE
T ss_pred HHHHhCCceEEEEEEeEEe
Confidence 3456899999999999653
No 5
>d2qrra1 d.58.18.13 (A:2-98) Methionine import ATP-binding protein MetN {Vibrio parahaemolyticus [TaxId: 670]}
Probab=16.08 E-value=1e+02 Score=18.41 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=16.7
Q ss_pred hhHhhcCCcEEEEEEEEeEEE
Q psy416 45 DALRQLGIPIEIKSGFIGKVK 65 (157)
Q Consensus 45 ~~l~~l~lP~~v~~g~ig~l~ 65 (157)
++...+++++.|.+|.|..+.
T Consensus 38 ~l~~~~~i~vnIL~g~i~~i~ 58 (97)
T d2qrra1 38 QISRKYNIDVSILSSDLDYAG 58 (97)
T ss_dssp HHHHHSCCEEEEEEEEEEEET
T ss_pred HHHHHHCCCeEEEEEeeEEeC
Confidence 345678999999999997743
No 6
>d1iwpg_ a.23.2.1 (G:) Diol dehydratase, gamma subunit {Klebsiella pneumoniae [TaxId: 573]}
Probab=15.08 E-value=6.7 Score=26.62 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=18.5
Q ss_pred eEecceEEEeccccchhhHhh
Q psy416 29 ALLQGAVELENLPLKKDALRQ 49 (157)
Q Consensus 29 sl~~G~v~L~nl~Lk~~~l~~ 49 (157)
.+.+|+|.++|+++.+++|..
T Consensus 33 ~V~~G~v~~~DlRItpetL~~ 53 (138)
T d1iwpg_ 33 KVLSGEVGPQDVRISRQTLEY 53 (138)
T ss_dssp HHHHTSSCGGGSSCCHHHHHH
T ss_pred HHHcCCCCHHHhccCHHHHHH
Confidence 578999999999999998863
No 7
>d1eexg_ a.23.2.1 (G:) Diol dehydratase, gamma subunit {Klebsiella oxytoca [TaxId: 571]}
Probab=14.61 E-value=6.6 Score=26.61 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=18.4
Q ss_pred eEecceEEEeccccchhhHhh
Q psy416 29 ALLQGAVELENLPLKKDALRQ 49 (157)
Q Consensus 29 sl~~G~v~L~nl~Lk~~~l~~ 49 (157)
.+.+|+|.++|+++.+++|..
T Consensus 32 ~V~~G~v~~~DlRItpetL~~ 52 (137)
T d1eexg_ 32 NVLSNKVTAQDMRITPETLRL 52 (137)
T ss_dssp HHHTTSSCTTTCCCCHHHHHH
T ss_pred HHHcCCCCHHHhccCHHHHHH
Confidence 578999999999999998863
No 8
>d2dyja1 d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA {Thermus thermophilus [TaxId: 274]}
Probab=12.62 E-value=61 Score=19.45 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhhccccCcCCeeeeEecceEEEeccccchh
Q psy416 6 IAWVLNNYLGKYVENLNTDQLSVALLQGAVELENLPLKKD 45 (157)
Q Consensus 6 i~~~L~~~Lg~yi~~l~~~ql~~sl~~G~v~L~nl~Lk~~ 45 (157)
++..|.+.++..+..+....+ |-+.++++++.+|
T Consensus 5 le~~i~r~is~il~~~~d~~~------~~vtIt~V~~S~D 38 (91)
T d2dyja1 5 LEAQLKRALAEEIQALEDPRL------FLLTVEAVRLSKD 38 (91)
T ss_dssp HHHHHHHHHHHHHHTCCCGGG------TTCEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHccCccc------CceEEEEEEECCC
Confidence 455566666666655544432 3456666666654
No 9
>d2fm8a1 d.198.1.1 (A:1-134) Surface presentation of antigens protein SpaK (Spa15) {Salmonella typhimurium [TaxId: 90371]}
Probab=10.34 E-value=1.8e+02 Score=18.86 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=29.4
Q ss_pred HHHHHhhhccccCcCCeeeeEecceEEEeccccchhhHh
Q psy416 10 LNNYLGKYVENLNTDQLSVALLQGAVELENLPLKKDALR 48 (157)
Q Consensus 10 L~~~Lg~yi~~l~~~ql~~sl~~G~v~L~nl~Lk~~~l~ 48 (157)
|-.+|-+|...+...|+.++.-.|.++|+- .+++++|+
T Consensus 73 lL~~l~~~~~~f~~gqp~L~~~d~~L~L~a-~v~p~~L~ 110 (134)
T d2fm8a1 73 ILMTIMEGCHFARGGQLLLGEQNGELTLKA-LVHPDFLS 110 (134)
T ss_dssp HHHHHHTCCTTBGGGSCEEEEETTEEEEEE-EBCGGGSS
T ss_pred HHHHHHhCCCccccCceeeEecCCeEEEEE-EEchhhhc
Confidence 344455788899999999999999999985 46666554
No 10
>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
Probab=10.07 E-value=69 Score=22.10 Aligned_cols=49 Identities=20% Similarity=0.159 Sum_probs=35.0
Q ss_pred ccchhhHhhcCCc----EEEEEEEEeEEEEEe-ecc--ccCCCcEEEEEccEEEEe
Q psy416 41 PLKKDALRQLGIP----IEIKSGFIGKVKLQV-PVS--QFRSAPWVICIEQLYVVT 89 (157)
Q Consensus 41 ~Lk~~~l~~l~lP----~~v~~g~ig~l~i~I-PW~--~l~s~pv~i~i~~v~i~~ 89 (157)
..++..++.-+-| ..|-.|+.+++.+.+ ||. .-...-|.+.+..|.++=
T Consensus 124 ~~~P~i~Ds~~~~l~~~~~i~~Gs~~~v~~~~~py~~~~~~g~Gvsl~L~~VQvi~ 179 (197)
T d1je5a_ 124 HINLVVVDSKGKKMEDVPIIGGGSKLKVKYSLVPYKWNTAVGASVKLQLESVMLVE 179 (197)
T ss_dssp ECCCCEECTTSCBCSSCCCCCTTCEEEEEEEEEEECCCSSCCBEEEEEEEEEEEEE
T ss_pred ccCCeEECCCCCCCCCCcccccCcEEEEEEEEeeeeeCCCCceEEEEEeeeEEEEE
Confidence 3456666654333 468899999999875 874 344467999999999864
Done!