Query psy4162
Match_columns 210
No_of_seqs 151 out of 3290
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 18:29:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14580 LRR_9: Leucine-rich r 99.8 1.5E-19 3.2E-24 132.9 4.9 143 14-182 21-163 (175)
2 KOG4194|consensus 99.6 7.3E-16 1.6E-20 128.9 5.6 156 9-174 75-236 (873)
3 KOG4194|consensus 99.5 1.7E-15 3.6E-20 126.7 0.4 23 15-37 200-222 (873)
4 KOG1644|consensus 99.4 1.4E-13 3.1E-18 101.3 4.1 121 54-182 43-163 (233)
5 PF14580 LRR_9: Leucine-rich r 99.4 2.5E-13 5.5E-18 100.0 2.9 114 54-179 20-133 (175)
6 KOG4237|consensus 99.3 2.8E-14 6.1E-19 114.4 -5.6 133 11-170 66-199 (498)
7 KOG0444|consensus 99.3 2E-13 4.4E-18 115.6 -1.4 148 14-175 105-261 (1255)
8 PLN00113 leucine-rich repeat r 99.3 1.4E-11 3E-16 113.3 9.0 91 77-171 206-296 (968)
9 KOG0617|consensus 99.3 2.9E-13 6.2E-18 97.8 -1.8 142 15-171 36-185 (264)
10 KOG1259|consensus 99.2 1.9E-12 4.1E-17 101.2 0.6 135 15-160 287-427 (490)
11 PLN00113 leucine-rich repeat r 99.2 3.2E-11 7E-16 111.0 8.7 114 50-173 209-322 (968)
12 KOG1259|consensus 99.2 2.1E-12 4.4E-17 100.9 -0.3 109 50-172 304-412 (490)
13 KOG0618|consensus 99.2 3.6E-12 7.7E-17 111.7 -1.1 108 50-170 380-487 (1081)
14 KOG0472|consensus 99.1 3E-12 6.5E-17 103.3 -2.7 111 50-175 203-313 (565)
15 PF13855 LRR_8: Leucine rich r 99.1 8.2E-11 1.8E-15 71.8 4.0 59 55-119 3-61 (61)
16 KOG0617|consensus 99.1 6.4E-12 1.4E-16 90.9 -1.1 127 14-149 58-190 (264)
17 PF13855 LRR_8: Leucine rich r 99.1 1.1E-10 2.4E-15 71.2 3.7 61 83-144 1-61 (61)
18 KOG0444|consensus 99.1 6.8E-12 1.5E-16 106.5 -2.6 90 50-149 219-310 (1255)
19 KOG0618|consensus 99.1 8.9E-12 1.9E-16 109.3 -2.0 150 13-175 311-468 (1081)
20 KOG4237|consensus 99.1 2.3E-11 4.9E-16 98.0 -0.1 126 15-170 49-175 (498)
21 KOG0472|consensus 99.0 6E-11 1.3E-15 95.9 0.3 148 13-173 389-542 (565)
22 PRK15387 E3 ubiquitin-protein 99.0 1.1E-09 2.4E-14 97.3 6.3 149 11-175 301-461 (788)
23 KOG0532|consensus 98.9 2.8E-10 6.1E-15 95.5 -0.7 124 17-174 126-249 (722)
24 PLN03150 hypothetical protein; 98.8 1.7E-08 3.8E-13 88.7 8.3 106 54-170 419-526 (623)
25 KOG1859|consensus 98.8 3.6E-10 7.9E-15 97.4 -2.5 124 17-173 169-293 (1096)
26 KOG2123|consensus 98.8 6E-10 1.3E-14 86.3 -1.6 116 52-177 18-135 (388)
27 PRK15387 E3 ubiquitin-protein 98.7 2.5E-08 5.4E-13 88.8 7.5 114 15-149 204-319 (788)
28 PLN03150 hypothetical protein; 98.7 3.8E-08 8.2E-13 86.6 8.6 107 16-146 422-529 (623)
29 PRK15370 E3 ubiquitin-protein 98.7 2.6E-08 5.6E-13 88.8 7.6 76 84-172 263-338 (754)
30 PRK15370 E3 ubiquitin-protein 98.7 1.9E-08 4.2E-13 89.6 6.7 107 53-175 325-431 (754)
31 KOG1859|consensus 98.6 1.9E-09 4.2E-14 93.0 -3.5 112 16-155 191-302 (1096)
32 KOG0532|consensus 98.6 1.9E-09 4.1E-14 90.7 -3.6 144 13-172 76-224 (722)
33 cd00116 LRR_RI Leucine-rich re 98.6 9.2E-08 2E-12 77.1 5.9 38 83-120 137-178 (319)
34 KOG2739|consensus 98.6 5.1E-08 1.1E-12 74.9 3.8 112 51-170 41-154 (260)
35 KOG2982|consensus 98.6 2E-08 4.3E-13 78.7 1.5 80 103-182 220-302 (418)
36 cd00116 LRR_RI Leucine-rich re 98.5 3.5E-07 7.6E-12 73.7 7.0 120 52-174 164-293 (319)
37 KOG3207|consensus 98.5 4.5E-08 9.8E-13 80.1 0.8 168 14-186 199-381 (505)
38 KOG0531|consensus 98.4 1.1E-07 2.3E-12 80.0 3.0 118 50-182 92-209 (414)
39 KOG1644|consensus 98.4 2.4E-07 5.2E-12 68.8 4.3 109 55-175 21-129 (233)
40 KOG4579|consensus 98.4 1.4E-08 3.1E-13 71.0 -2.2 109 55-173 29-137 (177)
41 COG4886 Leucine-rich repeat (L 98.4 9E-08 2E-12 79.8 1.9 107 50-171 160-289 (394)
42 COG4886 Leucine-rich repeat (L 98.4 1.7E-07 3.7E-12 78.1 1.9 80 54-143 141-220 (394)
43 KOG4579|consensus 98.3 4.6E-08 1E-12 68.4 -1.6 108 16-149 31-140 (177)
44 PLN03210 Resistant to P. syrin 98.3 3E-06 6.4E-11 79.7 9.7 103 50-170 799-904 (1153)
45 KOG3207|consensus 98.3 7.7E-08 1.7E-12 78.8 -0.7 160 14-179 148-321 (505)
46 PLN03210 Resistant to P. syrin 98.3 2.6E-06 5.6E-11 80.2 9.0 79 53-142 611-691 (1153)
47 KOG0531|consensus 98.3 3.7E-07 8.1E-12 76.7 2.2 109 52-176 71-179 (414)
48 PF12799 LRR_4: Leucine Rich r 98.3 1.1E-06 2.4E-11 49.6 3.4 39 54-99 2-40 (44)
49 PF12799 LRR_4: Leucine Rich r 98.1 3.6E-06 7.7E-11 47.5 3.7 39 108-148 2-40 (44)
50 KOG2982|consensus 98.1 8.2E-07 1.8E-11 69.9 0.8 126 50-182 68-196 (418)
51 KOG4658|consensus 97.7 3.7E-05 8E-10 70.1 4.6 107 50-166 568-675 (889)
52 KOG4658|consensus 97.6 3.1E-05 6.7E-10 70.6 2.6 108 50-169 542-652 (889)
53 KOG3665|consensus 97.6 9.7E-05 2.1E-09 65.8 5.3 120 50-176 145-267 (699)
54 KOG1909|consensus 97.5 0.00014 3E-09 58.5 4.5 117 54-173 186-312 (382)
55 PF13306 LRR_5: Leucine rich r 97.5 0.00026 5.6E-09 49.3 5.5 99 54-167 13-111 (129)
56 KOG1909|consensus 97.4 0.00034 7.3E-09 56.3 5.2 123 52-176 156-287 (382)
57 KOG3665|consensus 97.3 0.00013 2.8E-09 65.0 2.4 125 52-187 121-248 (699)
58 PF13306 LRR_5: Leucine rich r 97.3 0.00046 1E-08 48.0 4.8 97 50-161 32-128 (129)
59 PRK15386 type III secretion pr 97.1 0.0012 2.6E-08 55.0 6.0 15 14-28 54-68 (426)
60 KOG2739|consensus 96.8 0.00091 2E-08 51.8 2.8 87 83-173 43-130 (260)
61 KOG2123|consensus 96.8 8.4E-05 1.8E-09 58.3 -3.2 91 82-179 18-108 (388)
62 PRK15386 type III secretion pr 96.6 0.009 1.9E-07 50.0 6.9 59 52-123 51-111 (426)
63 KOG3763|consensus 96.3 0.0035 7.6E-08 53.5 3.2 90 81-171 216-313 (585)
64 COG5238 RNA1 Ran GTPase-activa 96.1 0.019 4.1E-07 45.3 5.8 121 50-172 89-227 (388)
65 PF00560 LRR_1: Leucine Rich R 95.7 0.0086 1.9E-07 28.1 1.7 16 55-70 2-17 (22)
66 COG5238 RNA1 Ran GTPase-activa 95.5 0.031 6.7E-07 44.1 4.9 146 14-174 32-200 (388)
67 PF13504 LRR_7: Leucine rich r 95.4 0.012 2.5E-07 25.8 1.5 16 54-69 2-17 (17)
68 PF00560 LRR_1: Leucine Rich R 95.2 0.007 1.5E-07 28.4 0.4 17 85-101 2-18 (22)
69 smart00369 LRR_TYP Leucine-ric 94.8 0.026 5.7E-07 27.5 2.0 19 83-101 2-20 (26)
70 smart00370 LRR Leucine-rich re 94.8 0.026 5.7E-07 27.5 2.0 19 83-101 2-20 (26)
71 KOG2120|consensus 94.6 0.0019 4.2E-08 51.3 -3.8 124 54-182 186-336 (419)
72 KOG0473|consensus 94.6 0.00069 1.5E-08 52.0 -6.1 88 79-173 38-125 (326)
73 smart00369 LRR_TYP Leucine-ric 94.3 0.037 7.9E-07 27.0 1.7 18 53-70 2-19 (26)
74 smart00370 LRR Leucine-rich re 94.3 0.037 7.9E-07 27.0 1.7 18 53-70 2-19 (26)
75 KOG0473|consensus 94.1 0.00086 1.9E-08 51.5 -6.5 104 15-145 21-124 (326)
76 KOG3864|consensus 92.4 0.031 6.8E-07 42.0 -0.4 83 84-170 102-187 (221)
77 smart00365 LRR_SD22 Leucine-ri 92.2 0.14 3.1E-06 25.1 2.0 18 54-71 3-20 (26)
78 KOG1947|consensus 89.6 0.27 5.8E-06 41.7 2.6 16 155-170 291-306 (482)
79 KOG1947|consensus 87.5 0.44 9.4E-06 40.4 2.5 117 50-169 211-331 (482)
80 PF13516 LRR_6: Leucine Rich r 86.3 0.43 9.3E-06 22.5 1.1 14 54-67 3-16 (24)
81 smart00364 LRR_BAC Leucine-ric 86.3 0.6 1.3E-05 22.9 1.5 17 84-100 3-19 (26)
82 smart00446 LRRcap occurring C- 85.7 0.7 1.5E-05 22.6 1.6 22 148-169 2-23 (26)
83 KOG3864|consensus 85.4 0.1 2.2E-06 39.3 -2.1 84 55-145 103-189 (221)
84 KOG3763|consensus 80.5 1.1 2.4E-05 38.9 1.9 68 50-121 215-284 (585)
85 TIGR00864 PCC polycystin catio 79.2 0.6 1.3E-05 47.6 -0.0 37 113-150 1-37 (2740)
86 TIGR00864 PCC polycystin catio 77.9 1.7 3.7E-05 44.6 2.5 34 89-122 1-34 (2740)
87 smart00368 LRR_RI Leucine rich 77.0 1.9 4.1E-05 21.3 1.4 14 54-67 3-16 (28)
88 KOG2120|consensus 71.0 1 2.2E-05 36.4 -0.7 84 84-170 186-271 (419)
89 smart00367 LRR_CC Leucine-rich 45.5 21 0.00045 16.9 1.7 12 159-170 2-13 (26)
90 KOG4341|consensus 31.7 70 0.0015 27.4 3.7 75 105-182 370-449 (483)
91 KOG4308|consensus 25.3 3.5 7.5E-05 35.7 -5.0 14 53-66 115-128 (478)
No 1
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.78 E-value=1.5e-19 Score=132.94 Aligned_cols=143 Identities=31% Similarity=0.426 Sum_probs=73.2
Q ss_pred CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN 93 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n 93 (210)
...|++.+|.|+.+..... .+.. |+.|++++|.|+.+++ +..++.|+.|++++|
T Consensus 21 ~~~L~L~~n~I~~Ie~L~~-~l~~-----------------L~~L~Ls~N~I~~l~~--------l~~L~~L~~L~L~~N 74 (175)
T PF14580_consen 21 LRELNLRGNQISTIENLGA-TLDK-----------------LEVLDLSNNQITKLEG--------LPGLPRLKTLDLSNN 74 (175)
T ss_dssp ---------------S--T-T-TT-------------------EEE-TTS--S--TT------------TT--EEE--SS
T ss_pred cccccccccccccccchhh-hhcC-----------------CCEEECCCCCCccccC--------ccChhhhhhcccCCC
Confidence 4569999999998877642 2345 9999999999999976 455689999999999
Q ss_pred CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162 94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE 173 (210)
Q Consensus 94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 173 (210)
+|+.+.......+++|+.|++++|+|..+..+..+..+++|+.|++.+||++..+.||..++..+|+|+.||...+...|
T Consensus 75 ~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~E 154 (175)
T PF14580_consen 75 RISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEEE 154 (175)
T ss_dssp ---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-B
T ss_pred CCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHHH
Confidence 99999765334689999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy4162 174 KQETNALNA 182 (210)
Q Consensus 174 ~~~~~~~~~ 182 (210)
+..+..++.
T Consensus 155 R~~A~~~f~ 163 (175)
T PF14580_consen 155 RQEAEKLFK 163 (175)
T ss_dssp ---------
T ss_pred hcccccccc
Confidence 998888776
No 2
>KOG4194|consensus
Probab=99.61 E-value=7.3e-16 Score=128.87 Aligned_cols=156 Identities=26% Similarity=0.183 Sum_probs=133.0
Q ss_pred CCCCCCcceeCCCCCccccchhhhcccCC-cccccCCCC---CC-C-CCCCCccEEEccCCccccccCCchhhhhccCCC
Q psy4162 9 IDPEFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESP---PM-L-VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDP 82 (210)
Q Consensus 9 ~~~~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~---~~-~-~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l 82 (210)
.-|-.+.+||+|+|.|.++....|.++++ ..+.++... .+ + ....+++.|+|.+|.|+++.. ..+..+
T Consensus 75 ~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~s------e~L~~l 148 (873)
T KOG4194|consen 75 FLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTS------EELSAL 148 (873)
T ss_pred cCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccH------HHHHhH
Confidence 34556778999999999999999988888 333333333 23 3 445669999999999999987 888899
Q ss_pred CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcc
Q psy4162 83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLV 162 (210)
Q Consensus 83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~ 162 (210)
+.|+.||||.|.|+.++...|+.-.+++.|+|++|+|+.+.. +.|..+.+|..|.|+.|.++.+|. ..++++++|+
T Consensus 149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~-~~F~~lnsL~tlkLsrNrittLp~---r~Fk~L~~L~ 224 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLET-GHFDSLNSLLTLKLSRNRITTLPQ---RSFKRLPKLE 224 (873)
T ss_pred hhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccc-ccccccchheeeecccCcccccCH---HHhhhcchhh
Confidence 999999999999999998888888999999999999999986 899999999999999999999998 6899999999
Q ss_pred cccCCCCCHHHH
Q psy4162 163 TLDSVFILPSEK 174 (210)
Q Consensus 163 ~L~l~~~~~~~~ 174 (210)
.||+..|.+..-
T Consensus 225 ~LdLnrN~iriv 236 (873)
T KOG4194|consen 225 SLDLNRNRIRIV 236 (873)
T ss_pred hhhccccceeee
Confidence 999998876443
No 3
>KOG4194|consensus
Probab=99.52 E-value=1.7e-15 Score=126.75 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=14.8
Q ss_pred cceeCCCCCccccchhhhcccCC
Q psy4162 15 IPLDLSFQQIQSLDKVAVQKLKP 37 (210)
Q Consensus 15 ~~L~ls~n~l~~l~~~~~~~l~~ 37 (210)
.+|.++.|+++.++...|.+++.
T Consensus 200 ~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 200 LTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred eeeecccCcccccCHHHhhhcch
Confidence 44667777777777766665544
No 4
>KOG1644|consensus
Probab=99.42 E-value=1.4e-13 Score=101.31 Aligned_cols=121 Identities=28% Similarity=0.354 Sum_probs=111.8
Q ss_pred CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS 133 (210)
Q Consensus 54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~ 133 (210)
....+||++|.+..+.. |..++.|++|.+.+|+|+.+.+..-..+++|..|.+.+|.|..+.++..+..+|+
T Consensus 43 ~~d~iDLtdNdl~~l~~--------lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN--------LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccceecccccchhhccc--------CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence 47889999999999865 6667999999999999999999866667899999999999999998888999999
Q ss_pred cCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHHHHHHHHH
Q psy4162 134 LRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNALNA 182 (210)
Q Consensus 134 L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 182 (210)
|+.|.+-+|++.....||..++..+|+|++||++++...||..+..|+.
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~~f~ 163 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEVFFK 163 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999983
No 5
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.37 E-value=2.5e-13 Score=100.00 Aligned_cols=114 Identities=27% Similarity=0.297 Sum_probs=49.5
Q ss_pred CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS 133 (210)
Q Consensus 54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~ 133 (210)
.++.|+|++|.|+.+.+++ ..+.+|+.|++++|.|+.+.. +..++.|+.|++++|+|+.+.+ .....+++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~-------~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~ 89 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLG-------ATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISE-GLDKNLPN 89 (175)
T ss_dssp ----------------S---------TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CH-HHHHH-TT
T ss_pred ccccccccccccccccchh-------hhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCcccc-chHHhCCc
Confidence 4899999999999997643 135789999999999999986 8889999999999999999863 32346899
Q ss_pred cCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHHHHHH
Q psy4162 134 LRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNA 179 (210)
Q Consensus 134 L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 179 (210)
|+.|++++|.|..+... ..++.+++|+.|++.+||+.+......
T Consensus 90 L~~L~L~~N~I~~l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~ 133 (175)
T PF14580_consen 90 LQELYLSNNKISDLNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRL 133 (175)
T ss_dssp --EEE-TTS---SCCCC--GGGGG-TT--EEE-TT-GGGGSTTHHH
T ss_pred CCEEECcCCcCCChHHh--HHHHcCCCcceeeccCCcccchhhHHH
Confidence 99999999999876553 357889999999999999987654443
No 6
>KOG4237|consensus
Probab=99.31 E-value=2.8e-14 Score=114.44 Aligned_cols=133 Identities=28% Similarity=0.266 Sum_probs=110.7
Q ss_pred CCCCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEEC
Q psy4162 11 PEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDL 90 (210)
Q Consensus 11 ~~~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~L 90 (210)
|..++.+++..|+|+.+|+..|..++. |+.||||+|.|+.+.+ +.|.++.++..|.+
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~-----------------LRrLdLS~N~Is~I~p------~AF~GL~~l~~Lvl 122 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHR-----------------LRRLDLSKNNISFIAP------DAFKGLASLLSLVL 122 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhh-----------------hceecccccchhhcCh------HhhhhhHhhhHHHh
Confidence 335667888888888888888877777 9999999999999887 88988888777666
Q ss_pred cC-CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCC
Q psy4162 91 SF-NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFI 169 (210)
Q Consensus 91 s~-n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~ 169 (210)
-+ |+|+.++.+.|+.+..++.|.+.-|.+.-... +.+..++++..|.+.+|.+..++. ..+..+..++.+++..|
T Consensus 123 yg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~-~al~dL~~l~lLslyDn~~q~i~~---~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 123 YGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQ-DALRDLPSLSLLSLYDNKIQSICK---GTFQGLAAIKTLHLAQN 198 (498)
T ss_pred hcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhH-HHHHHhhhcchhcccchhhhhhcc---ccccchhccchHhhhcC
Confidence 55 88999998889999999999888888888876 888899999999999999888876 46778888888888888
Q ss_pred C
Q psy4162 170 L 170 (210)
Q Consensus 170 ~ 170 (210)
+
T Consensus 199 p 199 (498)
T KOG4237|consen 199 P 199 (498)
T ss_pred c
Confidence 7
No 7
>KOG0444|consensus
Probab=99.30 E-value=2e-13 Score=115.58 Aligned_cols=148 Identities=20% Similarity=0.166 Sum_probs=99.4
Q ss_pred CcceeCCCCCccccchhhhcccCC-cccccC---CCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLG---ESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIG 86 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~---~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~ 86 (210)
.+.+|+|+|+++.+|...=. -.+ .++.++ +..++ +..|..|-.||||+|++..+| .....+.+|+
T Consensus 105 Lt~lDLShNqL~EvP~~LE~-AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP-------PQ~RRL~~Lq 176 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEY-AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP-------PQIRRLSMLQ 176 (1255)
T ss_pred ceeeecchhhhhhcchhhhh-hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC-------HHHHHHhhhh
Confidence 34577777777777664210 122 111111 11111 144555777888888888877 4566677788
Q ss_pred EEECcCCCCCcCCcccccCCCCccEEEccCCccC--ccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIE--EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL 164 (210)
Q Consensus 87 ~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L 164 (210)
.|.|++|.+....-..++.+.+|..|.+++++-+ .+| ..+.++.+|..++++.|.+..+|. .+..+++|+.|
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P--tsld~l~NL~dvDlS~N~Lp~vPe----cly~l~~LrrL 250 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP--TSLDDLHNLRDVDLSENNLPIVPE----CLYKLRNLRRL 250 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCC--CchhhhhhhhhccccccCCCcchH----HHhhhhhhhee
Confidence 8888888777766555677777888888777533 343 556778888889999998888887 78888888889
Q ss_pred cCCCCCHHHHH
Q psy4162 165 DSVFILPSEKQ 175 (210)
Q Consensus 165 ~l~~~~~~~~~ 175 (210)
++++|.+.+..
T Consensus 251 NLS~N~iteL~ 261 (1255)
T KOG0444|consen 251 NLSGNKITELN 261 (1255)
T ss_pred ccCcCceeeee
Confidence 99888876544
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.27 E-value=1.4e-11 Score=113.33 Aligned_cols=91 Identities=21% Similarity=0.214 Sum_probs=42.1
Q ss_pred hccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHH
Q psy4162 77 RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVST 156 (210)
Q Consensus 77 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 156 (210)
..+..+.+|+.|++++|++....+..++.+++|+.|++++|.+....+ ..++.+++|+.|++++|.+.+..+ ..+.
T Consensus 206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p---~~l~ 281 (968)
T PLN00113 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSGPIP---PSIF 281 (968)
T ss_pred hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC-hhHhCCCCCCEEECcCCeeeccCc---hhHh
Confidence 334444444444444444443333334444455555555554443332 344445555555555555543221 1445
Q ss_pred hCcCcccccCCCCCH
Q psy4162 157 MIPQLVTLDSVFILP 171 (210)
Q Consensus 157 ~l~~L~~L~l~~~~~ 171 (210)
.+++|+.|+++.|..
T Consensus 282 ~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 282 SLQKLISLDLSDNSL 296 (968)
T ss_pred hccCcCEEECcCCee
Confidence 555555555555543
No 9
>KOG0617|consensus
Probab=99.27 E-value=2.9e-13 Score=97.81 Aligned_cols=142 Identities=20% Similarity=0.201 Sum_probs=92.1
Q ss_pred cceeCCCCCccccchhhhcccCC----cccccCCCCCC-C-CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162 15 IPLDLSFQQIQSLDKVAVQKLKP----NVHRLGESPPM-L-VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI 88 (210)
Q Consensus 15 ~~L~ls~n~l~~l~~~~~~~l~~----~~~~~~~~~~~-~-~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L 88 (210)
++|.+|+|.++-+++..- .+.+ +.....+..++ + ++++.|+.|++.-|++..+| ..|+.++.|+.|
T Consensus 36 TrLtLSHNKl~~vppnia-~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lp-------rgfgs~p~levl 107 (264)
T KOG0617|consen 36 TRLTLSHNKLTVVPPNIA-ELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILP-------RGFGSFPALEVL 107 (264)
T ss_pred hhhhcccCceeecCCcHH-HhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCc-------cccCCCchhhhh
Confidence 458888888888777532 1222 00011122222 2 55555666666656555555 566666777777
Q ss_pred ECcCCCCCc--CCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccC
Q psy4162 89 DLSFNNIKN--VDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDS 166 (210)
Q Consensus 89 ~Ls~n~i~~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l 166 (210)
|+++|++.+ ++.. |-.+..|+.|.++.|.+.-++ ...+.+++|+.|.+.+|.+-.+|. .++.++.|+.|++
T Consensus 108 dltynnl~e~~lpgn-ff~m~tlralyl~dndfe~lp--~dvg~lt~lqil~lrdndll~lpk----eig~lt~lrelhi 180 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFEILP--PDVGKLTNLQILSLRDNDLLSLPK----EIGDLTRLRELHI 180 (264)
T ss_pred hccccccccccCCcc-hhHHHHHHHHHhcCCCcccCC--hhhhhhcceeEEeeccCchhhCcH----HHHHHHHHHHHhc
Confidence 777766643 3333 445666777777777776666 346788889999999999888887 7888888999999
Q ss_pred CCCCH
Q psy4162 167 VFILP 171 (210)
Q Consensus 167 ~~~~~ 171 (210)
++|..
T Consensus 181 qgnrl 185 (264)
T KOG0617|consen 181 QGNRL 185 (264)
T ss_pred cccee
Confidence 88864
No 10
>KOG1259|consensus
Probab=99.22 E-value=1.9e-12 Score=101.15 Aligned_cols=135 Identities=30% Similarity=0.286 Sum_probs=102.8
Q ss_pred cceeCCCCCccccchhhhcccCCcccccCCCC--CC---C-CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162 15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESP--PM---L-VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI 88 (210)
Q Consensus 15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~--~~---~-~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L 88 (210)
+++|+|+|.|+.++... .+-.++..+.+.. +. + +.+++|+.||||+|.++.+.+ .-..+.+++.|
T Consensus 287 telDLS~N~I~~iDESv--KL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-------wh~KLGNIKtL 357 (490)
T KOG1259|consen 287 TELDLSGNLITQIDESV--KLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-------WHLKLGNIKTL 357 (490)
T ss_pred hhccccccchhhhhhhh--hhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-------hHhhhcCEeee
Confidence 45999999999888764 2222222222222 11 2 667778888888888888774 33455778888
Q ss_pred ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcC
Q psy4162 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQ 160 (210)
Q Consensus 89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~ 160 (210)
.|+.|.|..+.. +..+.+|..|++++|+|..+..+..++.+|.|+.+.+.+||+..+++||..+++.+..
T Consensus 358 ~La~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGE 427 (490)
T KOG1259|consen 358 KLAQNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLARFGE 427 (490)
T ss_pred ehhhhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHHHHHhh
Confidence 888888877765 6678889999999999999988888999999999999999999999999888777653
No 11
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.22 E-value=3.2e-11 Score=110.98 Aligned_cols=114 Identities=18% Similarity=0.152 Sum_probs=85.2
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 129 (210)
..+.+|+.|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+.
T Consensus 209 ~~l~~L~~L~L~~n~l~~~~p------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~ 281 (968)
T PLN00113 209 GQMKSLKWIYLGYNNLSGEIP------YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-PSIF 281 (968)
T ss_pred cCcCCccEEECcCCccCCcCC------hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc-hhHh
Confidence 445555555555555554333 667888899999999998887666668888899999999998876554 6677
Q ss_pred cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162 130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE 173 (210)
Q Consensus 130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 173 (210)
.+++|+.|++++|.+.+..+ ..+..+++|+.|++.+|....
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEIP---ELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred hccCcCEEECcCCeeccCCC---hhHcCCCCCcEEECCCCccCC
Confidence 88899999999998875543 367888899999998887654
No 12
>KOG1259|consensus
Probab=99.20 E-value=2.1e-12 Score=100.95 Aligned_cols=109 Identities=29% Similarity=0.258 Sum_probs=77.2
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 129 (210)
.-.+.++.|++|+|.|..+.. +..+++|+.||||+|.++.+... ...+.+.+.|.|+.|.+.++.. ++
T Consensus 304 KL~Pkir~L~lS~N~i~~v~n--------La~L~~L~~LDLS~N~Ls~~~Gw-h~KLGNIKtL~La~N~iE~LSG---L~ 371 (490)
T KOG1259|consen 304 KLAPKLRRLILSQNRIRTVQN--------LAELPQLQLLDLSGNLLAECVGW-HLKLGNIKTLKLAQNKIETLSG---LR 371 (490)
T ss_pred hhccceeEEeccccceeeehh--------hhhcccceEeecccchhHhhhhh-HhhhcCEeeeehhhhhHhhhhh---hH
Confidence 445667777777777776642 45557777777777777776553 3446677777777777766653 56
Q ss_pred cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
.+-+|..||+++|.|..+...+ .++.+|.|+++.+.+|++.
T Consensus 372 KLYSLvnLDl~~N~Ie~ldeV~--~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 372 KLYSLVNLDLSSNQIEELDEVN--HIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhheeccccccchhhHHHhc--ccccccHHHHHhhcCCCcc
Confidence 6778889999999988765432 4788888999999888864
No 13
>KOG0618|consensus
Probab=99.15 E-value=3.6e-12 Score=111.68 Aligned_cols=108 Identities=21% Similarity=0.224 Sum_probs=93.7
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 129 (210)
.++++|+.|+|++|+++.+|. ..+..+..|++|+||+|+++.++.. ...+..|+.|...+|++..+|+ +.
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpa------s~~~kle~LeeL~LSGNkL~~Lp~t-va~~~~L~tL~ahsN~l~~fPe---~~ 449 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPA------SKLRKLEELEELNLSGNKLTTLPDT-VANLGRLHTLRAHSNQLLSFPE---LA 449 (1081)
T ss_pred ccccceeeeeecccccccCCH------HHHhchHHhHHHhcccchhhhhhHH-HHhhhhhHHHhhcCCceeechh---hh
Confidence 556679999999999999998 8899999999999999999999965 7889999999999999999985 67
Q ss_pred cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCC
Q psy4162 130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFIL 170 (210)
Q Consensus 130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~ 170 (210)
.++.|+.+|++.|.++...- ....-.++|++||++||+
T Consensus 450 ~l~qL~~lDlS~N~L~~~~l---~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLSEVTL---PEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hcCcceEEecccchhhhhhh---hhhCCCcccceeeccCCc
Confidence 89999999999999986533 122223799999999998
No 14
>KOG0472|consensus
Probab=99.12 E-value=3e-12 Score=103.30 Aligned_cols=111 Identities=20% Similarity=0.152 Sum_probs=92.6
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 129 (210)
++|.+|..|++..|+|..+|. |.++..|.++.++.|+|..++....+.+.++..|+++.|++++.| +.+.
T Consensus 203 g~l~~L~~LyL~~Nki~~lPe--------f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~P--de~c 272 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRFLPE--------FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVP--DEIC 272 (565)
T ss_pred cchhhhHHHHhhhcccccCCC--------CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCc--hHHH
Confidence 777778888888888888764 666688888888889988888887778899999999999999988 5567
Q ss_pred cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162 130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ 175 (210)
Q Consensus 130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 175 (210)
-+.+|..||+++|.++.+|. .++.+ +|+.|-+.||+...-.
T Consensus 273 lLrsL~rLDlSNN~is~Lp~----sLgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISSLPY----SLGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred HhhhhhhhcccCCccccCCc----ccccc-eeeehhhcCCchHHHH
Confidence 78889999999999999987 68888 8999999999876533
No 15
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.11 E-value=8.2e-11 Score=71.82 Aligned_cols=59 Identities=32% Similarity=0.449 Sum_probs=37.3
Q ss_pred ccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCcc
Q psy4162 55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI 119 (210)
Q Consensus 55 L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i 119 (210)
|+.|++++|+++.++. ..|..+++|+.|++++|+++.+++..|..+++|+.|++++|++
T Consensus 3 L~~L~l~~n~l~~i~~------~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPP------DSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp ESEEEETSSTESEECT------TTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcEEECCCCCCCccCH------HHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 6666666666666665 5666666666666666666666665566666666666666653
No 16
>KOG0617|consensus
Probab=99.11 E-value=6.4e-12 Score=90.89 Aligned_cols=127 Identities=19% Similarity=0.156 Sum_probs=95.5
Q ss_pred CcceeCCCCCccccchhhhcccCC-cccccCCCCCC-----CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCE
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM-----LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGW 87 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~-----~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~ 87 (210)
...|++++|+|..+|.... +++. .++.+++..+. +++++.|+.||+.+|.+.+-.- +..|..+..|+.
T Consensus 58 levln~~nnqie~lp~~is-sl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~l-----pgnff~m~tlra 131 (264)
T KOG0617|consen 58 LEVLNLSNNQIEELPTSIS-SLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSL-----PGNFFYMTTLRA 131 (264)
T ss_pred hhhhhcccchhhhcChhhh-hchhhhheecchhhhhcCccccCCCchhhhhhccccccccccC-----CcchhHHHHHHH
Confidence 3458888888888887642 2333 33344444333 4888889999999988876321 156666788888
Q ss_pred EECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149 (210)
Q Consensus 88 L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 149 (210)
|+++.|.+..+++. .+.+.+|+.|.++.|.+-+++ ..++.+..|+.|++.+|.++-+|+
T Consensus 132 lyl~dndfe~lp~d-vg~lt~lqil~lrdndll~lp--keig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 132 LYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSLP--KEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred HHhcCCCcccCChh-hhhhcceeEEeeccCchhhCc--HHHHHHHHHHHHhcccceeeecCh
Confidence 89999988888887 788888999999999888887 668888889999999999888877
No 17
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.08 E-value=1.1e-10 Score=71.19 Aligned_cols=61 Identities=28% Similarity=0.419 Sum_probs=55.3
Q ss_pred CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCC
Q psy4162 83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144 (210)
Q Consensus 83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l 144 (210)
++|+.|++++|+++.+++..|..+++|+.|++++|.++.+++ ..|.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 468999999999999998889999999999999999999886 8899999999999999875
No 18
>KOG0444|consensus
Probab=99.08 E-value=6.8e-12 Score=106.50 Aligned_cols=90 Identities=21% Similarity=0.236 Sum_probs=68.1
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 129 (210)
.+|.+|..+|+|.|.+..+| ..+..+.+|+.|+||+|+|+.+... .+.+.+|+.|++++|+++.+| ..+.
T Consensus 219 d~l~NL~dvDlS~N~Lp~vP-------ecly~l~~LrrLNLS~N~iteL~~~-~~~W~~lEtLNlSrNQLt~LP--~avc 288 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSENNLPIVP-------ECLYKLRNLRRLNLSGNKITELNMT-EGEWENLETLNLSRNQLTVLP--DAVC 288 (1255)
T ss_pred hhhhhhhhccccccCCCcch-------HHHhhhhhhheeccCcCceeeeecc-HHHHhhhhhhccccchhccch--HHHh
Confidence 66777888888888888877 6677778888899999988887664 555678888888888888887 5666
Q ss_pred cCCCcCEEeeeCCCCC--Cccc
Q psy4162 130 RVNSLRTLSLYGNPIE--KIRE 149 (210)
Q Consensus 130 ~l~~L~~L~l~~n~l~--~~~~ 149 (210)
.+++|+.|.+.+|++. ++|.
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred hhHHHHHHHhccCcccccCCcc
Confidence 6777777777776654 4444
No 19
>KOG0618|consensus
Probab=99.08 E-value=8.9e-12 Score=109.26 Aligned_cols=150 Identities=21% Similarity=0.197 Sum_probs=122.9
Q ss_pred CCcceeCCCCCccccchhhhcccCC-----cccccCCCCCC-C--CCCCCccEEEccCCccccccCCchhhhhccCCCCC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKP-----NVHRLGESPPM-L--VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDL 84 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~-----~~~~~~~~~~~-~--~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~ 84 (210)
...+||+..|+|..+++..+.-+.. +.....+...+ + ..++.|+.|++.+|++++--- ..+.++.+
T Consensus 311 sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~------p~l~~~~h 384 (1081)
T KOG0618|consen 311 SLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF------PVLVNFKH 384 (1081)
T ss_pred eeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch------hhhccccc
Confidence 4567999999999999976542222 11111222222 2 667889999999999998543 56777899
Q ss_pred CCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162 85 IGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL 164 (210)
Q Consensus 85 L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L 164 (210)
|+.|+|++|+++.++...+..+..|+.|+|++|.++.++ +.+..++.|++|...+|.+..+|. ++.++.|+.+
T Consensus 385 LKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp--~tva~~~~L~tL~ahsN~l~~fPe-----~~~l~qL~~l 457 (1081)
T KOG0618|consen 385 LKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP--DTVANLGRLHTLRAHSNQLLSFPE-----LAQLPQLKVL 457 (1081)
T ss_pred eeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh--HHHHhhhhhHHHhhcCCceeechh-----hhhcCcceEE
Confidence 999999999999999988999999999999999999998 778899999999999999999996 8899999999
Q ss_pred cCCCCCHHHHH
Q psy4162 165 DSVFILPSEKQ 175 (210)
Q Consensus 165 ~l~~~~~~~~~ 175 (210)
|++.|...+-.
T Consensus 458 DlS~N~L~~~~ 468 (1081)
T KOG0618|consen 458 DLSCNNLSEVT 468 (1081)
T ss_pred ecccchhhhhh
Confidence 99999876654
No 20
>KOG4237|consensus
Probab=99.06 E-value=2.3e-11 Score=98.00 Aligned_cols=126 Identities=25% Similarity=0.230 Sum_probs=109.6
Q ss_pred cceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC
Q psy4162 15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN 94 (210)
Q Consensus 15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~ 94 (210)
..++.+..+++.+|.. +|. ....++|..|+|+.+|+ +.|+.+.+|+.|+|++|.
T Consensus 49 ~~VdCr~~GL~eVP~~----LP~----------------~tveirLdqN~I~~iP~------~aF~~l~~LRrLdLS~N~ 102 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPAN----LPP----------------ETVEIRLDQNQISSIPP------GAFKTLHRLRRLDLSKNN 102 (498)
T ss_pred ceEEccCCCcccCccc----CCC----------------cceEEEeccCCcccCCh------hhccchhhhceecccccc
Confidence 5588888888888874 333 38999999999999998 999999999999999999
Q ss_pred CCcCCcccccCCCCccEEEccC-CccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCC
Q psy4162 95 IKNVDKNMFTNFPNLKILYLHK-NQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFIL 170 (210)
Q Consensus 95 i~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~ 170 (210)
|+.|.++.|+++.++..|-+-+ |+|+.++. +.|+++.+|+.|.+..|.+.+++. ..+..++++..|.+-.|.
T Consensus 103 Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k-~~F~gL~slqrLllNan~i~Cir~---~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 103 ISFIAPDAFKGLASLLSLVLYGNNKITDLPK-GAFGGLSSLQRLLLNANHINCIRQ---DALRDLPSLSLLSLYDNK 175 (498)
T ss_pred hhhcChHhhhhhHhhhHHHhhcCCchhhhhh-hHhhhHHHHHHHhcChhhhcchhH---HHHHHhhhcchhcccchh
Confidence 9999999999999877765555 99999997 999999999999999999999877 689999998877775554
No 21
>KOG0472|consensus
Probab=99.01 E-value=6e-11 Score=95.93 Aligned_cols=148 Identities=20% Similarity=0.151 Sum_probs=117.2
Q ss_pred CCcceeCCCCCccccchhhhc--cc-CCcccccCCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQ--KL-KPNVHRLGESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIG 86 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~--~l-~~~~~~~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~ 86 (210)
....++++.|++..+|..... .+ +..+...+..... .+.++.|..|++++|.+.++| ..++.+..|+
T Consensus 389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP-------~e~~~lv~Lq 461 (565)
T KOG0472|consen 389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLP-------EEMGSLVRLQ 461 (565)
T ss_pred ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcc-------hhhhhhhhhh
Confidence 345699999999988874321 00 0111222333333 277888999999999999998 6677778899
Q ss_pred EEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccC
Q psy4162 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDS 166 (210)
Q Consensus 87 ~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l 166 (210)
.++++.|++..+|.. ...+..++.+-.+.|++...++ ..+.++.+|..||+..|.+..+|+ .++.+++|++|++
T Consensus 462 ~LnlS~NrFr~lP~~-~y~lq~lEtllas~nqi~~vd~-~~l~nm~nL~tLDL~nNdlq~IPp----~LgnmtnL~hLeL 535 (565)
T KOG0472|consen 462 TLNLSFNRFRMLPEC-LYELQTLETLLASNNQIGSVDP-SGLKNMRNLTTLDLQNNDLQQIPP----ILGNMTNLRHLEL 535 (565)
T ss_pred eecccccccccchHH-HhhHHHHHHHHhccccccccCh-HHhhhhhhcceeccCCCchhhCCh----hhccccceeEEEe
Confidence 999999999888764 5566778888888899999986 778899999999999999999998 8999999999999
Q ss_pred CCCCHHH
Q psy4162 167 VFILPSE 173 (210)
Q Consensus 167 ~~~~~~~ 173 (210)
.+|++..
T Consensus 536 ~gNpfr~ 542 (565)
T KOG0472|consen 536 DGNPFRQ 542 (565)
T ss_pred cCCccCC
Confidence 9999864
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.96 E-value=1.1e-09 Score=97.25 Aligned_cols=149 Identities=19% Similarity=0.116 Sum_probs=90.6
Q ss_pred CCCCcceeCCCCCccccchhhh--cccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhh------hhc---c
Q psy4162 11 PEFKIPLDLSFQQIQSLDKVAV--QKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLV------HRT---I 79 (210)
Q Consensus 11 ~~~~~~L~ls~n~l~~l~~~~~--~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~------~~~---~ 79 (210)
|.....|++++|+|+.++.... ..+.- -...+..++ ....+|+.|++++|+|+.+|.+..-. ... +
T Consensus 301 p~~L~~LdLS~N~L~~Lp~lp~~L~~L~L--s~N~L~~LP-~lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~L 377 (788)
T PRK15387 301 PPGLQELSVSDNQLASLPALPSELCKLWA--YNNQLTSLP-TLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSL 377 (788)
T ss_pred ccccceeECCCCccccCCCCccccccccc--ccCcccccc-ccccccceEecCCCccCCCCCCCcccceehhhccccccC
Confidence 4456778888888888765322 11100 000111111 11135777777777777765421100 000 0
Q ss_pred C-CCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhC
Q psy4162 80 L-DPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMI 158 (210)
Q Consensus 80 ~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l 158 (210)
. .+..|+.|++++|+++.++.. ..+|+.|++++|+++.++. . ..+|..|++++|.++.+|. .+..+
T Consensus 378 P~l~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~--l---~~~L~~L~Ls~NqLt~LP~----sl~~L 444 (788)
T PRK15387 378 PALPSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPM--L---PSGLLSLSVYRNQLTRLPE----SLIHL 444 (788)
T ss_pred cccccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCc--c---hhhhhhhhhccCcccccCh----HHhhc
Confidence 0 113577777777777766542 3567778888888877663 1 2457788888888888886 68889
Q ss_pred cCcccccCCCCCHHHHH
Q psy4162 159 PQLVTLDSVFILPSEKQ 175 (210)
Q Consensus 159 ~~L~~L~l~~~~~~~~~ 175 (210)
++|+.|++++|+..+..
T Consensus 445 ~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 445 SSETTVNLEGNPLSERT 461 (788)
T ss_pred cCCCeEECCCCCCCchH
Confidence 99999999999887654
No 23
>KOG0532|consensus
Probab=98.86 E-value=2.8e-10 Score=95.53 Aligned_cols=124 Identities=22% Similarity=0.201 Sum_probs=101.9
Q ss_pred eeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCC
Q psy4162 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIK 96 (210)
Q Consensus 17 L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 96 (210)
+|++.|+++.++.-.+. -. |+.|-+++|+++.+| ..++.+++|..|+.+.|.+.
T Consensus 126 l~ls~NqlS~lp~~lC~--lp-----------------Lkvli~sNNkl~~lp-------~~ig~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 126 LDLSSNQLSHLPDGLCD--LP-----------------LKVLIVSNNKLTSLP-------EEIGLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred hhhccchhhcCChhhhc--Cc-----------------ceeEEEecCccccCC-------cccccchhHHHhhhhhhhhh
Confidence 66777777777665543 44 889999999999988 56667788899999999999
Q ss_pred cCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHH
Q psy4162 97 NVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEK 174 (210)
Q Consensus 97 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 174 (210)
++++. ...+.+|+.|.++.|.+..++ ..+..|+ |..||++.|++..+|. .+.+|++|++|-+.+|+...-
T Consensus 180 slpsq-l~~l~slr~l~vrRn~l~~lp--~El~~Lp-Li~lDfScNkis~iPv----~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 180 SLPSQ-LGYLTSLRDLNVRRNHLEDLP--EELCSLP-LIRLDFSCNKISYLPV----DFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hchHH-hhhHHHHHHHHHhhhhhhhCC--HHHhCCc-eeeeecccCceeecch----hhhhhhhheeeeeccCCCCCC
Confidence 98887 778889999999999999988 4455655 8889999999999997 799999999999999987543
No 24
>PLN03150 hypothetical protein; Provisional
Probab=98.80 E-value=1.7e-08 Score=88.70 Aligned_cols=106 Identities=19% Similarity=0.148 Sum_probs=83.6
Q ss_pred CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS 133 (210)
Q Consensus 54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~ 133 (210)
.++.|+|++|.+.+..+ ..+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|.+.+..+ ..++.+++
T Consensus 419 ~v~~L~L~~n~L~g~ip------~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~ 491 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIP------NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTS 491 (623)
T ss_pred EEEEEECCCCCccccCC------HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCC
Confidence 37889999999987665 778889999999999999987666558889999999999999987665 77889999
Q ss_pred cCEEeeeCCCCCC-ccchHHHHHHh-CcCcccccCCCCC
Q psy4162 134 LRTLSLYGNPIEK-IREYRAVVSTM-IPQLVTLDSVFIL 170 (210)
Q Consensus 134 L~~L~l~~n~l~~-~~~~~~~~l~~-l~~L~~L~l~~~~ 170 (210)
|+.|++++|.+++ +|. .+.. ..++..+++.+|+
T Consensus 492 L~~L~Ls~N~l~g~iP~----~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 492 LRILNLNGNSLSGRVPA----ALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCEEECcCCcccccCCh----HHhhccccCceEEecCCc
Confidence 9999999999985 454 3443 2345556665553
No 25
>KOG1859|consensus
Probab=98.79 E-value=3.6e-10 Score=97.38 Aligned_cols=124 Identities=22% Similarity=0.225 Sum_probs=98.1
Q ss_pred eeCCCCCccccchhh-hcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCC
Q psy4162 17 LDLSFQQIQSLDKVA-VQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNI 95 (210)
Q Consensus 17 L~ls~n~l~~l~~~~-~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i 95 (210)
.++++|.+..++... +. +. ++.|+|++|+++.+. .+..+++|+.|||++|.+
T Consensus 169 a~fsyN~L~~mD~SLqll--~a-----------------le~LnLshNk~~~v~--------~Lr~l~~LkhLDlsyN~L 221 (1096)
T KOG1859|consen 169 ASFSYNRLVLMDESLQLL--PA-----------------LESLNLSHNKFTKVD--------NLRRLPKLKHLDLSYNCL 221 (1096)
T ss_pred hhcchhhHHhHHHHHHHH--HH-----------------hhhhccchhhhhhhH--------HHHhcccccccccccchh
Confidence 667777777776643 22 55 999999999999984 567789999999999999
Q ss_pred CcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162 96 KNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE 173 (210)
Q Consensus 96 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 173 (210)
..++.-....+ .|..|.+++|.++++.. +.++.+|..||++.|-+.+.... ..++.+..|..|.+.||++..
T Consensus 222 ~~vp~l~~~gc-~L~~L~lrnN~l~tL~g---ie~LksL~~LDlsyNll~~hseL--~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 222 RHVPQLSMVGC-KLQLLNLRNNALTTLRG---IENLKSLYGLDLSYNLLSEHSEL--EPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ccccccchhhh-hheeeeecccHHHhhhh---HHhhhhhhccchhHhhhhcchhh--hHHHHHHHHHHHhhcCCcccc
Confidence 99876322233 49999999999999875 56788999999999999876542 357888889999999999754
No 26
>KOG2123|consensus
Probab=98.77 E-value=6e-10 Score=86.34 Aligned_cols=116 Identities=29% Similarity=0.315 Sum_probs=100.1
Q ss_pred CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccC
Q psy4162 52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131 (210)
Q Consensus 52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l 131 (210)
+.+.+.|+.-++.++++. ....|+.|+.|.||-|+|+++.+ +..|..|+.|+|+.|.|.++.++.-+.++
T Consensus 18 l~~vkKLNcwg~~L~DIs--------ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--------ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HHHhhhhcccCCCccHHH--------HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence 444788888888888874 45677899999999999999988 89999999999999999999887778899
Q ss_pred CCcCEEeeeCCCCCCc--cchHHHHHHhCcCcccccCCCCCHHHHHHH
Q psy4162 132 NSLRTLSLYGNPIEKI--REYRAVVSTMIPQLVTLDSVFILPSEKQET 177 (210)
Q Consensus 132 ~~L~~L~l~~n~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 177 (210)
|+|+.|+|..||..+. +.||..++..+|+|+.||-......|...+
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~A 135 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEA 135 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHH
Confidence 9999999999998764 668999999999999999888776665543
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.75 E-value=2.5e-08 Score=88.80 Aligned_cols=114 Identities=16% Similarity=0.144 Sum_probs=74.4
Q ss_pred cceeCCCCCccccchhhhcccCCcccccCCCCCC-C-CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162 15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPM-L-VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSF 92 (210)
Q Consensus 15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~-~-~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~ 92 (210)
..|+++.++|+.+|......+.. +.+....+. . ..+++|+.|++++|+|+.+|.+ +++|+.|++++
T Consensus 204 ~~LdLs~~~LtsLP~~l~~~L~~--L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsLP~l----------p~sL~~L~Ls~ 271 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLPAHITT--LVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVL----------PPGLLELSIFS 271 (788)
T ss_pred cEEEcCCCCCCcCCcchhcCCCE--EEccCCcCCCCCCCCCCCcEEEecCCccCcccCc----------ccccceeeccC
Confidence 45889999998888743221111 111111222 1 3456788888888888877641 25777888888
Q ss_pred CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162 93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149 (210)
Q Consensus 93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 149 (210)
|.++.++.. ...|+.|++++|+++.++. .+++|+.|++++|.+..++.
T Consensus 272 N~L~~Lp~l----p~~L~~L~Ls~N~Lt~LP~-----~p~~L~~LdLS~N~L~~Lp~ 319 (788)
T PRK15387 272 NPLTHLPAL----PSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASLPA 319 (788)
T ss_pred Cchhhhhhc----hhhcCEEECcCCccccccc-----cccccceeECCCCccccCCC
Confidence 887776542 3467778888888887763 24678888888888887654
No 28
>PLN03150 hypothetical protein; Provisional
Probab=98.75 E-value=3.8e-08 Score=86.63 Aligned_cols=107 Identities=20% Similarity=0.187 Sum_probs=82.7
Q ss_pred ceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCC
Q psy4162 16 PLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNI 95 (210)
Q Consensus 16 ~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i 95 (210)
.|++++|.++...+..+..+++ |+.|+|++|.+.+..+ ..+..+++|+.|+|++|++
T Consensus 422 ~L~L~~n~L~g~ip~~i~~L~~-----------------L~~L~Ls~N~l~g~iP------~~~~~l~~L~~LdLs~N~l 478 (623)
T PLN03150 422 GLGLDNQGLRGFIPNDISKLRH-----------------LQSINLSGNSIRGNIP------PSLGSITSLEVLDLSYNSF 478 (623)
T ss_pred EEECCCCCccccCCHHHhCCCC-----------------CCEEECCCCcccCcCC------hHHhCCCCCCEEECCCCCC
Confidence 3666666665544444444444 9999999999986554 7789999999999999999
Q ss_pred CcCCcccccCCCCccEEEccCCccCcccccccccc-CCCcCEEeeeCCCCCC
Q psy4162 96 KNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR-VNSLRTLSLYGNPIEK 146 (210)
Q Consensus 96 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~-l~~L~~L~l~~n~l~~ 146 (210)
++..+..++.+++|+.|++++|.++...+ ..+.. ...+..+++.+|+..+
T Consensus 479 sg~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 479 NGSIPESLGQLTSLRILNLNGNSLSGRVP-AALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCCCchHHhcCCCCCEEECcCCcccccCC-hHHhhccccCceEEecCCcccc
Confidence 98777778999999999999999986654 44544 3467788999987543
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.74 E-value=2.6e-08 Score=88.79 Aligned_cols=76 Identities=22% Similarity=0.249 Sum_probs=34.6
Q ss_pred CCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccc
Q psy4162 84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVT 163 (210)
Q Consensus 84 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~ 163 (210)
.|+.|++++|+++.++.. + ..+|+.|++++|.++.++. .+ .++|+.|++++|.+..+|. .+ .++|+.
T Consensus 263 ~L~~L~Ls~N~L~~LP~~-l--~~sL~~L~Ls~N~Lt~LP~--~l--p~sL~~L~Ls~N~Lt~LP~----~l--~~sL~~ 329 (754)
T PRK15370 263 ALQSLDLFHNKISCLPEN-L--PEELRYLSVYDNSIRTLPA--HL--PSGITHLNVQSNSLTALPE----TL--PPGLKT 329 (754)
T ss_pred CCCEEECcCCccCccccc-c--CCCCcEEECCCCccccCcc--cc--hhhHHHHHhcCCccccCCc----cc--ccccee
Confidence 344455555544444332 1 1244555555555444432 11 1234445555555554443 11 245666
Q ss_pred ccCCCCCHH
Q psy4162 164 LDSVFILPS 172 (210)
Q Consensus 164 L~l~~~~~~ 172 (210)
|+++.|...
T Consensus 330 L~Ls~N~Lt 338 (754)
T PRK15370 330 LEAGENALT 338 (754)
T ss_pred ccccCCccc
Confidence 666666543
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.74 E-value=1.9e-08 Score=89.56 Aligned_cols=107 Identities=17% Similarity=0.188 Sum_probs=71.1
Q ss_pred CCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCC
Q psy4162 53 YDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVN 132 (210)
Q Consensus 53 ~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~ 132 (210)
++|+.|++++|.++.++. .+ .++|+.|++++|+++.++.. + .++|+.|++++|.++.+++ . +. .
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~-------~l--~~sL~~L~Ls~N~L~~LP~~-l--p~~L~~LdLs~N~Lt~LP~-~-l~--~ 388 (754)
T PRK15370 325 PGLKTLEAGENALTSLPA-------SL--PPELQVLDVSKNQITVLPET-L--PPTITTLDVSRNALTNLPE-N-LP--A 388 (754)
T ss_pred ccceeccccCCccccCCh-------hh--cCcccEEECCCCCCCcCChh-h--cCCcCEEECCCCcCCCCCH-h-HH--H
Confidence 456666666666666552 22 25788888888887776653 2 3578888888888877763 2 22 3
Q ss_pred CcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162 133 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ 175 (210)
Q Consensus 133 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 175 (210)
.|+.|++++|.+..+|..-......++.+..|++.+|++.+..
T Consensus 389 sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~t 431 (754)
T PRK15370 389 ALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERT 431 (754)
T ss_pred HHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHH
Confidence 5778888888888776522223444577888999999876543
No 31
>KOG1859|consensus
Probab=98.60 E-value=1.9e-09 Score=93.04 Aligned_cols=112 Identities=26% Similarity=0.266 Sum_probs=95.3
Q ss_pred ceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCC
Q psy4162 16 PLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNI 95 (210)
Q Consensus 16 ~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i 95 (210)
.|++++|++++++-+ ..++. |+.|||++|.+..++.++ ..++ .|+.|++++|.+
T Consensus 191 ~LnLshNk~~~v~~L--r~l~~-----------------LkhLDlsyN~L~~vp~l~------~~gc-~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 191 SLNLSHNKFTKVDNL--RRLPK-----------------LKHLDLSYNCLRHVPQLS------MVGC-KLQLLNLRNNAL 244 (1096)
T ss_pred hhccchhhhhhhHHH--Hhccc-----------------ccccccccchhccccccc------hhhh-hheeeeecccHH
Confidence 499999999999844 34577 999999999999998743 2233 499999999999
Q ss_pred CcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHH
Q psy4162 96 KNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVS 155 (210)
Q Consensus 96 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 155 (210)
+++.. +..+.+|..|+++.|-+.+..++..+..+..|+.|+|.|||+.+-|.+|....
T Consensus 245 ~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaata 302 (1096)
T KOG1859|consen 245 TTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATA 302 (1096)
T ss_pred Hhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHH
Confidence 99887 78899999999999999888776677888899999999999999999886544
No 32
>KOG0532|consensus
Probab=98.60 E-value=1.9e-09 Score=90.69 Aligned_cols=144 Identities=23% Similarity=0.177 Sum_probs=113.3
Q ss_pred CCcceeCCCCCccccchhh--hcccCC-cccccCCCCCC-C-CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCE
Q psy4162 13 FKIPLDLSFQQIQSLDKVA--VQKLKP-NVHRLGESPPM-L-VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGW 87 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~--~~~l~~-~~~~~~~~~~~-~-~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~ 87 (210)
.++.+|++.|++..++... |..+.. ......+...+ . +.+..|+.+||+.|+++.+| ..+..++ |+.
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp-------~~lC~lp-Lkv 147 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLP-------DGLCDLP-LKV 147 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCC-------hhhhcCc-cee
Confidence 3566999999999988753 222222 11122444444 3 78888999999999999988 4444553 889
Q ss_pred EECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCC
Q psy4162 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV 167 (210)
Q Consensus 88 L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~ 167 (210)
|.+++|+++.++.. .+....|..|+.+.|.+..++ ..++++.+|+.|.+..|.+..+|. .+..++ |..||++
T Consensus 148 li~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~slp--sql~~l~slr~l~vrRn~l~~lp~----El~~Lp-Li~lDfS 219 (722)
T KOG0532|consen 148 LIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQSLP--SQLGYLTSLRDLNVRRNHLEDLPE----ELCSLP-LIRLDFS 219 (722)
T ss_pred EEEecCccccCCcc-cccchhHHHhhhhhhhhhhch--HHhhhHHHHHHHHHhhhhhhhCCH----HHhCCc-eeeeecc
Confidence 99999999999987 667889999999999999998 678999999999999999999987 566666 8899999
Q ss_pred CCCHH
Q psy4162 168 FILPS 172 (210)
Q Consensus 168 ~~~~~ 172 (210)
.|++.
T Consensus 220 cNkis 224 (722)
T KOG0532|consen 220 CNKIS 224 (722)
T ss_pred cCcee
Confidence 99864
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.59 E-value=9.2e-08 Score=77.12 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=16.3
Q ss_pred CCCCEEECcCCCCCcCC----cccccCCCCccEEEccCCccC
Q psy4162 83 DLIGWIDLSFNNIKNVD----KNMFTNFPNLKILYLHKNQIE 120 (210)
Q Consensus 83 ~~L~~L~Ls~n~i~~~~----~~~~~~~~~L~~L~l~~n~i~ 120 (210)
++|+.|++++|.++... ...+..+.+|+.|++++|.++
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 44555555555544211 111233344555555555444
No 34
>KOG2739|consensus
Probab=98.57 E-value=5.1e-08 Score=74.87 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=89.1
Q ss_pred CCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC--CCCcCCcccccCCCCccEEEccCCccCcccccccc
Q psy4162 51 GRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN--NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL 128 (210)
Q Consensus 51 ~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 128 (210)
.+..|+.+.+.+..++.+.. |..+++|++|.++.| ++..-..-....+++|+++++++|+++.+..+..+
T Consensus 41 ~~~~le~ls~~n~gltt~~~--------~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN--------FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccchhhhhhhccceeeccc--------CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 34447888888888887754 566789999999999 55443222234569999999999999976555567
Q ss_pred ccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCC
Q psy4162 129 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFIL 170 (210)
Q Consensus 129 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~ 170 (210)
..+.+|..|++..|......+||..++..+++|++||...+.
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 788899999999999999999999999999999999886554
No 35
>KOG2982|consensus
Probab=98.57 E-value=2e-08 Score=78.74 Aligned_cols=80 Identities=24% Similarity=0.314 Sum_probs=66.5
Q ss_pred ccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCc---cchHHHHHHhCcCcccccCCCCCHHHHHHHHH
Q psy4162 103 FTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI---REYRAVVSTMIPQLVTLDSVFILPSEKQETNA 179 (210)
Q Consensus 103 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 179 (210)
+..++.+..|+|+.|+|.+|..++.+.+++.|..|.+++||+.+- ...|.-.++++++++.|+.+.+...++++.+.
T Consensus 220 se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dSEr 299 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDSER 299 (418)
T ss_pred CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccchhhhhhhHH
Confidence 344677778999999999998889999999999999999998742 11233458999999999999999999998887
Q ss_pred HHH
Q psy4162 180 LNA 182 (210)
Q Consensus 180 ~~~ 182 (210)
++.
T Consensus 300 ~fV 302 (418)
T KOG2982|consen 300 RFV 302 (418)
T ss_pred HHH
Confidence 776
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.49 E-value=3.5e-07 Score=73.72 Aligned_cols=120 Identities=24% Similarity=0.197 Sum_probs=57.7
Q ss_pred CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCc----ccccCCCCccEEEccCCccCccccccc
Q psy4162 52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK----NMFTNFPNLKILYLHKNQIEEYLSVFV 127 (210)
Q Consensus 52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~~~~ 127 (210)
+..|+.|++++|.++.. .+..+. ..+..++.|+.|++++|.++.... ..+..+++|+.|++++|.++.... ..
T Consensus 164 ~~~L~~L~l~~n~l~~~-~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~-~~ 240 (319)
T cd00116 164 NRDLKELNLANNGIGDA-GIRALA-EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA-AA 240 (319)
T ss_pred CCCcCEEECcCCCCchH-HHHHHH-HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH-HH
Confidence 33466666666665531 111110 223334566666666666543321 123345566666666666654221 11
Q ss_pred c-c----cCCCcCEEeeeCCCCCCccchH-HHHHHhCcCcccccCCCCCHHHH
Q psy4162 128 L-R----RVNSLRTLSLYGNPIEKIREYR-AVVSTMIPQLVTLDSVFILPSEK 174 (210)
Q Consensus 128 ~-~----~l~~L~~L~l~~n~l~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~ 174 (210)
+ . ..+.|+.|++++|.++...... ...+..+++|+.+++++|.+.+.
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 1 1 1356666666666665321100 01344455666666666666544
No 37
>KOG3207|consensus
Probab=98.46 E-value=4.5e-08 Score=80.11 Aligned_cols=168 Identities=21% Similarity=0.173 Sum_probs=118.9
Q ss_pred CcceeCCCCCccccchhh-hcccCC-cccccCCC-CCC----C-CCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162 14 KIPLDLSFQQIQSLDKVA-VQKLKP-NVHRLGES-PPM----L-VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI 85 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~-~~~l~~-~~~~~~~~-~~~----~-~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L 85 (210)
.++|.++.++++.-+... ...+|+ .++.+... ... + .-+..|+.|||++|++-.++.+ ...+.++.|
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-----~~~~~l~~L 273 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-----YKVGTLPGL 273 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-----cccccccch
Confidence 356888888887322221 122344 11222222 111 1 5677799999999998887742 345667888
Q ss_pred CEEECcCCCCCcCCcccc------cCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccch-HHHHHHhC
Q psy4162 86 GWIDLSFNNIKNVDKNMF------TNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY-RAVVSTMI 158 (210)
Q Consensus 86 ~~L~Ls~n~i~~~~~~~~------~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~l 158 (210)
..|+++.+.+.++..... ...++|+.|++..|+|..+..+..+..+++|..|.+..|.+....+. +..+++++
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~ 353 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARI 353 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccccceeEEeeeeh
Confidence 889999998887643212 34678999999999999888777888888999999999998754332 22468899
Q ss_pred cCcccccCCCCCHHHHHHHHHHHHhhhh
Q psy4162 159 PQLVTLDSVFILPSEKQETNALNAEIRS 186 (210)
Q Consensus 159 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 186 (210)
++|..|+-..+...+|..++..+..|.+
T Consensus 354 ~~l~~LN~~di~p~eRR~AEl~~~~~~~ 381 (505)
T KOG3207|consen 354 SQLVKLNDVDISPNERRDAELYYLSKIF 381 (505)
T ss_pred hhhhhhcccccChHHhhhhhhhHHhhhh
Confidence 9999999999999999999888776643
No 38
>KOG0531|consensus
Probab=98.45 E-value=1.1e-07 Score=80.00 Aligned_cols=118 Identities=25% Similarity=0.198 Sum_probs=92.9
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 129 (210)
..+.++..|++.+|.|..+.. .+..+++|+.|++++|+|+.+.+ +..+..|+.|++.+|.|+.+.. +.
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~-------~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~---~~ 159 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIEN-------LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG---LE 159 (414)
T ss_pred ccccceeeeeccccchhhccc-------chhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccC---Cc
Confidence 566779999999999998874 25566889999999999998887 6778889999999999988864 55
Q ss_pred cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHHHHHHHHH
Q psy4162 130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNALNA 182 (210)
Q Consensus 130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 182 (210)
.++.|+.+++++|.+..+... . ...+.+++.+++.+|.+.+.........
T Consensus 160 ~l~~L~~l~l~~n~i~~ie~~--~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~ 209 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIVDIEND--E-LSELISLEELDLGGNSIREIEGLDLLKK 209 (414)
T ss_pred cchhhhcccCCcchhhhhhhh--h-hhhccchHHHhccCCchhcccchHHHHH
Confidence 688899999999999888651 1 4777888888888888776665544443
No 39
>KOG1644|consensus
Probab=98.44 E-value=2.4e-07 Score=68.82 Aligned_cols=109 Identities=26% Similarity=0.295 Sum_probs=88.8
Q ss_pred ccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCc
Q psy4162 55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134 (210)
Q Consensus 55 L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L 134 (210)
-+.+++.+.++..+..++.. +.+...+|+++|.+..++. |+.++.|.+|.++.|+|+.+.+ .--.-++.|
T Consensus 21 e~e~~LR~lkip~ienlg~~-------~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l 90 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGAT-------LDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDP-DLDTFLPNL 90 (233)
T ss_pred ccccccccccccchhhcccc-------ccccceecccccchhhccc--CCCccccceEEecCCcceeecc-chhhhcccc
Confidence 56677888787776653321 2578899999999988877 8999999999999999999975 434457889
Q ss_pred CEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162 135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ 175 (210)
Q Consensus 135 ~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 175 (210)
..|.+.+|.+..+.+. .-++.+|+|+.|.+-+|++.++.
T Consensus 91 ~~L~LtnNsi~~l~dl--~pLa~~p~L~~Ltll~Npv~~k~ 129 (233)
T KOG1644|consen 91 KTLILTNNSIQELGDL--DPLASCPKLEYLTLLGNPVEHKK 129 (233)
T ss_pred ceEEecCcchhhhhhc--chhccCCccceeeecCCchhccc
Confidence 9999999999977553 34899999999999999998776
No 40
>KOG4579|consensus
Probab=98.43 E-value=1.4e-08 Score=70.96 Aligned_cols=109 Identities=26% Similarity=0.212 Sum_probs=78.4
Q ss_pred ccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCc
Q psy4162 55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134 (210)
Q Consensus 55 L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L 134 (210)
+..++|+.+++-.++.. ...+....+|+.++|++|.+..+++..-...+.++.+++.+|.+..+|. + +..++.|
T Consensus 29 ~h~ldLssc~lm~i~da----vy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe-E-~Aam~aL 102 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADA----VYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE-E-LAAMPAL 102 (177)
T ss_pred hhhcccccchhhHHHHH----HHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH-H-HhhhHHh
Confidence 56677777776655421 1444555677788888888888887755556678888888888888873 3 7888888
Q ss_pred CEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162 135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE 173 (210)
Q Consensus 135 ~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 173 (210)
+.++++.|++...+. ++..+.++..||..++...+
T Consensus 103 r~lNl~~N~l~~~p~----vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 103 RSLNLRFNPLNAEPR----VIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred hhcccccCccccchH----HHHHHHhHHHhcCCCCcccc
Confidence 888888888888776 56667777777777776543
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.42 E-value=9e-08 Score=79.78 Aligned_cols=107 Identities=23% Similarity=0.200 Sum_probs=54.6
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCC------------
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKN------------ 117 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n------------ 117 (210)
..+++|+.|++++|++..++. ....++.|..|++++|++..++.. ......|..+.+++|
T Consensus 160 ~~l~~L~~L~l~~N~l~~l~~-------~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~ 231 (394)
T COG4886 160 RNLPNLKNLDLSFNDLSDLPK-------LLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNL 231 (394)
T ss_pred hccccccccccCCchhhhhhh-------hhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhc
Confidence 344456666666666666553 111335555555666655555542 122333444444444
Q ss_pred -----------ccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCH
Q psy4162 118 -----------QIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILP 171 (210)
Q Consensus 118 -----------~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~ 171 (210)
++...+ ..++.++.++.|++++|.++.++. ++.+.+++.|+++++..
T Consensus 232 ~~l~~l~l~~n~~~~~~--~~~~~l~~l~~L~~s~n~i~~i~~-----~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 232 KNLSGLELSNNKLEDLP--ESIGNLSNLETLDLSNNQISSISS-----LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccccccccCCceeeecc--chhccccccceecccccccccccc-----ccccCccCEEeccCccc
Confidence 333322 223445556666666666665543 55555666666666554
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.35 E-value=1.7e-07 Score=78.14 Aligned_cols=80 Identities=29% Similarity=0.389 Sum_probs=52.2
Q ss_pred CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS 133 (210)
Q Consensus 54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~ 133 (210)
+|+.|++++|.+..++ ..+..++.|+.|++++|++..++.. ......|..|++++|++..++. ..+....
T Consensus 141 nL~~L~l~~N~i~~l~-------~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~--~~~~~~~ 210 (394)
T COG4886 141 NLKELDLSDNKIESLP-------SPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKISDLPP--EIELLSA 210 (394)
T ss_pred hcccccccccchhhhh-------hhhhccccccccccCCchhhhhhhh-hhhhhhhhheeccCCccccCch--hhhhhhh
Confidence 4777777777777775 3455667777777777777777763 2256777777777777777763 2223333
Q ss_pred cCEEeeeCCC
Q psy4162 134 LRTLSLYGNP 143 (210)
Q Consensus 134 L~~L~l~~n~ 143 (210)
|..+.+++|+
T Consensus 211 L~~l~~~~N~ 220 (394)
T COG4886 211 LEELDLSNNS 220 (394)
T ss_pred hhhhhhcCCc
Confidence 5555555553
No 43
>KOG4579|consensus
Probab=98.33 E-value=4.6e-08 Score=68.43 Aligned_cols=108 Identities=21% Similarity=0.166 Sum_probs=88.3
Q ss_pred ceeCCCCCccccchhhh--cccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162 16 PLDLSFQQIQSLDKVAV--QKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN 93 (210)
Q Consensus 16 ~L~ls~n~l~~l~~~~~--~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n 93 (210)
.+|++.+.|-.++.... ..... |..+++++|.+..+|. ..-...+.++.+++++|
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~e-----------------l~~i~ls~N~fk~fp~------kft~kf~t~t~lNl~~n 87 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYE-----------------LTKISLSDNGFKKFPK------KFTIKFPTATTLNLANN 87 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCce-----------------EEEEecccchhhhCCH------HHhhccchhhhhhcchh
Confidence 37788888877776542 22233 8889999999999985 44444468999999999
Q ss_pred CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162 94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149 (210)
Q Consensus 94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 149 (210)
+|+.++.. +..++.|+.++++.|.+...+ ..+..+.++-.|+..+|.+..++.
T Consensus 88 eisdvPeE-~Aam~aLr~lNl~~N~l~~~p--~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 88 EISDVPEE-LAAMPALRSLNLRFNPLNAEP--RVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred hhhhchHH-HhhhHHhhhcccccCccccch--HHHHHHHhHHHhcCCCCccccCcH
Confidence 99999988 999999999999999999987 456668999999999999988875
No 44
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.33 E-value=3e-06 Score=79.74 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=74.6
Q ss_pred CCCCCccEEEccCC-ccccccCCchhhhhccCCCCCCCEEECcCCC-CCcCCcccccCCCCccEEEccCCccCccccccc
Q psy4162 50 VGRYDTRSLWLSHN-KISLVYGLDSLVHRTILDPDLIGWIDLSFNN-IKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFV 127 (210)
Q Consensus 50 ~~l~~L~~L~ls~n-~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 127 (210)
+.+++|+.|++++| .+..+|. .. .+++|+.|++++|. +..++. ...+|+.|++++|.++.+| ..
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP~-------~~-~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~n~i~~iP--~s 864 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLPT-------GI-NLESLESLDLSGCSRLRTFPD----ISTNISDLNLSRTGIEEVP--WW 864 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeCC-------CC-CccccCEEECCCCCccccccc----cccccCEeECCCCCCccCh--HH
Confidence 56677899998875 4666653 22 56788889988874 444433 1357888999999998887 55
Q ss_pred cccCCCcCEEeeeC-CCCCCccchHHHHHHhCcCcccccCCCCC
Q psy4162 128 LRRVNSLRTLSLYG-NPIEKIREYRAVVSTMIPQLVTLDSVFIL 170 (210)
Q Consensus 128 ~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~l~~L~~L~l~~~~ 170 (210)
+..+++|+.|++++ +.+..++. .+..+++|+.+++.+|.
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~----~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSL----NISKLKHLETVDFSDCG 904 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCc----ccccccCCCeeecCCCc
Confidence 78889999999988 45667665 46677777777777775
No 45
>KOG3207|consensus
Probab=98.33 E-value=7.7e-08 Score=78.80 Aligned_cols=160 Identities=18% Similarity=0.123 Sum_probs=87.7
Q ss_pred CcceeCCCCCccccchhh--hcccCCcccccCCCCC----C--C---CCCCCccEEEccCCccccccCCchhhhhccCCC
Q psy4162 14 KIPLDLSFQQIQSLDKVA--VQKLKPNVHRLGESPP----M--L---VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDP 82 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~--~~~l~~~~~~~~~~~~----~--~---~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l 82 (210)
...||+|.|-+....+.. ...|++ ...+++... . + ..+.+|+.|.++.+.++.-. . ......+
T Consensus 148 v~~LdLS~NL~~nw~~v~~i~eqLp~-Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~-V----~~~~~~f 221 (505)
T KOG3207|consen 148 VRDLDLSRNLFHNWFPVLKIAEQLPS-LENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKD-V----QWILLTF 221 (505)
T ss_pred ceeecchhhhHHhHHHHHHHHHhccc-chhcccccccccCCccccchhhhhhhheEEeccCCCCHHH-H----HHHHHhC
Confidence 345999999888876653 122333 111111111 1 1 44566777777777766311 1 1233344
Q ss_pred CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccch---HHHHHHhCc
Q psy4162 83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY---RAVVSTMIP 159 (210)
Q Consensus 83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~l~ 159 (210)
|+|..|+|..|....+......-++.|+.|+|++|.+..++.....+.++.|..|+++.+.+..+..+ -.......+
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 66666666666432222222344566777777777777766555566777777777777776654211 001134566
Q ss_pred CcccccCCCCCHHHHHHHHH
Q psy4162 160 QLVTLDSVFILPSEKQETNA 179 (210)
Q Consensus 160 ~L~~L~l~~~~~~~~~~~~~ 179 (210)
+|+.|++..|++.++...+.
T Consensus 302 kL~~L~i~~N~I~~w~sl~~ 321 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWRSLNH 321 (505)
T ss_pred cceeeecccCccccccccch
Confidence 77777777777755554433
No 46
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.32 E-value=2.6e-06 Score=80.15 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=41.9
Q ss_pred CCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC-CCcCCcccccCCCCccEEEccCCc-cCcccccccccc
Q psy4162 53 YDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN-IKNVDKNMFTNFPNLKILYLHKNQ-IEEYLSVFVLRR 130 (210)
Q Consensus 53 ~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~ 130 (210)
.+|+.|++++|.+..++ ..+..+++|+.++++++. +..++. +..+++|+.|++++|. +..++ ..++.
T Consensus 611 ~~L~~L~L~~s~l~~L~-------~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp--~si~~ 679 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLW-------DGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELP--SSIQY 679 (1153)
T ss_pred cCCcEEECcCccccccc-------cccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccc--hhhhc
Confidence 34666666666666554 334455566666665542 444432 4455566666665543 33333 34555
Q ss_pred CCCcCEEeeeCC
Q psy4162 131 VNSLRTLSLYGN 142 (210)
Q Consensus 131 l~~L~~L~l~~n 142 (210)
+++|+.|++++|
T Consensus 680 L~~L~~L~L~~c 691 (1153)
T PLN03210 680 LNKLEDLDMSRC 691 (1153)
T ss_pred cCCCCEEeCCCC
Confidence 555666665554
No 47
>KOG0531|consensus
Probab=98.27 E-value=3.7e-07 Score=76.70 Aligned_cols=109 Identities=23% Similarity=0.280 Sum_probs=92.1
Q ss_pred CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccC
Q psy4162 52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131 (210)
Q Consensus 52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l 131 (210)
+..++.+.+..|.+.... ..+..+.+|..+++.+|+|..+... +..+++|+.|++++|.|+.+.. +..+
T Consensus 71 l~~l~~l~l~~n~i~~~~-------~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~---l~~l 139 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKIL-------NHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG---LSTL 139 (414)
T ss_pred hHhHHhhccchhhhhhhh-------cccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc---hhhc
Confidence 344778888889988843 4466778999999999999998774 6779999999999999999875 5667
Q ss_pred CCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHHH
Q psy4162 132 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQE 176 (210)
Q Consensus 132 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 176 (210)
+.|..|++++|++..+.. +..++.|+.+++++|.+.+...
T Consensus 140 ~~L~~L~l~~N~i~~~~~-----~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 140 TLLKELNLSGNLISDISG-----LESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred cchhhheeccCcchhccC-----CccchhhhcccCCcchhhhhhh
Confidence 779999999999999987 5558899999999999887776
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.27 E-value=1.1e-06 Score=49.57 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=23.4
Q ss_pred CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCC
Q psy4162 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD 99 (210)
Q Consensus 54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 99 (210)
+|+.|++++|+|+.++ ..+..+++|+.|++++|+++.++
T Consensus 2 ~L~~L~l~~N~i~~l~-------~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLP-------PELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHG-------GHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccC-------chHhCCCCCCEEEecCCCCCCCc
Confidence 3666777777777665 33566666666666666666543
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=3.6e-06 Score=47.51 Aligned_cols=39 Identities=41% Similarity=0.491 Sum_probs=18.0
Q ss_pred CccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCcc
Q psy4162 108 NLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR 148 (210)
Q Consensus 108 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 148 (210)
+|+.|++++|+|+.++ ..+..+++|+.|++++|++++++
T Consensus 2 ~L~~L~l~~N~i~~l~--~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLP--PELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHG--GHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccC--chHhCCCCCCEEEecCCCCCCCc
Confidence 3445555555555444 22445555555555555555443
No 50
>KOG2982|consensus
Probab=98.11 E-value=8.2e-07 Score=69.85 Aligned_cols=126 Identities=18% Similarity=0.179 Sum_probs=94.3
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 129 (210)
.....++.+||.+|.|+.+..++ ..+.++|.|+.|+++.|++.......-....+|+.+-|.++.+.+...-..+.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~----~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIG----AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHH----HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence 44567999999999999987654 45678899999999999998866542235679999999999887765324567
Q ss_pred cCCCcCEEeeeCCCCCCc---cchHHHHHHhCcCcccccCCCCCHHHHHHHHHHHH
Q psy4162 130 RVNSLRTLSLYGNPIEKI---REYRAVVSTMIPQLVTLDSVFILPSEKQETNALNA 182 (210)
Q Consensus 130 ~l~~L~~L~l~~n~l~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 182 (210)
.+|.++.|+++.|.+..+ .. ..-..-+.+.+|+..+|...-|..+..+..
T Consensus 144 ~lP~vtelHmS~N~~rq~n~Dd~---c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r 196 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQLNLDDN---CIEDWSTEVLTLHQLPCLEQLWLNKNKLSR 196 (418)
T ss_pred cchhhhhhhhccchhhhhccccc---cccccchhhhhhhcCCcHHHHHHHHHhHHh
Confidence 899999999999965532 22 112234478889999998877776665554
No 51
>KOG4658|consensus
Probab=97.72 E-value=3.7e-05 Score=70.09 Aligned_cols=107 Identities=22% Similarity=0.152 Sum_probs=73.9
Q ss_pred CCCCCccEEEccCCc-cccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccc
Q psy4162 50 VGRYDTRSLWLSHNK-ISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL 128 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~-l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 128 (210)
..|+.|+.||+++|. +..+| ..++.+-+|++|++++..+..+|.. ++.+..|.+|++..+......+ ...
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP-------~~I~~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~-~i~ 638 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLP-------SSIGELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLEVTGRLESIP-GIL 638 (889)
T ss_pred hhCcceEEEECCCCCccCcCC-------hHHhhhhhhhcccccCCCccccchH-HHHHHhhheecccccccccccc-chh
Confidence 456669999998755 55555 7778888899999999888888877 7888888888888876544443 556
Q ss_pred ccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccC
Q psy4162 129 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDS 166 (210)
Q Consensus 129 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l 166 (210)
..+.+|++|.+.......... -...+..+.+|+.+..
T Consensus 639 ~~L~~Lr~L~l~~s~~~~~~~-~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 639 LELQSLRVLRLPRSALSNDKL-LLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccEEEeeccccccchh-hHHhhhcccchhhhee
Confidence 668888888887665332211 1123455555555555
No 52
>KOG4658|consensus
Probab=97.63 E-value=3.1e-05 Score=70.60 Aligned_cols=108 Identities=19% Similarity=0.118 Sum_probs=85.4
Q ss_pred CCCCCccEEEccCCc--cccccCCchhhhhccCCCCCCCEEECcCC-CCCcCCcccccCCCCccEEEccCCccCcccccc
Q psy4162 50 VGRYDTRSLWLSHNK--ISLVYGLDSLVHRTILDPDLIGWIDLSFN-NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVF 126 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~--l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 126 (210)
...+.|+.|-+..|. +..++. ..|..++.|+.||+++| .+..+|.. .+.+-+|+.|+++++.+..+| .
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~------~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP--~ 612 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISG------EFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLP--S 612 (889)
T ss_pred CCCCccceEEEeecchhhhhcCH------HHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccc--h
Confidence 334458888888886 666665 77899999999999988 56666665 788999999999999999998 6
Q ss_pred ccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCC
Q psy4162 127 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFI 169 (210)
Q Consensus 127 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~ 169 (210)
.++.+..|.+|++..+.-..... .....+++|++|.+..-
T Consensus 613 ~l~~Lk~L~~Lnl~~~~~l~~~~---~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 613 GLGNLKKLIYLNLEVTGRLESIP---GILLELQSLRVLRLPRS 652 (889)
T ss_pred HHHHHHhhheecccccccccccc---chhhhcccccEEEeecc
Confidence 68899999999999877543333 26777889988877444
No 53
>KOG3665|consensus
Probab=97.60 E-value=9.7e-05 Score=65.77 Aligned_cols=120 Identities=19% Similarity=0.169 Sum_probs=89.5
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 129 (210)
.-+|+|+.|.+++-.+..-. +. .....+++|..||+|+..++.+.. .+.+.+|+.|.+++=.+.....+..+-
T Consensus 145 ~~LPsL~sL~i~~~~~~~~d-F~----~lc~sFpNL~sLDIS~TnI~nl~G--IS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDD-FS----QLCASFPNLRSLDISGTNISNLSG--ISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred hhCcccceEEecCceecchh-HH----HHhhccCccceeecCCCCccCcHH--HhccccHHHHhccCCCCCchhhHHHHh
Confidence 34677999988887765532 11 445667899999999999998844 788999999999887887766556677
Q ss_pred cCCCcCEEeeeCCCCCCccchH---HHHHHhCcCcccccCCCCCHHHHHH
Q psy4162 130 RVNSLRTLSLYGNPIEKIREYR---AVVSTMIPQLVTLDSVFILPSEKQE 176 (210)
Q Consensus 130 ~l~~L~~L~l~~n~l~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~ 176 (210)
+|++|+.||+|.......+..- .+....+|.|+.||.+++.+.+..-
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 8999999999988876554211 1123459999999999888765543
No 54
>KOG1909|consensus
Probab=97.51 E-value=0.00014 Score=58.49 Aligned_cols=117 Identities=21% Similarity=0.169 Sum_probs=70.0
Q ss_pred CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCc----ccccCCCCccEEEccCCccCcccccccc-
Q psy4162 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK----NMFTNFPNLKILYLHKNQIEEYLSVFVL- 128 (210)
Q Consensus 54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~~~~~- 128 (210)
.|+.+.+..|.|..-.. .+....|..+++|+.|||..|-++.... ..++.+++|+.+++++|.+..-.. ..+
T Consensus 186 ~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga-~a~~ 262 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA-IAFV 262 (382)
T ss_pred ccceEEEecccccCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH-HHHH
Confidence 37777777776654321 1222556667777777777776665432 235556677777777777766543 221
Q ss_pred ----ccCCCcCEEeeeCCCCCCccchH-HHHHHhCcCcccccCCCCCHHH
Q psy4162 129 ----RRVNSLRTLSLYGNPIEKIREYR-AVVSTMIPQLVTLDSVFILPSE 173 (210)
Q Consensus 129 ----~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~ 173 (210)
...|+|+.+.+.+|.++...... .......|.|..|++++|...+
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e 312 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGE 312 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccc
Confidence 23567777777777776442211 1234456777778887777643
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.51 E-value=0.00026 Score=49.26 Aligned_cols=99 Identities=13% Similarity=0.207 Sum_probs=44.1
Q ss_pred CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS 133 (210)
Q Consensus 54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~ 133 (210)
+|+.+.+.. .+..+.. ..|..+..|+.+.+..+ +..+....|..+..++.+.+.. .+..++. ..+..++.
T Consensus 13 ~l~~i~~~~-~~~~I~~------~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~-~~F~~~~~ 82 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGE------NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD-NAFSNCTN 82 (129)
T ss_dssp T--EEEETS-T--EE-T------TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T-TTTTT-TT
T ss_pred CCCEEEECC-CeeEeCh------hhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc-cccccccc
Confidence 366666553 4555554 55666666666666553 6555555566665666666643 4444443 45555666
Q ss_pred cCEEeeeCCCCCCccchHHHHHHhCcCcccccCC
Q psy4162 134 LRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV 167 (210)
Q Consensus 134 L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~ 167 (210)
+..+.+..+ +..++. ..+... .++.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~---~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGS---SSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHT---TTTTT--T--EEE-T
T ss_pred ccccccCcc-ccEEch---hhhcCC-CceEEEEC
Confidence 666666544 444443 234444 45554443
No 56
>KOG1909|consensus
Probab=97.38 E-value=0.00034 Score=56.34 Aligned_cols=123 Identities=18% Similarity=0.128 Sum_probs=86.5
Q ss_pred CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCc----ccccCCCCccEEEccCCccCccccc--
Q psy4162 52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK----NMFTNFPNLKILYLHKNQIEEYLSV-- 125 (210)
Q Consensus 52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~~-- 125 (210)
-+.|+++..+.|++..-+.. .+...|...+.|+.+.++.|.|..-.. ..+..+++|+.|+|+.|.++....+
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~--~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGAT--ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CcceEEEEeeccccccccHH--HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 34577777777777664431 111567777889999999998765332 2367899999999999998875431
Q ss_pred -cccccCCCcCEEeeeCCCCCCccchH--HHHHHhCcCcccccCCCCCHHHHHH
Q psy4162 126 -FVLRRVNSLRTLSLYGNPIEKIREYR--AVVSTMIPQLVTLDSVFILPSEKQE 176 (210)
Q Consensus 126 -~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~ 176 (210)
..+..++.|+.+++++|.++.-.... ...-...|.|+.|.+.+|.+.....
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~ 287 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA 287 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence 45677889999999999998654321 1223447899999999998755543
No 57
>KOG3665|consensus
Probab=97.32 E-value=0.00013 Score=65.03 Aligned_cols=125 Identities=17% Similarity=0.131 Sum_probs=88.3
Q ss_pred CCCccEEEccCCccc--cccCCchhhhhccCCCCCCCEEECcCCCCCcCC-cccccCCCCccEEEccCCccCcccccccc
Q psy4162 52 RYDTRSLWLSHNKIS--LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD-KNMFTNFPNLKILYLHKNQIEEYLSVFVL 128 (210)
Q Consensus 52 l~~L~~L~ls~n~l~--~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 128 (210)
..+|+.|++++...- +++. ..-.-+|.|+.|.+++-.+..-. ...+..+++|..||+++++++.+.. +
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~------kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G---I 191 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPK------KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG---I 191 (699)
T ss_pred HHhhhhcCccccchhhccHHH------HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH---H
Confidence 345888888885532 2221 33344689999999886664432 2335678899999999999998853 6
Q ss_pred ccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHHHHHHHHHhhhhc
Q psy4162 129 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSY 187 (210)
Q Consensus 129 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 187 (210)
+.+++|+.|.+.+=.+..-.+. ..+..+++|+.||++.........+-...-.|.+.
T Consensus 192 S~LknLq~L~mrnLe~e~~~~l--~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFESYQDL--IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred hccccHHHHhccCCCCCchhhH--HHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 7899999999988888765442 35888999999999888765555444445555554
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.31 E-value=0.00046 Score=47.96 Aligned_cols=97 Identities=22% Similarity=0.261 Sum_probs=54.8
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 129 (210)
.++.+|+.+.+..+ +..+.. ..|..++.++.+.+.. .+..++...|..+.+++.+.+..+ +..++. ..+.
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~------~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~-~~f~ 101 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGD------NAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGS-SSFS 101 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-T------TTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHT-TTTT
T ss_pred cccccccccccccc-ccccce------eeeecccccccccccc-cccccccccccccccccccccCcc-ccEEch-hhhc
Confidence 56667888888775 777776 7788887888888865 666677777888888888888765 666664 6677
Q ss_pred cCCCcCEEeeeCCCCCCccchHHHHHHhCcCc
Q psy4162 130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQL 161 (210)
Q Consensus 130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L 161 (210)
+. .+..+.+.. .+..++. ..+.++++|
T Consensus 102 ~~-~l~~i~~~~-~~~~i~~---~~F~~~~~l 128 (129)
T PF13306_consen 102 NC-NLKEINIPS-NITKIEE---NAFKNCTKL 128 (129)
T ss_dssp T--T--EEE-TT-B-SS-------GGG-----
T ss_pred CC-CceEEEECC-CccEECC---ccccccccC
Confidence 76 788888765 5555554 356666655
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.11 E-value=0.0012 Score=55.05 Aligned_cols=15 Identities=27% Similarity=0.091 Sum_probs=12.4
Q ss_pred CcceeCCCCCccccc
Q psy4162 14 KIPLDLSFQQIQSLD 28 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~ 28 (210)
...|++++|.|+.+|
T Consensus 54 l~~L~Is~c~L~sLP 68 (426)
T PRK15386 54 SGRLYIKDCDIESLP 68 (426)
T ss_pred CCEEEeCCCCCcccC
Confidence 456999999888887
No 60
>KOG2739|consensus
Probab=96.83 E-value=0.00091 Score=51.82 Aligned_cols=87 Identities=20% Similarity=0.217 Sum_probs=63.6
Q ss_pred CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccc-cccCCCcCEEeeeCCCCCCccchHHHHHHhCcCc
Q psy4162 83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFV-LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQL 161 (210)
Q Consensus 83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L 161 (210)
..|+.+.+.+..++++.. +..+++|+.|.++.|.......+.. ...+|+|+++++++|+++.+... ..++.+.+|
T Consensus 43 ~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl--~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL--RPLKELENL 118 (260)
T ss_pred cchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc--chhhhhcch
Confidence 456666676777777665 7789999999999995444332222 24459999999999999865432 247788889
Q ss_pred ccccCCCCCHHH
Q psy4162 162 VTLDSVFILPSE 173 (210)
Q Consensus 162 ~~L~l~~~~~~~ 173 (210)
..||+..|.+..
T Consensus 119 ~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 119 KSLDLFNCSVTN 130 (260)
T ss_pred hhhhcccCCccc
Confidence 999998887644
No 61
>KOG2123|consensus
Probab=96.78 E-value=8.4e-05 Score=58.29 Aligned_cols=91 Identities=22% Similarity=0.183 Sum_probs=76.1
Q ss_pred CCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCc
Q psy4162 82 PDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQL 161 (210)
Q Consensus 82 l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L 161 (210)
+...+.|+.-++.+..+.- ...++.|+.|.|+-|.|+++.+ +..+++|..|+|..|.|.++... ..+.++|+|
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldEL--~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDEL--EYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHHH--HHHhcCchh
Confidence 4567778888888887755 6779999999999999999865 78899999999999999988663 468999999
Q ss_pred ccccCCCCCHHHHHHHHH
Q psy4162 162 VTLDSVFILPSEKQETNA 179 (210)
Q Consensus 162 ~~L~l~~~~~~~~~~~~~ 179 (210)
+.|=+..|+.......+.
T Consensus 91 r~LWL~ENPCc~~ag~nY 108 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNY 108 (388)
T ss_pred hhHhhccCCcccccchhH
Confidence 999999998766554443
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.55 E-value=0.009 Score=49.98 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=39.6
Q ss_pred CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC-CCCcCCcccccCCCCccEEEccCC-ccCccc
Q psy4162 52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN-NIKNVDKNMFTNFPNLKILYLHKN-QIEEYL 123 (210)
Q Consensus 52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~~~L~~L~l~~n-~i~~~~ 123 (210)
+..++.|++++|.++.+|.+ ..+|+.|.++++ .++.++.. + ..+|+.|.+++| .+..++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~L----------P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVL----------PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCCC----------CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccc
Confidence 56689999999988888742 146888888764 55555532 2 347778888777 454444
No 63
>KOG3763|consensus
Probab=96.30 E-value=0.0035 Score=53.48 Aligned_cols=90 Identities=29% Similarity=0.340 Sum_probs=64.2
Q ss_pred CCCCCCEEECcCCCCCcCCc--ccccCCCCccEEEccCC--ccCccccccccccCCCcCEEeeeCCCCCCccchHHHHH-
Q psy4162 81 DPDLIGWIDLSFNNIKNVDK--NMFTNFPNLKILYLHKN--QIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVS- 155 (210)
Q Consensus 81 ~l~~L~~L~Ls~n~i~~~~~--~~~~~~~~L~~L~l~~n--~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l- 155 (210)
..+.+..++|++|++..+.. ..-...++|+.|+|++| .+....++..+++++ |++|.+.+||+...-..|.+.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~-Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLP-LEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCC-HHHeeecCCccccchhhhHHHHH
Confidence 34677888899998877754 11234678999999999 555555555666654 9999999999986544444444
Q ss_pred ---HhCcCcccccCCCCCH
Q psy4162 156 ---TMIPQLVTLDSVFILP 171 (210)
Q Consensus 156 ---~~l~~L~~L~l~~~~~ 171 (210)
...|+|..||....+.
T Consensus 295 ~i~~~FPKL~~LDG~ev~~ 313 (585)
T KOG3763|consen 295 AIRELFPKLLRLDGVEVQP 313 (585)
T ss_pred HHHHhcchheeecCcccCc
Confidence 4899999998866654
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.05 E-value=0.019 Score=45.29 Aligned_cols=121 Identities=14% Similarity=0.086 Sum_probs=72.6
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCccc-------------ccCCCCccEEEccC
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNM-------------FTNFPNLKILYLHK 116 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-------------~~~~~~L~~L~l~~ 116 (210)
.+++.|+.++||+|.+..-.+ ....+.++....|..|.+++|.+..+...- ...-+.|+....+.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~--e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFP--EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred hcCCcceeeeccccccCcccc--hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 457788888888888765322 111144555567788888887765543211 12345677777777
Q ss_pred CccCccccc---cccccCCCcCEEeeeCCCCCC--ccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 117 NQIEEYLSV---FVLRRVNSLRTLSLYGNPIEK--IREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 117 n~i~~~~~~---~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
|++...+.. ..+.....|..+.+..|.|.. +.......+..+.+|+.||++.|...
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 777655421 112223567777777777763 34433445666777888888777653
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.68 E-value=0.0086 Score=28.13 Aligned_cols=16 Identities=25% Similarity=0.169 Sum_probs=11.3
Q ss_pred ccEEEccCCccccccC
Q psy4162 55 TRSLWLSHNKISLVYG 70 (210)
Q Consensus 55 L~~L~ls~n~l~~~~~ 70 (210)
|+.|++++|+++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 6777777777776663
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.46 E-value=0.031 Score=44.14 Aligned_cols=146 Identities=16% Similarity=0.059 Sum_probs=92.5
Q ss_pred CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccc----cC-CchhhhhccCCCCCCCEE
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV----YG-LDSLVHRTILDPDLIGWI 88 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~----~~-l~~~~~~~~~~l~~L~~L 88 (210)
.+.+|+|+|.|..-....+++.-. .-.+|+..++++-..... +. +.-+ ...+-.|++|+.+
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia-------------~~~~L~vvnfsd~ftgr~kde~~~~L~~L-l~aLlkcp~l~~v 97 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIA-------------NVRNLRVVNFSDAFTGRDKDELYSNLVML-LKALLKCPRLQKV 97 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHh-------------hhcceeEeehhhhhhcccHHHHHHHHHHH-HHHHhcCCcceee
Confidence 345888888887655544431111 112377777766543331 10 1111 2567788999999
Q ss_pred ECcCCCCCcCCc----ccccCCCCccEEEccCCccCcccccccc-------------ccCCCcCEEeeeCCCCCCccc-h
Q psy4162 89 DLSFNNIKNVDK----NMFTNFPNLKILYLHKNQIEEYLSVFVL-------------RRVNSLRTLSLYGNPIEKIRE-Y 150 (210)
Q Consensus 89 ~Ls~n~i~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~~~~~-------------~~l~~L~~L~l~~n~l~~~~~-~ 150 (210)
+||.|.+..-.+ ..++....|.+|.+++|.+..+.. ..+ ..-|.|+.+....|.+..-+. +
T Consensus 98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG-~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG-GRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred eccccccCcccchHHHHHHhcCCCceeEEeecCCCCccch-hHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH
Confidence 999998866433 234567789999999998876653 322 355789999999999875433 2
Q ss_pred HHHHHHhCcCcccccCCCCCHHHH
Q psy4162 151 RAVVSTMIPQLVTLDSVFILPSEK 174 (210)
Q Consensus 151 ~~~~l~~l~~L~~L~l~~~~~~~~ 174 (210)
....+..-..|+.+-+..|.+...
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpe 200 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPE 200 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcc
Confidence 223344445788888888876544
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.40 E-value=0.012 Score=25.84 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=7.4
Q ss_pred CccEEEccCCcccccc
Q psy4162 54 DTRSLWLSHNKISLVY 69 (210)
Q Consensus 54 ~L~~L~ls~n~l~~~~ 69 (210)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3666666666666543
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.20 E-value=0.007 Score=28.44 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=9.3
Q ss_pred CCEEECcCCCCCcCCcc
Q psy4162 85 IGWIDLSFNNIKNVDKN 101 (210)
Q Consensus 85 L~~L~Ls~n~i~~~~~~ 101 (210)
|++|++++|+++.+++.
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 45555555555554443
No 69
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.83 E-value=0.026 Score=27.50 Aligned_cols=19 Identities=21% Similarity=0.241 Sum_probs=9.9
Q ss_pred CCCCEEECcCCCCCcCCcc
Q psy4162 83 DLIGWIDLSFNNIKNVDKN 101 (210)
Q Consensus 83 ~~L~~L~Ls~n~i~~~~~~ 101 (210)
++|+.|++++|+++.++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555544
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.83 E-value=0.026 Score=27.50 Aligned_cols=19 Identities=21% Similarity=0.241 Sum_probs=9.9
Q ss_pred CCCCEEECcCCCCCcCCcc
Q psy4162 83 DLIGWIDLSFNNIKNVDKN 101 (210)
Q Consensus 83 ~~L~~L~Ls~n~i~~~~~~ 101 (210)
++|+.|++++|+++.++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555544
No 71
>KOG2120|consensus
Probab=94.61 E-value=0.0019 Score=51.34 Aligned_cols=124 Identities=18% Similarity=0.079 Sum_probs=68.4
Q ss_pred CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCC-ccCccccccccccCC
Q psy4162 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKN-QIEEYLSVFVLRRVN 132 (210)
Q Consensus 54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~l~ 132 (210)
.++.+||+...|+.-.- . ..++.+.+|+.|.+.++++.......++.-..|..|+++.+ ++++..--..+..+.
T Consensus 186 Rlq~lDLS~s~it~stl-~----~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTL-H----GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHHH-H----HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence 37888888887775321 1 33445566666666666665544444455556666666554 344433112245566
Q ss_pred CcCEEeeeCCCCCCc------------------cchH--------HHHHHhCcCcccccCCCCCHHHHHHHHHHHH
Q psy4162 133 SLRTLSLYGNPIEKI------------------REYR--------AVVSTMIPQLVTLDSVFILPSEKQETNALNA 182 (210)
Q Consensus 133 ~L~~L~l~~n~l~~~------------------~~~~--------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 182 (210)
.|..|+++++.+... ..+| ....+++|+|..||++.+-.....-+.++..
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 666666666643211 0011 1245678888888887776544444444443
No 72
>KOG0473|consensus
Probab=94.58 E-value=0.00069 Score=51.98 Aligned_cols=88 Identities=20% Similarity=0.083 Sum_probs=62.0
Q ss_pred cCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhC
Q psy4162 79 ILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMI 158 (210)
Q Consensus 79 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l 158 (210)
+......+.||++.|++..+... |+-+..+..++++.|++...+ .-++.+..+..+++..|..+..|. .+...
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~--~d~~q~~e~~~~~~~~n~~~~~p~----s~~k~ 110 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLP--KDAKQQRETVNAASHKNNHSQQPK----SQKKE 110 (326)
T ss_pred hhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhCh--hhHHHHHHHHHHHhhccchhhCCc----ccccc
Confidence 33345677778888877777665 666777777888888777776 335566667777777777777776 67777
Q ss_pred cCcccccCCCCCHHH
Q psy4162 159 PQLVTLDSVFILPSE 173 (210)
Q Consensus 159 ~~L~~L~l~~~~~~~ 173 (210)
|+++.++..+++...
T Consensus 111 ~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 111 PHPKKNEQKKTEFFR 125 (326)
T ss_pred CCcchhhhccCcchH
Confidence 778888877776533
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.27 E-value=0.037 Score=26.97 Aligned_cols=18 Identities=33% Similarity=0.265 Sum_probs=16.3
Q ss_pred CCccEEEccCCccccccC
Q psy4162 53 YDTRSLWLSHNKISLVYG 70 (210)
Q Consensus 53 ~~L~~L~ls~n~l~~~~~ 70 (210)
.+|+.|++++|+|+.++.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 459999999999999986
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.27 E-value=0.037 Score=26.97 Aligned_cols=18 Identities=33% Similarity=0.265 Sum_probs=16.3
Q ss_pred CCccEEEccCCccccccC
Q psy4162 53 YDTRSLWLSHNKISLVYG 70 (210)
Q Consensus 53 ~~L~~L~ls~n~l~~~~~ 70 (210)
.+|+.|++++|+|+.++.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 459999999999999986
No 75
>KOG0473|consensus
Probab=94.05 E-value=0.00086 Score=51.46 Aligned_cols=104 Identities=17% Similarity=0.079 Sum_probs=82.2
Q ss_pred cceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC
Q psy4162 15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN 94 (210)
Q Consensus 15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~ 94 (210)
.+-|++...++.++...+..+.. .+.||++.|++-.+- ..|+-+..+..++++.|+
T Consensus 21 ~tc~~s~s~~s~~~v~ei~~~kr-----------------~tvld~~s~r~vn~~-------~n~s~~t~~~rl~~sknq 76 (326)
T KOG0473|consen 21 ETCDLSLSELSEIPVREIASFKR-----------------VTVLDLSSNRLVNLG-------KNFSILTRLVRLDLSKNQ 76 (326)
T ss_pred cccCCCHHHhcccchhhhhccce-----------------eeeehhhhhHHHhhc-------cchHHHHHHHHHhccHhh
Confidence 44566666667777655554444 899999999988775 566677888999999999
Q ss_pred CCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCC
Q psy4162 95 IKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIE 145 (210)
Q Consensus 95 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~ 145 (210)
+..++.+ ++....+..+++-.|..+..| ..++..+.++.+++.+|++.
T Consensus 77 ~~~~~~d-~~q~~e~~~~~~~~n~~~~~p--~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 77 IKFLPKD-AKQQRETVNAASHKNNHSQQP--KSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HhhChhh-HHHHHHHHHHHhhccchhhCC--ccccccCCcchhhhccCcch
Confidence 9988877 677778888888888888887 67888999999999999864
No 76
>KOG3864|consensus
Probab=92.45 E-value=0.031 Score=42.03 Aligned_cols=83 Identities=20% Similarity=0.173 Sum_probs=59.0
Q ss_pred CCCEEECcCCCCCcCCcccccCCCCccEEEccCCc-cCcccccccccc-CCCcCEEeeeCCC-CCCccchHHHHHHhCcC
Q psy4162 84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQ-IEEYLSVFVLRR-VNSLRTLSLYGNP-IEKIREYRAVVSTMIPQ 160 (210)
Q Consensus 84 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~-l~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~ 160 (210)
.++.++-++..|....-..+.+++.++.|.+..+. +..+. ++.+++ .++|+.|++++|+ |++-.- ..+..+++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-L~~l~~~~~~L~~L~lsgC~rIT~~GL---~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-LERLGGLAPSLQDLDLSGCPRITDGGL---ACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH-HHHhcccccchheeeccCCCeechhHH---HHHHHhhh
Confidence 46788888888888777668888888888887774 44544 244444 5799999999887 443332 45777777
Q ss_pred cccccCCCCC
Q psy4162 161 LVTLDSVFIL 170 (210)
Q Consensus 161 L~~L~l~~~~ 170 (210)
|+.|++..-+
T Consensus 178 Lr~L~l~~l~ 187 (221)
T KOG3864|consen 178 LRRLHLYDLP 187 (221)
T ss_pred hHHHHhcCch
Confidence 7777776554
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=92.23 E-value=0.14 Score=25.08 Aligned_cols=18 Identities=39% Similarity=0.399 Sum_probs=12.9
Q ss_pred CccEEEccCCccccccCC
Q psy4162 54 DTRSLWLSHNKISLVYGL 71 (210)
Q Consensus 54 ~L~~L~ls~n~l~~~~~l 71 (210)
+|+.|++++|+|+.+.++
T Consensus 3 ~L~~L~L~~NkI~~IEnL 20 (26)
T smart00365 3 NLEELDLSQNKIKKIENL 20 (26)
T ss_pred ccCEEECCCCccceecCc
Confidence 477777877777777653
No 78
>KOG1947|consensus
Probab=89.62 E-value=0.27 Score=41.75 Aligned_cols=16 Identities=25% Similarity=0.113 Sum_probs=7.5
Q ss_pred HHhCcCcccccCCCCC
Q psy4162 155 STMIPQLVTLDSVFIL 170 (210)
Q Consensus 155 l~~l~~L~~L~l~~~~ 170 (210)
...++.|+.|++..+.
T Consensus 291 ~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCH 306 (482)
T ss_pred HHhcCcccEEeeecCc
Confidence 3444445555554443
No 79
>KOG1947|consensus
Probab=87.46 E-value=0.44 Score=40.45 Aligned_cols=117 Identities=21% Similarity=0.132 Sum_probs=70.5
Q ss_pred CCCCCccEEEccCC-ccccccCCchhhhhccCCCCCCCEEECcCCC-CCcCCccccc-CCCCccEEEccCCc-cCccccc
Q psy4162 50 VGRYDTRSLWLSHN-KISLVYGLDSLVHRTILDPDLIGWIDLSFNN-IKNVDKNMFT-NFPNLKILYLHKNQ-IEEYLSV 125 (210)
Q Consensus 50 ~~l~~L~~L~ls~n-~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~-~~~~L~~L~l~~n~-i~~~~~~ 125 (210)
..++.|+.|+++++ ......+.... .....+.+|+.++++++. ++...-..+. .++.|+.|.+.++. ++...-.
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~ 288 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLL--LLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV 288 (482)
T ss_pred hhCchhheecccCcccccccchhHhh--hhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence 66778888888873 11111110000 234455788899998886 5554432233 37899999987776 5655422
Q ss_pred cccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCC
Q psy4162 126 FVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFI 169 (210)
Q Consensus 126 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~ 169 (210)
.....++.|+.|+++++.......... ....+++++.|.+...
T Consensus 289 ~i~~~~~~L~~L~l~~c~~~~d~~l~~-~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 289 SIAERCPSLRELDLSGCHGLTDSGLEA-LLKNCPNLRELKLLSL 331 (482)
T ss_pred HHHHhcCcccEEeeecCccchHHHHHH-HHHhCcchhhhhhhhc
Confidence 334568889999999887653333222 2555777666554433
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.33 E-value=0.43 Score=22.54 Aligned_cols=14 Identities=36% Similarity=0.378 Sum_probs=7.5
Q ss_pred CccEEEccCCcccc
Q psy4162 54 DTRSLWLSHNKISL 67 (210)
Q Consensus 54 ~L~~L~ls~n~l~~ 67 (210)
+|+.|++++|+|+.
T Consensus 3 ~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 3 NLETLDLSNNQITD 16 (24)
T ss_dssp T-SEEE-TSSBEHH
T ss_pred CCCEEEccCCcCCH
Confidence 46666666666654
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.31 E-value=0.6 Score=22.85 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=9.1
Q ss_pred CCCEEECcCCCCCcCCc
Q psy4162 84 LIGWIDLSFNNIKNVDK 100 (210)
Q Consensus 84 ~L~~L~Ls~n~i~~~~~ 100 (210)
+|+.|++++|+++.++.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45555555555555543
No 82
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=85.71 E-value=0.7 Score=22.61 Aligned_cols=22 Identities=36% Similarity=0.586 Sum_probs=18.3
Q ss_pred cchHHHHHHhCcCcccccCCCC
Q psy4162 148 REYRAVVSTMIPQLVTLDSVFI 169 (210)
Q Consensus 148 ~~~~~~~l~~l~~L~~L~l~~~ 169 (210)
+.||..++..+|+|+.||....
T Consensus 2 ~~YR~~Vi~~LPqL~~LD~~~~ 23 (26)
T smart00446 2 AHYREKVIRLLPQLRKLDXXXX 23 (26)
T ss_pred ccHHHHHHHHCCccceeccccc
Confidence 3578899999999999998543
No 83
>KOG3864|consensus
Probab=85.38 E-value=0.1 Score=39.34 Aligned_cols=84 Identities=20% Similarity=0.133 Sum_probs=58.0
Q ss_pred ccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC-CCcCCccccc-CCCCccEEEccCC-ccCccccccccccC
Q psy4162 55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN-IKNVDKNMFT-NFPNLKILYLHKN-QIEEYLSVFVLRRV 131 (210)
Q Consensus 55 L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~-~~~~L~~L~l~~n-~i~~~~~~~~~~~l 131 (210)
++.+|-++..|...-- ..+..++.++.|.+.+++ +....-..++ ..++|+.|++++| +|++.. +..+..+
T Consensus 103 IeaVDAsds~I~~eGl------e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~l 175 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGL------EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-LACLLKL 175 (221)
T ss_pred EEEEecCCchHHHHHH------HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-HHHHHHh
Confidence 7788888888776543 567777888888777663 3222111122 3579999999987 588776 4778888
Q ss_pred CCcCEEeeeCCCCC
Q psy4162 132 NSLRTLSLYGNPIE 145 (210)
Q Consensus 132 ~~L~~L~l~~n~l~ 145 (210)
++|+.|.+.+=+..
T Consensus 176 knLr~L~l~~l~~v 189 (221)
T KOG3864|consen 176 KNLRRLHLYDLPYV 189 (221)
T ss_pred hhhHHHHhcCchhh
Confidence 88888887765543
No 84
>KOG3763|consensus
Probab=80.46 E-value=1.1 Score=38.85 Aligned_cols=68 Identities=25% Similarity=0.121 Sum_probs=48.0
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC--CCCcCCcccccCCCCccEEEccCCccCc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN--NIKNVDKNMFTNFPNLKILYLHKNQIEE 121 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 121 (210)
...+.+..+.|++|++..+..+..+. ...|.|..|+|++| .+.....-.--...-|+.|.+.+|.+.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~ssls----q~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLS----QIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHH----HhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 45666899999999999998876553 22378999999999 4444322101123457889999998865
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=79.15 E-value=0.6 Score=47.59 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=33.9
Q ss_pred EccCCccCccccccccccCCCcCEEeeeCCCCCCccch
Q psy4162 113 YLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY 150 (210)
Q Consensus 113 ~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 150 (210)
+|++|+|+.+++ ..|..+++|+.|+|++|++.+.+..
T Consensus 1 DLSnN~LstLp~-g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEE-GICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccCh-HHhccCCCceEEEeeCCcccccccc
Confidence 588999999997 8999999999999999999998874
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=77.95 E-value=1.7 Score=44.62 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=30.5
Q ss_pred ECcCCCCCcCCcccccCCCCccEEEccCCccCcc
Q psy4162 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEY 122 (210)
Q Consensus 89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 122 (210)
||++|+|+.++...|..+.+|+.|+|++|.+.--
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 5899999999999999999999999999987543
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=77.03 E-value=1.9 Score=21.28 Aligned_cols=14 Identities=43% Similarity=0.394 Sum_probs=9.2
Q ss_pred CccEEEccCCcccc
Q psy4162 54 DTRSLWLSHNKISL 67 (210)
Q Consensus 54 ~L~~L~ls~n~l~~ 67 (210)
+|+.|+|++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 36777777777654
No 88
>KOG2120|consensus
Probab=70.99 E-value=1 Score=36.42 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=42.2
Q ss_pred CCCEEECcCCCCCcCC-cccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCC-CCCccchHHHHHHhCcCc
Q psy4162 84 LIGWIDLSFNNIKNVD-KNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNP-IEKIREYRAVVSTMIPQL 161 (210)
Q Consensus 84 ~L~~L~Ls~n~i~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~L 161 (210)
.|+.+||+...|+.-. ...+..|.+|+.|.+.++++.+-.. ..+..-..|+.++++++. ++.... ...+..++.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~--~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENAL--QLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHH--HHHHHhhhhH
Confidence 3555666555543321 1123445566666666666555332 344445556666666442 332211 1245666666
Q ss_pred ccccCCCCC
Q psy4162 162 VTLDSVFIL 170 (210)
Q Consensus 162 ~~L~l~~~~ 170 (210)
+.|+++.+.
T Consensus 263 ~~LNlsWc~ 271 (419)
T KOG2120|consen 263 DELNLSWCF 271 (419)
T ss_pred hhcCchHhh
Confidence 666666654
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=45.50 E-value=21 Score=16.92 Aligned_cols=12 Identities=33% Similarity=0.230 Sum_probs=5.7
Q ss_pred cCcccccCCCCC
Q psy4162 159 PQLVTLDSVFIL 170 (210)
Q Consensus 159 ~~L~~L~l~~~~ 170 (210)
++|+.|++++++
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 344455554443
No 90
>KOG4341|consensus
Probab=31.74 E-value=70 Score=27.37 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=41.0
Q ss_pred CCCCccEEEccCCc-cCcccccccc----ccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHHHHHH
Q psy4162 105 NFPNLKILYLHKNQ-IEEYLSVFVL----RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNA 179 (210)
Q Consensus 105 ~~~~L~~L~l~~n~-i~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 179 (210)
+++.|+.+.++++. ++... +..+ .++..|..+-+++++...... ...+..++.|+.+++-++.--.+..+..
T Consensus 370 ~C~~lr~lslshce~itD~g-i~~l~~~~c~~~~l~~lEL~n~p~i~d~~--Le~l~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEG-IRHLSSSSCSLEGLEVLELDNCPLITDAT--LEHLSICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred CCchhccCChhhhhhhhhhh-hhhhhhccccccccceeeecCCCCchHHH--HHHHhhCcccceeeeechhhhhhhhhHH
Confidence 45566666666553 22221 1111 234566666667666654322 1346667777777777666666666655
Q ss_pred HHH
Q psy4162 180 LNA 182 (210)
Q Consensus 180 ~~~ 182 (210)
+..
T Consensus 447 ~~~ 449 (483)
T KOG4341|consen 447 FAT 449 (483)
T ss_pred HHh
Confidence 554
No 91
>KOG4308|consensus
Probab=25.31 E-value=3.5 Score=35.66 Aligned_cols=14 Identities=29% Similarity=0.150 Sum_probs=7.8
Q ss_pred CCccEEEccCCccc
Q psy4162 53 YDTRSLWLSHNKIS 66 (210)
Q Consensus 53 ~~L~~L~ls~n~l~ 66 (210)
..|+.|++++|.+.
T Consensus 115 ~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLG 128 (478)
T ss_pred ccHhHhhcccCCCc
Confidence 33555666666555
Done!