RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4160
(160 letters)
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 119 bits (299), Expect = 6e-36
Identities = 111/137 (81%), Positives = 119/137 (86%), Gaps = 5/137 (3%)
Query: 20 HLITLKEWARCLELNEDEIEDQCEDVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLV 79
HL + + + ED + VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLV
Sbjct: 6 HLHNGWQVDQAILSEEDRVV-----VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLV 60
Query: 80 DITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINWALEDKQEMIDIVETVYR 139
DIT+VPDFNKMYELYDPCT MFFFRNKHIMIDLGTGNNNKINWA+EDKQEM+DI+ETVYR
Sbjct: 61 DITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYR 120
Query: 140 GARKGRGLVVSPKDYST 156
GARKGRGLVVSPKDYST
Sbjct: 121 GARKGRGLVVSPKDYST 137
>d1sraa_ a.39.1.3 (A:) C-terminal (EC) domain of
BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId:
9606]}
Length = 151
Score = 59.6 bits (144), Expect = 1e-12
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 1 MALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIED 40
+ +EHC F CD D+D I L EWA C + + +I+
Sbjct: 108 IPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDK 147
>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 250
Score = 26.3 bits (58), Expect = 1.8
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 114 TGNNNKINWALEDKQEMIDIVETVYRGARKGRGLVVSP 151
TG + W +++ + G KGR + V P
Sbjct: 99 TGLSQLGRWM--SEEDFEKAFNARFPGCMKGRTMYVIP 134
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 122
Score = 25.0 bits (54), Expect = 2.8
Identities = 6/60 (10%), Positives = 15/60 (25%), Gaps = 2/60 (3%)
Query: 49 GHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYEL--YDPCTCMFFFRNK 106
+ ++ E S + + I + ++ Y+L F
Sbjct: 34 YGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGD 93
>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed
(Chenopodium album) [TaxId: 3559]}
Length = 81
Score = 24.5 bits (53), Expect = 3.3
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 10 FLNKCDADDDHLITLKEWARCLELNEDEIED 40
+ + D D D I+ E+ N ++D
Sbjct: 46 MMAEIDTDGDGFISFDEFTDFARANRGLVKD 76
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 99
Score = 24.4 bits (53), Expect = 4.5
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 51 DWDPTCMKMDEVLYSIAEKVKNFAVIY 77
+ K + L I+ ++ V Y
Sbjct: 56 RFQEAANKQKQELDEISTNIRQAGVQY 82
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 24.6 bits (53), Expect = 4.9
Identities = 7/73 (9%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 62 VLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKIN 121
V +I ++ + ++ + + P++ ++ + G +
Sbjct: 16 VADAIIKQ-PDMKLVGVAKTS--PNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVE 72
Query: 122 WALEDKQEMIDIV 134
++ DIV
Sbjct: 73 DLIKT----SDIV 81
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}
Length = 201
Score = 24.8 bits (53), Expect = 5.1
Identities = 7/39 (17%), Positives = 12/39 (30%)
Query: 1 MALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIE 39
E DD +T KE+ N++ +
Sbjct: 145 NTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILR 183
>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 166
Score = 24.5 bits (52), Expect = 6.0
Identities = 9/88 (10%), Positives = 22/88 (25%), Gaps = 2/88 (2%)
Query: 44 DVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITKVPDFNKMYELYDPCTCMFFF 103
++ G W P C L N + + D + L +
Sbjct: 57 RLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLV 116
Query: 104 RNKHIMIDLGTGNNNKINWALEDKQEMI 131
++ + + L+ + +
Sbjct: 117 LDEEFNLLGRFV--ERPQAVLDGGPQAL 142
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 84
Score = 23.2 bits (50), Expect = 8.0
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 22 ITLKEWARCLELNEDEIEDQCEDVIRFGH 50
IT +E LE+ + E +I G
Sbjct: 31 ITFEELGALLEIPAAKAEKIASQMITEGR 59
>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB
{Human (Homo sapiens) [TaxId: 9606]}
Length = 180
Score = 24.0 bits (51), Expect = 8.1
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 3 LEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIE 39
++ I L + D D D I L E+ + + D
Sbjct: 138 MKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFAS 174
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer
protein 13 {Human (Homo sapiens) [TaxId: 9606]}
Length = 197
Score = 24.2 bits (52), Expect = 8.5
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 35 EDEIEDQCEDVIRFGHDWDPTCMKMDEV 62
E V+R H WD ++ V
Sbjct: 53 EAPPSVVLNRVLRERHLWDEDFVQWKVV 80
>d2qlva1 d.129.6.2 (A:460-630) Carbon catabolite-derepressing
protein kinase SNF1 {Saccharomyces cerevisiae [TaxId:
4932]}
Length = 171
Score = 23.8 bits (51), Expect = 9.7
Identities = 10/28 (35%), Positives = 11/28 (39%), Gaps = 6/28 (21%)
Query: 54 PTCMKMDEVLYSIAEKVKNFAVIYLVDI 81
P MKM L+ I YLVD
Sbjct: 104 PDLMKMVIQLFQIETNN------YLVDF 125
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.448
Gapped
Lambda K H
0.267 0.0448 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 680,150
Number of extensions: 32374
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 37
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.4 bits)