RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy416
         (157 letters)



>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
          synthase {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 427

 Score = 32.5 bits (73), Expect = 0.016
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 11/65 (16%)

Query: 29 ALLQGAVELENLPLKKD------ALRQLGIPIEIKSGFI-----GKVKLQVPVSQFRSAP 77
          +L +G  ++ ++   +D        R LG+ IE K G I     G   L+ P +      
Sbjct: 31 SLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITVQGVGMAGLKAPQNALNMGN 90

Query: 78 WVICI 82
              I
Sbjct: 91 SGTSI 95


>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
          synthase {Escherichia coli [TaxId: 562]}
          Length = 427

 Score = 30.3 bits (67), Expect = 0.076
 Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 6/35 (17%)

Query: 29 ALLQGAVELENLPLKKD------ALRQLGIPIEIK 57
          AL  G   L NL    D      AL  LG+   + 
Sbjct: 33 ALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLS 67


>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
           synthase {Escherichia coli [TaxId: 562]}
          Length = 216

 Score = 30.0 bits (66), Expect = 0.094
 Identities = 18/131 (13%), Positives = 31/131 (23%), Gaps = 8/131 (6%)

Query: 29  ALLQGAVELENLPLKKD------ALRQLGIPIEIKSGFIGKVKLQVPVS--QFRSAPWVI 80
           AL  G   L NL    D      AL  LG+   + +       +          +    +
Sbjct: 9   ALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFL 68

Query: 81  CIEQLYVVTGPVSMAQWDEELEERAAQEYKIMLLDALEARWRAETESACYYSSSYTSWLS 140
                 +     ++     ++        K   +  L    R       Y        L 
Sbjct: 69  GNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLR 128

Query: 141 YGTSFMTNIVE 151
               F    V+
Sbjct: 129 LQGGFTGGNVD 139


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 593,794
Number of extensions: 25881
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 5
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)