BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4162
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 16/137 (11%)
Query: 49 LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPN 108
L G + R L L N I + LD++ D + + +S+N I ++ N
Sbjct: 66 LSGMENLRILSLGRNLIKKIENLDAVA-------DTLEELWISYNQIASLSG--IEKLVN 116
Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI-------EKIREYRAVVSTMIPQL 161
L++LY+ N+I + + L ++ L L L GNP+ EYR V +P L
Sbjct: 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176
Query: 162 VTLDSVFILPSEKQETN 178
LD + + E+++ N
Sbjct: 177 KKLDGMPVDVDEREQAN 193
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 16/137 (11%)
Query: 49 LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPN 108
L G + R L L N I + LD++ D + + +S+N I ++ N
Sbjct: 67 LSGMENLRILSLGRNLIKKIENLDAVA-------DTLEELWISYNQIASLSG--IEKLVN 117
Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI-------EKIREYRAVVSTMIPQL 161
L++LY+ N+I + + L ++ L L L GNP+ EYR V +P L
Sbjct: 118 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 177
Query: 162 VTLDSVFILPSEKQETN 178
LD + + E+++ N
Sbjct: 178 KKLDGMPVDVDEREQAN 194
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%)
Query: 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR 148
+LS N I + + PNLK L L N+I++ ++ L+++ +L++L L+ + +
Sbjct: 75 ELSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 134
Query: 149 EYRAVVSTMIPQLVTLDS 166
YR V ++PQ++ LD
Sbjct: 135 AYRENVFKLLPQVMYLDG 152
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 107 PNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDS 166
PNL L L N+I++ ++ L+++ +L++L L+ + + +YR V ++PQL LD
Sbjct: 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 106 FPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
PNL L L N++++ ++ L+++ L++L L+ + + +YR V ++PQL LD
Sbjct: 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153
Query: 166 SVFILPSEKQETNALNAE 183
E QE +AE
Sbjct: 154 GY---DREDQEAPDSDAE 168
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 9/113 (7%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+DLSFN ++++ F +FP L++L L + +I+ + + ++ L TL L GNPI+ +
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSL 93
Query: 148 REYRAVVSTMIPQLVTLDS------VFILPSEK--QETNALNAEIRSYLLPKY 192
+ + +LV L++ F + K +E N + I+S+ LP+Y
Sbjct: 94 ALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 146
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+DLSFN ++++ F +FP L++L L + +I+ + + ++ L TL L GNPI+ +
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSL 92
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+DLSFN ++++ F +FP L++L L + +I+ + + ++ L TL L GNPI+ +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSL 91
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 50 VGRYDTRSLW-LSHN-KISLVYG-LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNF 106
+ + D + W L+H K++L L S+ R + D + +DLS+N+I+ + F
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370
Query: 107 PNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNP 143
PNLK L L NQ++ + + R+ SL+ + L+ NP
Sbjct: 371 PNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNP 406
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 60 LSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI 119
+ +N I + GL H+ P + ++DLS N+I +++ F+ +L+ L ++
Sbjct: 11 IGYNAICINRGL----HQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFL-----KV 61
Query: 120 EEYLSVFVLRRVNSLRTLS 138
E+ V+R N+ R LS
Sbjct: 62 EQQTPGLVIRN-NTFRGLS 79
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 60/113 (53%), Gaps = 9/113 (7%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+DLSFN ++++ F +FP L++L L + +I+ + + ++ L TL L GNPI+ +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 148 REYRAVVSTMIPQLVTLDS------VFILPSEK--QETNALNAEIRSYLLPKY 192
+ + +LV +++ F + K +E N + I+S+ LP+Y
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 60/113 (53%), Gaps = 9/113 (7%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+DLSFN ++++ F +FP L++L L + +I+ + + ++ L TL L GNPI+ +
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSL 115
Query: 148 REYRAVVSTMIPQLVTLDS------VFILPSEK--QETNALNAEIRSYLLPKY 192
+ + +LV +++ F + K +E N + I+S+ LP+Y
Sbjct: 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 168
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+DLSFN ++++ F +FP L++L L + +I+ + + ++ L TL L GNPI+ +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSL 91
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+DLS+N ++++ F +FP L++L L + +I+ + + ++ L TL L GNPI+ +
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSL 93
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+DLS+N ++++ F +FP L++L L + +I+ + + ++ L TL L GNPI+ +
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSL 92
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%)
Query: 93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRA 152
N I + + + P+L L L N + E + L + SL L + NP+ + YR
Sbjct: 74 NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 133
Query: 153 VVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSYLLPK 191
V +PQ+ LD + E+QE + R L K
Sbjct: 134 YVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAK 172
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIE 145
LS N+ + + NFP+L LY+ N + +L V L ++ +L+TL L N IE
Sbjct: 305 LSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIE 360
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 11/86 (12%)
Query: 60 LSHNKI-SLVYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKN 117
L+HN++ SL G+ D L + T LD LS+N ++++ + +F LK L L++N
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELD--------LSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 118 QIEEYLSVFVLRRVNSLRTLSLYGNP 143
Q++ + V R+ SL+ + L+ NP
Sbjct: 192 QLKS-VPDGVFDRLTSLQYIWLHDNP 216
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 54 DTRSLWLSHNKISLV-YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKIL 112
D L+L N+ +LV L + H T+ IDLS N I + F+N L L
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTL--------IDLSNNRISTLSNQSFSNMTQLLTL 83
Query: 113 YLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
L N++ + + SLR LSL+GN I + E
Sbjct: 84 ILSYNRL-RCIPPRTFDGLKSLRLLSLHGNDISVVPE 119
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 54 DTRSLWLSHNKISLVYGLDSLVHRTILD----------PDLIGW-----IDLSFNNIKNV 98
D R L L+H ++++ L+ L+ T LD P L + S N ++NV
Sbjct: 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 501
Query: 99 DKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMI 158
D N P L+ L L N++++ ++ L L L+L GN + + + ++ M+
Sbjct: 502 DG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559
Query: 159 PQLVTL 164
P + ++
Sbjct: 560 PSVSSI 565
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 54 DTRSLWLSHNKISLVYGLDSLVHRTILD----------PDLIGW-----IDLSFNNIKNV 98
D R L L+H ++++ L+ L+ T LD P L + S N ++NV
Sbjct: 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 501
Query: 99 DKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMI 158
D N P L+ L L N++++ ++ L L L+L GN + + + ++ M+
Sbjct: 502 DG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559
Query: 159 PQLVTL 164
P + ++
Sbjct: 560 PSVSSI 565
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
+ L N IK + MF LK L L+ NQI + +NSL +L+L NP
Sbjct: 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPF 138
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
++L N + ++ N F +++ L L +N+I+E +S + ++ L+TL+LY N I +
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISCV 117
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ LS N I+++ +F L ILYLH+N+++ L V ++ L+ L+L N
Sbjct: 57 LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALDTN----- 110
Query: 148 REYRAVVSTMIPQLVTLDSVFI 169
+ ++V + +L +L +++
Sbjct: 111 -QLKSVPDGIFDRLTSLQKIWL 131
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 99 DKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
D N + P L+ LYL N+I + + VL R+ L TLSL N I +I
Sbjct: 124 DINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQIRRI 169
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY 150
NN++ + N F + NL L+LH N+I + R ++SL L L+ N + ++ +
Sbjct: 138 NNLQALPDNTFRDLGNLTHLFLHGNRIPS-VPEHAFRGLHSLDRLLLHQNHVARVHPH 194
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
IDLSFN +K + F+NF L+ L L + +IE + ++ L L L GNPI+
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSF 95
Query: 148 REYRAVVSTMIPQLVTLDS 166
T + LV +++
Sbjct: 96 SPGSFSGLTSLENLVAVET 114
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
IDLSFN +K + F+NF L+ L L + +IE + ++ L L L GNPI+
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSF 90
Query: 148 REYRAVVSTMIPQLVTLDS 166
T + LV +++
Sbjct: 91 SPGSFSGLTSLENLVAVET 109
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 70 GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129
GL +L T + W++L +N ++ + +F + L L L NQ+ L + V
Sbjct: 46 GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFD 104
Query: 130 RVNSLRTLSLYGNPIEKI 147
+ L L L GN ++ +
Sbjct: 105 HLTQLDKLYLGGNQLKSL 122
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR 148
L+ N ++++ F NL+ L L NQ++ + R+ L+T++L+GN + R
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDCSR 195
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+D+ FN I ++ + P LK+L L N++ + LS +L L L N I+KI
Sbjct: 64 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKI 122
Query: 148 REYRAVVSTMIPQLVTLD 165
+ V L+TLD
Sbjct: 123 KNNPFVKQ---KNLITLD 137
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLS-----VFVLRRVNSLRTLS 138
+DLS+NN+ V + F P L+ +L N I+ S +F +R +N R+ +
Sbjct: 263 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 318
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 16/78 (20%)
Query: 58 LWLSHNKISLVYGLDSLVHRTILDPDLIGW----------------IDLSFNNIKNVDKN 101
LW N +Y L L H IL+ + G+ IDL NN+ + +
Sbjct: 529 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 588
Query: 102 MFTNFPNLKILYLHKNQI 119
+F N +LK L L KN I
Sbjct: 589 VFNNQVSLKSLNLQKNLI 606
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+D+ FN I ++ + P LK+L L N++ + LS +L L L N I+KI
Sbjct: 59 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKI 117
Query: 148 REYRAVVSTMIPQLVTLD 165
+ V L+TLD
Sbjct: 118 KNNPFVKQ---KNLITLD 132
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLS-----VFVLRRVNSLRTLS 138
+DLS+NN+ V + F P L+ +L N I+ S +F +R +N R+ +
Sbjct: 258 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 313
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 16/78 (20%)
Query: 58 LWLSHNKISLVYGLDSLVHRTILDPDLIGW----------------IDLSFNNIKNVDKN 101
LW N +Y L L H IL+ + G+ IDL NN+ + +
Sbjct: 524 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 583
Query: 102 MFTNFPNLKILYLHKNQI 119
+F N +LK L L KN I
Sbjct: 584 VFNNQVSLKSLNLQKNLI 601
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 99 DKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
D N + P L+ LYL N+I + + VL R+ L TLSL N I I
Sbjct: 144 DINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDI 189
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 99 DKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
D N + P L+ LYL N+I + + VL R+ L TLSL N I I
Sbjct: 144 DINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDI 189
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 70 GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129
GL +L T + W++L +N ++ + +F + L L L NQ+ L + V
Sbjct: 46 GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFD 104
Query: 130 RVNSLRTLSLYGNPIEKI 147
+ L L L GN ++ +
Sbjct: 105 HLTQLDKLYLGGNQLKSL 122
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR 148
L+ N ++++ F NL+ L L NQ++ + R+ L+T++L+GN + R
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDCSR 195
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+D+ FN I ++ + P LK+L L N++ + LS +L L L N I+KI
Sbjct: 54 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKI 112
Query: 148 REYRAVVSTMIPQLVTLD 165
+ V L+TLD
Sbjct: 113 KNNPFVKQ---KNLITLD 127
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLS-----VFVLRRVNSLRTLS 138
+DLS+NN+ V + F P L+ +L N I+ S +F +R +N R+ +
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 16/78 (20%)
Query: 58 LWLSHNKISLVYGLDSLVHRTILDPDLIGW----------------IDLSFNNIKNVDKN 101
LW N +Y L L H IL+ + G+ IDL NN+ + +
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578
Query: 102 MFTNFPNLKILYLHKNQI 119
+F N +LK L L KN I
Sbjct: 579 VFNNQVSLKSLNLQKNLI 596
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 99 DKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
D N + P L+ LYL N+I + + VL R+ L TLSL N I I
Sbjct: 144 DINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDI 189
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 99 DKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
D N + P L+ LYL N+I + + VL R+ L TLSL N I I
Sbjct: 121 DINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDI 166
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 99 DKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
D N + P L+ LYL N+I + + VL R+ L TLSL N I I
Sbjct: 124 DINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDI 169
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 99 DKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
D N + P L+ LYL N+I + + VL R+ L TLSL N I I
Sbjct: 126 DINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDI 171
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 99 DKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
D N + P L+ LYL N+I + + VL R+ L TLSL N I I
Sbjct: 146 DINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDI 191
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 99 DKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
D N + P L+ LYL N+I + + VL R+ L TLSL N I I
Sbjct: 121 DINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDI 166
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 99 DKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
D N + P L+ LYL N+I + + VL R+ L TLSL N I I
Sbjct: 126 DINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDI 171
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 99 DKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
D N + P L+ LYL N+I + + VL R+ L TLSL N I I
Sbjct: 123 DINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDI 168
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSL 139
+DLS+NN+ +V F+ P+L+ L L N I+ LS +++LR LSL
Sbjct: 253 LDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQR-LSPRSFYGLSNLRYLSL 303
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLS-------VFVLRRVNSLRTLSLY 140
+DLS NNI N+++++ NL+IL N + V L+ ++ L L+L
Sbjct: 485 LDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLE 544
Query: 141 GNPIEKI 147
N +++I
Sbjct: 545 SNGLDEI 551
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+DL N IK ++++ F +FP+L+ L L++N I + + +LRTL L N ++ I
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 25 QSLDKV-AVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPD 83
Q LD++ +++ + RL P L+ D R+L SH + L ++ + D +
Sbjct: 117 QHLDRLHGLKRFRFTTRRLTHIPANLL--TDMRNL--SH--LELRANIEEMPSHLFDDLE 170
Query: 84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNP 143
+ I+ N ++ + + +F P LK L L NQ++ + + R+ SL+ + L+ NP
Sbjct: 171 NLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKS-VPDGIFDRLTSLQKIWLHTNP 229
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI 119
+ LSFN+I VD N P+L+ L+L+ N++
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI 119
+ LSFN+I VD N P+L+ L+L+ N++
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
+ FN I+ + ++F N P L +L L +N + L + L TLS+ N +E+I +
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIED 164
Query: 150 --YRAVVSTMIPQL 161
++A S QL
Sbjct: 165 DTFQATTSLQNLQL 178
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 30/102 (29%)
Query: 61 SHNKISLVYG-------LDSLVHRTILD-------PDLIGWIDLSFNNIKNVDKNMFTNF 106
SHN I++V G + L H + D P L+ +DLS+N ++ + + F
Sbjct: 219 SHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVE-VDLSYNELEKIMYHPFVKM 277
Query: 107 PNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR 148
L+ LY+ N+ L L+LYG PI ++
Sbjct: 278 QRLERLYISNNR---------------LVALNLYGQPIPTLK 304
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
+ FN I+ + ++F N P L +L L +N + L + L TLS+ N +E+I +
Sbjct: 100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIED 158
Query: 150 --YRAVVSTMIPQL 161
++A S QL
Sbjct: 159 DTFQATTSLQNLQL 172
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 14/86 (16%)
Query: 6 KTSIDPEFKIPLDLSFQQIQSLDK-------VAVQKLKPNVHR----LGESPPMLVGRYD 54
K ++P F+ P DL Q+Q+L K +AVQK V LG +L+ Y
Sbjct: 432 KELLEPSFEEPEDLELHQVQNLKKLALMVAGLAVQKYGQGVEEEQEVLGAVADILIDAYA 491
Query: 55 TRSLWLSHNKISLVYGLDSLVHRTIL 80
S L ++ GL ++ R L
Sbjct: 492 AESALLRARRLG---GLAPVLARIYL 514
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
L+ N ++NV MF +LK L L N+I + ++S+R LSLY N I +
Sbjct: 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTV 144
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNP 143
+ L+ N I +D N F +LK L L NQ++ + + R+ SL+ + L+ NP
Sbjct: 304 LTLAQNEINKIDDNAFWGLTHLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNP 358
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 60 LSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI 119
+ +N I + GL H+ P + ++DLS N+I +++ F+ +L+ L ++
Sbjct: 11 IGYNAICINRGL----HQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFL-----KV 61
Query: 120 EEYLSVFVLRRVNSLRTLS 138
E+ V+R N+ R LS
Sbjct: 62 EQQTPGLVIRN-NTFRGLS 79
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 82 PDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYG 141
P ++DL N++K++ +F +L LYL N+++ L V ++ SL L+L
Sbjct: 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLST 85
Query: 142 NPIEKI 147
N ++ +
Sbjct: 86 NQLQSL 91
>pdb|3B21|A Chain A, Crystal Structure Of Ospi From Shigella Flexineri
Length = 220
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 117 NQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEK 174
N+I EY++ F R + + + + +P E ++R ++ I Q + SV ++ E+
Sbjct: 93 NEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQ 150
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEY 122
N+I VD+N F + L+ LYL +NQI +
Sbjct: 122 NHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151
>pdb|3SIM|A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
pdb|3SIM|B Chain B, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
Length = 275
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 22/160 (13%)
Query: 7 TSIDPEFKIPLDLSFQQIQSLDKV-AVQKLKPNVHRLGESPPMLVG----RYDTRSL--W 59
TS + +F + D S I D++ A++ PNV VG ++ S+ W
Sbjct: 46 TSTNGKFNVFWDSS---ILGPDQISAIKSSHPNVRVAVSLGGASVGSNTVQFQAASVDSW 102
Query: 60 LSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI 119
+S+ SL ++ R LD ID+ + + +N DKN F I L KN +
Sbjct: 103 VSNAVTSLT----RIIQRYNLDG-----IDIDYEHFQNTDKNTFAECIGRLITTLKKNGV 153
Query: 120 EEYLSVFVLRRVNS--LRTLSLYGNPIEKIR-EYRAVVST 156
+ S+ V+ L + Y N I I +++A S+
Sbjct: 154 ISFASISPFPSVDEYYLALFNEYKNAINHINYQFKAYDSS 193
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
+ R L L NK+ + L L + T ++ L+ N ++++ +F NLK L
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLT--------YLILTGNQLQSLPNGVFDKLTNLKELV 115
Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
L +NQ++ L V ++ +L L LY N ++ +
Sbjct: 116 LVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQSL 148
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRA 152
N I ++ +F + NLK LYL NQ+ L V V + L L L N +
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTN------QLTV 102
Query: 153 VVSTMIPQLVTLDSVFILPSEKQE 176
+ S + +LV L +F+ ++ E
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTE 126
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
+L +D+ NN + D N NL L L NQI + + L+ + +L L L N
Sbjct: 83 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSN 139
Query: 143 PIEKIREYRAVVS 155
I I + S
Sbjct: 140 TISDISALSGLTS 152
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 98 VDKNMFTNFPNLKIL--------YLHKNQIEEYLSVFVLR 129
+DK F N PNL+IL +LH + + +F LR
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
+L +D+ NN + D N NL L L NQI + + L+ + +L L L N
Sbjct: 87 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSN 143
Query: 143 PIEKIREYRAVVS 155
I I + S
Sbjct: 144 TISDISALSGLTS 156
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
+L +D+ NN + D N NL L L NQI + + L+ + +L L L N
Sbjct: 88 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSN 144
Query: 143 PIEKIREYRAVVS 155
I I + S
Sbjct: 145 TISDISALSGLTS 157
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
+L +D+ NN + D N NL L L NQI + + L+ + +L L L N
Sbjct: 83 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSN 139
Query: 143 PIEKIREYRAVVS 155
I I + S
Sbjct: 140 TISDISALSGLTS 152
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
+L +D+ NN + D N NL L L NQI + + L+ + +L L L N
Sbjct: 83 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSN 139
Query: 143 PIEKIREYRAVVS 155
I I + S
Sbjct: 140 TISDISALSGLTS 152
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
+L +D+ NN + D N NL L L NQI + + L+ + +L L L N
Sbjct: 83 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSN 139
Query: 143 PIEKIREYRAVVS 155
I I + S
Sbjct: 140 TISDISALSGLTS 152
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
+L +D+ NN + D N NL L L NQI + + L+ + +L L L N
Sbjct: 83 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSN 139
Query: 143 PIEKIREYRAVVS 155
I I + S
Sbjct: 140 TISDISALSGLTS 152
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 16/77 (20%)
Query: 46 PPMLVGRYDTRSLWLSHNKISLVY-----GLDSLVHRTILDPDLIGWIDLSFNNIKNVDK 100
P G + LW+ ++++SL+ GL SLV ++L+ NN+ ++
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE-----------LNLAHNNLSSLPH 283
Query: 101 NMFTNFPNLKILYLHKN 117
++FT L L+LH N
Sbjct: 284 DLFTPLRYLVELHLHHN 300
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 60 LSHNKISLVYGLDSL----VHRTILDPDLIGW-----IDLSFNNIKNVDKNMFTNFPNLK 110
+S N GL L H + L L+G + LS N +N+ + +NFP+L
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328
Query: 111 ILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIE 145
L + N L L + +LR L L + IE
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,862,055
Number of Sequences: 62578
Number of extensions: 227818
Number of successful extensions: 693
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 148
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)