Query psy4160
Match_columns 160
No_of_seqs 135 out of 167
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 18:26:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02966 DIM1: Mitosis protein 100.0 1.8E-71 3.8E-76 434.4 9.8 123 32-154 4-133 (133)
2 KOG3414|consensus 100.0 5.2E-71 1.1E-75 433.4 11.1 128 33-160 8-142 (142)
3 PLN00410 U5 snRNP protein, DIM 100.0 3.3E-46 7.1E-51 292.4 10.5 119 42-160 24-142 (142)
4 cd02986 DLP Dim1 family, Dim1- 100.0 8.2E-46 1.8E-50 282.5 9.5 101 40-141 13-114 (114)
5 cd02954 DIM1 Dim1 family; Dim1 99.9 1.2E-23 2.6E-28 159.8 9.1 99 43-141 16-114 (114)
6 KOG3555|consensus 99.4 9.1E-14 2E-18 124.6 2.3 57 3-80 280-338 (434)
7 cd00252 SPARC_EC SPARC_EC; ext 99.1 6.8E-11 1.5E-15 90.0 2.2 41 1-42 76-116 (116)
8 cd02984 TRX_PICOT TRX domain, 98.2 5.5E-06 1.2E-10 56.9 6.0 65 42-106 15-79 (97)
9 PF00085 Thioredoxin: Thioredo 98.1 2.9E-05 6.2E-10 52.9 7.5 84 42-135 18-101 (103)
10 cd02965 HyaE HyaE family; HyaE 97.7 4.1E-05 9E-10 58.3 4.2 65 42-106 28-94 (111)
11 PRK10996 thioredoxin 2; Provis 97.6 0.00034 7.3E-09 53.2 7.6 85 43-137 54-138 (139)
12 cd02989 Phd_like_TxnDC9 Phosdu 97.6 0.00011 2.3E-09 54.3 4.4 66 42-108 23-88 (113)
13 cd02975 PfPDO_like_N Pyrococcu 97.5 0.00043 9.4E-09 50.9 6.8 86 44-140 25-112 (113)
14 cd02947 TRX_family TRX family; 97.5 0.00055 1.2E-08 44.3 6.3 64 42-106 11-74 (93)
15 TIGR01295 PedC_BrcD bacterioci 97.4 0.00044 9.6E-09 52.1 6.2 79 45-134 27-120 (122)
16 cd03001 PDI_a_P5 PDIa family, 97.3 0.00056 1.2E-08 47.1 5.4 69 44-112 21-89 (103)
17 cd03004 PDI_a_ERdj5_C PDIa fam 97.2 0.00091 2E-08 46.8 5.2 63 43-105 21-83 (104)
18 cd02956 ybbN ybbN protein fami 97.1 0.0009 1.9E-08 46.1 4.7 61 43-103 14-74 (96)
19 cd02957 Phd_like Phosducin (Ph 97.1 0.0009 2E-08 48.5 5.0 65 42-108 25-89 (113)
20 PF13202 EF-hand_5: EF hand; P 97.1 0.0003 6.6E-09 40.5 1.7 23 7-29 1-23 (25)
21 cd02963 TRX_DnaJ TRX domain, D 97.1 0.0013 2.7E-08 47.9 5.0 72 44-117 27-99 (111)
22 TIGR01126 pdi_dom protein disu 97.1 0.00096 2.1E-08 45.4 4.2 62 44-105 16-79 (102)
23 cd03002 PDI_a_MPD1_like PDI fa 97.0 0.00098 2.1E-08 46.6 4.2 63 44-106 21-85 (109)
24 KOG4578|consensus 97.0 0.00026 5.7E-09 64.2 1.4 32 5-36 370-401 (421)
25 TIGR01068 thioredoxin thioredo 97.0 0.0022 4.8E-08 43.3 5.5 83 43-135 16-98 (101)
26 cd02961 PDI_a_family Protein D 97.0 0.002 4.3E-08 42.8 4.9 63 43-106 17-81 (101)
27 cd02985 TRX_CDSP32 TRX family, 97.0 0.0014 3E-08 46.9 4.4 64 43-108 17-83 (103)
28 cd02996 PDI_a_ERp44 PDIa famil 96.9 0.0024 5.1E-08 45.4 5.6 73 44-117 21-99 (108)
29 cd02962 TMX2 TMX2 family; comp 96.9 0.0031 6.7E-08 49.8 6.7 66 44-109 50-122 (152)
30 cd02951 SoxW SoxW family; SoxW 96.9 0.0048 1E-07 44.9 7.0 93 43-144 16-125 (125)
31 PRK09381 trxA thioredoxin; Pro 96.8 0.01 2.3E-07 41.9 8.0 70 42-112 22-91 (109)
32 cd02949 TRX_NTR TRX domain, no 96.8 0.004 8.7E-08 43.6 5.8 82 43-134 15-96 (97)
33 PTZ00051 thioredoxin; Provisio 96.8 0.0038 8.2E-08 43.0 5.5 62 43-106 20-81 (98)
34 cd02982 PDI_b'_family Protein 96.8 0.004 8.8E-08 43.1 5.6 61 44-104 15-77 (103)
35 cd03003 PDI_a_ERdj5_N PDIa fam 96.8 0.0033 7.2E-08 44.0 5.2 61 43-103 20-80 (101)
36 cd02993 PDI_a_APS_reductase PD 96.7 0.0082 1.8E-07 43.1 6.6 63 43-105 23-88 (109)
37 cd03000 PDI_a_TMX3 PDIa family 96.6 0.0088 1.9E-07 42.3 6.5 64 42-106 16-82 (104)
38 cd03005 PDI_a_ERp46 PDIa famil 96.6 0.0071 1.5E-07 41.5 5.6 63 43-106 18-83 (102)
39 cd02995 PDI_a_PDI_a'_C PDIa fa 96.6 0.0064 1.4E-07 41.6 5.3 72 43-115 20-93 (104)
40 cd02948 TRX_NDPK TRX domain, T 96.5 0.0048 1E-07 44.0 4.7 62 43-106 19-81 (102)
41 cd02994 PDI_a_TMX PDIa family, 96.5 0.0071 1.5E-07 42.1 5.3 63 43-106 18-81 (101)
42 cd02987 Phd_like_Phd Phosducin 96.5 0.0055 1.2E-07 48.9 5.1 64 43-108 85-148 (175)
43 PHA02278 thioredoxin-like prot 96.5 0.0048 1E-07 45.4 4.4 74 40-115 13-90 (103)
44 cd02999 PDI_a_ERp44_like PDIa 96.3 0.0067 1.5E-07 43.6 4.2 61 44-106 21-82 (100)
45 PTZ00443 Thioredoxin domain-co 96.2 0.026 5.7E-07 47.3 8.0 91 43-143 54-144 (224)
46 cd02997 PDI_a_PDIR PDIa family 96.2 0.017 3.6E-07 39.7 5.7 64 43-107 19-86 (104)
47 cd02953 DsbDgamma DsbD gamma f 96.2 0.0099 2.1E-07 41.8 4.4 59 44-102 14-79 (104)
48 cd03065 PDI_b_Calsequestrin_N 96.1 0.019 4E-07 43.9 6.2 84 43-137 29-118 (120)
49 cd02950 TxlA TRX-like protein 96.1 0.033 7.1E-07 42.6 7.5 90 43-141 22-113 (142)
50 PF13405 EF-hand_6: EF-hand do 96.0 0.0045 9.9E-08 36.2 1.8 24 8-31 3-26 (31)
51 cd02998 PDI_a_ERp38 PDIa famil 96.0 0.018 3.9E-07 39.3 5.0 63 43-105 20-85 (105)
52 cd03006 PDI_a_EFP1_N PDIa fami 95.9 0.023 5.1E-07 42.5 5.7 69 43-112 31-100 (113)
53 COG0526 TrxA Thiol-disulfide i 95.7 0.027 5.7E-07 36.4 4.5 65 43-107 34-101 (127)
54 KOG0910|consensus 95.6 0.04 8.7E-07 44.6 6.3 85 42-136 62-146 (150)
55 cd02955 SSP411 TRX domain, SSP 95.5 0.069 1.5E-06 40.8 6.9 89 44-137 18-118 (124)
56 TIGR00424 APS_reduc 5'-adenyly 95.5 0.043 9.3E-07 50.8 6.8 72 44-115 374-448 (463)
57 PF00036 EF-hand_1: EF hand; 95.3 0.013 2.9E-07 34.7 1.9 24 8-31 3-26 (29)
58 TIGR02187 GlrX_arch Glutaredox 95.1 0.12 2.7E-06 41.6 7.7 83 48-139 26-112 (215)
59 cd02952 TRP14_like Human TRX-r 95.1 0.052 1.1E-06 41.5 5.2 60 43-102 23-97 (119)
60 cd02992 PDI_a_QSOX PDIa family 94.9 0.045 9.8E-07 40.1 4.3 63 43-105 21-88 (114)
61 cd02988 Phd_like_VIAF Phosduci 94.8 0.046 1E-06 44.5 4.5 60 43-106 104-163 (192)
62 PTZ00062 glutaredoxin; Provisi 94.7 0.09 1.9E-06 43.7 6.1 59 42-111 18-76 (204)
63 PLN02309 5'-adenylylsulfate re 94.2 0.16 3.4E-06 47.0 7.0 61 44-104 368-431 (457)
64 cd02973 TRX_GRX_like Thioredox 94.1 0.12 2.6E-06 33.6 4.4 61 45-108 3-63 (67)
65 cd02959 ERp19 Endoplasmic reti 93.9 0.095 2.1E-06 39.0 4.1 59 44-102 22-83 (117)
66 TIGR00411 redox_disulf_1 small 93.5 0.18 4E-06 33.3 4.6 78 45-136 3-80 (82)
67 TIGR01130 ER_PDI_fam protein d 93.5 0.2 4.3E-06 42.9 5.9 64 44-107 21-87 (462)
68 PF13833 EF-hand_8: EF-hand do 93.2 0.07 1.5E-06 33.8 2.0 25 7-31 27-51 (54)
69 PF13499 EF-hand_7: EF-hand do 93.1 0.11 2.4E-06 33.7 3.1 25 7-31 2-26 (66)
70 smart00054 EFh EF-hand, calciu 93.0 0.1 2.2E-06 26.8 2.3 24 8-31 3-26 (29)
71 TIGR02187 GlrX_arch Glutaredox 92.7 0.34 7.4E-06 39.0 5.9 78 45-136 137-214 (215)
72 PRK11509 hydrogenase-1 operon 92.7 0.56 1.2E-05 36.9 6.9 75 54-138 49-124 (132)
73 KOG0907|consensus 92.2 0.26 5.6E-06 36.9 4.3 65 43-109 23-87 (106)
74 PF13499 EF-hand_7: EF-hand do 92.2 0.11 2.4E-06 33.7 2.1 26 5-30 40-65 (66)
75 TIGR01130 ER_PDI_fam protein d 90.5 1.3 2.7E-05 38.0 7.3 57 44-102 367-426 (462)
76 PTZ00102 disulphide isomerase; 89.2 1.1 2.4E-05 39.2 6.0 86 44-138 378-465 (477)
77 PRK00293 dipZ thiol:disulfide 89.0 0.93 2E-05 42.5 5.8 85 44-137 477-569 (571)
78 cd00052 EH Eps15 homology doma 88.6 0.62 1.3E-05 29.7 3.2 24 8-31 2-25 (67)
79 PTZ00102 disulphide isomerase; 88.2 1.1 2.3E-05 39.2 5.3 66 43-108 51-119 (477)
80 TIGR02740 TraF-like TraF-like 88.1 2.1 4.5E-05 36.6 6.9 38 44-83 169-206 (271)
81 cd00051 EFh EF-hand, calcium b 87.4 0.55 1.2E-05 27.8 2.2 23 8-30 39-61 (63)
82 COG3118 Thioredoxin domain-con 86.4 1.2 2.6E-05 39.9 4.6 65 44-108 46-110 (304)
83 cd02958 UAS UAS family; UAS is 85.8 4.4 9.5E-05 29.1 6.6 84 45-137 21-110 (114)
84 PHA02125 thioredoxin-like prot 85.4 1.1 2.4E-05 30.4 3.1 50 45-100 2-51 (75)
85 PF13899 Thioredoxin_7: Thiore 84.1 1.4 3.1E-05 30.0 3.3 42 45-86 21-65 (82)
86 cd01659 TRX_superfamily Thiore 83.9 3.4 7.5E-05 23.4 4.4 43 46-89 2-44 (69)
87 smart00027 EH Eps15 homology d 79.8 2.3 5E-05 30.1 3.1 25 7-31 12-36 (96)
88 cd00052 EH Eps15 homology doma 79.7 1.4 3.1E-05 27.9 1.9 25 7-31 35-59 (67)
89 cd03011 TlpA_like_ScsD_MtbDsbE 74.4 6.7 0.00015 27.7 4.3 29 43-71 22-50 (123)
90 KOG0911|consensus 74.0 2.1 4.5E-05 37.0 1.8 65 40-106 16-81 (227)
91 cd05026 S-100Z S-100Z: S-100Z 71.9 3 6.5E-05 29.9 2.0 26 5-30 53-78 (93)
92 PRK03147 thiol-disulfide oxido 71.7 28 0.0006 26.0 7.3 39 44-82 64-103 (173)
93 cd03009 TryX_like_TryX_NRX Try 71.7 8.8 0.00019 27.7 4.5 40 43-83 20-63 (131)
94 PTZ00183 centrin; Provisional 69.3 4.3 9.2E-05 29.6 2.4 25 8-32 20-44 (158)
95 TIGR00412 redox_disulf_2 small 68.5 26 0.00056 23.8 6.0 57 47-108 4-60 (76)
96 COG1274 PckA Phosphoenolpyruva 67.3 4.1 8.9E-05 39.3 2.4 38 110-153 95-132 (608)
97 PRK14018 trifunctional thiored 66.5 10 0.00023 35.9 4.8 35 44-78 59-95 (521)
98 PF12763 EF-hand_4: Cytoskelet 66.4 3.2 7E-05 31.1 1.2 32 9-40 47-78 (104)
99 KOG1955|consensus 64.7 3.9 8.5E-05 39.8 1.7 24 11-34 271-294 (737)
100 cd05023 S-100A11 S-100A11: S-1 64.6 6.1 0.00013 28.4 2.3 24 7-30 54-77 (89)
101 cd05031 S-100A10_like S-100A10 64.4 6 0.00013 27.9 2.3 27 5-31 51-77 (94)
102 PF14788 EF-hand_10: EF hand; 63.7 4.4 9.6E-05 27.6 1.4 24 6-29 22-45 (51)
103 cd05025 S-100A1 S-100A1: S-100 62.8 6.7 0.00014 27.5 2.2 27 4-30 51-77 (92)
104 cd02966 TlpA_like_family TlpA- 61.3 29 0.00064 22.7 5.1 41 44-84 22-63 (116)
105 KOG0027|consensus 61.2 14 0.00031 28.0 4.0 25 7-31 10-34 (151)
106 cd07034 TPP_PYR_PFOR_IOR-alpha 60.3 12 0.00025 28.3 3.3 33 115-148 122-154 (160)
107 TIGR00385 dsbE periplasmic pro 59.9 42 0.00092 25.9 6.5 36 43-81 65-100 (173)
108 cd05027 S-100B S-100B: S-100B 59.8 8 0.00017 27.7 2.2 24 7-30 53-76 (88)
109 PF02114 Phosducin: Phosducin; 59.4 17 0.00038 31.3 4.6 61 44-109 149-211 (265)
110 cd05030 calgranulins Calgranul 58.3 8.3 0.00018 27.3 2.1 28 4-31 50-77 (88)
111 cd02967 mauD Methylamine utili 58.1 8.2 0.00018 26.9 2.0 52 43-94 23-77 (114)
112 cd03026 AhpF_NTD_C TRX-GRX-lik 57.5 17 0.00036 25.9 3.6 59 45-106 16-74 (89)
113 PRK04210 phosphoenolpyruvate c 57.4 9.6 0.00021 37.1 2.9 38 110-153 88-125 (601)
114 PTZ00183 centrin; Provisional 57.3 13 0.00028 27.1 3.0 22 9-30 94-115 (158)
115 TIGR02180 GRX_euk Glutaredoxin 56.2 19 0.00042 23.6 3.5 36 45-82 1-36 (84)
116 cd03010 TlpA_like_DsbE TlpA-li 55.8 32 0.0007 24.5 4.9 26 44-69 28-53 (127)
117 cd02964 TryX_like_family Trypa 55.3 29 0.00064 25.3 4.7 42 43-84 19-63 (132)
118 PTZ00184 calmodulin; Provision 55.1 11 0.00024 26.9 2.3 25 7-31 13-37 (149)
119 cd03008 TryX_like_RdCVF Trypar 54.0 11 0.00024 29.7 2.3 60 10-82 2-74 (146)
120 cd05795 Ribosomal_P0_L10e Ribo 52.1 22 0.00047 28.5 3.8 78 61-140 5-101 (175)
121 cd05031 S-100A10_like S-100A10 50.3 12 0.00027 26.3 1.9 24 8-31 11-36 (94)
122 KOG0036|consensus 49.8 10 0.00022 35.8 1.8 83 7-113 84-168 (463)
123 cd03007 PDI_a_ERp29_N PDIa fam 49.2 24 0.00053 27.0 3.5 72 30-103 3-88 (116)
124 cd00213 S-100 S-100: S-100 dom 49.1 15 0.00033 25.1 2.2 25 7-31 53-77 (88)
125 cd05022 S-100A13 S-100A13: S-1 48.3 16 0.00034 26.5 2.2 24 7-30 49-72 (89)
126 cd05796 Ribosomal_P0_like Ribo 48.2 31 0.00068 27.3 4.1 79 61-141 5-103 (163)
127 cd05024 S-100A10 S-100A10: A s 47.8 16 0.00036 27.2 2.3 24 7-30 50-73 (91)
128 cd02960 AGR Anterior Gradient 47.4 1.1E+02 0.0025 23.8 7.1 84 45-132 27-117 (130)
129 PF13905 Thioredoxin_8: Thiore 47.4 27 0.00059 23.5 3.2 47 45-92 5-55 (95)
130 cd00819 PEPCK_GTP Phosphoenolp 46.7 17 0.00038 35.2 2.8 37 111-153 75-111 (579)
131 KOG0191|consensus 46.4 27 0.00058 30.6 3.8 73 41-114 47-119 (383)
132 PF13192 Thioredoxin_3: Thiore 45.9 85 0.0018 21.2 5.5 71 48-135 6-76 (76)
133 PTZ00184 calmodulin; Provision 43.1 20 0.00042 25.5 2.0 26 6-31 85-110 (149)
134 cd00252 SPARC_EC SPARC_EC; ext 42.1 15 0.00032 28.0 1.3 21 10-30 53-73 (116)
135 PF11399 DUF3192: Protein of u 41.8 17 0.00037 27.9 1.6 29 83-111 45-73 (102)
136 TIGR02738 TrbB type-F conjugat 40.4 1.8E+02 0.0039 22.8 7.6 37 45-83 54-90 (153)
137 KOG0027|consensus 38.9 27 0.00058 26.5 2.3 30 7-36 46-75 (151)
138 cd02066 GRX_family Glutaredoxi 36.8 42 0.00091 20.6 2.6 43 45-93 2-45 (72)
139 TIGR02200 GlrX_actino Glutared 35.8 32 0.00069 22.0 2.0 39 46-90 3-41 (77)
140 KOG4122|consensus 35.5 34 0.00073 22.3 2.0 28 132-159 9-36 (38)
141 TIGR03143 AhpF_homolog putativ 34.5 2.4E+02 0.0052 26.2 8.1 91 47-147 372-463 (555)
142 PHA02152 hypothetical protein 34.1 28 0.0006 26.5 1.7 47 94-144 2-48 (96)
143 PF01581 FARP: FMRFamide relat 33.8 16 0.00034 17.6 0.2 7 44-50 5-11 (11)
144 KOG4251|consensus 33.7 19 0.00042 32.5 0.9 25 7-31 142-166 (362)
145 PRK15412 thiol:disulfide inter 33.6 1.7E+02 0.0037 22.9 6.2 35 44-81 71-105 (185)
146 cd05029 S-100A6 S-100A6: S-100 33.5 37 0.00081 24.2 2.2 24 7-30 53-76 (88)
147 KOG4233|consensus 33.5 22 0.00047 26.9 1.0 8 24-31 82-89 (90)
148 cd02976 NrdH NrdH-redoxin (Nrd 33.4 90 0.002 19.2 3.8 34 47-86 4-37 (73)
149 KOG0377|consensus 32.8 24 0.00053 34.1 1.5 22 10-31 469-490 (631)
150 KOG1672|consensus 32.3 73 0.0016 27.5 4.1 62 43-106 86-148 (211)
151 PRK12309 transaldolase/EF-hand 31.9 31 0.00066 31.6 1.9 21 8-28 337-357 (391)
152 smart00027 EH Eps15 homology d 31.7 33 0.00072 24.1 1.7 27 5-31 44-70 (96)
153 PF14479 HeLo: Prion-inhibitio 31.0 37 0.0008 26.8 2.0 24 114-137 146-169 (212)
154 cd07038 TPP_PYR_PDC_IPDC_like 29.8 62 0.0013 25.2 3.1 31 118-148 126-156 (162)
155 PRK11200 grxA glutaredoxin 1; 28.6 1.1E+02 0.0024 20.7 3.8 60 46-108 4-69 (85)
156 COG0028 IlvB Thiamine pyrophos 28.2 64 0.0014 30.5 3.4 38 117-154 122-162 (550)
157 TIGR03610 RutC pyrimidine util 27.4 31 0.00068 26.1 1.0 20 74-93 76-95 (127)
158 PRK13728 conjugal transfer pro 26.9 79 0.0017 26.1 3.3 37 45-83 73-109 (181)
159 cd06155 eu_AANH_C_1 A group of 26.6 33 0.00071 24.6 1.0 20 74-93 52-71 (101)
160 PF05972 APC_15aa: APC 15 resi 26.5 26 0.00055 19.0 0.3 10 150-159 4-13 (16)
161 TIGR01626 ytfJ_HI0045 conserve 26.5 58 0.0013 26.8 2.5 57 19-83 44-104 (184)
162 PF00821 PEPCK: Phosphoenolpyr 26.1 27 0.00058 34.0 0.5 36 111-152 75-110 (586)
163 COG0338 Dam Site-specific DNA 26.0 1.4E+02 0.0031 26.1 4.9 93 48-153 133-230 (274)
164 PRK00099 rplJ 50S ribosomal pr 25.3 1.7E+02 0.0037 23.0 4.9 77 61-139 8-99 (172)
165 TIGR02196 GlrX_YruB Glutaredox 25.3 1.4E+02 0.0031 18.3 3.7 46 48-99 5-54 (74)
166 cd07035 TPP_PYR_POX_like Pyrim 24.9 1E+02 0.0022 23.0 3.4 31 118-148 118-149 (155)
167 KOG3048|consensus 24.5 39 0.00084 27.8 1.1 21 93-116 73-93 (153)
168 PTZ00135 60S acidic ribosomal 24.3 1.1E+02 0.0025 27.0 4.0 91 61-153 12-120 (310)
169 PRK00831 rpmJ 50S ribosomal pr 24.2 53 0.0011 21.6 1.5 18 142-159 22-39 (41)
170 cd06150 YjgF_YER057c_UK114_lik 24.0 40 0.00088 24.2 1.0 39 55-93 27-74 (105)
171 PF05768 DUF836: Glutaredoxin- 23.7 61 0.0013 22.3 1.8 50 46-97 3-52 (81)
172 cd02983 P5_C P5 family, C-term 23.6 3.3E+02 0.0071 20.6 6.8 83 52-144 34-121 (130)
173 PF01320 Colicin_Pyocin: Colic 23.2 63 0.0014 24.0 1.9 17 125-141 10-26 (85)
174 PF00707 IF3_C: Translation in 23.1 97 0.0021 22.1 2.8 32 43-75 36-68 (88)
175 cd02969 PRX_like1 Peroxiredoxi 22.9 3.4E+02 0.0074 20.5 7.9 41 43-83 27-68 (171)
176 PF06713 bPH_4: Bacterial PH d 22.8 1.5E+02 0.0033 20.4 3.7 31 104-136 42-72 (74)
177 PF01042 Ribonuc_L-PSP: Endori 21.8 58 0.0012 23.8 1.5 20 74-93 69-88 (121)
178 KOG0044|consensus 21.8 62 0.0013 27.0 1.8 23 7-29 66-88 (193)
179 PLN02919 haloacid dehalogenase 20.9 3E+02 0.0065 28.2 6.7 36 43-78 422-459 (1057)
180 PF00404 Dockerin_1: Dockerin 20.8 56 0.0012 18.4 1.0 13 15-27 1-13 (21)
181 PF10413 Rhodopsin_N: Amino te 20.7 25 0.00055 22.6 -0.5 12 145-156 16-27 (36)
182 KOG0034|consensus 20.5 1.5E+02 0.0032 24.5 3.8 42 11-69 110-151 (187)
183 cd01234 PH_CADPS CADPS (Ca2+-d 20.3 1.9E+02 0.0041 22.9 4.1 55 77-141 55-110 (117)
No 1
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=100.00 E-value=1.8e-71 Score=434.39 Aligned_cols=123 Identities=77% Similarity=1.330 Sum_probs=108.6
Q ss_pred cCChhhHHhhh-------hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeee
Q psy4160 32 ELNEDEIEDQC-------EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFR 104 (160)
Q Consensus 32 ~L~e~~~d~rc-------~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfr 104 (160)
+|+++|..++. .+||||||+|||+||+|||+|+++|++|||||+||+||+++||+||+||||+||||||||||
T Consensus 4 ~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~dP~tvmFF~r 83 (133)
T PF02966_consen 4 HLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELYDPCTVMFFFR 83 (133)
T ss_dssp EE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS-SSEEEEEEET
T ss_pred ccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccCCCeEEEEEec
Confidence 46666555532 34899999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEecCCCCCceeeeecCChhHHHHHHHHHhhccccCCeeEECCCCc
Q psy4160 105 NKHIMIDLGTGNNNKINWALEDKQEMIDIVETVYRGARKGRGLVVSPKDY 154 (160)
Q Consensus 105 nkHm~vD~GTgnnnKin~~~~~kqe~iDiie~iyrga~kGk~iv~sP~dy 154 (160)
|||||||+||||||||||++++|||||||||+|||||+||||||+||+||
T Consensus 84 nkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iyrga~kGk~iv~sP~dy 133 (133)
T PF02966_consen 84 NKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIYRGARKGKGIVVSPKDY 133 (133)
T ss_dssp TEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHHHHHHTT-SEEE-SS-G
T ss_pred CeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHHHHhhcCCeeEeCCCCC
Confidence 99999999999999999999999999999999999999999999999998
No 2
>KOG3414|consensus
Probab=100.00 E-value=5.2e-71 Score=433.43 Aligned_cols=128 Identities=75% Similarity=1.193 Sum_probs=121.1
Q ss_pred CChhhHHhhh-------hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeC
Q psy4160 33 LNEDEIEDQC-------EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRN 105 (160)
Q Consensus 33 L~e~~~d~rc-------~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrn 105 (160)
|+.+|..++. .+||||||+|||.||+|||+|+|||++|||||+|||||++|||+|++||||++|+|+||||||
T Consensus 8 L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 8 LHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred cccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence 5555554432 349999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEecCCCCCceeeeecCChhHHHHHHHHHhhccccCCeeEECCCCcccccCC
Q psy4160 106 KHIMIDLGTGNNNKINWALEDKQEMIDIVETVYRGARKGRGLVVSPKDYSTKYRY 160 (160)
Q Consensus 106 kHm~vD~GTgnnnKin~~~~~kqe~iDiie~iyrga~kGk~iv~sP~dy~~~~~~ 160 (160)
||||||+||||||||||++++|||||||||+|||||+||||||+||+||+++|+|
T Consensus 88 kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga~KGKgiV~sP~dy~~~y~~ 142 (142)
T KOG3414|consen 88 KHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGARKGKGIVQSPKDYSTLYRY 142 (142)
T ss_pred ceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhhhcCCeEEECCcchHhhccC
Confidence 9999999999999999999999999999999999999999999999999999986
No 3
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=100.00 E-value=3.3e-46 Score=292.38 Aligned_cols=119 Identities=87% Similarity=1.420 Sum_probs=116.4
Q ss_pred hhhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCCCceee
Q psy4160 42 CEDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKIN 121 (160)
Q Consensus 42 c~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnnnKin 121 (160)
..+|||||++|+++|++||++|.++|+++++++.||.||+|++|+++++|++.+|+|+||||||.||+||.|||||||||
T Consensus 24 ~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~~~k~~ 103 (142)
T PLN00410 24 RLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKIN 103 (142)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCeEEEEEecccccccc
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhccccCCeeEECCCCcccccCC
Q psy4160 122 WALEDKQEMIDIVETVYRGARKGRGLVVSPKDYSTKYRY 160 (160)
Q Consensus 122 ~~~~~kqe~iDiie~iyrga~kGk~iv~sP~dy~~~~~~ 160 (160)
|++.+||+|+|++|++||||+||||||+||+||||++||
T Consensus 104 ~~~~~k~~l~~~i~~~~~~a~~g~~~~~~~~~~~~~~~~ 142 (142)
T PLN00410 104 WALKDKQEFIDIVETVYRGARKGRGLVISPKDYSTKYRY 142 (142)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCeEEECCCcccccccC
Confidence 999999999999999999999999999999999999987
No 4
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=100.00 E-value=8.2e-46 Score=282.51 Aligned_cols=101 Identities=36% Similarity=0.741 Sum_probs=97.5
Q ss_pred hhhhhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCcccccccccccc-ccceeeeeeeCceeEEecCCCCCc
Q psy4160 40 DQCEDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELY-DPCTCMFFFRNKHIMIDLGTGNNN 118 (160)
Q Consensus 40 ~rc~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~-dP~tvmFFfrnkHm~vD~GTgnnn 118 (160)
+...+|||||++|+++|++||++|+++|++++++|++|.||++|||+++++|+|. .|.++ ||+||||||||+||||||
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfv-ffkngkh~~~d~gt~~~~ 91 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTI-FFFNGQHMKVDYGSPDHT 91 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEE-EEECCcEEEEecCCCCCc
Confidence 3567799999999999999999999999999999999999999999999999997 89987 999999999999999999
Q ss_pred eeeeecCChhHHHHHHHHHhhcc
Q psy4160 119 KINWALEDKQEMIDIVETVYRGA 141 (160)
Q Consensus 119 Kin~~~~~kqe~iDiie~iyrga 141 (160)
||||++++|||||||||+|||||
T Consensus 92 k~~~~~~~k~~~idi~e~~yr~a 114 (114)
T cd02986 92 KFVGSFKTKQDFIDLIEVIYRGA 114 (114)
T ss_pred EEEEEcCchhHHHHHHHHHHcCC
Confidence 99999999999999999999997
No 5
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.90 E-value=1.2e-23 Score=159.77 Aligned_cols=99 Identities=80% Similarity=1.323 Sum_probs=95.7
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCCCceeee
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINW 122 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnnnKin~ 122 (160)
.+|++|+-+|-++|.+|+.+|.++|++.++.+.+|-||+++.|+..+.|++..-+|+|||-+++++..+.|+|||+||+|
T Consensus 16 ~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~~~~~~~~~ 95 (114)
T cd02954 16 VVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLGTGNNNKINW 95 (114)
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcCCCCCceEEE
Confidence 46999999999999999999999999999888999999999999999999988889999999999999999999999999
Q ss_pred ecCChhHHHHHHHHHhhcc
Q psy4160 123 ALEDKQEMIDIVETVYRGA 141 (160)
Q Consensus 123 ~~~~kqe~iDiie~iyrga 141 (160)
+++|||+||||||.+||||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~ 114 (114)
T cd02954 96 VFEDKQEFIDIIETIYRGA 114 (114)
T ss_pred ecCcHHHHHHHHHHHhcCC
Confidence 9999999999999999986
No 6
>KOG3555|consensus
Probab=99.40 E-value=9.1e-14 Score=124.57 Aligned_cols=57 Identities=33% Similarity=0.669 Sum_probs=52.5
Q ss_pred cccchhHHhhccCCCCCCcccHHHHHHhhcCChhhHHhhhhhhhhccCCCChhhhhhHHHHHHHHHh--hhcceEEEEEe
Q psy4160 3 LEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIEDQCEDVIRFGHDWDPTCMKMDEVLYSIAEK--VKNFAVIYLVD 80 (160)
Q Consensus 3 ~E~C~~~Ff~~CD~~~D~~is~~EW~~C~~L~e~~~d~rc~~viRFGrd~dp~Cm~mDevL~kia~k--vknfavIYlvD 80 (160)
||.||+|||++||+++||.||++|||+| |.+.. |+|.. +|.+||.. .|+++++|+=+
T Consensus 280 nE~CikpFfnsCD~~kDg~iS~~EWC~C-----------------F~k~~-~pc~~---e~~riqk~~~~k~llG~fiP~ 338 (434)
T KOG3555|consen 280 NEACIKPFFNSCDTYKDGSISTNEWCYC-----------------FQKSD-PPCQA---ELCRIQKHDVDKKLLGAFIPR 338 (434)
T ss_pred chhHHHHHHhhhcccccCccccchhhhh-----------------hccCC-Ccccc---HHHHHHhhhccchhcccccCC
Confidence 8999999999999999999999999999 89886 99998 99999884 89999999643
No 7
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.05 E-value=6.8e-11 Score=89.97 Aligned_cols=41 Identities=44% Similarity=1.027 Sum_probs=37.0
Q ss_pred CCcccchhHHhhccCCCCCCcccHHHHHHhhcCChhhHHhhh
Q psy4160 1 MALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIEDQC 42 (160)
Q Consensus 1 ~~~E~C~~~Ff~~CD~~~D~~is~~EW~~C~~L~e~~~d~rc 42 (160)
+|.|+|+++||++||+|+||.||..|||.|| ++++++.++|
T Consensus 76 ~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl-~~~~~~~~~~ 116 (116)
T cd00252 76 DPNEHCIKPFFESCDLDKDGSISLDEWCYCF-IKEDDLCEAC 116 (116)
T ss_pred cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH-hChhhccccC
Confidence 4789999999999999999999999999999 8888877653
No 8
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.17 E-value=5.5e-06 Score=56.94 Aligned_cols=65 Identities=18% Similarity=0.389 Sum_probs=56.6
Q ss_pred hhhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCc
Q psy4160 42 CEDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNK 106 (160)
Q Consensus 42 c~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnk 106 (160)
..++|.|+.+|-+.|.+|+..|.+++++...-..++-+|.++.|+..+.|.+...+|++||-+++
T Consensus 15 ~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 15 KLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred CEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 45689999999999999999999999986556778899999999999999998888887776554
No 9
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.05 E-value=2.9e-05 Score=52.92 Aligned_cols=84 Identities=23% Similarity=0.377 Sum_probs=66.3
Q ss_pred hhhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCCCceee
Q psy4160 42 CEDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKIN 121 (160)
Q Consensus 42 c~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnnnKin 121 (160)
...||-|+.+|-+.|..+-..|.+++++.++-..++.||.++-+++.+-|.+...+|++||-+++.+. .++
T Consensus 18 ~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~---------~~~ 88 (103)
T PF00085_consen 18 KPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVK---------RYN 88 (103)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEE---------EEE
T ss_pred CCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEEE---------EEE
Confidence 45589999999999999999999999998866788999999999999999999988986665444443 233
Q ss_pred eecCChhHHHHHHH
Q psy4160 122 WALEDKQEMIDIVE 135 (160)
Q Consensus 122 ~~~~~kqe~iDiie 135 (160)
+. .+++++++.|+
T Consensus 89 g~-~~~~~l~~~i~ 101 (103)
T PF00085_consen 89 GP-RNAESLIEFIE 101 (103)
T ss_dssp SS-SSHHHHHHHHH
T ss_pred CC-CCHHHHHHHHH
Confidence 33 34566666554
No 10
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.72 E-value=4.1e-05 Score=58.34 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=58.2
Q ss_pred hhhhhhccCCC--ChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCc
Q psy4160 42 CEDVIRFGHDW--DPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNK 106 (160)
Q Consensus 42 c~~viRFGrd~--dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnk 106 (160)
...|+.|+.+| -|+|..|.-+|.++|++..+-..+|.||+++-|....-|.+..-+|+|||-+++
T Consensus 28 ~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk 94 (111)
T cd02965 28 GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGR 94 (111)
T ss_pred CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCE
Confidence 45599999996 999999999999999998888889999999999999999998777988886665
No 11
>PRK10996 thioredoxin 2; Provisional
Probab=97.60 E-value=0.00034 Score=53.21 Aligned_cols=85 Identities=18% Similarity=0.282 Sum_probs=65.5
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCCCceeee
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINW 122 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnnnKin~ 122 (160)
.++|.|+.+|-++|.+|..+|..++.+.+.-..++-+|+++.|++.+-|.+...+|++|| ++..+ ++. +++
T Consensus 54 ~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~-~~G~~-v~~-------~~G 124 (139)
T PRK10996 54 PVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIF-KNGQV-VDM-------LNG 124 (139)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEE-ECCEE-EEE-------EcC
Confidence 458999999999999999999999998776677788999999999999999887786555 55443 332 222
Q ss_pred ecCChhHHHHHHHHH
Q psy4160 123 ALEDKQEMIDIVETV 137 (160)
Q Consensus 123 ~~~~kqe~iDiie~i 137 (160)
. .++++|.+.++.+
T Consensus 125 ~-~~~e~l~~~l~~~ 138 (139)
T PRK10996 125 A-VPKAPFDSWLNEA 138 (139)
T ss_pred C-CCHHHHHHHHHHh
Confidence 2 3457777777654
No 12
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.58 E-value=0.00011 Score=54.29 Aligned_cols=66 Identities=23% Similarity=0.171 Sum_probs=57.3
Q ss_pred hhhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCcee
Q psy4160 42 CEDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHI 108 (160)
Q Consensus 42 c~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm 108 (160)
..+|+-|..+|-++|..|+.+|..++++..+ ..+|-||+++.|+..+-|.+..=+|++||.+++=+
T Consensus 23 ~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v 88 (113)
T cd02989 23 ERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTV 88 (113)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEE
Confidence 4568999999999999999999999988766 57899999999999998999776788888877633
No 13
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.50 E-value=0.00043 Score=50.92 Aligned_cols=86 Identities=15% Similarity=0.195 Sum_probs=66.2
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCCCc--eee
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNN--KIN 121 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnnn--Kin 121 (160)
.|+-|+.+|-|+|..|-.+|.+++.+- .-..++.+|+++.|+...-|.+.-=+|+++| ++- |... ++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~-~~g--------~~~~~~~~~ 94 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFL-QDG--------GKDGGIRYY 94 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEE-eCC--------eecceEEEE
Confidence 478899999999999999999999864 4467899999999999999999655576444 321 2222 344
Q ss_pred eecCChhHHHHHHHHHhhc
Q psy4160 122 WALEDKQEMIDIVETVYRG 140 (160)
Q Consensus 122 ~~~~~kqe~iDiie~iyrg 140 (160)
+ +.++.||.++|+.||..
T Consensus 95 G-~~~~~el~~~i~~i~~~ 112 (113)
T cd02975 95 G-LPAGYEFASLIEDIVRV 112 (113)
T ss_pred e-cCchHHHHHHHHHHHhc
Confidence 4 66778999999999863
No 14
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.47 E-value=0.00055 Score=44.33 Aligned_cols=64 Identities=25% Similarity=0.363 Sum_probs=53.5
Q ss_pred hhhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCc
Q psy4160 42 CEDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNK 106 (160)
Q Consensus 42 c~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnk 106 (160)
...+|.|+.+|-+.|.++.+.|.+++.+ .+-..++.+|.++.+++.+-|.+...+|+.+|-+++
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCE
Confidence 3458999999999999999999999987 666778999999999999999997666665555555
No 15
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.43 E-value=0.00044 Score=52.05 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=56.7
Q ss_pred hhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCcc-----------ccccccccc----cccceeeeeeeCceeE
Q psy4160 45 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKV-----------PDFNKMYEL----YDPCTCMFFFRNKHIM 109 (160)
Q Consensus 45 viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~V-----------pdfn~myeL----~dP~tvmFFfrnkHm~ 109 (160)
++-||++|=|.|..|.-+|.+++++ .+ ..+|-||+++- ++|-+-|.+ .-.+|+++|=++|.+.
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~-~~-~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~ 104 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQ-TK-APIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQVS 104 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHh-cC-CcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEEE
Confidence 8999999999999999999999997 22 56999999843 344454543 3378888777777665
Q ss_pred EecCCCCCceeeeecCChhHHHHHH
Q psy4160 110 IDLGTGNNNKINWALEDKQEMIDIV 134 (160)
Q Consensus 110 vD~GTgnnnKin~~~~~kqe~iDii 134 (160)
.=.|. ..+++++.++.
T Consensus 105 ~~~G~---------~~~~~~l~~~~ 120 (122)
T TIGR01295 105 VRCGS---------STTAQELQDIA 120 (122)
T ss_pred EEeCC---------CCCHHHHHHHh
Confidence 43332 44567766654
No 16
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.34 E-value=0.00056 Score=47.11 Aligned_cols=69 Identities=17% Similarity=0.171 Sum_probs=58.4
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCceeEEec
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDL 112 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~ 112 (160)
++|-|+.+|-+.|.++-..+.+++++.+.-..++.+|.++-++..+-|.+...+|+++|-++++...++
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~ 89 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNSPQDY 89 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCcceeec
Confidence 688999999999999999999999988777888899999999999999998888876665454555554
No 17
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.19 E-value=0.00091 Score=46.81 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=54.6
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeC
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRN 105 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrn 105 (160)
..+|.|.-+|-+.|.+|...+.+++++.+....++.||.++-++..+-|.+..-+|+++|-++
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCC
Confidence 458999999999999999999999998877788899999999999888899777787666443
No 18
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.14 E-value=0.0009 Score=46.08 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=52.7
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeee
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFF 103 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFf 103 (160)
-.+|.|..+|-++|.+|...|.+++.+.+.-..++-||+++-+.+.+-|.+..-+|+++|-
T Consensus 14 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 74 (96)
T cd02956 14 PVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFA 74 (96)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEe
Confidence 4589999999999999999999999987765678999999999999999997767765553
No 19
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.14 E-value=0.0009 Score=48.52 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=53.7
Q ss_pred hhhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCcee
Q psy4160 42 CEDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHI 108 (160)
Q Consensus 42 c~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm 108 (160)
..+|+-|..+|-++|..|+.+|.++|++..+ ..++-||+++. +..+-|.+..=+|+++|.+++-+
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~v 89 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTLLVYKNGELI 89 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEEEEEECCEEE
Confidence 4568999999999999999999999998665 45688999988 88888888665588888777654
No 20
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.10 E-value=0.0003 Score=40.47 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.9
Q ss_pred hhHHhhccCCCCCCcccHHHHHH
Q psy4160 7 IAPFLNKCDADDDHLITLKEWAR 29 (160)
Q Consensus 7 ~~~Ff~~CD~~~D~~is~~EW~~ 29 (160)
++.+|+.+|+|+||.||..||..
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHH
Confidence 46789999999999999999976
No 21
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.06 E-value=0.0013 Score=47.87 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=57.1
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhcc-eEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCCC
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKNF-AVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNN 117 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvknf-avIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnn 117 (160)
.+|.|.-+|-+.|..+-.++.+++++.+.- ..++-||+++.+...+-|.+..-+|+++| ++.. .+...+|..
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~-~~g~-~~~~~~G~~ 99 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI-INGQ-VTFYHDSSF 99 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE-ECCE-EEEEecCCC
Confidence 489999999999999999999999988643 56789999999999999999776676666 4443 455555543
No 22
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.05 E-value=0.00096 Score=45.43 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=53.1
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhc--ceEEEEEeCCccccccccccccccceeeeeeeC
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKN--FAVIYLVDITKVPDFNKMYELYDPCTCMFFFRN 105 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvkn--favIYlvDi~~Vpdfn~myeL~dP~tvmFFfrn 105 (160)
.+|-|...|-+.|.++...|.++|.+.+. -..++.+|.++-|++.+-|.+...+|++||-.|
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 48999999999999999999999998775 567889999999999999999888887555544
No 23
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.04 E-value=0.00098 Score=46.61 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=55.1
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCc--cccccccccccccceeeeeeeCc
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITK--VPDFNKMYELYDPCTCMFFFRNK 106 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~--Vpdfn~myeL~dP~tvmFFfrnk 106 (160)
.+|-|.-+|-+.|.+|..++.++|++.+....++.+|.++ .+++.+-|.+..-+|+++|-+++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCC
Confidence 6899999999999999999999999888777888999988 88888889998888876765554
No 24
>KOG4578|consensus
Probab=97.02 E-value=0.00026 Score=64.21 Aligned_cols=32 Identities=34% Similarity=0.887 Sum_probs=29.1
Q ss_pred cchhHHhhccCCCCCCcccHHHHHHhhcCChh
Q psy4160 5 HCIAPFLNKCDADDDHLITLKEWARCLELNED 36 (160)
Q Consensus 5 ~C~~~Ff~~CD~~~D~~is~~EW~~C~~L~e~ 36 (160)
.|.+.||+-||.|+|++||+.||-.|++....
T Consensus 370 kC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 370 KCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred HHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 59999999999999999999999999876543
No 25
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=96.99 E-value=0.0022 Score=43.26 Aligned_cols=83 Identities=17% Similarity=0.341 Sum_probs=62.4
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCCCceeee
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINW 122 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnnnKin~ 122 (160)
..+|.|..+|-+.|.++.+.|.+++++..+-..++.+|.++-+.+-+-|.+..-+|++|| ++... +.-..|.
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~-~~g~~-~~~~~g~------ 87 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLF-KNGKE-VDRSVGA------ 87 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEE-eCCcE-eeeecCC------
Confidence 568999999999999999999999988776688899999999998888888776665455 54332 2333332
Q ss_pred ecCChhHHHHHHH
Q psy4160 123 ALEDKQEMIDIVE 135 (160)
Q Consensus 123 ~~~~kqe~iDiie 135 (160)
.+.+++.+.++
T Consensus 88 --~~~~~l~~~l~ 98 (101)
T TIGR01068 88 --LPKAALKQLIN 98 (101)
T ss_pred --CCHHHHHHHHH
Confidence 24566666665
No 26
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=96.95 E-value=0.002 Score=42.75 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=54.3
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhh--hcceEEEEEeCCccccccccccccccceeeeeeeCc
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKV--KNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNK 106 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kv--knfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnk 106 (160)
..+|-|..+|.+.|.++..++.++++.+ ..-..++.+|.++-+.+.+-|.+..-+|+ ++|++.
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~-~~~~~~ 81 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTI-KLFPNG 81 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEE-EEEcCC
Confidence 5689999999999999999999999999 47788899999999999999999877775 455544
No 27
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.95 E-value=0.0014 Score=46.91 Aligned_cols=64 Identities=11% Similarity=0.234 Sum_probs=50.7
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccc---cccccccccccceeeeeeeCcee
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVP---DFNKMYELYDPCTCMFFFRNKHI 108 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vp---dfn~myeL~dP~tvmFFfrnkHm 108 (160)
-+||.|+-+|-++|.+|...|.+++++.++ ..++.||+++-+ ++.+-|.+.-.+|++|| ++.-+
T Consensus 17 ~vvv~F~a~wC~~C~~~~p~l~~la~~~~~-v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~-~~G~~ 83 (103)
T cd02985 17 LVVLEFALKHSGPSVKIYPTMVKLSRTCND-VVFLLVNGDENDSTMELCRREKIIEVPHFLFY-KDGEK 83 (103)
T ss_pred EEEEEEECCCCHhHHHHhHHHHHHHHHCCC-CEEEEEECCCChHHHHHHHHcCCCcCCEEEEE-eCCeE
Confidence 358999999999999999999999998744 567889988754 78888888776786555 55433
No 28
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=96.95 E-value=0.0024 Score=45.38 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=56.5
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhc------ceEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCCC
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKN------FAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNN 117 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvkn------favIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnn 117 (160)
++|-|.-+|-+.|+++..++.++|.++++ -..++-||.++-++..+-|.+..=+|+.||-.++.+ ....+|..
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~~~-~~~~~g~~ 99 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGMMM-KREYRGQR 99 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCcCc-ceecCCCC
Confidence 48999999999999999999999988753 256788999999999999999765676666545433 34455543
No 29
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=96.94 E-value=0.0031 Score=49.82 Aligned_cols=66 Identities=20% Similarity=0.391 Sum_probs=54.7
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhc-ceEEEEEeCCccccccccccccc------cceeeeeeeCceeE
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITKVPDFNKMYELYD------PCTCMFFFRNKHIM 109 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvkn-favIYlvDi~~Vpdfn~myeL~d------P~tvmFFfrnkHm~ 109 (160)
+||.|.-+|-++|.+|..+|.++|++.+. -..++.||+++-|+..+-|.+.. -+|+++|-.++.+.
T Consensus 50 vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 50 WLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 48999999999999999999999998653 36778999999999999999865 34777776665554
No 30
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=96.92 E-value=0.0048 Score=44.88 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=61.2
Q ss_pred hhhhhccCCCChhhhhhHHHHH---HHHHhhhcceEEEEEeCCc-------------cccccccccccccceeeeeeeCc
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLY---SIAEKVKNFAVIYLVDITK-------------VPDFNKMYELYDPCTCMFFFRNK 106 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~---kia~kvknfavIYlvDi~~-------------Vpdfn~myeL~dP~tvmFFfrnk 106 (160)
-++|-|+.+|-+.|.+|.+.+. .+++.+++-..++-+|+++ .+++...|.+.--+|++|| ++.
T Consensus 16 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~-~~~ 94 (125)
T cd02951 16 PLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFL-DPE 94 (125)
T ss_pred cEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEE-cCC
Confidence 4589999999999999999885 5666565444556778765 2456667777555565444 321
Q ss_pred -eeEEecCCCCCceeeeecCChhHHHHHHHHHhhccccC
Q psy4160 107 -HIMIDLGTGNNNKINWALEDKQEMIDIVETVYRGARKG 144 (160)
Q Consensus 107 -Hm~vD~GTgnnnKin~~~~~kqe~iDiie~iyrga~kG 144 (160)
--.+. ++.+.. ++++|..+++.+..++-+|
T Consensus 95 gg~~~~-------~~~G~~-~~~~~~~~l~~~~~~~~~~ 125 (125)
T cd02951 95 GGKEIA-------RLPGYL-PPDEFLAYLEYVQEKAYKK 125 (125)
T ss_pred CCceeE-------EecCCC-CHHHHHHHHHHHHhhhhcC
Confidence 11122 233333 4688999999988877654
No 31
>PRK09381 trxA thioredoxin; Provisional
Probab=96.81 E-value=0.01 Score=41.87 Aligned_cols=70 Identities=17% Similarity=0.309 Sum_probs=55.4
Q ss_pred hhhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCceeEEec
Q psy4160 42 CEDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDL 112 (160)
Q Consensus 42 c~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~ 112 (160)
...+|.|...|-|.|.++...|.+++++.+.-..++.+|.+.-|..-+-|.+..-+|++|| ++..+.-.+
T Consensus 22 ~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~~~~~~ 91 (109)
T PRK09381 22 GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF-KNGEVAATK 91 (109)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE-eCCeEEEEe
Confidence 3468999999999999999999999998755467899999999998888888665575444 665554433
No 32
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.81 E-value=0.004 Score=43.62 Aligned_cols=82 Identities=13% Similarity=0.240 Sum_probs=60.1
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCCCceeee
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINW 122 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnnnKin~ 122 (160)
.+++-|..+|-+.|..+...|.+++++.+.-..++.+|+++-|++.+.|.+..-+|+++| ++..+ +.-..|.
T Consensus 15 ~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~-~~g~~-v~~~~g~------ 86 (97)
T cd02949 15 LILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFF-KDKEL-VKEISGV------ 86 (97)
T ss_pred eEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEE-ECCeE-EEEEeCC------
Confidence 347899999999999999999999988765456789999999999998888665666454 65543 3333333
Q ss_pred ecCChhHHHHHH
Q psy4160 123 ALEDKQEMIDIV 134 (160)
Q Consensus 123 ~~~~kqe~iDii 134 (160)
.++++|.+.+
T Consensus 87 --~~~~~~~~~l 96 (97)
T cd02949 87 --KMKSEYREFI 96 (97)
T ss_pred --ccHHHHHHhh
Confidence 3346666554
No 33
>PTZ00051 thioredoxin; Provisional
Probab=96.81 E-value=0.0038 Score=42.96 Aligned_cols=62 Identities=15% Similarity=0.287 Sum_probs=50.3
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCc
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNK 106 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnk 106 (160)
-.+|-|+.+|-+.|.++...|.+++.+..+ ..++.+|.++.++..+-|.+..-+|+.+| ++.
T Consensus 20 ~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g 81 (98)
T PTZ00051 20 LVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSEVAEKENITSMPTFKVF-KNG 81 (98)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCceeeEEEEE-eCC
Confidence 458999999999999999999999997665 35678999999998888988765566554 443
No 34
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.79 E-value=0.004 Score=43.06 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=53.3
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCcccccccccccc--ccceeeeeee
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELY--DPCTCMFFFR 104 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~--dP~tvmFFfr 104 (160)
.++-|...|.++|..|-+.|.++|++.+.-..++.||+++-|.+-+.|.|. ..+|+++|-.
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEec
Confidence 467788889999999999999999998877899999999999999999997 7778766643
No 35
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=96.79 E-value=0.0033 Score=43.98 Aligned_cols=61 Identities=10% Similarity=0.012 Sum_probs=53.4
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeee
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFF 103 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFf 103 (160)
..+|-|.-.|-+.|.+|-.++.++|++.+.-..++-||.++-|...+-|.+..=+|+++|-
T Consensus 20 ~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 20 IWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred eEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence 3589999999999999999999999998877888999999999998888887767766663
No 36
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=96.67 E-value=0.0082 Score=43.12 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=48.5
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhc-ceEEEEEeCCc-cccccc-cccccccceeeeeeeC
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITK-VPDFNK-MYELYDPCTCMFFFRN 105 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvkn-favIYlvDi~~-Vpdfn~-myeL~dP~tvmFFfrn 105 (160)
..+|-|+.+|-|.|.+|..++.++|.+.+. -..++.||.++ -.++.+ .|.+..-+|++||-++
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~ 88 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKN 88 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCC
Confidence 348999999999999999999999988764 25677899887 455553 5778777887666433
No 37
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=96.64 E-value=0.0088 Score=42.27 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=52.3
Q ss_pred hhhhhhccCCCChhhhhhHHHHHHHHHhhhcc---eEEEEEeCCccccccccccccccceeeeeeeCc
Q psy4160 42 CEDVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITKVPDFNKMYELYDPCTCMFFFRNK 106 (160)
Q Consensus 42 c~~viRFGrd~dp~Cm~mDevL~kia~kvknf---avIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnk 106 (160)
...+|-|.-+|-|+|.+|-.+|.+++++.+.. ..++.+|.++-|+..+.|.+..-+|+++| ++.
T Consensus 16 ~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~-~~~ 82 (104)
T cd03000 16 DIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLL-KGD 82 (104)
T ss_pred CeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEE-cCC
Confidence 35589999999999999999999999987532 55677899999999999999777776565 554
No 38
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=96.59 E-value=0.0071 Score=41.50 Aligned_cols=63 Identities=19% Similarity=0.341 Sum_probs=52.4
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhc---ceEEEEEeCCccccccccccccccceeeeeeeCc
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKN---FAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNK 106 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvkn---favIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnk 106 (160)
..+|-|..+|-++|.++..++.+++++.+. -..++.+|.++-+...+-|.+..-+|+++| ++.
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g 83 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF-KDG 83 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE-eCC
Confidence 478999999999999999999999998765 567789999998888888888665676555 543
No 39
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=96.56 E-value=0.0064 Score=41.59 Aligned_cols=72 Identities=22% Similarity=0.243 Sum_probs=52.2
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcc--eEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCC
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNF--AVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTG 115 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknf--avIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTg 115 (160)
-.+|-|..+|-+.|.+|..++.+++++.++. ..++.+|.++- +....+.+..-+|+++|-+++.-.....+|
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g 93 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGDKSNPIKYEG 93 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCCcCCceEccC
Confidence 3478999999999999999999999988774 56678898774 344555566667777776665333333344
No 40
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.54 E-value=0.0048 Score=43.96 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=50.4
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhh-cceEEEEEeCCccccccccccccccceeeeeeeCc
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVK-NFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNK 106 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvk-nfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnk 106 (160)
-++|.|.-+|-++|.+|-.+|.+++++.+ +...++.+|++ .|+..+-|.+...+|++|| ++.
T Consensus 19 ~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~-~~g 81 (102)
T cd02948 19 LTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFY-KNG 81 (102)
T ss_pred eEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEE-ECC
Confidence 45899999999999999999999999876 34668889999 7788888888766687665 444
No 41
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=96.52 E-value=0.0071 Score=42.06 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=51.8
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcc-eEEEEEeCCccccccccccccccceeeeeeeCc
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNF-AVIYLVDITKVPDFNKMYELYDPCTCMFFFRNK 106 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknf-avIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnk 106 (160)
..+|.|.-+|-+.|.+|..++.+++++.+.. ..++-||.++-|...+-|.+.--+|+++| ++.
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~-~~g 81 (101)
T cd02994 18 EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA-KDG 81 (101)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe-CCC
Confidence 3689999999999999999999999876543 56789999999998888999777776554 443
No 42
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.47 E-value=0.0055 Score=48.90 Aligned_cols=64 Identities=9% Similarity=0.128 Sum_probs=51.2
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCcee
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHI 108 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm 108 (160)
.+||.|..+|-++|..|+.+|.++|.+-.+ ..++-||+++. +...-|.+..=+|+++|.+++-+
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v 148 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYPA-VKFCKIRASAT-GASDEFDTDALPALLVYKGGELI 148 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCCC-eEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEE
Confidence 579999999999999999999999997644 66789999875 66666777655687777666543
No 43
>PHA02278 thioredoxin-like protein
Probab=96.47 E-value=0.0048 Score=45.43 Aligned_cols=74 Identities=8% Similarity=0.138 Sum_probs=54.8
Q ss_pred hhhhhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCcc----ccccccccccccceeeeeeeCceeEEecCCC
Q psy4160 40 DQCEDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKV----PDFNKMYELYDPCTCMFFFRNKHIMIDLGTG 115 (160)
Q Consensus 40 ~rc~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~V----pdfn~myeL~dP~tvmFFfrnkHm~vD~GTg 115 (160)
...-+||.|.-+|-++|..|..+|.+++++...-+.++.+|+++. |+..+-|++..=+|+||| ++.. .++-..|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f-k~G~-~v~~~~G 90 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY-KDGQ-LVKKYED 90 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE-ECCE-EEEEEeC
Confidence 344569999999999999999999999986433356899999975 678888998766687665 5432 3343334
No 44
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=96.27 E-value=0.0067 Score=43.59 Aligned_cols=61 Identities=11% Similarity=0.230 Sum_probs=50.5
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCC-ccccccccccccccceeeeeeeCc
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDIT-KVPDFNKMYELYDPCTCMFFFRNK 106 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~-~Vpdfn~myeL~dP~tvmFFfrnk 106 (160)
++|.|.-.|-+.|.+|--+|.++|++.+++. ++.||.+ +-|+..+-|.+..=+|+++| ++.
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~-~~~vd~~~~~~~l~~~~~V~~~PT~~lf-~~g 82 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIR-HLAIEESSIKPSLLSRYGVVGFPTILLF-NST 82 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCc-eEEEECCCCCHHHHHhcCCeecCEEEEE-cCC
Confidence 4899999999999999999999999887754 5667888 78988899999776687565 444
No 45
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.22 E-value=0.026 Score=47.30 Aligned_cols=91 Identities=18% Similarity=0.276 Sum_probs=69.3
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCCCceeee
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINW 122 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnnnKin~ 122 (160)
..+|-|.-+|-+.|.+|-.++.++|++.+.-..++-+|.++-|+..+-|.+..-+|+++|-+++ .+++-+|.
T Consensus 54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~--~v~~~~G~------ 125 (224)
T PTZ00443 54 PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGK--MYQYEGGD------ 125 (224)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCE--EEEeeCCC------
Confidence 3479999999999999999999999988876778889999999999999997767766665444 34544442
Q ss_pred ecCChhHHHHHHHHHhhcccc
Q psy4160 123 ALEDKQEMIDIVETVYRGARK 143 (160)
Q Consensus 123 ~~~~kqe~iDiie~iyrga~k 143 (160)
.+++++.+-++.-|..+..
T Consensus 126 --~s~e~L~~fi~~~~~~~~~ 144 (224)
T PTZ00443 126 --RSTEKLAAFALGDFKKALG 144 (224)
T ss_pred --CCHHHHHHHHHHHHHhhcC
Confidence 3556777777776665543
No 46
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=96.21 E-value=0.017 Score=39.67 Aligned_cols=64 Identities=25% Similarity=0.335 Sum_probs=48.6
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcc--eEEEEEeCCc--cccccccccccccceeeeeeeCce
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNF--AVIYLVDITK--VPDFNKMYELYDPCTCMFFFRNKH 107 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknf--avIYlvDi~~--Vpdfn~myeL~dP~tvmFFfrnkH 107 (160)
-.+|-|.-+|-+.|.++...+..++.+.++. ..+..+|.++ -+.+.+-|.+...+|++ +|++..
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~-~~~~g~ 86 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK-YFENGK 86 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE-EEeCCC
Confidence 4489999999999999999999999887632 3445578877 88888888886656754 455544
No 47
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.16 E-value=0.0099 Score=41.78 Aligned_cols=59 Identities=25% Similarity=0.490 Sum_probs=46.8
Q ss_pred hhhhccCCCChhhhhhHHHH---HHHHHhhhcceEEEEEeCCc----cccccccccccccceeeee
Q psy4160 44 DVIRFGHDWDPTCMKMDEVL---YSIAEKVKNFAVIYLVDITK----VPDFNKMYELYDPCTCMFF 102 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL---~kia~kvknfavIYlvDi~~----Vpdfn~myeL~dP~tvmFF 102 (160)
++|-|+-+|-+.|.+|-.++ .+++++.++-..++-+|+++ .+.+.+-|.+..-+|++||
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 47899999999999998776 57777777556667789887 7888888888766676555
No 48
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.15 E-value=0.019 Score=43.86 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=64.3
Q ss_pred hhhhhccCCCChh--hh--hhHHHHHHHHHhh--hcceEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCC
Q psy4160 43 EDVIRFGHDWDPT--CM--KMDEVLYSIAEKV--KNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGN 116 (160)
Q Consensus 43 ~~viRFGrd~dp~--Cm--~mDevL~kia~kv--knfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgn 116 (160)
.+|+-|.-.|-.+ |. .|-.+|+++|.+. +.=+.++-||+++-|+.-+-|.+..-+|+++|-+++ .+++ +|.
T Consensus 29 ~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~G~--~v~~-~G~ 105 (120)
T cd03065 29 LCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKDDE--VIEY-DGE 105 (120)
T ss_pred eEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEEEECCE--EEEe-eCC
Confidence 4578899999887 98 8888999998876 555899999999999999999998888987776554 3442 222
Q ss_pred CceeeeecCChhHHHHHHHHH
Q psy4160 117 NNKINWALEDKQEMIDIVETV 137 (160)
Q Consensus 117 nnKin~~~~~kqe~iDiie~i 137 (160)
.+++++...|+.+
T Consensus 106 --------~~~~~l~~~l~~~ 118 (120)
T cd03065 106 --------FAADTLVEFLLDL 118 (120)
T ss_pred --------CCHHHHHHHHHHH
Confidence 2457777766654
No 49
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.11 E-value=0.033 Score=42.64 Aligned_cols=90 Identities=13% Similarity=0.193 Sum_probs=63.1
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCcc--ccccccccccccceeeeeeeCceeEEecCCCCCcee
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKV--PDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKI 120 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~V--pdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnnnKi 120 (160)
-+||-|+-.|-+.|.+|...|.+++++.+.-..++.||++.- +...+-|.+.--+|++||-++.- .+. ++
T Consensus 22 ~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~-~v~-------~~ 93 (142)
T cd02950 22 PTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN-EEG-------QS 93 (142)
T ss_pred EEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC-EEE-------EE
Confidence 358999999999999999999999998765456777787753 45666777766667645532221 222 22
Q ss_pred eeecCChhHHHHHHHHHhhcc
Q psy4160 121 NWALEDKQEMIDIVETVYRGA 141 (160)
Q Consensus 121 n~~~~~kqe~iDiie~iyrga 141 (160)
.+. .++++|.++|+.+..|.
T Consensus 94 ~G~-~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 94 IGL-QPKQVLAQNLDALVAGE 113 (142)
T ss_pred eCC-CCHHHHHHHHHHHHcCC
Confidence 232 34688999999988765
No 50
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.00 E-value=0.0045 Score=36.16 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.3
Q ss_pred hHHhhccCCCCCCcccHHHHHHhh
Q psy4160 8 APFLNKCDADDDHLITLKEWARCL 31 (160)
Q Consensus 8 ~~Ff~~CD~~~D~~is~~EW~~C~ 31 (160)
+.+|+.+|.|+||.||..|+..++
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l 26 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAIL 26 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHH
Confidence 578999999999999999999985
No 51
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=95.98 E-value=0.018 Score=39.32 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=51.1
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhh--cceEEEEEeCCc-cccccccccccccceeeeeeeC
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVK--NFAVIYLVDITK-VPDFNKMYELYDPCTCMFFFRN 105 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvk--nfavIYlvDi~~-Vpdfn~myeL~dP~tvmFFfrn 105 (160)
..++-|+-+|-+.|+++...+..++.+.+ +-..++-+|.++ .+++.+-|.+..-+|+++|-.+
T Consensus 20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~ 85 (105)
T cd02998 20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKG 85 (105)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCC
Confidence 35889999999999999999999999876 345677889989 8999988899776675455433
No 52
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=95.90 E-value=0.023 Score=42.52 Aligned_cols=69 Identities=9% Similarity=0.108 Sum_probs=55.5
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCcccccc-ccccccccceeeeeeeCceeEEec
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFN-KMYELYDPCTCMFFFRNKHIMIDL 112 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn-~myeL~dP~tvmFFfrnkHm~vD~ 112 (160)
-+++-|.-.|-+.|.+|--++.++|++.+.-+.+.-||.++-++.. +-|.+.-=+|+++| ++.+....+
T Consensus 31 ~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf-~~g~~~~~y 100 (113)
T cd03006 31 VSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLY-YRSRGPIEY 100 (113)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEE-ECCccceEE
Confidence 3489999999999999999999999998876788999999998887 57888665688777 454444443
No 53
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.67 E-value=0.027 Score=36.36 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=51.7
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCC-cccccccccc--ccccceeeeeeeCce
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDIT-KVPDFNKMYE--LYDPCTCMFFFRNKH 107 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~-~Vpdfn~mye--L~dP~tvmFFfrnkH 107 (160)
.+++.|+..|-|.|+.+...|..++++..+-..+..+|.. ..++..++|. .....++..+.+++.
T Consensus 34 ~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 34 PVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred eEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 3467788999999999999999999987776777888886 8999999999 666566555554443
No 54
>KOG0910|consensus
Probab=95.62 E-value=0.04 Score=44.59 Aligned_cols=85 Identities=15% Similarity=0.364 Sum_probs=66.7
Q ss_pred hhhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCCCceee
Q psy4160 42 CEDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKIN 121 (160)
Q Consensus 42 c~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnnnKin 121 (160)
--+++-|--.|=-+|..|..+|.+++...++-...|.||+++=|++-.=|++.-=+|+|-|=++.-+ .++.
T Consensus 62 ~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~---------d~~v 132 (150)
T KOG0910|consen 62 VPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKV---------DRFV 132 (150)
T ss_pred CCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEEe---------eeec
Confidence 3457899999999999999999999999999999999999999999999999665666677655443 3555
Q ss_pred eecCChhHHHHHHHH
Q psy4160 122 WALEDKQEMIDIVET 136 (160)
Q Consensus 122 ~~~~~kqe~iDiie~ 136 (160)
++... ..+...|+.
T Consensus 133 G~~~~-~~l~~~i~k 146 (150)
T KOG0910|consen 133 GAVPK-EQLRSLIKK 146 (150)
T ss_pred ccCCH-HHHHHHHHH
Confidence 55544 345555543
No 55
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=95.49 E-value=0.069 Score=40.84 Aligned_cols=89 Identities=15% Similarity=0.068 Sum_probs=60.4
Q ss_pred hhhhccCCCChhhhhhHHHH---HHHHHhhhcceEEEEEeCCcccccccc--------ccccccceeeeee-eCceeEEe
Q psy4160 44 DVIRFGHDWDPTCMKMDEVL---YSIAEKVKNFAVIYLVDITKVPDFNKM--------YELYDPCTCMFFF-RNKHIMID 111 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL---~kia~kvknfavIYlvDi~~Vpdfn~m--------yeL~dP~tvmFFf-rnkHm~vD 111 (160)
++|-||.+|=+.|..|+... ..+++.+.+-.+..-+|+++-|+..+. |...-++|+.|+= .++.+.-+
T Consensus 18 Vll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 18 IFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 37889999999999999744 345666654445567899998886553 3344566765553 36788888
Q ss_pred cCCCCCceeeeecCChhHHHHHHHHH
Q psy4160 112 LGTGNNNKINWALEDKQEMIDIVETV 137 (160)
Q Consensus 112 ~GTgnnnKin~~~~~kqe~iDiie~i 137 (160)
.|.+.-+++.. +.|-++++.|
T Consensus 98 ~~~~~~~~~~~-----~~~~~~~~~~ 118 (124)
T cd02955 98 TYFPPEDRYGR-----PGFKTVLEKI 118 (124)
T ss_pred eecCCCCcCCC-----cCHHHHHHHH
Confidence 77766666653 5566666544
No 56
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=95.47 E-value=0.043 Score=50.78 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=54.8
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhc-ceEEEEEeCCccc-cc-cccccccccceeeeeeeCceeEEecCCC
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITKVP-DF-NKMYELYDPCTCMFFFRNKHIMIDLGTG 115 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvkn-favIYlvDi~~Vp-df-n~myeL~dP~tvmFFfrnkHm~vD~GTg 115 (160)
++|-|.-+|-+.|..|..++.++|++.+. ...++.||++.-+ .+ .+.|.+..-+|++||-++++-.+.+.+|
T Consensus 374 VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g 448 (463)
T TIGR00424 374 WLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKYPSE 448 (463)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEECCCCCceeCCCC
Confidence 36789999999999999999999998764 2567889988643 34 3678888889988887665544555433
No 57
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=95.28 E-value=0.013 Score=34.74 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.5
Q ss_pred hHHhhccCCCCCCcccHHHHHHhh
Q psy4160 8 APFLNKCDADDDHLITLKEWARCL 31 (160)
Q Consensus 8 ~~Ff~~CD~~~D~~is~~EW~~C~ 31 (160)
+.-|+.-|.|+||.||.+|+..++
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHH
Confidence 567899999999999999999874
No 58
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.11 E-value=0.12 Score=41.60 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=58.9
Q ss_pred ccC---CCChhhhhhHHHHHHHHHhhhcce-EEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCCCceeeee
Q psy4160 48 FGH---DWDPTCMKMDEVLYSIAEKVKNFA-VIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINWA 123 (160)
Q Consensus 48 FGr---d~dp~Cm~mDevL~kia~kvknfa-vIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnnnKin~~ 123 (160)
|-. +|-++|.+|..+|..+|++..+.. .++-+|.++-|+..+-|.+.--+|+++|=+++.... ++.+
T Consensus 26 f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~--------~~~G- 96 (215)
T TIGR02187 26 FTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGI--------RYTG- 96 (215)
T ss_pred EcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEE--------EEee-
Confidence 655 899999999999999998765542 234444559999999999988889877643333211 1222
Q ss_pred cCChhHHHHHHHHHhh
Q psy4160 124 LEDKQEMIDIVETVYR 139 (160)
Q Consensus 124 ~~~kqe~iDiie~iyr 139 (160)
..++++|...|+.++.
T Consensus 97 ~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 97 IPAGYEFAALIEDIVR 112 (215)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4556788888888873
No 59
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=95.09 E-value=0.052 Score=41.52 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=49.0
Q ss_pred hhhhhccC-------CCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccc-------ccccccccc-ccceeeee
Q psy4160 43 EDVIRFGH-------DWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVP-------DFNKMYELY-DPCTCMFF 102 (160)
Q Consensus 43 ~~viRFGr-------d~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vp-------dfn~myeL~-dP~tvmFF 102 (160)
-+||-|.- +|-++|..|.-+|.+++++.+.-..+|-||+++.| ++-+-|.+. -=+|+|+|
T Consensus 23 ~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~ 97 (119)
T cd02952 23 PIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRW 97 (119)
T ss_pred eEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEE
Confidence 35888888 89999999999999999988744677999998754 788888886 55587777
No 60
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=94.91 E-value=0.045 Score=40.14 Aligned_cols=63 Identities=13% Similarity=0.201 Sum_probs=47.9
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcc---eEEEEEeC--CccccccccccccccceeeeeeeC
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDI--TKVPDFNKMYELYDPCTCMFFFRN 105 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknf---avIYlvDi--~~Vpdfn~myeL~dP~tvmFFfrn 105 (160)
-++|-|.-+|-++|..|-..+.+++++.+.. ..+..+|. ++.+++.+-|.+..-+|+.+|-++
T Consensus 21 ~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~ 88 (114)
T cd02992 21 AWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPF 88 (114)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCC
Confidence 4589999999999999999999999988753 44566663 457778888888665676555433
No 61
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=94.82 E-value=0.046 Score=44.49 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=44.6
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCc
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNK 106 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnk 106 (160)
-+|+.|..+|-++|..|+.+|.++|.+-.. ..++-||++.. ..-|.+..=+|+++|.+++
T Consensus 104 ~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~~---~~~~~i~~lPTlliyk~G~ 163 (192)
T cd02988 104 WVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQC---IPNYPDKNLPTILVYRNGD 163 (192)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHHh---HhhCCCCCCCEEEEEECCE
Confidence 368999999999999999999999997543 45677777754 3456665445765665554
No 62
>PTZ00062 glutaredoxin; Provisional
Probab=94.73 E-value=0.09 Score=43.66 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=45.5
Q ss_pred hhhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCceeEEe
Q psy4160 42 CEDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMID 111 (160)
Q Consensus 42 c~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD 111 (160)
+..|+-|.-+|-|+|.+|+++|..++++-.+ +..|-||.+ |++.-=+|++|| ++.- .+|
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d--------~~V~~vPtfv~~-~~g~-~i~ 76 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA--------DANNEYGVFEFY-QNSQ-LIN 76 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc--------cCcccceEEEEE-ECCE-EEe
Confidence 5569999999999999999999999998765 666888877 777655665454 4433 355
No 63
>PLN02309 5'-adenylylsulfate reductase
Probab=94.18 E-value=0.16 Score=46.99 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=49.8
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhcc-eEEEEEeCC-ccccccc-cccccccceeeeeee
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKNF-AVIYLVDIT-KVPDFNK-MYELYDPCTCMFFFR 104 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvknf-avIYlvDi~-~Vpdfn~-myeL~dP~tvmFFfr 104 (160)
.+|-|.-+|-+.|.+|..++.++|++++.- ..++.+|.+ +-.++.+ .|.+..-+|++||-+
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~~ 431 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFPK 431 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEeC
Confidence 378899999999999999999999987654 678999998 5566654 689988899766643
No 64
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=94.08 E-value=0.12 Score=33.58 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=46.8
Q ss_pred hhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCcee
Q psy4160 45 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHI 108 (160)
Q Consensus 45 viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm 108 (160)
|.-|..+|=|.|.++-+.|.++++.- .-...+.+|+++-|+..+.|.+..=+| +++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPt--i~i~~~~~ 63 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPA--IVINGKVE 63 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCE--EEECCEEE
Confidence 45588899999999999999998753 335668889999998888888855455 35577765
No 65
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=93.90 E-value=0.095 Score=38.96 Aligned_cols=59 Identities=8% Similarity=0.137 Sum_probs=41.0
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCcccc-ccccccccc--cceeeee
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPD-FNKMYELYD--PCTCMFF 102 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpd-fn~myeL~d--P~tvmFF 102 (160)
++|-|+.+|=++|..|...+.+.++..+.-..+++||+++-++ ..+.|.+.- .+|++||
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~ 83 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFL 83 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEE
Confidence 4899999999999999999999766433223567788876553 345666632 4565444
No 66
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=93.50 E-value=0.18 Score=33.28 Aligned_cols=78 Identities=12% Similarity=0.233 Sum_probs=56.1
Q ss_pred hhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCCCceeeeec
Q psy4160 45 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINWAL 124 (160)
Q Consensus 45 viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnnnKin~~~ 124 (160)
|.=|...|-|.|..+..+|.+++...+.-..++.||+++-|+-.+-|.+.--+|++ ++++ . ++.+ .
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~--~~g~-~----------~~~G-~ 68 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIV--INGD-V----------EFIG-A 68 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEE--ECCE-E----------EEec-C
Confidence 45588999999999999999999876655677899999999888878875444532 3432 1 2333 3
Q ss_pred CChhHHHHHHHH
Q psy4160 125 EDKQEMIDIVET 136 (160)
Q Consensus 125 ~~kqe~iDiie~ 136 (160)
.+++++.+.++.
T Consensus 69 ~~~~~l~~~l~~ 80 (82)
T TIGR00411 69 PTKEELVEAIKK 80 (82)
T ss_pred CCHHHHHHHHHh
Confidence 366777777664
No 67
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=93.46 E-value=0.2 Score=42.87 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=53.5
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhcc---eEEEEEeCCccccccccccccccceeeeeeeCce
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKH 107 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvknf---avIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkH 107 (160)
.+|-|..+|-+.|.++..++.++|.+++.. ..+..||.++=+...+-|.+...+|+++|-++++
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 87 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGED 87 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCcc
Confidence 589999999999999999999999987654 6778889988888888888877778777765665
No 68
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=93.16 E-value=0.07 Score=33.76 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=22.9
Q ss_pred hhHHhhccCCCCCCcccHHHHHHhh
Q psy4160 7 IAPFLNKCDADDDHLITLKEWARCL 31 (160)
Q Consensus 7 ~~~Ff~~CD~~~D~~is~~EW~~C~ 31 (160)
+...|...|+++||.||..||+..+
T Consensus 27 ~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 27 VDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp HHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred HHHHHHhcccCCCCCCCHHHHHHHH
Confidence 6778999999999999999999874
No 69
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=93.14 E-value=0.11 Score=33.69 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.1
Q ss_pred hhHHhhccCCCCCCcccHHHHHHhh
Q psy4160 7 IAPFLNKCDADDDHLITLKEWARCL 31 (160)
Q Consensus 7 ~~~Ff~~CD~~~D~~is~~EW~~C~ 31 (160)
++..|+.+|+++||.||.+|+...+
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~ 26 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRAL 26 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHH
Confidence 3567899999999999999988764
No 70
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=93.04 E-value=0.1 Score=26.83 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.9
Q ss_pred hHHhhccCCCCCCcccHHHHHHhh
Q psy4160 8 APFLNKCDADDDHLITLKEWARCL 31 (160)
Q Consensus 8 ~~Ff~~CD~~~D~~is~~EW~~C~ 31 (160)
+..|+.+|.+++|.|+..||...+
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHH
Confidence 456899999999999999999864
No 71
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=92.75 E-value=0.34 Score=39.05 Aligned_cols=78 Identities=9% Similarity=0.059 Sum_probs=57.5
Q ss_pred hhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCCCceeeeec
Q psy4160 45 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINWAL 124 (160)
Q Consensus 45 viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnnnKin~~~ 124 (160)
|+-|.-+|-|.|..|..+|.+++.+- .-..++.+|+++-|+...-|.+..-+|++|+ ++. .+ +.+ .
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~-~~~-~~----------~~G-~ 202 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPDLAEKYGVMSVPKIVIN-KGV-EE----------FVG-A 202 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHHHHHHhCCccCCEEEEe-cCC-EE----------EEC-C
Confidence 45599999999999999999998862 3355678999999999999999776776654 221 11 333 4
Q ss_pred CChhHHHHHHHH
Q psy4160 125 EDKQEMIDIVET 136 (160)
Q Consensus 125 ~~kqe~iDiie~ 136 (160)
.++++|.+.++.
T Consensus 203 ~~~~~l~~~l~~ 214 (215)
T TIGR02187 203 YPEEQFLEYILS 214 (215)
T ss_pred CCHHHHHHHHHh
Confidence 456788877763
No 72
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=92.65 E-value=0.56 Score=36.91 Aligned_cols=75 Identities=8% Similarity=0.193 Sum_probs=55.2
Q ss_pred hhhhhhHHHHHHHHHhhhcc-eEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCCCceeeeecCChhHHHH
Q psy4160 54 PTCMKMDEVLYSIAEKVKNF-AVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINWALEDKQEMID 132 (160)
Q Consensus 54 p~Cm~mDevL~kia~kvknf-avIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnnnKin~~~~~kqe~iD 132 (160)
|...-.=-+|..++++.... ..++.||+++-|+.-.-|.+..=+|+|||=+++-+ .++++ +.+|++++.
T Consensus 49 ~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v---------~~i~G-~~~k~~l~~ 118 (132)
T PRK11509 49 PEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYR---------GVLNG-IHPWAELIN 118 (132)
T ss_pred CccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEE---------EEEeC-cCCHHHHHH
Confidence 44444455899999987655 78999999999999999999776687777555444 23333 456788888
Q ss_pred HHHHHh
Q psy4160 133 IVETVY 138 (160)
Q Consensus 133 iie~iy 138 (160)
.|+.+.
T Consensus 119 ~I~~~L 124 (132)
T PRK11509 119 LMRGLV 124 (132)
T ss_pred HHHHHh
Confidence 888654
No 73
>KOG0907|consensus
Probab=92.22 E-value=0.26 Score=36.88 Aligned_cols=65 Identities=20% Similarity=0.354 Sum_probs=54.6
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCceeE
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIM 109 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~ 109 (160)
..|+-|=-.|-++|..|==.+.++|.+-.+ +.++-||+++.+++-+=|++.-=+|. .|||+.-.+
T Consensus 23 liVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf-~f~k~g~~~ 87 (106)
T KOG0907|consen 23 LVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTF-VFYKGGEEV 87 (106)
T ss_pred eEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEE-EEEECCEEE
Confidence 448999999999999999999999999999 99999999999989998888776775 444554433
No 74
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=92.18 E-value=0.11 Score=33.69 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=22.6
Q ss_pred cchhHHhhccCCCCCCcccHHHHHHh
Q psy4160 5 HCIAPFLNKCDADDDHLITLKEWARC 30 (160)
Q Consensus 5 ~C~~~Ff~~CD~~~D~~is~~EW~~C 30 (160)
.-+...|+..|+|+||.||..||...
T Consensus 40 ~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 40 EMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 45677899999999999999999864
No 75
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=90.51 E-value=1.3 Score=38.03 Aligned_cols=57 Identities=26% Similarity=0.342 Sum_probs=44.9
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhc---ceEEEEEeCCccccccccccccccceeeee
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKN---FAVIYLVDITKVPDFNKMYELYDPCTCMFF 102 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvkn---favIYlvDi~~Vpdfn~myeL~dP~tvmFF 102 (160)
++|-|.-+|.+.|..|..++.++|.+.++ -..+|-+|+++- +... |.+..-+|++||
T Consensus 367 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n-~~~~-~~i~~~Pt~~~~ 426 (462)
T TIGR01130 367 VLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN-DVPP-FEVEGFPTIKFV 426 (462)
T ss_pred EEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC-ccCC-CCccccCEEEEE
Confidence 47889999999999999999999998876 567888997652 2333 777776776454
No 76
>PTZ00102 disulphide isomerase; Provisional
Probab=89.15 E-value=1.1 Score=39.18 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=60.0
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhc--ceEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCCCceee
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKN--FAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKIN 121 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvkn--favIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnnnKin 121 (160)
++|-|.-+|-+.|.+|-.++.++|.+.+. ...++.+|.++-+...+-|.+.--+|++||=+++.+.+ .+.
T Consensus 378 vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~--------~~~ 449 (477)
T PTZ00102 378 VLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPI--------PYE 449 (477)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCccee--------Eec
Confidence 47899999999999999999999987654 46788899887766666777766677655533433211 122
Q ss_pred eecCChhHHHHHHHHHh
Q psy4160 122 WALEDKQEMIDIVETVY 138 (160)
Q Consensus 122 ~~~~~kqe~iDiie~iy 138 (160)
+ -.+.+++++.|+...
T Consensus 450 G-~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 450 G-ERTVEGFKEFVNKHA 465 (477)
T ss_pred C-cCCHHHHHHHHHHcC
Confidence 2 235577777777644
No 77
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=89.00 E-value=0.93 Score=42.50 Aligned_cols=85 Identities=15% Similarity=0.250 Sum_probs=58.0
Q ss_pred hhhhccCCCChhhhhhHHHH---HHHHHhhhcceEEEEEeCCc----cccccccccccccceeeeeeeC-ceeEEecCCC
Q psy4160 44 DVIRFGHDWDPTCMKMDEVL---YSIAEKVKNFAVIYLVDITK----VPDFNKMYELYDPCTCMFFFRN-KHIMIDLGTG 115 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL---~kia~kvknfavIYlvDi~~----Vpdfn~myeL~dP~tvmFFfrn-kHm~vD~GTg 115 (160)
++|-|.-+|=++|..|+... .+++++.+++ +++-+|+++ .+++-+-|.+.-++|++||=++ +-+..
T Consensus 477 VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~-~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~----- 550 (571)
T PRK00293 477 VMLDLYADWCVACKEFEKYTFSDPQVQQALADT-VLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPD----- 550 (571)
T ss_pred EEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCC-EEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCccc-----
Confidence 58899999999999998865 5667777775 456789874 4567777888888897554212 22212
Q ss_pred CCceeeeecCChhHHHHHHHHH
Q psy4160 116 NNNKINWALEDKQEMIDIVETV 137 (160)
Q Consensus 116 nnnKin~~~~~kqe~iDiie~i 137 (160)
.++.+. .++++|.+.++.+
T Consensus 551 --~r~~G~-~~~~~f~~~L~~~ 569 (571)
T PRK00293 551 --ARVTGF-MDAAAFAAHLRQL 569 (571)
T ss_pred --ccccCC-CCHHHHHHHHHHh
Confidence 223333 3678898888763
No 78
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=88.61 E-value=0.62 Score=29.67 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.4
Q ss_pred hHHhhccCCCCCCcccHHHHHHhh
Q psy4160 8 APFLNKCDADDDHLITLKEWARCL 31 (160)
Q Consensus 8 ~~Ff~~CD~~~D~~is~~EW~~C~ 31 (160)
+..|...|+++||.||.+|-..++
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l 25 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFL 25 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHH
Confidence 467889999999999999998886
No 79
>PTZ00102 disulphide isomerase; Provisional
Probab=88.22 E-value=1.1 Score=39.24 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=53.7
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhc---ceEEEEEeCCccccccccccccccceeeeeeeCcee
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKN---FAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHI 108 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvkn---favIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm 108 (160)
..++-|.-+|-+.|.++-..+.++|..++. -..++-||.++-+...+-|.+...+|+++|-+++.+
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPV 119 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceE
Confidence 468899999999999999999999887653 377888999999998888999888887666545543
No 80
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=88.11 E-value=2.1 Score=36.57 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=30.4
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCc
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITK 83 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~ 83 (160)
.+|-|...|.|.|.++--+|..++++-+ +. +..|+++.
T Consensus 169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~-Vi~VsvD~ 206 (271)
T TIGR02740 169 GLFFFFKSDCPYCHQQAPILQAFEDRYG-IE-VLPVSVDG 206 (271)
T ss_pred EEEEEECCCCccHHHHhHHHHHHHHHcC-cE-EEEEeCCC
Confidence 3899999999999999999999999754 43 44556655
No 81
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=87.38 E-value=0.55 Score=27.84 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=19.0
Q ss_pred hHHhhccCCCCCCcccHHHHHHh
Q psy4160 8 APFLNKCDADDDHLITLKEWARC 30 (160)
Q Consensus 8 ~~Ff~~CD~~~D~~is~~EW~~C 30 (160)
+..|+.+|.+++|.||..||..+
T Consensus 39 ~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 39 DEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHhCCCCCCeEeHHHHHHH
Confidence 45788888889999999988775
No 82
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.36 E-value=1.2 Score=39.90 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=55.2
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCcee
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHI 108 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm 108 (160)
+++-||.+|-++|.++=.+|.++++.-+-=...--||+++.|+.-.-|.+..=+||.-|=.+|-+
T Consensus 46 VlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpV 110 (304)
T COG3118 46 VLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPV 110 (304)
T ss_pred eEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCc
Confidence 48999999999999999999999997655556678999999999999999776666677667753
No 83
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=85.84 E-value=4.4 Score=29.13 Aligned_cols=84 Identities=10% Similarity=0.160 Sum_probs=55.2
Q ss_pred hhhccCCCChhhhhhHH-HHH--HHHHhhhcceEEEEEeCCc--cccccccccccccceeeeeeeCceeEEecCCCCC-c
Q psy4160 45 VIRFGHDWDPTCMKMDE-VLY--SIAEKVKNFAVIYLVDITK--VPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNN-N 118 (160)
Q Consensus 45 viRFGrd~dp~Cm~mDe-vL~--kia~kvknfavIYlvDi~~--Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnn-n 118 (160)
+|-|-.+|.+.|..|+. +|. .+++.+++-.+.+.+|+++ ...|-..|.....++++|+ ..+ +|.. .
T Consensus 21 lv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i-~~~-------~g~~l~ 92 (114)
T cd02958 21 LVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII-DPR-------TGEVLK 92 (114)
T ss_pred EEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE-eCc-------cCcEeE
Confidence 78899999999999987 442 3444566667788899874 5556677777666776555 332 3332 3
Q ss_pred eeeeecCChhHHHHHHHHH
Q psy4160 119 KINWALEDKQEMIDIVETV 137 (160)
Q Consensus 119 Kin~~~~~kqe~iDiie~i 137 (160)
.+.+.+ ++++|+..+..+
T Consensus 93 ~~~G~~-~~~~f~~~L~~~ 110 (114)
T cd02958 93 VWSGNI-TPEDLLSQLIEF 110 (114)
T ss_pred EEcCCC-CHHHHHHHHHHH
Confidence 344444 557888777654
No 84
>PHA02125 thioredoxin-like protein
Probab=85.44 E-value=1.1 Score=30.39 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=39.9
Q ss_pred hhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceee
Q psy4160 45 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCM 100 (160)
Q Consensus 45 viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvm 100 (160)
|+-|+.+|-++|..+..+|.+++. ..+-||.++.++..+-|++..-+|++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~~------~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVEY------TYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHhh------eEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 456999999999999999987642 24568888999999999997766754
No 85
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=84.11 E-value=1.4 Score=30.03 Aligned_cols=42 Identities=29% Similarity=0.657 Sum_probs=30.6
Q ss_pred hhhccCCCChhhhhhHHHHHH---HHHhhhcceEEEEEeCCcccc
Q psy4160 45 VIRFGHDWDPTCMKMDEVLYS---IAEKVKNFAVIYLVDITKVPD 86 (160)
Q Consensus 45 viRFGrd~dp~Cm~mDevL~k---ia~kvknfavIYlvDi~~Vpd 86 (160)
+|-||-+|=+.|..|++.+.+ +.+.+++-.+...||.++-..
T Consensus 21 lv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~ 65 (82)
T PF13899_consen 21 LVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDP 65 (82)
T ss_dssp EEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHH
T ss_pred EEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCCh
Confidence 789999999999999998844 344344555556788765443
No 86
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=83.91 E-value=3.4 Score=23.35 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=33.9
Q ss_pred hhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccc
Q psy4160 46 IRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNK 89 (160)
Q Consensus 46 iRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~ 89 (160)
+-|...+.+.|.++-++|.++ +..+.-..+..+|+++.+...+
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 44 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEK 44 (69)
T ss_pred EEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhh
Confidence 457788889999999999888 4455667778889888887554
No 87
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=79.77 E-value=2.3 Score=30.08 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=22.3
Q ss_pred hhHHhhccCCCCCCcccHHHHHHhh
Q psy4160 7 IAPFLNKCDADDDHLITLKEWARCL 31 (160)
Q Consensus 7 ~~~Ff~~CD~~~D~~is~~EW~~C~ 31 (160)
.+.-|+.+|.++||.||..|-..++
T Consensus 12 l~~~F~~~D~d~~G~Is~~el~~~l 36 (96)
T smart00027 12 YEQIFRSLDKNQDGTVTGAQAKPIL 36 (96)
T ss_pred HHHHHHHhCCCCCCeEeHHHHHHHH
Confidence 4567899999999999999999985
No 88
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=79.65 E-value=1.4 Score=27.91 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.4
Q ss_pred hhHHhhccCCCCCCcccHHHHHHhh
Q psy4160 7 IAPFLNKCDADDDHLITLKEWARCL 31 (160)
Q Consensus 7 ~~~Ff~~CD~~~D~~is~~EW~~C~ 31 (160)
+..+|+.+|.++||.|+..||...+
T Consensus 35 ~~~i~~~~d~~~~g~i~~~ef~~~~ 59 (67)
T cd00052 35 LAQIWDLADTDKDGKLDKEEFAIAM 59 (67)
T ss_pred HHHHHHHhcCCCCCcCCHHHHHHHH
Confidence 5678999999999999999998875
No 89
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=74.38 E-value=6.7 Score=27.68 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=25.2
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhh
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVK 71 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvk 71 (160)
..||-|+..|-|.|..+...|.++++++.
T Consensus 22 ~~vl~F~~~~C~~C~~~~~~l~~~~~~~~ 50 (123)
T cd03011 22 PVLVYFWATWCPVCRFTSPTVNQLAADYP 50 (123)
T ss_pred EEEEEEECCcChhhhhhChHHHHHHhhCC
Confidence 35899999999999999999999988743
No 90
>KOG0911|consensus
Probab=74.00 E-value=2.1 Score=36.96 Aligned_cols=65 Identities=22% Similarity=0.329 Sum_probs=52.2
Q ss_pred hhhhhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCcccccccccccc-ccceeeeeeeCc
Q psy4160 40 DQCEDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELY-DPCTCMFFFRNK 106 (160)
Q Consensus 40 ~rc~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~-dP~tvmFFfrnk 106 (160)
...-.|+.|.-.|-.+|-+||+++.-+|+.. +.+..--.+.++.|+--.++++- .|..+ ||+..+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~-~~~~~~ 81 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFV-FFFLGE 81 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceee-eeecch
Confidence 3445589999999999999999999999988 56666778899999999999994 56665 554343
No 91
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=71.91 E-value=3 Score=29.86 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=22.9
Q ss_pred cchhHHhhccCCCCCCcccHHHHHHh
Q psy4160 5 HCIAPFLNKCDADDDHLITLKEWARC 30 (160)
Q Consensus 5 ~C~~~Ff~~CD~~~D~~is~~EW~~C 30 (160)
..+...++..|+|+||.||..||..-
T Consensus 53 ~~v~~i~~elD~n~dG~Idf~EF~~l 78 (93)
T cd05026 53 MLVDKIMNDLDSNKDNEVDFNEFVVL 78 (93)
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 35778899999999999999999774
No 92
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=71.73 E-value=28 Score=26.00 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=29.2
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhcc-eEEEEEeCC
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKNF-AVIYLVDIT 82 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvknf-avIYlvDi~ 82 (160)
.+|-|...|.|.|.+.-..|.+++.+.++- ..+..++.+
T Consensus 64 ~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d 103 (173)
T PRK03147 64 VFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVD 103 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 478999999999999888888888776542 344555554
No 93
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=71.71 E-value=8.8 Score=27.72 Aligned_cols=40 Identities=28% Similarity=0.527 Sum_probs=30.2
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhh----cceEEEEEeCCc
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVK----NFAVIYLVDITK 83 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvk----nfavIYlvDi~~ 83 (160)
-++|-|+-.|-+.|.++-..|.++.++.+ ++. |+.+.++.
T Consensus 20 ~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~-vv~is~d~ 63 (131)
T cd03009 20 TVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFE-IVFISWDR 63 (131)
T ss_pred EEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEE-EEEEECCC
Confidence 36899999999999998888888877764 344 55556553
No 94
>PTZ00183 centrin; Provisional
Probab=69.32 E-value=4.3 Score=29.60 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=21.9
Q ss_pred hHHhhccCCCCCCcccHHHHHHhhc
Q psy4160 8 APFLNKCDADDDHLITLKEWARCLE 32 (160)
Q Consensus 8 ~~Ff~~CD~~~D~~is~~EW~~C~~ 32 (160)
...|..+|++++|.||..|+..++.
T Consensus 20 ~~~F~~~D~~~~G~i~~~e~~~~l~ 44 (158)
T PTZ00183 20 REAFDLFDTDGSGTIDPKELKVAMR 44 (158)
T ss_pred HHHHHHhCCCCCCcccHHHHHHHHH
Confidence 4567899999999999999998865
No 95
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=68.53 E-value=26 Score=23.82 Aligned_cols=57 Identities=7% Similarity=0.011 Sum_probs=35.4
Q ss_pred hccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCcee
Q psy4160 47 RFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHI 108 (160)
Q Consensus 47 RFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm 108 (160)
.|--+|=|.|..|-.++.+++++...-+.+ +++++.+.-.+ |.+..=+|+++ +++-+
T Consensus 4 ~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~--~~v~~~~~a~~-~~v~~vPti~i--~G~~~ 60 (76)
T TIGR00412 4 QIYGTGCANCQMTEKNVKKAVEELGIDAEF--EKVTDMNEILE-AGVTATPGVAV--DGELV 60 (76)
T ss_pred EEECCCCcCHHHHHHHHHHHHHHcCCCeEE--EEeCCHHHHHH-cCCCcCCEEEE--CCEEE
Confidence 344488999999999999999876533444 55555544333 44543345433 66544
No 96
>COG1274 PckA Phosphoenolpyruvate carboxykinase (GTP) [Energy production and conversion]
Probab=67.35 E-value=4.1 Score=39.34 Aligned_cols=38 Identities=37% Similarity=0.497 Sum_probs=30.7
Q ss_pred EecCCCCCceeeeecCChhHHHHHHHHHhhccccCCeeEECCCC
Q psy4160 110 IDLGTGNNNKINWALEDKQEMIDIVETVYRGARKGRGLVVSPKD 153 (160)
Q Consensus 110 vD~GTgnnnKin~~~~~kqe~iDiie~iyrga~kGk~iv~sP~d 153 (160)
-|-|.-||.+ +.||+...+..+|||+||||.+-|.|.-
T Consensus 95 ~~agPtnNw~------~p~e~~~~m~~l~~G~MrGrtmyVvpf~ 132 (608)
T COG1274 95 EDAGPTNNWM------DPQEMRSEMNELFRGCMRGRTMYVVPFC 132 (608)
T ss_pred cccCCccCCC------CHHHHHHHHHHHHHhhhcCceEEEEeee
Confidence 3556666543 6799999999999999999999887753
No 97
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=66.46 E-value=10 Score=35.89 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=29.6
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhh--cceEEEE
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVK--NFAVIYL 78 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvk--nfavIYl 78 (160)
+||-|.-.|=|+|+++-..|.+++++.+ ++.+|.+
T Consensus 59 VvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~V 95 (521)
T PRK14018 59 TLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITV 95 (521)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEE
Confidence 4899999999999999999999999765 5666655
No 98
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=66.44 E-value=3.2 Score=31.12 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=24.3
Q ss_pred HHhhccCCCCCCcccHHHHHHhhcCChhhHHh
Q psy4160 9 PFLNKCDADDDHLITLKEWARCLELNEDEIED 40 (160)
Q Consensus 9 ~Ff~~CD~~~D~~is~~EW~~C~~L~e~~~d~ 40 (160)
.-++-||.++||.++..||+-+.+|-..-+.+
T Consensus 47 ~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~ 78 (104)
T PF12763_consen 47 QIWNLADIDNDGKLDFEEFAIAMHLINRKLNG 78 (104)
T ss_dssp HHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcC
Confidence 45677999999999999999998776544433
No 99
>KOG1955|consensus
Probab=64.66 E-value=3.9 Score=39.76 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.7
Q ss_pred hhccCCCCCCcccHHHHHHhhcCC
Q psy4160 11 LNKCDADDDHLITLKEWARCLELN 34 (160)
Q Consensus 11 f~~CD~~~D~~is~~EW~~C~~L~ 34 (160)
.+-||.++||-+|+.|+|.-|||.
T Consensus 271 WeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 271 WELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HhhcccCccccccHHHHHhhHhhe
Confidence 466999999999999999999984
No 100
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=64.60 E-value=6.1 Score=28.44 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=20.9
Q ss_pred hhHHhhccCCCCCCcccHHHHHHh
Q psy4160 7 IAPFLNKCDADDDHLITLKEWARC 30 (160)
Q Consensus 7 ~~~Ff~~CD~~~D~~is~~EW~~C 30 (160)
+...++..|.|+||+|+-.|+..-
T Consensus 54 ~~~ll~~~D~d~DG~I~f~EF~~l 77 (89)
T cd05023 54 LDRMMKKLDLNSDGQLDFQEFLNL 77 (89)
T ss_pred HHHHHHHcCCCCCCcCcHHHHHHH
Confidence 456889999999999999999764
No 101
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=64.43 E-value=6 Score=27.91 Aligned_cols=27 Identities=11% Similarity=0.332 Sum_probs=23.4
Q ss_pred cchhHHhhccCCCCCCcccHHHHHHhh
Q psy4160 5 HCIAPFLNKCDADDDHLITLKEWARCL 31 (160)
Q Consensus 5 ~C~~~Ff~~CD~~~D~~is~~EW~~C~ 31 (160)
.-+...++..|.++||.|+..||...+
T Consensus 51 ~ei~~~~~~~D~~~dg~I~f~eF~~l~ 77 (94)
T cd05031 51 MAVDKIMKDLDQNRDGKVNFEEFVSLV 77 (94)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 457788999999999999999998763
No 102
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=63.66 E-value=4.4 Score=27.56 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=19.5
Q ss_pred chhHHhhccCCCCCCcccHHHHHH
Q psy4160 6 CIAPFLNKCDADDDHLITLKEWAR 29 (160)
Q Consensus 6 C~~~Ff~~CD~~~D~~is~~EW~~ 29 (160)
=+.+.|+.||+.++|.+.-.|.-.
T Consensus 22 yA~~LFq~~D~s~~g~Le~~Ef~~ 45 (51)
T PF14788_consen 22 YARQLFQECDKSQSGRLEGEEFEE 45 (51)
T ss_dssp HHHHHHHHH-SSSSSEBEHHHHHH
T ss_pred HHHHHHHHhcccCCCCccHHHHHH
Confidence 356789999999999999988755
No 103
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=62.77 E-value=6.7 Score=27.49 Aligned_cols=27 Identities=11% Similarity=0.314 Sum_probs=23.9
Q ss_pred ccchhHHhhccCCCCCCcccHHHHHHh
Q psy4160 4 EHCIAPFLNKCDADDDHLITLKEWARC 30 (160)
Q Consensus 4 E~C~~~Ff~~CD~~~D~~is~~EW~~C 30 (160)
+.-++..|+..|+++||.|+..|+...
T Consensus 51 ~~~v~~i~~~~D~d~~G~I~f~eF~~l 77 (92)
T cd05025 51 ADAVDKIMKELDENGDGEVDFQEFVVL 77 (92)
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHH
Confidence 456788999999999999999999875
No 104
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=61.32 E-value=29 Score=22.73 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=30.9
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhh-cceEEEEEeCCcc
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVK-NFAVIYLVDITKV 84 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvk-nfavIYlvDi~~V 84 (160)
.++-|+..|-+.|...=..|.++..+.+ +-..++.|+++.-
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred EEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 4777888899999987777777777653 3366788888874
No 105
>KOG0027|consensus
Probab=61.21 E-value=14 Score=27.96 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.3
Q ss_pred hhHHhhccCCCCCCcccHHHHHHhh
Q psy4160 7 IAPFLNKCDADDDHLITLKEWARCL 31 (160)
Q Consensus 7 ~~~Ff~~CD~~~D~~is~~EW~~C~ 31 (160)
.+.-|+.+|.+.||.||..|-..|+
T Consensus 10 l~~~F~~fD~d~~G~i~~~el~~~l 34 (151)
T KOG0027|consen 10 LKEAFQLFDKDGDGKISVEELGAVL 34 (151)
T ss_pred HHHHHHHHCCCCCCcccHHHHHHHH
Confidence 3567999999999999999999985
No 106
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=60.33 E-value=12 Score=28.28 Aligned_cols=33 Identities=27% Similarity=0.133 Sum_probs=29.4
Q ss_pred CCCceeeeecCChhHHHHHHHHHhhccccCCeeE
Q psy4160 115 GNNNKINWALEDKQEMIDIVETVYRGARKGRGLV 148 (160)
Q Consensus 115 gnnnKin~~~~~kqe~iDiie~iyrga~kGk~iv 148 (160)
+. .|+.+.+.+.||+-++++..++-|..|||-|
T Consensus 122 ~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv 154 (160)
T cd07034 122 GH-PWPVLAPSSVQEAFDLALEAFELAEKYRLPV 154 (160)
T ss_pred CC-CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCE
Confidence 44 8999999999999999999999999998744
No 107
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=59.94 E-value=42 Score=25.90 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=26.5
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeC
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDI 81 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi 81 (160)
-.+|-|.-+|-|.|+++=..|.+.+++ ++. +..|+.
T Consensus 65 ~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~-vi~V~~ 100 (173)
T TIGR00385 65 PVLLNVWASWCPPCRAEHPYLNELAKD--GLP-IVGVDY 100 (173)
T ss_pred EEEEEEECCcCHHHHHHHHHHHHHHHc--CCE-EEEEEC
Confidence 358999999999999987788877763 443 344454
No 108
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=59.77 E-value=8 Score=27.69 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=21.6
Q ss_pred hhHHhhccCCCCCCcccHHHHHHh
Q psy4160 7 IAPFLNKCDADDDHLITLKEWARC 30 (160)
Q Consensus 7 ~~~Ff~~CD~~~D~~is~~EW~~C 30 (160)
+..+++..|.|+||+|+..||...
T Consensus 53 v~~~i~~~D~n~dG~v~f~eF~~l 76 (88)
T cd05027 53 VDKVMETLDSDGDGECDFQEFMAF 76 (88)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHH
Confidence 567899999999999999999875
No 109
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=59.40 E-value=17 Score=31.28 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=39.2
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHh--hhcceEEEEEeCCccccccccccccccceeeeeeeCceeE
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEK--VKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIM 109 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~k--vknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~ 109 (160)
+|+.|=++.-+.|..|+..|..+|.+ --+|+-|=. +..| +..-|..-.-+|+ +.||+--+.
T Consensus 149 VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a---~~~~-~~~~f~~~~LPtl-lvYk~G~l~ 211 (265)
T PF02114_consen 149 VVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRA---SKCP-ASENFPDKNLPTL-LVYKNGDLI 211 (265)
T ss_dssp EEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEE---CGCC-TTTTS-TTC-SEE-EEEETTEEE
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEeh---hccC-cccCCcccCCCEE-EEEECCEEE
Confidence 58999999999999999999999997 223554433 3333 4444444444665 566665544
No 110
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=58.30 E-value=8.3 Score=27.29 Aligned_cols=28 Identities=14% Similarity=0.367 Sum_probs=23.8
Q ss_pred ccchhHHhhccCCCCCCcccHHHHHHhh
Q psy4160 4 EHCIAPFLNKCDADDDHLITLKEWARCL 31 (160)
Q Consensus 4 E~C~~~Ff~~CD~~~D~~is~~EW~~C~ 31 (160)
+.-+...|+..|.++||.|+.+||...+
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~ 77 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLV 77 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 4456778999999999999999998763
No 111
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=58.09 E-value=8.2 Score=26.85 Aligned_cols=52 Identities=23% Similarity=0.208 Sum_probs=34.5
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhh-cceEEEEE--eCCcccccccccccc
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVK-NFAVIYLV--DITKVPDFNKMYELY 94 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvk-nfavIYlv--Di~~Vpdfn~myeL~ 94 (160)
-.||-|...|=|.|.++=..|.+++++.+ +..++.+. +.+++..|.+-+.+.
T Consensus 23 ~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~ 77 (114)
T cd02967 23 PTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLE 77 (114)
T ss_pred eEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCC
Confidence 35788999999999998778888877643 34444332 334555566656663
No 112
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=57.52 E-value=17 Score=25.90 Aligned_cols=59 Identities=12% Similarity=0.008 Sum_probs=45.5
Q ss_pred hhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCc
Q psy4160 45 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNK 106 (160)
Q Consensus 45 viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnk 106 (160)
+.-|.-++=+.|-.+-+++.+++++-.+ ..+..+|+++.|+.-+-|.+.--+|+ +.+++
T Consensus 16 i~~F~~~~C~~C~~~~~~~~~l~~~~~~-i~~~~vd~~~~~e~a~~~~V~~vPt~--vidG~ 74 (89)
T cd03026 16 FETYVSLSCHNCPDVVQALNLMAVLNPN-IEHEMIDGALFQDEVEERGIMSVPAI--FLNGE 74 (89)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHCCC-ceEEEEEhHhCHHHHHHcCCccCCEE--EECCE
Confidence 5667778889999999999999875433 57799999999998888888655553 33554
No 113
>PRK04210 phosphoenolpyruvate carboxykinase; Provisional
Probab=57.37 E-value=9.6 Score=37.08 Aligned_cols=38 Identities=32% Similarity=0.540 Sum_probs=30.4
Q ss_pred EecCCCCCceeeeecCChhHHHHHHHHHhhccccCCeeEECCCC
Q psy4160 110 IDLGTGNNNKINWALEDKQEMIDIVETVYRGARKGRGLVVSPKD 153 (160)
Q Consensus 110 vD~GTgnnnKin~~~~~kqe~iDiie~iyrga~kGk~iv~sP~d 153 (160)
-|.|.-|| --+.+|+...+..+|+|+||||.+.|-|.-
T Consensus 88 ~dagp~nn------w~~p~e~~~~l~~lf~G~M~GRTMyVipfs 125 (601)
T PRK04210 88 EDAGPTNN------WMDPAEMRETLKGLFKGCMRGRTMYVVPFS 125 (601)
T ss_pred hhcCCccC------cCCHHHHHHHHHHhcCCccCCCeEEEeeee
Confidence 35666554 246789999999999999999999988753
No 114
>PTZ00183 centrin; Provisional
Probab=57.26 E-value=13 Score=27.05 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=15.3
Q ss_pred HHhhccCCCCCCcccHHHHHHh
Q psy4160 9 PFLNKCDADDDHLITLKEWARC 30 (160)
Q Consensus 9 ~Ff~~CD~~~D~~is~~EW~~C 30 (160)
.-|+.+|.+++|.||..|+..-
T Consensus 94 ~~F~~~D~~~~G~i~~~e~~~~ 115 (158)
T PTZ00183 94 KAFRLFDDDKTGKISLKNLKRV 115 (158)
T ss_pred HHHHHhCCCCCCcCcHHHHHHH
Confidence 4467777777777777777654
No 115
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=56.19 E-value=19 Score=23.56 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=24.6
Q ss_pred hhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCC
Q psy4160 45 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDIT 82 (160)
Q Consensus 45 viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~ 82 (160)
|+=|+++|=|.|.++-.+|.+.. +..-..++-+|.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~ 36 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQL 36 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCC
Confidence 34589999999999998888875 3221234455544
No 116
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=55.85 E-value=32 Score=24.53 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=21.8
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHh
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEK 69 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~k 69 (160)
.||-|.-.|-|.|.++=..|.+.+++
T Consensus 28 vvv~F~a~~C~~C~~~~~~l~~l~~~ 53 (127)
T cd03010 28 YLLNVWASWCAPCREEHPVLMALARQ 53 (127)
T ss_pred EEEEEEcCcCHHHHHHHHHHHHHHHh
Confidence 58999999999999877777777765
No 117
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=55.25 E-value=29 Score=25.29 Aligned_cols=42 Identities=24% Similarity=0.356 Sum_probs=30.7
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhc---ceEEEEEeCCcc
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKN---FAVIYLVDITKV 84 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvkn---favIYlvDi~~V 84 (160)
.++|-|+-.|-+.|.++=..|.+++.+.++ -..|..|++++.
T Consensus 19 ~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~ 63 (132)
T cd02964 19 TVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRS 63 (132)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCC
Confidence 358999999999999987788888776653 234455666654
No 118
>PTZ00184 calmodulin; Provisional
Probab=55.12 E-value=11 Score=26.88 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.8
Q ss_pred hhHHhhccCCCCCCcccHHHHHHhh
Q psy4160 7 IAPFLNKCDADDDHLITLKEWARCL 31 (160)
Q Consensus 7 ~~~Ff~~CD~~~D~~is~~EW~~C~ 31 (160)
.+..|...|++++|.||..|+...+
T Consensus 13 ~~~~F~~~D~~~~G~i~~~e~~~~l 37 (149)
T PTZ00184 13 FKEAFSLFDKDGDGTITTKELGTVM 37 (149)
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 3567899999999999999998865
No 119
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=54.03 E-value=11 Score=29.67 Aligned_cols=60 Identities=20% Similarity=0.336 Sum_probs=39.0
Q ss_pred HhhccCCCCCCc----ccHHHHHHhhcCChhhHHhhhhhhhhccCCCChhhhhhHHHHHHHHHhhh---------cceEE
Q psy4160 10 FLNKCDADDDHL----ITLKEWARCLELNEDEIEDQCEDVIRFGHDWDPTCMKMDEVLYSIAEKVK---------NFAVI 76 (160)
Q Consensus 10 Ff~~CD~~~D~~----is~~EW~~C~~L~e~~~d~rc~~viRFGrd~dp~Cm~mDevL~kia~kvk---------nfavI 76 (160)
|+-.|..|+||+ +|+..+.- -.++|.|+-.|-|+|.+.=-.|.++..+++ ++.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~ls~~kg------------k~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV 69 (146)
T cd03008 2 VLIKNNSDRDELDTEREIVARLEN------------RVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALV 69 (146)
T ss_pred eeeccCccccchhcccccHHHhCC------------CEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEE
Confidence 455677788874 34432210 146899999999999997777777665443 45665
Q ss_pred EEEeCC
Q psy4160 77 YLVDIT 82 (160)
Q Consensus 77 YlvDi~ 82 (160)
++ +.+
T Consensus 70 ~V-s~D 74 (146)
T cd03008 70 YV-SMD 74 (146)
T ss_pred EE-ECC
Confidence 54 444
No 120
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=52.05 E-value=22 Score=28.49 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhcceEEEEEeCCccccccccccc----cccceeeeeeeCceeEEecCC-C--------------CCceee
Q psy4160 61 EVLYSIAEKVKNFAVIYLVDITKVPDFNKMYEL----YDPCTCMFFFRNKHIMIDLGT-G--------------NNNKIN 121 (160)
Q Consensus 61 evL~kia~kvknfavIYlvDi~~Vpdfn~myeL----~dP~tvmFFfrnkHm~vD~GT-g--------------nnnKin 121 (160)
+++.++.+.++++..+|++|.+-++. +++=+| .+ -+.|++.+|+=|+.-+|. | +++-+.
T Consensus 5 ~~v~el~e~l~~~~~v~v~~~~gl~~-~ql~~lR~~lr~-~~~~~v~KNtL~~~Al~~~~~~~~~~~~L~~~l~G~~~li 82 (175)
T cd05795 5 EYVEKLTELLKSYPKVLIVDADNVGS-KQLQKIRRSLRG-KAEILMGKNTLIRRALRNLGDENPELEKLLPYLKGNVGFI 82 (175)
T ss_pred HHHHHHHHHHHhCCEEEEEEecCCCh-HHHHHHHHHhhC-CCEEEEechHHHHHHHHhcccccccHHHHHHHhcCCEEEE
Confidence 57888999999999999999988765 344444 22 356899999999997764 2 123344
Q ss_pred eecCChhHHHHHHHHHhhc
Q psy4160 122 WALEDKQEMIDIVETVYRG 140 (160)
Q Consensus 122 ~~~~~kqe~iDiie~iyrg 140 (160)
|.-+|..+...+++.--+.
T Consensus 83 Ft~~dp~~v~k~l~~~~~~ 101 (175)
T cd05795 83 FTNGDPFEIRKILEENKVP 101 (175)
T ss_pred EECCCHHHHHHHHHHcCCc
Confidence 5556677777777664443
No 121
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=50.32 E-value=12 Score=26.30 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=20.0
Q ss_pred hHHhhccCC-CC-CCcccHHHHHHhh
Q psy4160 8 APFLNKCDA-DD-DHLITLKEWARCL 31 (160)
Q Consensus 8 ~~Ff~~CD~-~~-D~~is~~EW~~C~ 31 (160)
..-|+..|. ++ ||.||.+|+..++
T Consensus 11 ~~~F~~~D~~dg~dG~Is~~El~~~l 36 (94)
T cd05031 11 ILTFHRYAGKDGDKNTLSRKELKKLM 36 (94)
T ss_pred HHHHHHHhccCCCCCeECHHHHHHHH
Confidence 445788887 87 6999999999985
No 122
>KOG0036|consensus
Probab=49.79 E-value=10 Score=35.82 Aligned_cols=83 Identities=22% Similarity=0.303 Sum_probs=0.0
Q ss_pred hhHHhhccCCCCCCcccHHH-HHHhhcCChhhHHhhhhhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccc
Q psy4160 7 IAPFLNKCDADDDHLITLKE-WARCLELNEDEIEDQCEDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVP 85 (160)
Q Consensus 7 ~~~Ff~~CD~~~D~~is~~E-W~~C~~L~e~~~d~rc~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vp 85 (160)
...+|++-|.+.||+|..+| |.+| ++-+-. .-||-+.|+-|.+-+=-. -.+|..|-.
T Consensus 84 l~~~F~~iD~~hdG~i~~~Ei~~~l-------------------~~~gi~--l~de~~~k~~e~~d~~g~-~~I~~~e~r 141 (463)
T KOG0036|consen 84 LYRIFQSIDLEHDGKIDPNEIWRYL-------------------KDLGIQ--LSDEKAAKFFEHMDKDGK-ATIDLEEWR 141 (463)
T ss_pred HHHHHhhhccccCCccCHHHHHHHH-------------------HHhCCc--cCHHHHHHHHHHhccCCC-eeeccHHHH
Q ss_pred cccccccccccceeeeeeeCceeE-EecC
Q psy4160 86 DFNKMYELYDPCTCMFFFRNKHIM-IDLG 113 (160)
Q Consensus 86 dfn~myeL~dP~tvmFFfrnkHm~-vD~G 113 (160)
||-..|...+=-.+.-|+ +|+. +|+|
T Consensus 142 d~~ll~p~s~i~di~~~W--~h~~~idig 168 (463)
T KOG0036|consen 142 DHLLLYPESDLEDIYDFW--RHVLLIDIG 168 (463)
T ss_pred hhhhcCChhHHHHHHHhh--hhheEEEcc
No 123
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=49.21 E-value=24 Score=26.96 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=44.7
Q ss_pred hhcCChhhHHhh----hhhhhhccCCCChhhhhhHHHHHHHHHhhhc---ceEEEEEeCC-----cccccccccccc--c
Q psy4160 30 CLELNEDEIEDQ----CEDVIRFGHDWDPTCMKMDEVLYSIAEKVKN---FAVIYLVDIT-----KVPDFNKMYELY--D 95 (160)
Q Consensus 30 C~~L~e~~~d~r----c~~viRFGrd~dp~Cm~mDevL~kia~kvkn---favIYlvDi~-----~Vpdfn~myeL~--d 95 (160)
|..|.+..++.- --+++.|--.| |-|-+. +...++|++... -.+|--||++ +=.+..+=|.+. .
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~-Pwc~k~-~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~g 80 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAY-PYGEKH-EAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKES 80 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCC-CCCCCh-HHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCC
Confidence 344555544442 12478899977 777753 444455544322 2568889994 446688889998 7
Q ss_pred cceeeeee
Q psy4160 96 PCTCMFFF 103 (160)
Q Consensus 96 P~tvmFFf 103 (160)
-+|+.||-
T Consensus 81 yPTl~lF~ 88 (116)
T cd03007 81 YPVIYLFH 88 (116)
T ss_pred CCEEEEEe
Confidence 88975554
No 124
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=49.11 E-value=15 Score=25.14 Aligned_cols=25 Identities=12% Similarity=0.353 Sum_probs=21.7
Q ss_pred hhHHhhccCCCCCCcccHHHHHHhh
Q psy4160 7 IAPFLNKCDADDDHLITLKEWARCL 31 (160)
Q Consensus 7 ~~~Ff~~CD~~~D~~is~~EW~~C~ 31 (160)
+...++..|.+++|.|+..||...+
T Consensus 53 i~~i~~~~d~~~~g~I~f~eF~~~~ 77 (88)
T cd00213 53 VDKIMKDLDVNKDGKVDFQEFLVLI 77 (88)
T ss_pred HHHHHHHhccCCCCcCcHHHHHHHH
Confidence 5668889999999999999998763
No 125
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=48.26 E-value=16 Score=26.50 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=20.3
Q ss_pred hhHHhhccCCCCCCcccHHHHHHh
Q psy4160 7 IAPFLNKCDADDDHLITLKEWARC 30 (160)
Q Consensus 7 ~~~Ff~~CD~~~D~~is~~EW~~C 30 (160)
+...++.-|+|.||+|+..|+...
T Consensus 49 v~~mi~~~D~d~DG~I~F~EF~~l 72 (89)
T cd05022 49 LEEKMKNLDVNQDSKLSFEEFWEL 72 (89)
T ss_pred HHHHHHHhCCCCCCCCcHHHHHHH
Confidence 356788899999999999999765
No 126
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=48.18 E-value=31 Score=27.27 Aligned_cols=79 Identities=20% Similarity=0.418 Sum_probs=55.3
Q ss_pred HHHHHHHHhhhcceEEEEEeCCccccccccccc---cccceeeeeeeCceeEEecCC-C----------------CCcee
Q psy4160 61 EVLYSIAEKVKNFAVIYLVDITKVPDFNKMYEL---YDPCTCMFFFRNKHIMIDLGT-G----------------NNNKI 120 (160)
Q Consensus 61 evL~kia~kvknfavIYlvDi~~Vpdfn~myeL---~dP~tvmFFfrnkHm~vD~GT-g----------------nnnKi 120 (160)
+.+.++.+.++++-.+|+||.+-++. ++|=+| .-+. .+++-+|+=|+.-+|. + +++-+
T Consensus 5 ~~v~~l~e~l~~y~~v~iv~~~gl~~-~ql~~iR~~lr~~-~~~v~KNtl~~~Al~~~~~~~~~~~~~~L~~~l~G~~~l 82 (163)
T cd05796 5 KLVENIREAVDKYKYIYVFSVDNMRN-NKLKDIRQEWKDS-RFFFGKNKVMQVALGRTPEDEYKPNLHKLSKYLKGQVGL 82 (163)
T ss_pred HHHHHHHHHHHhCCEEEEEEecCCCH-HHHHHHHHHhcCC-EEEEEchHHHHHHHhhCccccccccHHHHHHHhCCCEEE
Confidence 57888999999999999999988775 344444 2234 6789999999987763 1 12234
Q ss_pred eeecCChhHHHHHHHHHhhcc
Q psy4160 121 NWALEDKQEMIDIVETVYRGA 141 (160)
Q Consensus 121 n~~~~~kqe~iDiie~iyrga 141 (160)
.|.=+|..+..++++.--+.+
T Consensus 83 ift~~dp~~v~k~l~~~~~~~ 103 (163)
T cd05796 83 LFTNEPPEEVIEYFDSYSEPD 103 (163)
T ss_pred EEECCCHHHHHHHHHHcCCcc
Confidence 455567777777777654443
No 127
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=47.84 E-value=16 Score=27.16 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=21.1
Q ss_pred hhHHhhccCCCCCCcccHHHHHHh
Q psy4160 7 IAPFLNKCDADDDHLITLKEWARC 30 (160)
Q Consensus 7 ~~~Ff~~CD~~~D~~is~~EW~~C 30 (160)
+...+++-|.|+||.|+..|+...
T Consensus 50 vd~im~~LD~n~Dg~vdF~EF~~L 73 (91)
T cd05024 50 VDKIMKDLDDCRDGKVGFQSFFSL 73 (91)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHH
Confidence 456889999999999999999875
No 128
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=47.42 E-value=1.1e+02 Score=23.82 Aligned_cols=84 Identities=14% Similarity=0.151 Sum_probs=47.5
Q ss_pred hhhccCCCChhhhhhHHHHHHH---HHhh-hcceEEEE-EeCCc-cccccccccccccceeeeeeeCceeEEe-cCCCCC
Q psy4160 45 VIRFGHDWDPTCMKMDEVLYSI---AEKV-KNFAVIYL-VDITK-VPDFNKMYELYDPCTCMFFFRNKHIMID-LGTGNN 117 (160)
Q Consensus 45 viRFGrd~dp~Cm~mDevL~ki---a~kv-knfavIYl-vDi~~-Vpdfn~myeL~dP~tvmFFfrnkHm~vD-~GTgnn 117 (160)
.|-||.+|=+.|.+||+...+- ++.+ ++|..+.+ +|.++ -+.-+.. +- +|++|+=.+.-+.-+ .|--.|
T Consensus 27 mv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g~---~v-PtivFld~~g~vi~~i~Gy~~~ 102 (130)
T cd02960 27 MVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDGQ---YV-PRIMFVDPSLTVRADITGRYSN 102 (130)
T ss_pred EEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccCc---cc-CeEEEECCCCCCcccccccccC
Confidence 5669999999999999987643 3445 35654433 23221 1211222 33 454344222222222 788888
Q ss_pred ceeeeecCChhHHHH
Q psy4160 118 NKINWALEDKQEMID 132 (160)
Q Consensus 118 nKin~~~~~kqe~iD 132 (160)
.+-.+-..|-+.+++
T Consensus 103 ~~~~y~~~~~~~~~~ 117 (130)
T cd02960 103 RLYTYEPADIPLLIE 117 (130)
T ss_pred ccceeCcCcHHHHHH
Confidence 888887666554443
No 129
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=47.42 E-value=27 Score=23.52 Aligned_cols=47 Identities=21% Similarity=0.481 Sum_probs=31.9
Q ss_pred hhhccCCCChhhhhhHHHHHHHHHhhh---cceEEEEEeCCc-ccccccccc
Q psy4160 45 VIRFGHDWDPTCMKMDEVLYSIAEKVK---NFAVIYLVDITK-VPDFNKMYE 92 (160)
Q Consensus 45 viRFGrd~dp~Cm~mDevL~kia~kvk---nfavIYlvDi~~-Vpdfn~mye 92 (160)
+|-|+-.|.+.|.+.=+.|.++.++.+ ++-.|+ |.+++ -+++.+...
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~-Vs~d~~~~~~~~~~~ 55 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVF-VSLDEDEEEWKKFLK 55 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEE-EE-SSSHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEE-EEeCCCHHHHHHHHH
Confidence 577999999999998888888888888 555555 44443 344444443
No 130
>cd00819 PEPCK_GTP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the GTP-dependent group.
Probab=46.70 E-value=17 Score=35.23 Aligned_cols=37 Identities=32% Similarity=0.555 Sum_probs=30.2
Q ss_pred ecCCCCCceeeeecCChhHHHHHHHHHhhccccCCeeEECCCC
Q psy4160 111 DLGTGNNNKINWALEDKQEMIDIVETVYRGARKGRGLVVSPKD 153 (160)
Q Consensus 111 D~GTgnnnKin~~~~~kqe~iDiie~iyrga~kGk~iv~sP~d 153 (160)
|.|.-|| --+.+|+...+..+|+|.||||.+-|-|.-
T Consensus 75 dagp~nn------w~~p~e~~~~l~~lf~G~M~GRTMYVipfs 111 (579)
T cd00819 75 DAGPTNN------WMDPEEMKAELKELFKGCMRGRTMYVIPFS 111 (579)
T ss_pred ccCCccc------cCCHHHHHHHHHhhCCcccCCCeEEEEeee
Confidence 5666665 236789999999999999999999988753
No 131
>KOG0191|consensus
Probab=46.39 E-value=27 Score=30.59 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=60.4
Q ss_pred hhhhhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCceeEEecCC
Q psy4160 41 QCEDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGT 114 (160)
Q Consensus 41 rc~~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GT 114 (160)
....++-|=-.|-..|..+=....+++..++....+--||.++-++..+.|++.-.+|+.+|..+ ---+++..
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~-~~~~~~~~ 119 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG-KKPIDYSG 119 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC-CceeeccC
Confidence 34457888888999999999999999998888888889999999999999999999998888766 22345433
No 132
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=45.90 E-value=85 Score=21.17 Aligned_cols=71 Identities=18% Similarity=0.328 Sum_probs=43.9
Q ss_pred ccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCCCceeeeecCCh
Q psy4160 48 FGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINWALEDK 127 (160)
Q Consensus 48 FGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnnnKin~~~~~k 127 (160)
||.. =|.|-++-+.+..++.+. + ..+=++|+++.|+. .=|.+..-+|+ +-+++ -++.+.+.++
T Consensus 6 ~~~~-C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~~~-~~ygv~~vPal--vIng~-----------~~~~G~~p~~ 68 (76)
T PF13192_consen 6 FSPG-CPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFEEI-EKYGVMSVPAL--VINGK-----------VVFVGRVPSK 68 (76)
T ss_dssp ECSS-CTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHHHH-HHTT-SSSSEE--EETTE-----------EEEESS--HH
T ss_pred eCCC-CCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHHHH-HHcCCCCCCEE--EECCE-----------EEEEecCCCH
Confidence 4444 688998888888887765 3 33345666555555 55777666664 33322 3456668899
Q ss_pred hHHHHHHH
Q psy4160 128 QEMIDIVE 135 (160)
Q Consensus 128 qe~iDiie 135 (160)
+|+..+||
T Consensus 69 ~el~~~l~ 76 (76)
T PF13192_consen 69 EELKELLE 76 (76)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99988876
No 133
>PTZ00184 calmodulin; Provisional
Probab=43.13 E-value=20 Score=25.54 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=19.0
Q ss_pred chhHHhhccCCCCCCcccHHHHHHhh
Q psy4160 6 CIAPFLNKCDADDDHLITLKEWARCL 31 (160)
Q Consensus 6 C~~~Ff~~CD~~~D~~is~~EW~~C~ 31 (160)
..+.-|+.+|.+++|.||..|+...+
T Consensus 85 ~~~~~F~~~D~~~~g~i~~~e~~~~l 110 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGFISAAELRHVM 110 (149)
T ss_pred HHHHHHHhhCCCCCCeEeHHHHHHHH
Confidence 45567788888888888888876653
No 134
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=42.08 E-value=15 Score=28.04 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.8
Q ss_pred HhhccCCCCCCcccHHHHHHh
Q psy4160 10 FLNKCDADDDHLITLKEWARC 30 (160)
Q Consensus 10 Ff~~CD~~~D~~is~~EW~~C 30 (160)
=|..-|+|+||.||..|-...
T Consensus 53 ~F~~lD~d~DG~Ls~~EL~~~ 73 (116)
T cd00252 53 MFNQLDGNYDGKLSHHELAPI 73 (116)
T ss_pred HHHHHCCCCCCcCCHHHHHHH
Confidence 478889999999999999875
No 135
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=41.77 E-value=17 Score=27.92 Aligned_cols=29 Identities=31% Similarity=0.588 Sum_probs=22.7
Q ss_pred ccccccccccccccceeeeeeeCceeEEe
Q psy4160 83 KVPDFNKMYELYDPCTCMFFFRNKHIMID 111 (160)
Q Consensus 83 ~Vpdfn~myeL~dP~tvmFFfrnkHm~vD 111 (160)
-.|||+..|.-.+-.--..|||-+|++-|
T Consensus 45 G~pdfsEa~~~~~~~~qVLfYrT~~~~sD 73 (102)
T PF11399_consen 45 GTPDFSEAYRKDDKHVQVLFYRTQHKKSD 73 (102)
T ss_pred CCCCchhheeeCCcEEEEEEEEEeeEcCC
Confidence 36999998888654444588999999988
No 136
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=40.43 E-value=1.8e+02 Score=22.83 Aligned_cols=37 Identities=19% Similarity=0.392 Sum_probs=29.1
Q ss_pred hhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCc
Q psy4160 45 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITK 83 (160)
Q Consensus 45 viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~ 83 (160)
+|-|+..|-|+|.++--.|.+.+++- ++.+ ..|++++
T Consensus 54 lvnFWAsWCppCr~e~P~L~~l~~~~-~~~V-i~Vs~d~ 90 (153)
T TIGR02738 54 LVFFYQSTCPYCHQFAPVLKRFSQQF-GLPV-YAFSLDG 90 (153)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHc-CCcE-EEEEeCC
Confidence 89999999999999999999998864 3444 3445554
No 137
>KOG0027|consensus
Probab=38.88 E-value=27 Score=26.49 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=25.4
Q ss_pred hhHHhhccCCCCCCcccHHHHHHhhcCChh
Q psy4160 7 IAPFLNKCDADDDHLITLKEWARCLELNED 36 (160)
Q Consensus 7 ~~~Ff~~CD~~~D~~is~~EW~~C~~L~e~ 36 (160)
....++..|++.||.|+..|+..++.-...
T Consensus 46 l~~~~~~~D~dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 46 LRDLIKEIDLDGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHhhhc
Confidence 467889999999999999999999764443
No 138
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=36.81 E-value=42 Score=20.59 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=27.7
Q ss_pred hhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCcccc-ccccccc
Q psy4160 45 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPD-FNKMYEL 93 (160)
Q Consensus 45 viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpd-fn~myeL 93 (160)
|+=|++++-|.|.+.=..|.+.. ..+-.+|+++-++ ...+-++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~ 45 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKEL 45 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHH
Confidence 34588999999999655555543 3345778887764 3444433
No 139
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=35.77 E-value=32 Score=22.03 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=27.1
Q ss_pred hhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCcccccccc
Q psy4160 46 IRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKM 90 (160)
Q Consensus 46 iRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~m 90 (160)
.=||.+|.|.|.++-..|.+... ....+|+++-+.-...
T Consensus 3 ~ly~~~~C~~C~~~~~~L~~~~~------~~~~idi~~~~~~~~~ 41 (77)
T TIGR02200 3 TVYGTTWCGYCAQLMRTLDKLGA------AYEWVDIEEDEGAADR 41 (77)
T ss_pred EEEECCCChhHHHHHHHHHHcCC------ceEEEeCcCCHhHHHH
Confidence 34899999999998887765532 1246888776654444
No 140
>KOG4122|consensus
Probab=35.54 E-value=34 Score=22.26 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=22.0
Q ss_pred HHHHHHhhccccCCeeEECCCCcccccC
Q psy4160 132 DIVETVYRGARKGRGLVVSPKDYSTKYR 159 (160)
Q Consensus 132 Diie~iyrga~kGk~iv~sP~dy~~~~~ 159 (160)
...+--|-=-++||+.|++|..+.+++|
T Consensus 9 k~C~~Cy~VrRrgR~yViC~~~prHKqr 36 (38)
T KOG4122|consen 9 KRCKDCYLVRRRGRVYVICKTHPRHKQR 36 (38)
T ss_pred HhhhhceEEEEcccEEEEcCCCcchhhh
Confidence 3445556667899999999999988876
No 141
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=34.48 E-value=2.4e+02 Score=26.17 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=56.3
Q ss_pred hccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccceeeeeeeCceeEEecCCCCCceeeee-cC
Q psy4160 47 RFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINWA-LE 125 (160)
Q Consensus 47 RFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnnnKin~~-~~ 125 (160)
=|-.+.++.|..+-+.|..+++ ++.-..+-..|..+=++--+-|.+..-+++.++ | +.|+...|.|. +.
T Consensus 372 ~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~--------~-~~~~~~~i~f~g~P 441 (555)
T TIGR03143 372 LFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNRGEEPESETLPKITKLPTVALL--------D-DDGNYTGLKFHGVP 441 (555)
T ss_pred EEECCCchhhHHHHHHHHHHHh-cCCcEEEEEeccccchhhHhhcCCCcCCEEEEE--------e-CCCcccceEEEecC
Confidence 3544555689888888888886 444444444554332222233334222343231 1 23444568886 88
Q ss_pred ChhHHHHHHHHHhhccccCCee
Q psy4160 126 DKQEMIDIVETVYRGARKGRGL 147 (160)
Q Consensus 126 ~kqe~iDiie~iyrga~kGk~i 147 (160)
.=.||=.+|++|+..+..|.+|
T Consensus 442 ~G~Ef~s~i~~i~~~~~~~~~l 463 (555)
T TIGR03143 442 SGHELNSFILALYNAAGPGQPL 463 (555)
T ss_pred ccHhHHHHHHHHHHhcCCCCCC
Confidence 8899999999999999887766
No 142
>PHA02152 hypothetical protein
Probab=34.12 E-value=28 Score=26.46 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=30.2
Q ss_pred cccceeeeeeeCceeEEecCCCCCceeeeecCChhHHHHHHHHHhhccccC
Q psy4160 94 YDPCTCMFFFRNKHIMIDLGTGNNNKINWALEDKQEMIDIVETVYRGARKG 144 (160)
Q Consensus 94 ~dP~tvmFFfrnkHm~vD~GTgnnnKin~~~~~kqe~iDiie~iyrga~kG 144 (160)
..|+|| -||+.+.=+||.|-|||-=+ ...+.|---.||.++ .||+=|
T Consensus 2 sspfsi-~fy~dr~~~v~~~ygnhgwi--sp~~i~~a~~ii~vv-~g~~~g 48 (96)
T PHA02152 2 SSPFTV-EFYNDRNEKVDVRYGNHGWV--SPSNIRYAENIINVV-NGARFG 48 (96)
T ss_pred CCceEE-EEeccccccccccccccCcc--ChhHHHHHHHHHHhh-cccchh
Confidence 469997 67789899999999997422 244445444444433 455543
No 143
>PF01581 FARP: FMRFamide related peptide family; InterPro: IPR002544 The neuropeptide Phe-Met-Arg-Phe-NH2 (FMRFamide) is a potent cardioactive neuropeptide in Lymnaea stagnalis []. FMRFamide (Phe-Met-Arg-Phe-NH2) was first demonstrated to be cardioactive in several molluscan species. FMRFamide is now known to be cardioexcitatory in mammals, to inhibit morphine-induced antinociception, and to block morphine-, defeat-, and deprivation-induced feeding []. Thirteen neuropeptides varying in length from 7 to 11 residues and ending C-terminally in -Phe-Met-Arg-Phe-NH2 (calliFMRFamides 1-13) and one dodecapeptide ending in -Met-Ile-Arg-Phe-NH2 (calliMIRFamide 1) have been isolated from thoracic ganglia of the blowfly Calliphora vomitoria. Results indicate that the N terminus (in addition to the C terminus as previously found for FMRFamides of other organisms) is crucial for at least some biological activities [].; GO: 0007218 neuropeptide signaling pathway
Probab=33.83 E-value=16 Score=17.63 Aligned_cols=7 Identities=43% Similarity=1.127 Sum_probs=5.2
Q ss_pred hhhhccC
Q psy4160 44 DVIRFGH 50 (160)
Q Consensus 44 ~viRFGr 50 (160)
.-+||||
T Consensus 5 ~~~RFGr 11 (11)
T PF01581_consen 5 NFMRFGR 11 (11)
T ss_pred cccccCC
Confidence 3589996
No 144
>KOG4251|consensus
Probab=33.73 E-value=19 Score=32.48 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=21.4
Q ss_pred hhHHhhccCCCCCCcccHHHHHHhh
Q psy4160 7 IAPFLNKCDADDDHLITLKEWARCL 31 (160)
Q Consensus 7 ~~~Ff~~CD~~~D~~is~~EW~~C~ 31 (160)
++.||+.-|+|+||.||-.|+--=|
T Consensus 142 SkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 142 SKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred hhhheeeeCCCCCCceehhhhhhHH
Confidence 4689999999999999998886544
No 145
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=33.57 E-value=1.7e+02 Score=22.86 Aligned_cols=35 Identities=17% Similarity=0.395 Sum_probs=25.8
Q ss_pred hhhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeC
Q psy4160 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDI 81 (160)
Q Consensus 44 ~viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi 81 (160)
.||-|.-.|-|+|.++=..|.+++++ ++.+|. |+.
T Consensus 71 vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~-v~~ 105 (185)
T PRK15412 71 VLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVG-MNY 105 (185)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEE-EEC
Confidence 58999999999999977777777653 454444 444
No 146
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=33.51 E-value=37 Score=24.23 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=20.7
Q ss_pred hhHHhhccCCCCCCcccHHHHHHh
Q psy4160 7 IAPFLNKCDADDDHLITLKEWARC 30 (160)
Q Consensus 7 ~~~Ff~~CD~~~D~~is~~EW~~C 30 (160)
+...++.-|.|.||+|+.+|+...
T Consensus 53 v~~m~~~~D~d~dG~Idf~EFv~l 76 (88)
T cd05029 53 IAKLMEDLDRNKDQEVNFQEYVTF 76 (88)
T ss_pred HHHHHHHhcCCCCCCCcHHHHHHH
Confidence 566788999999999999999764
No 147
>KOG4233|consensus
Probab=33.49 E-value=22 Score=26.87 Aligned_cols=8 Identities=50% Similarity=1.510 Sum_probs=7.0
Q ss_pred HHHHHHhh
Q psy4160 24 LKEWARCL 31 (160)
Q Consensus 24 ~~EW~~C~ 31 (160)
++|||.||
T Consensus 82 L~eWc~~F 89 (90)
T KOG4233|consen 82 LNEWCDCF 89 (90)
T ss_pred HHHHHHHh
Confidence 68999996
No 148
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=33.40 E-value=90 Score=19.24 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=23.0
Q ss_pred hccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCcccc
Q psy4160 47 RFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPD 86 (160)
Q Consensus 47 RFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpd 86 (160)
=|+..+.|.|.++-++|... + .....+|+++-+.
T Consensus 4 l~~~~~c~~c~~~~~~l~~~-----~-i~~~~~~i~~~~~ 37 (73)
T cd02976 4 VYTKPDCPYCKATKRFLDER-----G-IPFEEVDVDEDPE 37 (73)
T ss_pred EEeCCCChhHHHHHHHHHHC-----C-CCeEEEeCCCCHH
Confidence 48899999999977766552 2 2345677766444
No 149
>KOG0377|consensus
Probab=32.77 E-value=24 Score=34.09 Aligned_cols=22 Identities=23% Similarity=0.687 Sum_probs=20.3
Q ss_pred HhhccCCCCCCcccHHHHHHhh
Q psy4160 10 FLNKCDADDDHLITLKEWARCL 31 (160)
Q Consensus 10 Ff~~CD~~~D~~is~~EW~~C~ 31 (160)
=|+..|..|-|+||...|+.|-
T Consensus 469 eF~~~D~~ksG~lsis~Wa~~m 490 (631)
T KOG0377|consen 469 EFRKYDPKKSGKLSISHWAKCM 490 (631)
T ss_pred HHHhcChhhcCeeeHHHHHHHH
Confidence 4899999999999999999994
No 150
>KOG1672|consensus
Probab=32.31 E-value=73 Score=27.47 Aligned_cols=62 Identities=21% Similarity=0.155 Sum_probs=47.7
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhhcc-eEEEEEeCCccccccccccccccceeeeeeeCc
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVKNF-AVIYLVDITKVPDFNKMYELYDPCTCMFFFRNK 106 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvknf-avIYlvDi~~Vpdfn~myeL~dP~tvmFFfrnk 106 (160)
.+|+.|=|++--.|-.||.-|..+|.+ -. .-.+-|+.+..|-+.+=-.|---+||.+|=+++
T Consensus 86 kVVcHFY~~~f~RCKimDkhLe~LAk~--h~eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~ 148 (211)
T KOG1672|consen 86 KVVCHFYRPEFFRCKIMDKHLEILAKR--HVETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGK 148 (211)
T ss_pred eEEEEEEcCCCcceehHHHHHHHHHHh--cccceEEEEecccCceeeeeeeeeEeeeEEEEEcCE
Confidence 569999999999999999999999985 22 334678999999999888884434444654444
No 151
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=31.86 E-value=31 Score=31.55 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.9
Q ss_pred hHHhhccCCCCCCcccHHHHH
Q psy4160 8 APFLNKCDADDDHLITLKEWA 28 (160)
Q Consensus 8 ~~Ff~~CD~~~D~~is~~EW~ 28 (160)
..-|+.+|.++||.||..||-
T Consensus 337 ~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 337 QEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred HHHHHHhCCCCCCcCcHHHHH
Confidence 567999999999999999993
No 152
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=31.74 E-value=33 Score=24.11 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.3
Q ss_pred cchhHHhhccCCCCCCcccHHHHHHhh
Q psy4160 5 HCIAPFLNKCDADDDHLITLKEWARCL 31 (160)
Q Consensus 5 ~C~~~Ff~~CD~~~D~~is~~EW~~C~ 31 (160)
.-+..+|...|.+++|.|+..|+..-+
T Consensus 44 ~ev~~i~~~~d~~~~g~I~~~eF~~~~ 70 (96)
T smart00027 44 TLLAKIWNLADIDNDGELDKDEFALAM 70 (96)
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence 346788999999999999999998764
No 153
>PF14479 HeLo: Prion-inhibition and propagation; PDB: 2WVQ_A 2WVN_A 2WVO_A.
Probab=31.02 E-value=37 Score=26.80 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=14.7
Q ss_pred CCCCceeeeecCChhHHHHHHHHH
Q psy4160 114 TGNNNKINWALEDKQEMIDIVETV 137 (160)
Q Consensus 114 TgnnnKin~~~~~kqe~iDiie~i 137 (160)
+.=..|+.|++.+|+.|=++|+.+
T Consensus 146 ~~~~~r~~Wai~Dk~~F~~lI~~l 169 (212)
T PF14479_consen 146 TSLPKRARWAIYDKEKFERLIEDL 169 (212)
T ss_dssp S-S-----EEE-SHHHHHHHHHHH
T ss_pred ccccccceeeecchHHHHHHHHHH
Confidence 444578999999999999999875
No 154
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=29.79 E-value=62 Score=25.15 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=27.8
Q ss_pred ceeeeecCChhHHHHHHHHHhhccccCCeeE
Q psy4160 118 NKINWALEDKQEMIDIVETVYRGARKGRGLV 148 (160)
Q Consensus 118 nKin~~~~~kqe~iDiie~iyrga~kGk~iv 148 (160)
.|+.+.+.+..+....++.+|+.|..|||=|
T Consensus 126 tk~~~~v~~~~~i~~~v~~A~~~a~s~~gPV 156 (162)
T cd07038 126 TCAAARLTDPENAAEEIDRVLRTALRESRPV 156 (162)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHHHHHCCCCE
Confidence 6888999999999999999999999998844
No 155
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=28.58 E-value=1.1e+02 Score=20.74 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=39.1
Q ss_pred hhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccc----cccccccc--cccceeeeeeeCcee
Q psy4160 46 IRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVP----DFNKMYEL--YDPCTCMFFFRNKHI 108 (160)
Q Consensus 46 iRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vp----dfn~myeL--~dP~tvmFFfrnkHm 108 (160)
.=|++++=|.|.+.=+.|.+++++.+++ .+..+|+++-+ ++.+++.. ..-++ .|..++||
T Consensus 4 ~iy~~~~C~~C~~a~~~L~~l~~~~~~i-~~~~idi~~~~~~~~el~~~~~~~~~~vP~--ifi~g~~i 69 (85)
T PRK11200 4 VIFGRPGCPYCVRAKELAEKLSEERDDF-DYRYVDIHAEGISKADLEKTVGKPVETVPQ--IFVDQKHI 69 (85)
T ss_pred EEEeCCCChhHHHHHHHHHhhcccccCC-cEEEEECCCChHHHHHHHHHHCCCCCcCCE--EEECCEEE
Confidence 3488999999999888888887754444 45678887633 45554543 23334 34577775
No 156
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=28.20 E-value=64 Score=30.47 Aligned_cols=38 Identities=32% Similarity=0.502 Sum_probs=32.3
Q ss_pred CceeeeecCChhHHHHHHHHHhhccccCC-ee--EECCCCc
Q psy4160 117 NNKINWALEDKQEMIDIVETVYRGARKGR-GL--VVSPKDY 154 (160)
Q Consensus 117 nnKin~~~~~kqe~iDiie~iyrga~kGk-~i--v~sP~dy 154 (160)
-.|+++.+.+.+++-.+|..+||-|..|| |- |.=|+|.
T Consensus 122 ~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv 162 (550)
T COG0028 122 ITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDV 162 (550)
T ss_pred hheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhH
Confidence 47999999999999999999999999888 54 4456664
No 157
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=27.37 E-value=31 Score=26.06 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=17.4
Q ss_pred eEEEEEeCCccccccccccc
Q psy4160 74 AVIYLVDITKVPDFNKMYEL 93 (160)
Q Consensus 74 avIYlvDi~~Vpdfn~myeL 93 (160)
..||+.|++..+.+|+.|.-
T Consensus 76 ~~iyl~d~~~~~~~~~~~~~ 95 (127)
T TIGR03610 76 NHIFIRDWADYAAINEVYAE 95 (127)
T ss_pred EEEEEcCHHHHHHHHHHHHH
Confidence 57899999999999988863
No 158
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=26.92 E-value=79 Score=26.06 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=29.1
Q ss_pred hhhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCc
Q psy4160 45 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITK 83 (160)
Q Consensus 45 viRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~ 83 (160)
||-|...|=|.|.+...+|.+++++.+ + .++.|.+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~-~Vi~Vs~D~ 109 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-F-SVFPYTLDG 109 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-C-EEEEEEeCC
Confidence 566999999999999999999999863 4 444455553
No 159
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=26.65 E-value=33 Score=24.63 Aligned_cols=20 Identities=25% Similarity=0.605 Sum_probs=17.9
Q ss_pred eEEEEEeCCccccccccccc
Q psy4160 74 AVIYLVDITKVPDFNKMYEL 93 (160)
Q Consensus 74 avIYlvDi~~Vpdfn~myeL 93 (160)
..+|+.|++..+.+|+.|.-
T Consensus 52 ~~iyl~d~~~~~~~n~~~~~ 71 (101)
T cd06155 52 VTLYLRDMSDFAEVNSVYGT 71 (101)
T ss_pred EEEEECCHHHHHHHHHHHHH
Confidence 78899999999999998874
No 160
>PF05972 APC_15aa: APC 15 residue motif; InterPro: IPR009240 The 15 aa repeat is found in the APC protein family. It is involved in binding beta-catenin [] along with the IPR009223 from INTERPRO repeats. Many human cancer mutations map to the region around these motifs, and may be involved in disrupting their binding of beta-catenin.; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1JPP_C.
Probab=26.50 E-value=26 Score=19.01 Aligned_cols=10 Identities=60% Similarity=0.996 Sum_probs=4.8
Q ss_pred CCCCcccccC
Q psy4160 150 SPKDYSTKYR 159 (160)
Q Consensus 150 sP~dy~~~~~ 159 (160)
-|.|||.+|.
T Consensus 4 qP~dyS~kY~ 13 (16)
T PF05972_consen 4 QPIDYSLKYS 13 (16)
T ss_dssp ----CCCCTT
T ss_pred cccchhhhcc
Confidence 3889998874
No 161
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=26.46 E-value=58 Score=26.77 Aligned_cols=57 Identities=7% Similarity=0.089 Sum_probs=44.0
Q ss_pred CCcccHHHHHHhhcCChhhHHhhhhh-hhhccCCCChhhhhhHHHHHHHHHh---hhcceEEEEEeCCc
Q psy4160 19 DHLITLKEWARCLELNEDEIEDQCED-VIRFGHDWDPTCMKMDEVLYSIAEK---VKNFAVIYLVDITK 83 (160)
Q Consensus 19 D~~is~~EW~~C~~L~e~~~d~rc~~-viRFGrd~dp~Cm~mDevL~kia~k---vknfavIYlvDi~~ 83 (160)
+|.+|-..|..= +-++.+ +|-|.-.|-++|..-.-.|.+++.+ +.+|-+.+.|+.++
T Consensus 44 ~~~~~y~~~~~~--------~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd 104 (184)
T TIGR01626 44 GKDTVYQPWGSA--------ELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADD 104 (184)
T ss_pred CCcccceeccHH--------HcCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECcc
Confidence 466677777652 334544 7899999999999988899999774 67788889999887
No 162
>PF00821 PEPCK: Phosphoenolpyruvate carboxykinase; InterPro: IPR008209 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate. The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria []. Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding []. With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels []. PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another [, ]. Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site []. PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents GTP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004611 phosphoenolpyruvate carboxykinase activity, 0005525 GTP binding, 0006094 gluconeogenesis; PDB: 2FAH_A 2FAF_A 2QZY_B 2ZCI_D 3MOE_A 3DT7_B 2RKD_A 2RKA_A 2RK8_A 2QF2_B ....
Probab=26.12 E-value=27 Score=34.00 Aligned_cols=36 Identities=39% Similarity=0.688 Sum_probs=28.2
Q ss_pred ecCCCCCceeeeecCChhHHHHHHHHHhhccccCCeeEECCC
Q psy4160 111 DLGTGNNNKINWALEDKQEMIDIVETVYRGARKGRGLVVSPK 152 (160)
Q Consensus 111 D~GTgnnnKin~~~~~kqe~iDiie~iyrga~kGk~iv~sP~ 152 (160)
|.|.-|| | -+.+|+..-+...|+|.||||.+.|-|.
T Consensus 75 d~~p~~n----w--~~~~~~~~~l~~~f~G~M~GRtMyVipf 110 (586)
T PF00821_consen 75 DAGPTNN----W--MDPEEMKAELDELFPGCMKGRTMYVIPF 110 (586)
T ss_dssp HHSTTSS----E--E-HHHHHHHHHCCSTTTTTTSEEEEEEE
T ss_pred ccCCccC----C--CCHHHHHHHHHHhchhhhhhchHHhhHh
Confidence 4555554 2 3678999999999999999999998775
No 163
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=25.99 E-value=1.4e+02 Score=26.13 Aligned_cols=93 Identities=23% Similarity=0.256 Sum_probs=51.4
Q ss_pred ccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccc-eeeeeeeCceeEEecCCCC---Cceeeee
Q psy4160 48 FGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPC-TCMFFFRNKHIMIDLGTGN---NNKINWA 123 (160)
Q Consensus 48 FGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~-tvmFFfrnkHm~vD~GTgn---nnKin~~ 123 (160)
||+..-|. ..+++.|...|+++++ |.|+-.| |.+.++..++- ++ +|+ ----+...-|-+ ..+..|.
T Consensus 133 ~g~~~~~~-~~~~~~L~~~a~~l~~-~~i~~~d------f~~v~~~a~~~~df-vY~-DPPY~~~s~t~~f~~Y~~~~f~ 202 (274)
T COG0338 133 FGRYKNPY-FPEEENLKLFAEKLKN-ATIENGD------FEEVLADADSGDDF-VYC-DPPYLPLSATSNFTAYGGNGFT 202 (274)
T ss_pred ccccccCC-CchHHHHHHHHHHHhc-CeEEcCC------HHHHHhhccCCCcE-EEe-CCCCCccccccccccccCCCCC
Confidence 67775444 5566779999999999 8888777 44445555555 42 222 111111111211 1223344
Q ss_pred cCChhHHHHHHHHHhhc-cccCCeeEECCCC
Q psy4160 124 LEDKQEMIDIVETVYRG-ARKGRGLVVSPKD 153 (160)
Q Consensus 124 ~~~kqe~iDiie~iyrg-a~kGk~iv~sP~d 153 (160)
-.+-+ .+.+++.+= ++.|..+..|+-+
T Consensus 203 ~~~~~---~La~~~~~l~~~~~i~~~~sn~~ 230 (274)
T COG0338 203 EDQHL---RLAEVLKELEGKRGISVLDSNSD 230 (274)
T ss_pred hHHHH---HHHHHHHhccccceEEEecCccc
Confidence 44444 445555544 6777777777764
No 164
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=25.34 E-value=1.7e+02 Score=22.98 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=54.0
Q ss_pred HHHHHHHHhhhcceEEEEEeCCccccccccccc----cccceeeeeeeCceeEE-----------ecCCCCCceeeeecC
Q psy4160 61 EVLYSIAEKVKNFAVIYLVDITKVPDFNKMYEL----YDPCTCMFFFRNKHIMI-----------DLGTGNNNKINWALE 125 (160)
Q Consensus 61 evL~kia~kvknfavIYlvDi~~Vpdfn~myeL----~dP~tvmFFfrnkHm~v-----------D~GTgnnnKin~~~~ 125 (160)
+++.++.+.++++..+|++|..-++. +++.+| ...-..|++.+|+=|+. ++=+|+ +-+.|.-+
T Consensus 8 ~~v~~l~~~l~~~~~v~v~~~~gl~~-~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~~~~~~l~~~l~G~-~al~fs~~ 85 (172)
T PRK00099 8 EIVAELAEKLKKAQSAVVADYRGLTV-AQMTELRKKLREAGVEYKVVKNTLARRALEGTGFEGLDDLLKGP-TAIAFSYE 85 (172)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCcH-HHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCCchhhhhhCcCC-eEEEEeCC
Confidence 57888899999999999999887653 445555 33334578899988876 333444 55666667
Q ss_pred ChhHHHHHHHHHhh
Q psy4160 126 DKQEMIDIVETVYR 139 (160)
Q Consensus 126 ~kqe~iDiie~iyr 139 (160)
|..+...++...-+
T Consensus 86 d~~~~~k~l~~f~K 99 (172)
T PRK00099 86 DPVAAAKVLKDFAK 99 (172)
T ss_pred ChHHHHHHHHHHHh
Confidence 77777777776654
No 165
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=25.30 E-value=1.4e+02 Score=18.29 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=28.4
Q ss_pred ccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCcccc----cccccccccccee
Q psy4160 48 FGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPD----FNKMYELYDPCTC 99 (160)
Q Consensus 48 FGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpd----fn~myeL~dP~tv 99 (160)
|+.+|-|.|.++-..|... + .....+|+++-|. +.+-+....-+++
T Consensus 5 f~~~~C~~C~~~~~~l~~~-----~-i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~ 54 (74)
T TIGR02196 5 YTTPWCPPCKKAKEYLTSK-----G-IAFEEIDVEKDSAAREEVLKVLGQRGVPVI 54 (74)
T ss_pred EcCCCChhHHHHHHHHHHC-----C-CeEEEEeccCCHHHHHHHHHHhCCCcccEE
Confidence 8999999999976666442 2 3446788876543 3333444333453
No 166
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=24.91 E-value=1e+02 Score=22.95 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=26.7
Q ss_pred ceeeeecCChhHHHHHHHHHhhccccC-CeeE
Q psy4160 118 NKINWALEDKQEMIDIVETVYRGARKG-RGLV 148 (160)
Q Consensus 118 nKin~~~~~kqe~iDiie~iyrga~kG-k~iv 148 (160)
.|+.+.+++.+++-+.++.+|+-|..+ +|=|
T Consensus 118 ~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv 149 (155)
T cd07035 118 TKWAYRVTSPEEIPEALRRAFRIALSGRPGPV 149 (155)
T ss_pred hceEEEcCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 488888999999999999999999887 4533
No 167
>KOG3048|consensus
Probab=24.47 E-value=39 Score=27.84 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=15.8
Q ss_pred ccccceeeeeeeCceeEEecCCCC
Q psy4160 93 LYDPCTCMFFFRNKHIMIDLGTGN 116 (160)
Q Consensus 93 L~dP~tvmFFfrnkHm~vD~GTgn 116 (160)
||-|-.+- -|.|.+||.|||=
T Consensus 73 lYVPGkl~---d~~k~lVDIGTGY 93 (153)
T KOG3048|consen 73 LYVPGKLS---DNSKFLVDIGTGY 93 (153)
T ss_pred eeccceec---cccceeEeccCce
Confidence 46677752 3788999999994
No 168
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=24.27 E-value=1.1e+02 Score=27.01 Aligned_cols=91 Identities=18% Similarity=0.209 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhcceEEEEEeCCcccccccccccc---ccceeeeeeeCceeEEecCCC---------------CCceeee
Q psy4160 61 EVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELY---DPCTCMFFFRNKHIMIDLGTG---------------NNNKINW 122 (160)
Q Consensus 61 evL~kia~kvknfavIYlvDi~~Vpdfn~myeL~---dP~tvmFFfrnkHm~vD~GTg---------------nnnKin~ 122 (160)
+...++.+.++++-.+|+||.+-|+. +||=+|. -+-+.+++-+|+=|+.=+|.- +|+-+.|
T Consensus 12 ~~v~~l~e~l~~y~~v~vv~~~nv~s-~ql~~iR~~LR~~a~~~vgKNTL~r~AL~~~~~~~~~l~~L~~~LkG~~gliF 90 (310)
T PTZ00135 12 AYFEKLYELLEKYKKILIVSVDNVGS-KQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLPHVKGNVGFVF 90 (310)
T ss_pred HHHHHHHHHHHhCCEEEEEEcCCCCH-HHHHHHHHHHhcCCEEEEEehHHHHHHHhhCcccccChHHHHhhccCCEEEEE
Confidence 57788889999999999999998874 5555662 223567889999998865531 1233445
Q ss_pred ecCChhHHHHHHHHHhhccccCCeeEECCCC
Q psy4160 123 ALEDKQEMIDIVETVYRGARKGRGLVVSPKD 153 (160)
Q Consensus 123 ~~~~kqe~iDiie~iyrga~kGk~iv~sP~d 153 (160)
.-+|..+..++++.-=+.+ --|+=.++|.|
T Consensus 91 Tn~dp~ev~k~l~~~k~~~-~AKaG~iAp~d 120 (310)
T PTZ00135 91 TKDDLFEVKPVILENKVPA-PARAGVIAPID 120 (310)
T ss_pred ECCCHHHHHHHHHHcCCcc-ccccCCCCCce
Confidence 5566777777776654432 22333455555
No 169
>PRK00831 rpmJ 50S ribosomal protein L36; Validated
Probab=24.24 E-value=53 Score=21.61 Aligned_cols=18 Identities=44% Similarity=0.525 Sum_probs=16.1
Q ss_pred ccCCeeEECCCCcccccC
Q psy4160 142 RKGRGLVVSPKDYSTKYR 159 (160)
Q Consensus 142 ~kGk~iv~sP~dy~~~~~ 159 (160)
++|+..|+++.++..++|
T Consensus 22 R~grv~Vick~nprhKqR 39 (41)
T PRK00831 22 RKGRVYVINKKNPRFKAR 39 (41)
T ss_pred eCCEEEEEcCCCCccccc
Confidence 789999999999988876
No 170
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=24.00 E-value=40 Score=24.19 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=26.8
Q ss_pred hhhhhHHHHHHHHHh-------hhc--ceEEEEEeCCccccccccccc
Q psy4160 55 TCMKMDEVLYSIAEK-------VKN--FAVIYLVDITKVPDFNKMYEL 93 (160)
Q Consensus 55 ~Cm~mDevL~kia~k-------vkn--favIYlvDi~~Vpdfn~myeL 93 (160)
.-.|+..+|..+..- +++ ...+|+.|++..+.+|+.|.=
T Consensus 27 ~~~Q~~~~~~nl~~~L~~~G~~~~dvvk~~vyl~d~~~~~~~~~~~~~ 74 (105)
T cd06150 27 ITGQTRQVLAKIDALLAEAGSDKSRILSATIWLADMADFAAMNAVWDA 74 (105)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEccHHHHHHHHHHHHH
Confidence 345555666666553 333 267899999999999987763
No 171
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=23.66 E-value=61 Score=22.29 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=37.2
Q ss_pred hhccCCCChhhhhhHHHHHHHHHhhhcceEEEEEeCCccccccccccccccc
Q psy4160 46 IRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPC 97 (160)
Q Consensus 46 iRFGrd~dp~Cm~mDevL~kia~kvknfavIYlvDi~~Vpdfn~myeL~dP~ 97 (160)
+=|||++=+-|-+.-++|.+++.. .-..+-.|||++=|..-.-|....|.
T Consensus 3 ~l~~k~~C~LC~~a~~~L~~~~~~--~~~~l~~vDI~~d~~l~~~Y~~~IPV 52 (81)
T PF05768_consen 3 TLYTKPGCHLCDEAKEILEEVAAE--FPFELEEVDIDEDPELFEKYGYRIPV 52 (81)
T ss_dssp EEEE-SSSHHHHHHHHHHHHCCTT--STCEEEEEETTTTHHHHHHSCTSTSE
T ss_pred EEEcCCCCChHHHHHHHHHHHHhh--cCceEEEEECCCCHHHHHHhcCCCCE
Confidence 348888888898888888876543 33677899999888877777776665
No 172
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=23.61 E-value=3.3e+02 Score=20.60 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=49.3
Q ss_pred CChhh-hhhHHHHHHHHHhhhcc-eEEEEEeCCccccccccccc--cccceeeeeeeCceeEEecCCCCCce-eeeecCC
Q psy4160 52 WDPTC-MKMDEVLYSIAEKVKNF-AVIYLVDITKVPDFNKMYEL--YDPCTCMFFFRNKHIMIDLGTGNNNK-INWALED 126 (160)
Q Consensus 52 ~dp~C-m~mDevL~kia~kvknf-avIYlvDi~~Vpdfn~myeL--~dP~tvmFFfrnkHm~vD~GTgnnnK-in~~~~~ 126 (160)
.++.+ -.+-+.|.++|++.|.= ..+-.+|.++=+.+-+.|.| .+.+++ ..++ ...+ .++ ....+ +
T Consensus 34 ~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v-~i~~-------~~~~-KY~~~~~~~-t 103 (130)
T cd02983 34 CQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAM-VAIN-------FRKM-KFATLKGSF-S 103 (130)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEE-EEEe-------cccC-ccccccCcc-C
Confidence 34444 34556888999988777 56668999998889999998 344553 2322 2222 333 22333 3
Q ss_pred hhHHHHHHHHHhhccccC
Q psy4160 127 KQEMIDIVETVYRGARKG 144 (160)
Q Consensus 127 kqe~iDiie~iyrga~kG 144 (160)
.+.+-.-++.+..|--.+
T Consensus 104 ~e~i~~Fv~~~l~Gkl~~ 121 (130)
T cd02983 104 EDGINEFLRELSYGRGPT 121 (130)
T ss_pred HHHHHHHHHHHHcCCccc
Confidence 355555556555554433
No 173
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=23.21 E-value=63 Score=23.97 Aligned_cols=17 Identities=12% Similarity=0.470 Sum_probs=15.1
Q ss_pred CChhHHHHHHHHHhhcc
Q psy4160 125 EDKQEMIDIVETVYRGA 141 (160)
Q Consensus 125 ~~kqe~iDiie~iyrga 141 (160)
-+++|||++|+.|+.+-
T Consensus 10 yTE~EFl~~v~~i~~~~ 26 (85)
T PF01320_consen 10 YTESEFLEFVKEIFNAE 26 (85)
T ss_dssp SBHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHcCC
Confidence 46899999999999985
No 174
>PF00707 IF3_C: Translation initiation factor IF-3, C-terminal domain; InterPro: IPR019815 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2IFE_A 1TIG_A 2CRQ_A.
Probab=23.13 E-value=97 Score=22.07 Aligned_cols=32 Identities=34% Similarity=0.442 Sum_probs=22.9
Q ss_pred hhhhhc-cCCCChhhhhhHHHHHHHHHhhhcceE
Q psy4160 43 EDVIRF-GHDWDPTCMKMDEVLYSIAEKVKNFAV 75 (160)
Q Consensus 43 ~~viRF-Grd~dp~Cm~mDevL~kia~kvknfav 75 (160)
..+|+| ||+.... -+..++|.++.+.++..+.
T Consensus 36 kv~i~~rgr~~~~~-e~~~~~l~~i~~~l~~~~~ 68 (88)
T PF00707_consen 36 KVVIRFRGREMAHP-ELGEEVLERIIEELKDVGK 68 (88)
T ss_dssp EEEEE-SSTTTTHH-HHHHHHHHHHHHHCTTTEE
T ss_pred EEEEEecCccccch-HHHHHHHHHHHHHHhhhcE
Confidence 347888 8875322 2778899999999888876
No 175
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=22.85 E-value=3.4e+02 Score=20.48 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=29.2
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhh-cceEEEEEeCCc
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVK-NFAVIYLVDITK 83 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvk-nfavIYlvDi~~ 83 (160)
..||-|...|-|.|.++=..|.+++++.+ +-..++.|.++.
T Consensus 27 ~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~ 68 (171)
T cd02969 27 ALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSND 68 (171)
T ss_pred EEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCc
Confidence 35788999999999887777777777765 234556665543
No 176
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=22.80 E-value=1.5e+02 Score=20.41 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=23.6
Q ss_pred eCceeEEecCCCCCceeeeecCChhHHHHHHHH
Q psy4160 104 RNKHIMIDLGTGNNNKINWALEDKQEMIDIVET 136 (160)
Q Consensus 104 rnkHm~vD~GTgnnnKin~~~~~kqe~iDiie~ 136 (160)
--+.+.+.+|.++ .+--+..++++||.-+..
T Consensus 42 S~~rl~I~y~~~~--~i~IsP~~~~~FI~~L~k 72 (74)
T PF06713_consen 42 SLDRLEIYYGKYK--SILISPKDKEEFIAELQK 72 (74)
T ss_pred cccEEEEEECCCC--EEEEECCCHHHHHHHHHh
Confidence 3578889988444 477789999999987754
No 177
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=21.77 E-value=58 Score=23.85 Aligned_cols=20 Identities=25% Similarity=0.680 Sum_probs=17.3
Q ss_pred eEEEEEeCCccccccccccc
Q psy4160 74 AVIYLVDITKVPDFNKMYEL 93 (160)
Q Consensus 74 avIYlvDi~~Vpdfn~myeL 93 (160)
..+|+.|+.+.+.+++.|.-
T Consensus 69 ~~~yl~d~~~~~~~~~v~~~ 88 (121)
T PF01042_consen 69 VTVYLTDMSDFPAVNEVWKE 88 (121)
T ss_dssp EEEEESSGGGHHHHHHHHHH
T ss_pred eeehhhhhhhhHHHHHHHHH
Confidence 67899999999988888776
No 178
>KOG0044|consensus
Probab=21.77 E-value=62 Score=27.00 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=19.4
Q ss_pred hhHHhhccCCCCCCcccHHHHHH
Q psy4160 7 IAPFLNKCDADDDHLITLKEWAR 29 (160)
Q Consensus 7 ~~~Ff~~CD~~~D~~is~~EW~~ 29 (160)
+..-|+.-|.|+||.|+-.||=.
T Consensus 66 ~~~vF~~fD~~~dg~i~F~Efi~ 88 (193)
T KOG0044|consen 66 AELVFRTFDKNKDGTIDFLEFIC 88 (193)
T ss_pred HHHHHHHhcccCCCCcCHHHHHH
Confidence 34569999999999999999744
No 179
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=20.94 E-value=3e+02 Score=28.22 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=28.9
Q ss_pred hhhhhccCCCChhhhhhHHHHHHHHHhhh--cceEEEE
Q psy4160 43 EDVIRFGHDWDPTCMKMDEVLYSIAEKVK--NFAVIYL 78 (160)
Q Consensus 43 ~~viRFGrd~dp~Cm~mDevL~kia~kvk--nfavIYl 78 (160)
.+||-|+-.|-++|+++=..|.+++++.+ ++.+|-+
T Consensus 422 ~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV 459 (1057)
T PLN02919 422 VVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGV 459 (1057)
T ss_pred EEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEE
Confidence 35899999999999998899999998764 3555544
No 180
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=20.80 E-value=56 Score=18.41 Aligned_cols=13 Identities=15% Similarity=0.274 Sum_probs=9.2
Q ss_pred CCCCCCcccHHHH
Q psy4160 15 DADDDHLITLKEW 27 (160)
Q Consensus 15 D~~~D~~is~~EW 27 (160)
|.|.||+|+...-
T Consensus 1 DvN~DG~vna~D~ 13 (21)
T PF00404_consen 1 DVNGDGKVNAIDL 13 (21)
T ss_dssp -TTSSSSSSHHHH
T ss_pred CCCCCCcCCHHHH
Confidence 6789999987543
No 181
>PF10413 Rhodopsin_N: Amino terminal of the G-protein receptor rhodopsin; InterPro: IPR019477 Rhodopsin is the archetypal G-protein-coupled receptor. Such receptors participate in virtually all physiological processes as signalling molecules. They utilise heterotrimeric guanosine triphosphate (GTP)-binding proteins to transduce extracellular signals to intracellular events. Rhodopsin is important because of the pivotal role it plays in visual signal transduction. It is a dimeric transmembrane protein whose intradiskal surface consists of an N-terminal domain and three loops connecting six of the seven transmembrane helices. The N-terminal domain is a compact alpha-helical region with breaks and bends at proline residues outside the membrane []. This entry represents the N-terminal domain, while the transmembrane region is represented by (IPR000276 from INTERPRO). The N-terminal domain is extracellular is and is necessary for successful dimerisation and molecular stability []. ; PDB: 3PXO_A 4A4M_A 3OAX_A 2J4Y_A 2HPY_A 1F88_B 3PQR_A 1L9H_B 2I37_B 1GZM_B ....
Probab=20.69 E-value=25 Score=22.62 Aligned_cols=12 Identities=42% Similarity=0.783 Sum_probs=8.7
Q ss_pred CeeEECCCCccc
Q psy4160 145 RGLVVSPKDYST 156 (160)
Q Consensus 145 k~iv~sP~dy~~ 156 (160)
-|||.||..|..
T Consensus 16 TGvVRsP~eYpQ 27 (36)
T PF10413_consen 16 TGVVRSPYEYPQ 27 (36)
T ss_dssp TSHHS-TTTSHH
T ss_pred cccccCCCcCcc
Confidence 489999999753
No 182
>KOG0034|consensus
Probab=20.52 E-value=1.5e+02 Score=24.52 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=26.5
Q ss_pred hhccCCCCCCcccHHHHHHhhcCChhhHHhhhhhhhhccCCCChhhhhhHHHHHHHHHh
Q psy4160 11 LNKCDADDDHLITLKEWARCLELNEDEIEDQCEDVIRFGHDWDPTCMKMDEVLYSIAEK 69 (160)
Q Consensus 11 f~~CD~~~D~~is~~EW~~C~~L~e~~~d~rc~~viRFGrd~dp~Cm~mDevL~kia~k 69 (160)
|+-.|.++||.||..|-..= |..|-..++.. -||.+..|+++
T Consensus 110 F~vYD~~~~G~I~reel~~i--------------v~~~~~~~~~~---~~e~~~~i~d~ 151 (187)
T KOG0034|consen 110 FRVYDLDGDGFISREELKQI--------------LRMMVGENDDM---SDEQLEDIVDK 151 (187)
T ss_pred HHHhcCCCCCcCcHHHHHHH--------------HHHHHccCCcc---hHHHHHHHHHH
Confidence 55567777777776665542 44555544443 67888888876
No 183
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.26 E-value=1.9e+02 Score=22.93 Aligned_cols=55 Identities=25% Similarity=0.389 Sum_probs=41.2
Q ss_pred EEEeC-CccccccccccccccceeeeeeeCceeEEecCCCCCceeeeecCChhHHHHHHHHHhhcc
Q psy4160 77 YLVDI-TKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINWALEDKQEMIDIVETVYRGA 141 (160)
Q Consensus 77 YlvDi-~~Vpdfn~myeL~dP~tvmFFfrnkHm~vD~GTgnnnKin~~~~~kqe~iDiie~iyrga 141 (160)
|.||- +..|. |-+.+|.---. -|||+. .-.|| -+.||-++.+|-.--|.+.||+-
T Consensus 55 yTvDy~~~~~~-~~~~~~~~~gg-~~ff~a------vkegd--~~~fa~~de~~r~lwvqa~yrat 110 (117)
T cd01234 55 YTVDYMPESDP-DPNSELSLQGG-RHFFNA------VKEGD--ELKFATDDENERHLWVQAMYRAT 110 (117)
T ss_pred eEEeccCCCCC-Ccccccccccc-hhhhhe------eccCc--EEEEeccchHHHHHHHHHHHHHc
Confidence 88884 55555 88888854333 377754 23565 79999999999999999999985
Done!