RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4160
(160 letters)
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription;
1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Length = 142
Score = 195 bits (496), Expect = 2e-65
Identities = 112/122 (91%), Positives = 117/122 (95%)
Query: 39 EDQCEDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCT 98
E+ VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDIT+VPDFNKMYELYDPCT
Sbjct: 21 EEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCT 80
Query: 99 CMFFFRNKHIMIDLGTGNNNKINWALEDKQEMIDIVETVYRGARKGRGLVVSPKDYSTKY 158
MFFFRNKHIMIDLGTGNNNKINWA+EDKQEM+DI+ETVYRGARKGRGLVVSPKDYSTKY
Sbjct: 81 VMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKY 140
Query: 159 RY 160
RY
Sbjct: 141 RY 142
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote
structural genomics, structural genomics consortium,
SGC, U function; 1.73A {Plasmodium yoelii}
Length = 160
Score = 185 bits (471), Expect = 3e-61
Identities = 92/122 (75%), Positives = 108/122 (88%)
Query: 39 EDQCEDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCT 98
ED+ IRFGHD+DP CMKMDE+LY +A+ +KNF VIYLVDIT+VPDFN MYELYDP +
Sbjct: 39 EDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVS 98
Query: 99 CMFFFRNKHIMIDLGTGNNNKINWALEDKQEMIDIVETVYRGARKGRGLVVSPKDYSTKY 158
MFF+RNKH+MIDLGTGNNNKINW + +KQE IDIVET++RGARKGRGLV+SPKDYSTKY
Sbjct: 99 VMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGARKGRGLVISPKDYSTKY 158
Query: 159 RY 160
+Y
Sbjct: 159 KY 160
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 162 bits (412), Expect = 2e-52
Identities = 38/116 (32%), Positives = 71/116 (61%)
Query: 45 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFR 104
V+RFG D DP C+++D++L + + A IYLVD+ + + + +++ + +FFF
Sbjct: 27 VLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFN 86
Query: 105 NKHIMIDLGTGNNNKINWALEDKQEMIDIVETVYRGARKGRGLVVSPKDYSTKYRY 160
+H+ +D G+ ++ K + + KQ+ ID++E +YRGA +G+ +V SP D +Y
Sbjct: 87 GQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPIDPKNIPKY 142
>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A
{Homo sapiens} SCOP: a.39.1.3
Length = 151
Score = 59.1 bits (142), Expect = 5e-12
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 1 MALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIEDQC 42
+ +EHC F CD D+D I L EWA C + + +I+
Sbjct: 108 IPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKDL 149
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 54.6 bits (130), Expect = 7e-10
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 1 MALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIEDQC 42
+ +EHC F CD D+D I L EWA C + + +I+
Sbjct: 186 IPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKDL 227
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 30.6 bits (70), Expect = 0.21
Identities = 2/31 (6%), Positives = 10/31 (32%), Gaps = 9/31 (29%)
Query: 10 FLNKCDADDDHLITLKEWARCLELNEDEIED 40
L + D+ ++ + +++
Sbjct: 118 ALTRSDSTHM------HA---IDELKAKLKV 139
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 29.3 bits (65), Expect = 0.34
Identities = 11/98 (11%), Positives = 29/98 (29%), Gaps = 8/98 (8%)
Query: 48 FGHDWDPTCMKMDEVLYS---IAEKVKNFAVIYLVDITKVPDFNKMYELYD--PCTCMFF 102
W C + I+E NF V+ ++ + P P +F
Sbjct: 53 IHKSWCGACKALKPKFAESTEISELSHNF-VMVNLEDEEEPKDEDFSPDGGYIP-RILFL 110
Query: 103 FRNKHIMIDL-GTGNNNKINWALEDKQEMIDIVETVYR 139
+ + ++ N + ++++ ++
Sbjct: 111 DPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQE 148
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.66
Identities = 27/184 (14%), Positives = 52/184 (28%), Gaps = 41/184 (22%)
Query: 6 CIAPFLNKC-------DADD-DHLITLKEWARCLE-----LNEDEIEDQCEDVIRFGHDW 52
F C D L L+ L DE++ +
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 53 DP--TCMKMDEVLYSIAEKVKNFAVIY----LVDITKVP----------DFNKMYELYDP 96
P L IAE +++ + V+ K+ + + +++D
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 97 CTCMFFFRNKHIMIDLGTGNNNKINWALEDKQEMIDIVETVYRGARKGRGLVVSPKDYST 156
+ F + HI L + W K +++ +V +++ LV ST
Sbjct: 378 LS--VFPPSAHIPTIL-----LSLIWFDVIKSDVMVVVNKLHK-----YSLVEKQPKEST 425
Query: 157 KYRY 160
Sbjct: 426 ISIP 429
Score = 27.5 bits (60), Expect = 2.6
Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 19/139 (13%)
Query: 5 HCIAPF------LNKCDADDDHLITLKEWARCLELNEDEIEDQCEDVIRFGHDWDPTCMK 58
C F L C++ + L L++ ++ N D ++ H
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ----- 231
Query: 59 MDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDP-CTCMFFFRNKHIMIDLGTGNN 117
E+ + K ++ L++ V + K + ++ C + R K + L
Sbjct: 232 -AELRRLLKSKPYENCLLVLLN---VQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 118 NKINWALEDKQEMIDIVET 136
I +L+ + E
Sbjct: 287 THI--SLDHHSMTLTPDEV 303
Score = 26.7 bits (58), Expect = 5.0
Identities = 17/121 (14%), Positives = 32/121 (26%), Gaps = 39/121 (32%)
Query: 3 LEHCIAPFLNKCDADDD----HLITLKEWARCLELNEDEIEDQCED---VIRFGHDWDPT 55
+ L + + I L+ + NE + D + + D
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLEL--KVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 56 CMKMDEVLYS----------IAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRN 105
+D+ YS E++ F +++L DF F
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-------DFR-------------FLEQ 505
Query: 106 K 106
K
Sbjct: 506 K 506
Score = 26.4 bits (57), Expect = 5.9
Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 62/143 (43%)
Query: 31 LELNEDEIEDQCEDVI-----RFGHDWDPTCMKMDEVLYSI--AEKVKNFAVIYLVDITK 83
++ E + Q +D++ F ++D C + ++ SI E++ I
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFD--CKDVQDMPKSILSKEEID--------HIIM 56
Query: 84 VPD-FNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINWALEDKQEMI--DIVETVYRG 140
D + L+ W L KQE + VE V R
Sbjct: 57 SKDAVSGTLRLF---------------------------WTLLSKQEEMVQKFVEEVLR- 88
Query: 141 ARKGRGLVVSPKDYS---TKYRY 160
+Y + +
Sbjct: 89 -----------INYKFLMSPIKT 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.93
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 49/97 (50%)
Query: 57 MKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGN 116
M MD LY ++ + D+ +N+ D H G
Sbjct: 1631 MGMD--LYKTSKAAQ--------DV-----WNRA----D----------NHFKDTYG--- 1658
Query: 117 NNKINWALEDKQEMIDIVE------TVYRGARKGRGL 147
+++ +DIV T++ G KG+ +
Sbjct: 1659 -----FSI------LDIVINNPVNLTIHFGGEKGKRI 1684
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 28.1 bits (62), Expect = 1.00
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 5/96 (5%)
Query: 48 FGHDWDPTCMKMDEVLYS---IAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFR 104
+ + +V I E +N ++ + Y P MF
Sbjct: 51 HHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVP-RIMFVDP 109
Query: 105 NKHIMIDL-GTGNNNKINWALEDKQEMIDIVETVYR 139
+ + D+ G +N + D +I+ ++ R
Sbjct: 110 SLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALR 145
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics,
oxford protein production facility, UN function; 1.90A
{Neisseria meningitidis serogroup B} PDB: 3kjk_A
Length = 128
Score = 27.2 bits (61), Expect = 1.3
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 19/67 (28%)
Query: 33 LNEDEIEDQCEDVIRFGHDWDPTCMKMDEVL----YSIAEKVKNFAVIYLVDITKVPDFN 88
N + +Q DV+ ++D L A + AVIYL D+ D+
Sbjct: 38 ENGETAAEQTADVLA----------QIDRWLAECGSDKAHVLD--AVIYLRDMG---DYA 82
Query: 89 KMYELYD 95
+M ++D
Sbjct: 83 EMNGVWD 89
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 27.4 bits (61), Expect = 1.9
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 15 DADDDHLITLKEWARCL-ELNEDEIEDQCEDVIR 47
D D D ++L E+ L + D +D+
Sbjct: 112 DTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFN 145
>3i3f_A Hypothetical protein; structural genomics, niaid, decode,
infectious seattle structural genomics center for
infectious disease, unknown function; 1.35A {Giardia
lamblia}
Length = 141
Score = 26.9 bits (60), Expect = 2.1
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 17/67 (25%)
Query: 32 ELNEDEIEDQCEDVIRFGHDWDPTCMKMDEVL----YSIAEKVKNFAVIYLVDITKVPDF 87
L++ +E+Q + + L + V I+L +
Sbjct: 52 TLHKG-LEEQTRQTFD----------NIRKCLEYANSGLDYIVS--LNIFLSTSLSDSEE 98
Query: 88 NKMYELY 94
+ ELY
Sbjct: 99 ARFNELY 105
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 27.0 bits (59), Expect = 3.0
Identities = 6/49 (12%), Positives = 14/49 (28%)
Query: 45 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYEL 93
++ F W + +A + + VD + F +
Sbjct: 567 MVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYHSFCTQENV 615
Score = 25.5 bits (55), Expect = 9.5
Identities = 7/59 (11%), Positives = 14/59 (23%), Gaps = 1/59 (1%)
Query: 35 EDEIEDQCEDV-IRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYE 92
+++ + F W +A +K VD P +
Sbjct: 668 NEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAG 726
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 27.2 bits (60), Expect = 3.3
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 10/32 (31%)
Query: 10 FLNKCD-ADDDHLITLKEWARCLELNEDEIED 40
FLNKCD DD+ L LEL E E+ +
Sbjct: 418 FLNKCDMVDDEEL---------LELVEMEVRE 440
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein;
translation initiation inhibitor regulator-like; 2.50A
{Streptococcus mutans}
Length = 125
Score = 25.9 bits (58), Expect = 3.7
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 16/67 (23%)
Query: 32 ELNEDEIEDQCEDVIRFGHDWDPTCMKMDEVL----YSIAEKVKNFAVIYLVDITKVPDF 87
++ IE+Q + V++ + +L VK +L DI F
Sbjct: 40 QVIGTTIEEQTQQVLK----------NISAILTEAGTDFDHVVK--TTCFLSDIDDFVPF 87
Query: 88 NKMYELY 94
N++Y
Sbjct: 88 NEVYATA 94
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured
organism}
Length = 127
Score = 26.0 bits (58), Expect = 3.7
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 16/67 (23%)
Query: 32 ELNEDEIEDQCEDVIRFGHDWDPTCMKMDEVL----YSIAEKVKNFAVIYLVDITKVPDF 87
+L E + Q V + + V + + VK +YL D+ P
Sbjct: 43 QLVEGDFAVQAHQVFK----------NLRAVCEAAGGGLRDIVK--LNVYLTDLANFPIV 90
Query: 88 NKMYELY 94
N++ Y
Sbjct: 91 NEVMGQY 97
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 26.0 bits (57), Expect = 4.2
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 49 GHDWDPTCMKMDEVLYS---IAEKVKNFAVIYLVDITKVPDFNKMYELYDP 96
G DW C+KM + + + VD + + +
Sbjct: 56 GSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQ 106
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea,
structural genomics, UNK function; 2.00A {Sulfolobus
tokodaii} SCOP: d.79.1.1
Length = 128
Score = 26.0 bits (58), Expect = 4.4
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 16/67 (23%)
Query: 32 ELNEDEIEDQCEDVIRFGHDWDPTCMKMDEVL----YSIAEKVKNFAVIYLVDITKVPDF 87
E+ + +I+ Q V+ + E++ +S+++ A ++L D+ DF
Sbjct: 43 EIVKGDIKVQTRQVLD----------NIKEIVKAAGFSLSDVAM--AFVFLKDMNMFNDF 90
Query: 88 NKMYELY 94
N +Y Y
Sbjct: 91 NSVYAEY 97
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.49A
{Pseudomonas aeruginosa}
Length = 122
Score = 25.6 bits (57), Expect = 4.5
Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 19/65 (29%)
Query: 35 EDEIEDQCEDVIRFGHDWDPTCMKMDEVL----YSIAEKVKNFAVIYLVDITKVPDFNKM 90
+I+DQ ++ +D +L + + I L D+ +
Sbjct: 32 SGDIQDQTRQILE----------NIDRLLQSVGSDRGQVLS--VRILLAHRE---DYAGL 76
Query: 91 YELYD 95
+++D
Sbjct: 77 NQVWD 81
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba
histolytica} PDB: 3m4s_A 3mqw_A*
Length = 148
Score = 26.1 bits (58), Expect = 4.7
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 16/67 (23%)
Query: 32 ELNEDEIEDQCEDVIRFGHDWDPTCMKMDEVL----YSIAEKVKNFAVIYLVDITKVPDF 87
+ IE+Q + V+ + VL S+ + VK L DI F
Sbjct: 64 DFAGKTIEEQSKQVMT----------NLKYVLEEAGSSMDKVVK--TTCLLADIKDFGVF 111
Query: 88 NKMYELY 94
N +Y
Sbjct: 112 NGIYAEA 118
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 26.4 bits (59), Expect = 5.0
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 8/31 (25%)
Query: 10 FLNKCDADDDHLITLKEWARCLELNEDEIED 40
F+NK D DD E L+L E E+ D
Sbjct: 134 FMNKVDMVDD-----PEL---LDLVEMEVRD 156
>1xrg_A Putative translation initiation inhibitor, YJGF family; conserved
hypothetical protein, protein structure initiative, PSI;
2.20A {Clostridium thermocellum} SCOP: d.79.1.1
Length = 156
Score = 25.7 bits (57), Expect = 5.1
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 16/67 (23%)
Query: 32 ELNEDEIEDQCEDVIRFGHDWDPTCMKMDEVL----YSIAEKVKNFAVIYLVDITKVPDF 87
E+ + IE+Q + V+ + VL S+ + VK +++ D+
Sbjct: 72 EVVDGGIEEQAKQVLE----------NLKNVLEAAGSSLNKVVK--TTVFIKDMDSFAKV 119
Query: 88 NKMYELY 94
N++Y Y
Sbjct: 120 NEVYAKY 126
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 25.5 bits (56), Expect = 5.5
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 45 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFA--VIYLVDITK----VPDFNKMYELYDPCT 98
++ DW C + ++ +S + K A V+ ++T K + T
Sbjct: 35 MLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPT 94
Query: 99 CMFF 102
+FF
Sbjct: 95 ILFF 98
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 26.4 bits (59), Expect = 5.5
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 10 FLNKCDA-DDDHLITLKEWARCLELNE 35
++NK DA D ++ L E LE+ E
Sbjct: 125 YVNKADAVQDSEMVELVE----LEIRE 147
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 26.2 bits (58), Expect = 5.7
Identities = 4/31 (12%), Positives = 9/31 (29%), Gaps = 9/31 (29%)
Query: 10 FLNKCDADDDHLITLKEWARCLELNEDEIED 40
+ K D E ++ E ++
Sbjct: 131 VITKSDNAGT------EE---IKRTEMIMKS 152
>3gtz_A Putative translation initiation inhibitor; structural genomics,
unknown function, PSI-2, protein struct initiative;
2.50A {Salmonella typhimurium}
Length = 124
Score = 25.3 bits (56), Expect = 6.2
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 19/68 (27%)
Query: 32 ELNEDEIEDQCEDVIRFGHDWDPTCMKMDEVL----YSIAEKVKNFAVIYLVDITKVPDF 87
E + + +Q + + ++D VL S + + A I+L D DF
Sbjct: 31 ENLDADAFEQTANTLA----------QIDAVLEKQGSSKSRILD--ATIFLSDKA---DF 75
Query: 88 NKMYELYD 95
M + +D
Sbjct: 76 AAMNKAWD 83
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome,
ribosomal R ribosomal protein, STM1; 3.00A
{Saccharomyces cerevisiae} PDB: 3izc_s 3izs_s 3j16_G*
3o5h_M 3jyw_8
Length = 312
Score = 25.9 bits (56), Expect = 6.4
Identities = 4/59 (6%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 66 IAEKVKNFAVIYLVDITKVP--DFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINW 122
+ E ++ + +++V + V +++ + + +N + + ++ ++
Sbjct: 15 LREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDF 73
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 25.3 bits (55), Expect = 6.7
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 10 FLNKCDADDDHLITLKEWARCLELNE 35
+ D + D L+TL+E+ + E
Sbjct: 77 VMKNVDTNQDRLVTLEEFLASTQRKE 102
>2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE
NPPSFA, national project on protein structural and
function analyses; 3.60A {Aeropyrum pernix} SCOP:
d.79.1.1
Length = 123
Score = 25.2 bits (56), Expect = 7.2
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 16/67 (23%)
Query: 32 ELNEDEIEDQCEDVIRFGHDWDPTCMKMDEVL----YSIAEKVKNFAVIYLVDITKVPDF 87
L E ++ + + + ++ YS+ + VK +Y+ DI++ +F
Sbjct: 35 ALEEGGFKESAKRALD----------NLKAIVEGAGYSMDDIVK--VTVYITDISRFSEF 82
Query: 88 NKMYELY 94
N++Y Y
Sbjct: 83 NEVYREY 89
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 25.8 bits (56), Expect = 7.3
Identities = 9/77 (11%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 36 DEIEDQCEDVIRFGHDWDPTCMKMDEVLYSIAEKV-KNFAVIYLVDITKVPDFNKMYELY 94
++ + + ++ D C ++ +++ ++E K I D + + K Y +
Sbjct: 18 SKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRID 77
Query: 95 DPCTCMFFFRNKHIMID 111
K +
Sbjct: 78 RAPATTITQDGKDFGVR 94
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A
{Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A
Length = 136
Score = 25.2 bits (56), Expect = 7.7
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 16/67 (23%)
Query: 32 ELNEDEIEDQCEDVIRFGHDWDPTCMKMDEVL----YSIAEKVKNFAVIYLVDITKVPDF 87
+L + ++ + ++ + E+L VK + L DI
Sbjct: 44 QLVPGGVAEEAKQALK----------NLGEILKAAGCDFTNVVK--TTVLLADINDFGTV 91
Query: 88 NKMYELY 94
N++Y+ Y
Sbjct: 92 NEIYKTY 98
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 25.4 bits (55), Expect = 8.9
Identities = 6/52 (11%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 46 IRFGHDWDPTCMKMDEVLYS---IAEKVKNFAVIYLVDITKVPDFNKMYELY 94
+ F C KM+ +++ ++ + N V+ + + + ++
Sbjct: 52 LDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIM 103
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 25.4 bits (55), Expect = 9.2
Identities = 16/136 (11%), Positives = 40/136 (29%), Gaps = 16/136 (11%)
Query: 6 CIAPFLNKCDADDDHLITLKEWARCLELNEDEIEDQCEDVIRFGHDWD------PTCMKM 59
+ F+ + + + ++ + ++R + D P M+
Sbjct: 63 DVREFVTVEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMET 122
Query: 60 ---DEVLYSIAEKVKNFAVIYLVDITKVPDFNK-MYELYDPCTCMFFFRNKHIMIDLGTG 115
E + E + V+Y+ D + N + + I
Sbjct: 123 FLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPA----- 177
Query: 116 NNNKINWALEDKQEMI 131
NK++ E+++E
Sbjct: 178 -LNKVDLLSEEEKERH 192
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 24.9 bits (54), Expect = 9.3
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 48 FGHDWDPTCMKMDEVLYS--IAEKVKNFAVIYLVDITKVPDFNKMYELYD 95
FG +W C +D+ L + + + +D+ ++ + Y
Sbjct: 36 FGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYG 85
>2dyy_A UPF0076 protein PH0854; putative translation initiation
inhibitor, trimer, structural genomics, NPPSFA; 2.60A
{Pyrococcus horikoshii}
Length = 126
Score = 24.8 bits (55), Expect = 9.7
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 16/67 (23%)
Query: 32 ELNEDEIEDQCEDVIRFGHDWDPTCMKMDEVL----YSIAEKVKNFAVIYLVDITKVPDF 87
E+ + +I+DQ V+ + +L YS+ + +K +YL D+
Sbjct: 41 EIVKGDIKDQTRQVLE----------NIKAILEAAGYSLNDVIK--VTVYLKDMNDFAKM 88
Query: 88 NKMYELY 94
N++Y Y
Sbjct: 89 NEVYAEY 95
>3iz5_S 60S ribosomal protein L18A (L18AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_S 3izc_S 3izs_S
Length = 178
Score = 25.5 bits (55), Expect = 9.8
Identities = 5/69 (7%), Positives = 10/69 (14%), Gaps = 2/69 (2%)
Query: 66 IAEKVKNFAVIYLVDITKVP--DFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINWA 123
+ T Y L + ++ N I
Sbjct: 18 TPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNY 77
Query: 124 LEDKQEMID 132
+
Sbjct: 78 GIWLRYQSR 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.448
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,681,774
Number of extensions: 157124
Number of successful extensions: 486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 88
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.0 bits)