Query psy4162
Match_columns 210
No_of_seqs 151 out of 3290
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 18:29:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v9t_B SLIT homolog 2 protein 99.8 1E-18 3.6E-23 133.1 11.7 132 14-172 34-165 (220)
2 1a9n_A U2A', U2A'; complex (nu 99.8 2E-18 6.8E-23 127.0 12.4 143 13-182 20-163 (176)
3 2v70_A SLIT-2, SLIT homolog 2 99.8 3.4E-18 1.2E-22 130.3 11.6 113 51-173 55-167 (220)
4 3e6j_A Variable lymphocyte rec 99.8 5.6E-18 1.9E-22 129.8 12.1 112 50-172 61-172 (229)
5 4g8a_A TOLL-like receptor 4; l 99.8 4.7E-18 1.6E-22 146.9 11.4 135 11-173 51-187 (635)
6 3m19_A Variable lymphocyte rec 99.7 8.6E-18 2.9E-22 130.3 11.1 152 12-173 35-193 (251)
7 3m19_A Variable lymphocyte rec 99.7 1.2E-17 4E-22 129.6 11.8 149 15-173 17-169 (251)
8 2o6s_A Variable lymphocyte rec 99.7 1.6E-17 5.4E-22 125.2 12.1 132 13-171 29-160 (208)
9 1p9a_G Platelet glycoprotein I 99.7 7.1E-17 2.4E-21 127.9 13.2 150 12-172 31-208 (290)
10 2xot_A Amphoterin-induced prot 99.7 2.6E-17 8.9E-22 134.2 10.7 150 13-172 40-202 (361)
11 2ell_A Acidic leucine-rich nuc 99.7 3E-17 1E-21 119.7 9.3 137 11-173 23-161 (168)
12 2o6q_A Variable lymphocyte rec 99.7 5E-17 1.7E-21 127.3 11.2 151 13-173 38-195 (270)
13 2wfh_A SLIT homolog 2 protein 99.7 5.1E-17 1.8E-21 121.3 10.0 128 14-172 12-139 (193)
14 2o6q_A Variable lymphocyte rec 99.7 9.6E-17 3.3E-21 125.7 11.6 148 14-171 63-217 (270)
15 3rfs_A Internalin B, repeat mo 99.7 9.4E-17 3.2E-21 125.9 11.6 147 13-171 64-217 (272)
16 1p9a_G Platelet glycoprotein I 99.7 1.4E-16 4.7E-21 126.3 10.7 127 14-149 79-212 (290)
17 2z62_A TOLL-like receptor 4, v 99.7 2E-16 6.8E-21 124.1 11.4 132 12-171 28-161 (276)
18 1ozn_A Reticulon 4 receptor; N 99.7 2.1E-16 7.1E-21 124.6 11.2 151 13-173 81-239 (285)
19 1w8a_A SLIT protein; signaling 99.7 1.1E-16 3.6E-21 119.4 8.8 129 14-172 10-139 (192)
20 2o6r_A Variable lymphocyte rec 99.7 2.7E-16 9.1E-21 115.6 10.7 129 15-173 10-138 (177)
21 2v9t_B SLIT homolog 2 protein 99.7 1.4E-16 4.9E-21 121.2 9.4 130 14-173 13-142 (220)
22 3e6j_A Variable lymphocyte rec 99.7 2.8E-16 9.7E-21 120.3 11.1 130 13-173 20-149 (229)
23 2je0_A Acidic leucine-rich nuc 99.7 2.1E-16 7.3E-21 112.8 9.3 129 13-167 18-148 (149)
24 2xot_A Amphoterin-induced prot 99.7 4.4E-16 1.5E-20 126.9 11.5 116 51-173 62-177 (361)
25 3rfs_A Internalin B, repeat mo 99.7 5.5E-16 1.9E-20 121.5 11.6 148 14-173 43-195 (272)
26 1ozn_A Reticulon 4 receptor; N 99.7 6.2E-16 2.1E-20 121.8 11.7 152 12-173 32-191 (285)
27 4g8a_A TOLL-like receptor 4; l 99.7 2.9E-16 9.8E-21 135.7 9.6 128 15-172 34-161 (635)
28 2wfh_A SLIT homolog 2 protein 99.6 1.6E-15 5.4E-20 113.2 11.7 114 12-150 31-144 (193)
29 2v70_A SLIT-2, SLIT homolog 2 99.6 4.8E-16 1.6E-20 118.3 9.0 131 14-173 13-143 (220)
30 3v47_A TOLL-like receptor 5B a 99.6 7E-16 2.4E-20 128.9 10.2 134 14-174 277-410 (455)
31 4ezg_A Putative uncharacterize 99.6 1.7E-15 5.8E-20 113.2 10.8 144 14-173 46-195 (197)
32 3vq2_A TLR4, TOLL-like recepto 99.6 2.1E-15 7.2E-20 130.3 12.4 131 13-171 33-165 (606)
33 3zyi_A Leucine-rich repeat-con 99.6 1E-15 3.6E-20 128.1 10.2 149 13-173 76-232 (452)
34 2id5_A Lingo-1, leucine rich r 99.6 8.1E-16 2.8E-20 129.4 9.2 152 12-173 32-190 (477)
35 3g39_A Variable lymphocyte rec 99.6 2.5E-15 8.5E-20 109.9 10.6 109 14-149 11-119 (170)
36 2z63_A TOLL-like receptor 4, v 99.6 2.4E-15 8.3E-20 128.8 11.8 132 12-171 28-161 (570)
37 3zyj_A Leucine-rich repeat-con 99.6 1.5E-15 5.2E-20 126.7 10.2 149 13-173 65-221 (440)
38 2o6s_A Variable lymphocyte rec 99.6 2.1E-15 7.2E-20 113.5 10.0 129 15-173 10-138 (208)
39 1w8a_A SLIT protein; signaling 99.6 3.8E-15 1.3E-19 111.0 11.0 113 13-149 30-143 (192)
40 2o6r_A Variable lymphocyte rec 99.6 5.5E-15 1.9E-19 108.5 11.5 113 13-149 29-141 (177)
41 2xwt_C Thyrotropin receptor; s 99.6 7.3E-16 2.5E-20 118.5 7.0 146 11-169 30-189 (239)
42 3o6n_A APL1; leucine-rich repe 99.6 1.9E-15 6.4E-20 124.1 9.2 127 14-147 47-180 (390)
43 3t6q_A CD180 antigen; protein- 99.6 2.6E-15 8.9E-20 129.7 10.6 152 11-172 32-192 (606)
44 2r9u_A Variable lymphocyte rec 99.6 6.4E-15 2.2E-19 108.2 10.7 110 13-149 13-122 (174)
45 1ziw_A TOLL-like receptor 3; i 99.6 2.1E-15 7.2E-20 132.0 9.2 117 50-170 501-620 (680)
46 3zyj_A Leucine-rich repeat-con 99.6 3.9E-15 1.3E-19 124.3 10.4 149 13-173 89-245 (440)
47 1dce_A Protein (RAB geranylger 99.6 3.5E-15 1.2E-19 128.4 10.4 124 14-166 443-567 (567)
48 2z80_A TOLL-like receptor 2, v 99.6 2.3E-15 8E-20 122.0 8.5 152 13-174 53-213 (353)
49 2id5_A Lingo-1, leucine rich r 99.6 5.6E-15 1.9E-19 124.3 10.8 149 13-171 57-212 (477)
50 2z62_A TOLL-like receptor 4, v 99.6 6E-15 2.1E-19 115.6 10.3 111 13-147 53-164 (276)
51 2z66_A Variable lymphocyte rec 99.6 3.1E-15 1.1E-19 118.9 8.4 152 13-174 102-263 (306)
52 3zyi_A Leucine-rich repeat-con 99.6 4.8E-15 1.7E-19 124.1 9.9 149 13-173 100-256 (452)
53 3oja_B Anopheles plasmodium-re 99.6 4.6E-15 1.6E-19 128.4 9.8 130 14-170 53-182 (597)
54 1ziw_A TOLL-like receptor 3; i 99.6 7.3E-15 2.5E-19 128.6 9.8 151 12-172 25-184 (680)
55 2z66_A Variable lymphocyte rec 99.6 4.9E-15 1.7E-19 117.7 8.0 150 13-173 79-237 (306)
56 1xeu_A Internalin C; cellular 99.6 2.7E-14 9.3E-19 111.5 11.5 137 14-171 43-184 (263)
57 3v47_A TOLL-like receptor 5B a 99.6 2.6E-14 8.9E-19 119.3 11.5 136 11-171 29-166 (455)
58 3o6n_A APL1; leucine-rich repe 99.6 3.9E-14 1.3E-18 116.2 12.3 123 14-146 71-200 (390)
59 2z81_A CD282 antigen, TOLL-lik 99.5 8.2E-15 2.8E-19 125.1 8.1 149 13-171 27-184 (549)
60 3o53_A Protein LRIM1, AGAP0063 99.5 1.5E-14 5.1E-19 115.7 8.5 109 50-172 141-250 (317)
61 2z80_A TOLL-like receptor 2, v 99.5 7.9E-15 2.7E-19 118.9 6.9 152 13-173 77-236 (353)
62 3oja_B Anopheles plasmodium-re 99.5 5.5E-14 1.9E-18 121.6 12.1 110 14-147 77-186 (597)
63 1h6t_A Internalin B; cell adhe 99.5 6.2E-14 2.1E-18 111.0 11.3 81 81-171 132-212 (291)
64 4fmz_A Internalin; leucine ric 99.5 6.1E-14 2.1E-18 113.1 11.4 141 14-172 201-346 (347)
65 1xku_A Decorin; proteoglycan, 99.5 6.5E-14 2.2E-18 112.4 11.2 128 14-171 54-204 (330)
66 2xwt_C Thyrotropin receptor; s 99.5 7.4E-15 2.5E-19 112.8 5.4 147 13-172 56-218 (239)
67 3g39_A Variable lymphocyte rec 99.5 3.5E-14 1.2E-18 103.7 8.7 105 55-172 11-115 (170)
68 3vq2_A TLR4, TOLL-like recepto 99.5 4.4E-14 1.5E-18 122.0 10.7 150 13-173 400-559 (606)
69 1xeu_A Internalin C; cellular 99.5 3.4E-14 1.2E-18 110.9 8.9 119 14-148 65-188 (263)
70 1h6u_A Internalin H; cell adhe 99.5 1E-13 3.6E-18 110.5 11.6 141 15-175 66-211 (308)
71 4fcg_A Uncharacterized protein 99.5 2.9E-14 9.9E-19 114.7 8.2 144 14-171 83-241 (328)
72 3t6q_A CD180 antigen; protein- 99.5 8.6E-14 3E-18 120.2 11.6 146 14-170 59-213 (606)
73 1xku_A Decorin; proteoglycan, 99.5 7E-14 2.4E-18 112.2 10.2 146 13-172 122-276 (330)
74 2ft3_A Biglycan; proteoglycan, 99.5 5.1E-14 1.8E-18 113.2 9.3 85 83-172 193-277 (332)
75 2z7x_B TOLL-like receptor 1, v 99.5 2.3E-14 8E-19 121.7 7.7 105 52-171 44-150 (520)
76 3oja_A Leucine-rich immune mol 99.5 2.4E-14 8.4E-19 121.1 7.4 109 50-172 141-250 (487)
77 1wwl_A Monocyte differentiatio 99.5 4.5E-14 1.5E-18 112.7 8.6 114 50-171 170-286 (312)
78 2r9u_A Variable lymphocyte rec 99.5 7.1E-14 2.4E-18 102.5 8.9 105 55-172 14-118 (174)
79 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 4.4E-14 1.5E-18 121.2 9.0 123 15-146 34-160 (562)
80 1h6t_A Internalin B; cell adhe 99.5 1.6E-13 5.4E-18 108.6 11.6 140 14-173 48-192 (291)
81 1h6u_A Internalin H; cell adhe 99.5 2.1E-13 7.3E-18 108.7 11.8 141 14-174 43-188 (308)
82 1ds9_A Outer arm dynein; leuci 99.5 2.1E-16 7.3E-21 118.2 -5.4 104 55-172 50-153 (198)
83 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.1E-13 3.9E-18 118.7 10.7 63 50-121 97-160 (562)
84 2z63_A TOLL-like receptor 4, v 99.5 1E-13 3.5E-18 118.7 10.1 131 14-171 54-189 (570)
85 2ft3_A Biglycan; proteoglycan, 99.5 1.6E-13 5.3E-18 110.3 10.5 85 51-145 76-160 (332)
86 3j0a_A TOLL-like receptor 5; m 99.5 8.7E-14 3E-18 124.8 9.9 153 10-171 22-186 (844)
87 2je0_A Acidic leucine-rich nuc 99.5 9.6E-14 3.3E-18 98.9 8.1 111 53-175 17-129 (149)
88 2z7x_B TOLL-like receptor 1, v 99.5 2.1E-13 7.2E-18 115.8 10.9 151 13-176 325-485 (520)
89 1wwl_A Monocyte differentiatio 99.5 4E-14 1.4E-18 113.0 5.9 117 50-173 118-242 (312)
90 1ogq_A PGIP-2, polygalacturona 99.5 9E-14 3.1E-18 111.1 7.8 106 54-172 175-281 (313)
91 2ifg_A High affinity nerve gro 99.5 3.6E-13 1.2E-17 108.8 11.2 110 15-151 11-122 (347)
92 1m9s_A Internalin B; cell inva 99.5 3.1E-13 1.1E-17 117.1 11.4 139 14-172 67-210 (605)
93 2z81_A CD282 antigen, TOLL-lik 99.5 4.3E-13 1.5E-17 114.5 12.1 112 51-175 385-513 (549)
94 1ogq_A PGIP-2, polygalacturona 99.5 2E-13 6.7E-18 109.1 9.1 103 55-170 199-302 (313)
95 4ezg_A Putative uncharacterize 99.5 1.1E-13 3.7E-18 103.4 7.1 110 50-173 63-173 (197)
96 2ell_A Acidic leucine-rich nuc 99.5 1.3E-13 4.3E-18 100.3 7.3 111 53-175 24-136 (168)
97 4fcg_A Uncharacterized protein 99.5 2.6E-13 9E-18 109.1 9.8 104 53-168 206-310 (328)
98 4glp_A Monocyte differentiatio 99.5 7.8E-14 2.7E-18 111.2 6.4 83 80-171 221-306 (310)
99 1a9n_A U2A', U2A'; complex (nu 99.4 2.2E-13 7.6E-18 99.8 8.3 112 51-174 17-128 (176)
100 4glp_A Monocyte differentiatio 99.4 6.1E-14 2.1E-18 111.8 5.6 90 52-147 144-239 (310)
101 4b8c_D Glucose-repressible alc 99.4 1.1E-13 3.8E-18 122.3 7.3 111 50-174 221-331 (727)
102 4fmz_A Internalin; leucine ric 99.4 9.2E-13 3.2E-17 106.2 12.1 144 13-174 178-326 (347)
103 3rgz_A Protein brassinosteroid 99.4 6.1E-13 2.1E-17 118.2 10.7 149 13-172 395-551 (768)
104 3o53_A Protein LRIM1, AGAP0063 99.4 1.7E-13 5.8E-18 109.6 6.4 144 13-173 81-228 (317)
105 3oja_A Leucine-rich immune mol 99.4 1.8E-13 6.3E-18 115.7 6.6 144 13-173 81-228 (487)
106 3rgz_A Protein brassinosteroid 99.4 8.3E-13 2.8E-17 117.4 10.9 148 13-172 369-527 (768)
107 1m9s_A Internalin B; cell inva 99.4 1.3E-12 4.5E-17 113.1 11.5 140 14-173 45-189 (605)
108 4eco_A Uncharacterized protein 99.4 9.6E-13 3.3E-17 114.7 10.4 143 15-172 436-600 (636)
109 4eco_A Uncharacterized protein 99.4 8.3E-13 2.8E-17 115.1 9.8 103 52-166 432-543 (636)
110 3j0a_A TOLL-like receptor 5; m 99.4 2E-12 6.8E-17 116.0 11.7 111 13-147 267-377 (844)
111 4ecn_A Leucine-rich repeat pro 99.4 2.9E-12 9.8E-17 115.0 11.5 143 15-172 676-840 (876)
112 2ifg_A High affinity nerve gro 99.4 5.6E-13 1.9E-17 107.7 6.4 104 56-172 11-116 (347)
113 1o6v_A Internalin A; bacterial 99.4 3.6E-12 1.2E-16 107.0 11.3 140 14-173 223-367 (466)
114 1dce_A Protein (RAB geranylger 99.4 1.9E-12 6.3E-17 111.4 9.1 104 54-173 442-547 (567)
115 4b8c_D Glucose-repressible alc 99.4 5.4E-13 1.8E-17 117.9 5.7 88 52-149 246-333 (727)
116 3cvr_A Invasion plasmid antige 99.3 6E-12 2.1E-16 108.2 10.7 134 14-175 102-246 (571)
117 4ecn_A Leucine-rich repeat pro 99.3 4.3E-12 1.5E-16 113.9 10.1 124 14-148 699-843 (876)
118 4ay9_X Follicle-stimulating ho 99.3 1.4E-12 4.7E-17 105.7 6.3 90 12-124 30-121 (350)
119 1o6v_A Internalin A; bacterial 99.3 1.6E-11 5.6E-16 103.0 11.9 142 13-174 200-346 (466)
120 4ay9_X Follicle-stimulating ho 99.3 2.9E-12 1E-16 103.8 6.0 108 15-149 12-121 (350)
121 3bz5_A Internalin-J, INLJ; leu 99.3 2.7E-11 9.2E-16 101.7 11.4 136 14-173 44-184 (457)
122 3goz_A Leucine-rich repeat-con 99.3 2.5E-12 8.5E-17 104.6 4.7 159 13-173 23-210 (362)
123 3g06_A SSPH2 (leucine-rich rep 99.2 5.4E-11 1.8E-15 103.3 12.1 80 83-175 221-300 (622)
124 1jl5_A Outer protein YOPM; leu 99.2 6.1E-11 2.1E-15 99.4 11.6 61 50-122 150-210 (454)
125 1ds9_A Outer arm dynein; leuci 99.2 2.3E-13 7.7E-18 101.7 -3.3 136 14-177 50-192 (198)
126 3bz5_A Internalin-J, INLJ; leu 99.2 6.5E-11 2.2E-15 99.3 10.5 136 13-173 65-205 (457)
127 3cvr_A Invasion plasmid antige 99.2 6E-11 2E-15 102.0 10.4 100 54-172 121-220 (571)
128 3goz_A Leucine-rich repeat-con 99.2 7.2E-12 2.5E-16 101.9 4.1 159 13-174 52-240 (362)
129 1jl5_A Outer protein YOPM; leu 99.2 1.5E-10 5.2E-15 97.0 10.4 98 53-172 131-228 (454)
130 2ca6_A RAN GTPase-activating p 99.1 3.9E-11 1.3E-15 98.2 5.3 121 51-175 185-319 (386)
131 3g06_A SSPH2 (leucine-rich rep 99.1 2.8E-10 9.7E-15 98.8 10.0 37 83-123 121-157 (622)
132 2ast_B S-phase kinase-associat 99.1 6.3E-11 2.2E-15 94.9 5.6 111 50-170 90-206 (336)
133 2ast_B S-phase kinase-associat 99.1 2.3E-11 7.7E-16 97.5 2.7 86 79-169 164-257 (336)
134 2ca6_A RAN GTPase-activating p 99.1 3.9E-11 1.3E-15 98.3 3.0 118 53-174 159-289 (386)
135 3sb4_A Hypothetical leucine ri 99.0 4.3E-10 1.5E-14 90.2 8.0 83 82-170 225-308 (329)
136 3sb4_A Hypothetical leucine ri 99.0 3.4E-10 1.2E-14 90.8 6.7 103 52-166 225-328 (329)
137 3rw6_A Nuclear RNA export fact 99.0 8.4E-10 2.9E-14 86.0 7.0 109 58-170 148-262 (267)
138 1z7x_W Ribonuclease inhibitor; 99.0 1.7E-10 5.8E-15 96.2 3.0 118 52-175 283-414 (461)
139 3un9_A NLR family member X1; l 99.0 2.3E-10 7.9E-15 93.5 3.5 160 14-175 74-255 (372)
140 1z7x_W Ribonuclease inhibitor; 98.9 8.6E-10 2.9E-14 91.9 6.3 122 50-173 110-241 (461)
141 3un9_A NLR family member X1; l 98.9 6E-10 2E-14 91.1 2.3 119 52-175 100-227 (372)
142 1io0_A Tropomodulin; LRR prote 98.6 6.6E-08 2.3E-12 71.2 5.4 123 51-175 34-167 (185)
143 4fdw_A Leucine rich hypothetic 98.6 8.2E-08 2.8E-12 79.2 6.3 153 15-182 229-393 (401)
144 3rw6_A Nuclear RNA export fact 98.5 5.2E-08 1.8E-12 75.8 2.7 81 52-138 169-257 (267)
145 4fdw_A Leucine rich hypothetic 98.4 3.1E-07 1.1E-11 75.7 6.7 142 15-172 206-358 (401)
146 3e4g_A ATP synthase subunit S, 98.4 3E-07 1E-11 66.9 4.9 83 54-143 62-150 (176)
147 3ogk_B Coronatine-insensitive 98.2 1.2E-06 4.1E-11 75.1 6.0 59 105-167 268-326 (592)
148 2p1m_B Transport inhibitor res 98.2 4.9E-07 1.7E-11 77.5 3.2 106 54-169 131-245 (594)
149 3ogk_B Coronatine-insensitive 98.2 4.2E-06 1.4E-10 71.7 8.6 107 50-167 217-350 (592)
150 2p1m_B Transport inhibitor res 98.2 3.8E-07 1.3E-11 78.2 1.7 117 51-172 395-519 (594)
151 3e4g_A ATP synthase subunit S, 98.2 7.4E-07 2.5E-11 64.9 2.7 84 83-170 61-150 (176)
152 1io0_A Tropomodulin; LRR prote 98.1 1.3E-06 4.4E-11 64.2 2.0 119 14-147 38-166 (185)
153 4h09_A Hypothetical leucine ri 97.9 4.2E-05 1.4E-09 62.1 8.1 106 50-168 237-342 (379)
154 4gt6_A Cell surface protein; l 97.8 6.9E-05 2.3E-09 61.2 8.5 107 50-170 262-368 (394)
155 2ra8_A Uncharacterized protein 97.7 1E-05 3.4E-10 65.7 1.8 94 81-174 217-322 (362)
156 3rfe_A Platelet glycoprotein I 97.7 0.0002 6.9E-09 49.3 7.8 61 86-150 11-73 (130)
157 4h09_A Hypothetical leucine ri 97.6 8.9E-05 3E-09 60.1 6.7 99 50-161 260-358 (379)
158 3rfe_A Platelet glycoprotein I 97.6 9.8E-05 3.4E-09 50.9 5.5 36 84-119 32-67 (130)
159 4fs7_A Uncharacterized protein 97.6 9.4E-05 3.2E-09 60.4 6.1 104 50-169 273-376 (394)
160 2ra8_A Uncharacterized protein 97.5 8E-05 2.7E-09 60.4 4.3 113 50-174 169-294 (362)
161 4gt6_A Cell surface protein; l 97.5 0.0005 1.7E-08 56.1 9.1 105 49-169 284-388 (394)
162 4fs7_A Uncharacterized protein 97.4 0.00015 5.2E-09 59.2 5.4 99 50-163 294-392 (394)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00046 1.6E-08 51.0 6.8 121 53-175 41-173 (197)
164 1pgv_A TMD-1, tropomodulin TMD 95.4 0.01 3.5E-07 43.7 3.3 93 77-169 35-136 (197)
165 2lz0_A Uncharacterized protein 83.8 1.6 5.3E-05 28.1 4.2 45 94-140 7-51 (100)
166 2lz0_A Uncharacterized protein 82.4 2.2 7.4E-05 27.4 4.5 50 62-118 5-54 (100)
No 1
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1e-18 Score=133.15 Aligned_cols=132 Identities=21% Similarity=0.212 Sum_probs=114.1
Q ss_pred CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN 93 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n 93 (210)
...|++++|+|+.++...+.++++ |+.|++++|+++.+.+ ..|..+++|+.|++++|
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l~~-----------------L~~L~Ls~N~i~~~~~------~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPYKK-----------------LRRIDLSNNQISELAP------DAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTT-----------------CCEEECCSSCCCEECT------TTTTTCSSCCEEECCSS
T ss_pred CCEEECCCCcCCCcCHhHhhCCCC-----------------CCEEECCCCcCCCcCH------HHhhCCcCCCEEECCCC
Confidence 445666666666666555554444 9999999999999976 88999999999999999
Q ss_pred CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
+++.+++..|..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.++.++. ..+..+++|+.|++++|+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAK---GTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECH---HHHhCCCCCCEEEeCCCCcC
Confidence 9999999888999999999999999999986 789999999999999999999876 46888999999999999864
No 2
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.78 E-value=2e-18 Score=127.02 Aligned_cols=143 Identities=22% Similarity=0.228 Sum_probs=124.5
Q ss_pred CCcceeCCCCCccccchhhhcccC-CcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECc
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLK-PNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLS 91 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~-~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls 91 (210)
....|++++|+++.++... .+. + |+.|++++|.++.++ .+..+++|+.|+++
T Consensus 20 ~L~~L~l~~n~l~~i~~~~--~~~~~-----------------L~~L~Ls~N~l~~~~--------~l~~l~~L~~L~Ls 72 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIENLG--ATLDQ-----------------FDAIDFSDNEIRKLD--------GFPLLRRLKTLLVN 72 (176)
T ss_dssp SCEEEECTTSCCCSCCCGG--GGTTC-----------------CSEEECCSSCCCEEC--------CCCCCSSCCEEECC
T ss_pred CceEEEeeCCCCchhHHhh--hcCCC-----------------CCEEECCCCCCCccc--------ccccCCCCCEEECC
Confidence 4567999999999886532 233 5 999999999999874 46778999999999
Q ss_pred CCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCH
Q psy4162 92 FNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILP 171 (210)
Q Consensus 92 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~ 171 (210)
+|+++.+++..+..+++|+.|++++|.+..++.+..+..+++|+.|++++|++..++.++...+..+++|+.||++.|..
T Consensus 73 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 73 NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp SSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999998876788999999999999999888545788999999999999999999987777899999999999999999
Q ss_pred HHHHHHHHHHH
Q psy4162 172 SEKQETNALNA 182 (210)
Q Consensus 172 ~~~~~~~~~~~ 182 (210)
.++..++.++.
T Consensus 153 ~~~~~~~~~~~ 163 (176)
T 1a9n_A 153 KERQEAEKMFK 163 (176)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHHh
Confidence 99887776655
No 3
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=3.4e-18 Score=130.29 Aligned_cols=113 Identities=26% Similarity=0.237 Sum_probs=103.0
Q ss_pred CCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccccc
Q psy4162 51 GRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR 130 (210)
Q Consensus 51 ~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 130 (210)
.+++|+.|++++|.++.+++ ..|..+++|+.|++++|+++.+++..|..+++|+.|++++|.++.+++ ..+..
T Consensus 55 ~l~~L~~L~L~~N~i~~i~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~ 127 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIEE------GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIG 127 (220)
T ss_dssp GCTTCCEEECCSSCCCEECT------TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTT
T ss_pred cCCCCCEEECCCCcCCEECH------HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCC
Confidence 45559999999999999987 789999999999999999999999889999999999999999999976 78899
Q ss_pred CCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162 131 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE 173 (210)
Q Consensus 131 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 173 (210)
+++|+.|++++|.++.+++ ..+..+++|+.|++++|+...
T Consensus 128 l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 128 LSSVRLLSLYDNQITTVAP---GAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CTTCSEEECTTSCCCCBCT---TTTTTCTTCCEEECCSCCEEC
T ss_pred CccCCEEECCCCcCCEECH---HHhcCCCCCCEEEecCcCCcC
Confidence 9999999999999999855 378899999999999998653
No 4
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=5.6e-18 Score=129.82 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=101.2
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 129 (210)
..+++|+.|++++|+++.++. ..|..+++|+.|++++|+++.+++..|..+++|+.|++++|.++.++ ..+.
T Consensus 61 ~~l~~L~~L~L~~N~l~~i~~------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~ 132 (229)
T 3e6j_A 61 DSLINLKELYLGSNQLGALPV------GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP--RGIE 132 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC--TTGG
T ss_pred hCccCCcEEECCCCCCCCcCh------hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC--cccc
Confidence 345559999999999999987 77899999999999999999999888899999999999999999887 5578
Q ss_pred cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
.+++|+.|++++|.+..++. ..+..+++|+.|++.+|+..
T Consensus 133 ~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 133 RLTHLTHLALDQNQLKSIPH---GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp GCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECTTSCBC
T ss_pred cCCCCCEEECCCCcCCccCH---HHHhCCCCCCEEEeeCCCcc
Confidence 99999999999999999876 46889999999999999865
No 5
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=4.7e-18 Score=146.90 Aligned_cols=135 Identities=19% Similarity=0.209 Sum_probs=118.3
Q ss_pred CCCCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEEC
Q psy4162 11 PEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDL 90 (210)
Q Consensus 11 ~~~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~L 90 (210)
|...+.||+++|+|+.+++..|.++++ |+.|+|++|+|+.+++ ..|.++++|++|+|
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~-----------------L~~L~Ls~N~i~~i~~------~~f~~L~~L~~L~L 107 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPE-----------------LQVLDLSRCEIQTIED------GAYQSLSHLSTLIL 107 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTT-----------------CCEEECTTCCCCEECT------TTTTTCTTCCEEEC
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCC-----------------CCEEECCCCcCCCcCh------hHhcCCCCCCEEEc
Confidence 456778999999999999888887777 9999999999999987 88999999999999
Q ss_pred cCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCc--cchHHHHHHhCcCcccccCCC
Q psy4162 91 SFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI--REYRAVVSTMIPQLVTLDSVF 168 (210)
Q Consensus 91 s~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~l~~L~~L~l~~ 168 (210)
++|+++.+++..|..+.+|+.|++++|.++.+++ ..++++++|+.|++++|.+..+ +. .+..+++|+.|++++
T Consensus 108 s~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~----~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 108 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSS 182 (635)
T ss_dssp TTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECCS
T ss_pred cCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCCh-hhhhcCcccCeeccccCccccCCCch----hhccchhhhhhcccC
Confidence 9999999998888999999999999999999886 7789999999999999999864 44 578899999999998
Q ss_pred CCHHH
Q psy4162 169 ILPSE 173 (210)
Q Consensus 169 ~~~~~ 173 (210)
|.+.+
T Consensus 183 N~l~~ 187 (635)
T 4g8a_A 183 NKIQS 187 (635)
T ss_dssp SCCCE
T ss_pred ccccc
Confidence 87543
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=8.6e-18 Score=130.33 Aligned_cols=152 Identities=18% Similarity=0.146 Sum_probs=127.6
Q ss_pred CCCcceeCCCCCccccchhhhcccCC-cccccCCC---CCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCC
Q psy4162 12 EFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGES---PPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDL 84 (210)
Q Consensus 12 ~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~---~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~ 84 (210)
.....|++++|+++.+.+..+.++++ ..+.+... ... +..+++|+.|++++|.++.+++ ..|..+++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~ 108 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL------GVFDHLTQ 108 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT------TTTTTCTT
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh------hHhcccCC
Confidence 35667999999999998877766555 12222222 222 2678999999999999999887 78899999
Q ss_pred CCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162 85 IGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL 164 (210)
Q Consensus 85 L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L 164 (210)
|+.|++++|+++.+++..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.++.++. ..+..+++|+.|
T Consensus 109 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L 184 (251)
T 3m19_A 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPH---GAFDRLGKLQTI 184 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEE
T ss_pred CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCH---HHHhCCCCCCEE
Confidence 9999999999999998878899999999999999999986 778999999999999999999876 468889999999
Q ss_pred cCCCCCHHH
Q psy4162 165 DSVFILPSE 173 (210)
Q Consensus 165 ~l~~~~~~~ 173 (210)
++++|+...
T Consensus 185 ~l~~N~~~c 193 (251)
T 3m19_A 185 TLFGNQFDC 193 (251)
T ss_dssp ECCSCCBCT
T ss_pred EeeCCceeC
Confidence 999998744
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=1.2e-17 Score=129.57 Aligned_cols=149 Identities=19% Similarity=0.174 Sum_probs=122.7
Q ss_pred cceeCCCCCccccchhhhcccCCccc-ccCCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEEC
Q psy4162 15 IPLDLSFQQIQSLDKVAVQKLKPNVH-RLGESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDL 90 (210)
Q Consensus 15 ~~L~ls~n~l~~l~~~~~~~l~~~~~-~~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~L 90 (210)
..++++++.++.++......+....+ ...+.... +..+++|+.|++++|.++.+++ ..|..+++|+.|++
T Consensus 17 ~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L 90 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA------GVFDDLTELGTLGL 90 (251)
T ss_dssp TEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT------TTTTTCTTCCEEEC
T ss_pred eEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH------hHhccCCcCCEEEC
Confidence 46999999999988754332221111 11222222 3778999999999999999887 78899999999999
Q ss_pred cCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCC
Q psy4162 91 SFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFIL 170 (210)
Q Consensus 91 s~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~ 170 (210)
++|+++.+++..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPA---GAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCCcCCccCH---HHcCcCcCCCEEECCCCc
Confidence 9999999998888999999999999999999886 778899999999999999999877 468899999999999997
Q ss_pred HHH
Q psy4162 171 PSE 173 (210)
Q Consensus 171 ~~~ 173 (210)
+..
T Consensus 167 l~~ 169 (251)
T 3m19_A 167 LQS 169 (251)
T ss_dssp CSC
T ss_pred CCc
Confidence 653
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=1.6e-17 Score=125.20 Aligned_cols=132 Identities=21% Similarity=0.271 Sum_probs=115.3
Q ss_pred CCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSF 92 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~ 92 (210)
....|++++|+++.++...+.++++ |+.|++++|+++.+++ ..|..+++|+.|++++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~-----------------L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTS-----------------LTQLYLGGNKLQSLPN------GVFNKLTSLTYLNLST 85 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTT-----------------CSEEECCSSCCCCCCT------TTTTTCTTCCEEECCS
T ss_pred CCcEEEcCCCccCcCChhhhccccc-----------------CcEEECCCCccCccCh------hhcCCCCCcCEEECCC
Confidence 4556888888887777766665566 9999999999999886 7788999999999999
Q ss_pred CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCH
Q psy4162 93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILP 171 (210)
Q Consensus 93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~ 171 (210)
|+++.+++..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.+++++. ..+..+++|+.|++++|+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPD---GVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSCCB
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCCccceeCH---HHhccCCCccEEEecCCCe
Confidence 99999998878899999999999999999885 678899999999999999998877 3578899999999999864
No 9
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=7.1e-17 Score=127.94 Aligned_cols=150 Identities=17% Similarity=0.016 Sum_probs=95.3
Q ss_pred CCCcceeCCCCCccccchhhhcccCC-cccccCCCCCC---------------------------CCCCCCccEEEccCC
Q psy4162 12 EFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM---------------------------LVGRYDTRSLWLSHN 63 (210)
Q Consensus 12 ~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~---------------------------~~~l~~L~~L~ls~n 63 (210)
.....|++++|.++.+.+..+.++++ ..+.+....+. ..++++|+.|++++|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCC
Confidence 35567888888888887766655444 11111111111 134445555555555
Q ss_pred ccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCC
Q psy4162 64 KISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNP 143 (210)
Q Consensus 64 ~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~ 143 (210)
+++.+++ ..|..+++|+.|++++|+++.+++..|..+++|+.|++++|+++.+++ ..+..+++|+.|++++|.
T Consensus 111 ~l~~l~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 111 RLTSLPL------GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENS 183 (290)
T ss_dssp CCCCCCS------STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred cCcccCH------HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH-HHhcCcCCCCEEECCCCc
Confidence 5555544 556666777777777777777766666667777777777777777664 556677777777777777
Q ss_pred CCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 144 IEKIREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 144 l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
++.++. .+..+++|+.|++.+|+..
T Consensus 184 l~~ip~----~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 184 LYTIPK----GFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCCT----TTTTTCCCSEEECCSCCBC
T ss_pred CCccCh----hhcccccCCeEEeCCCCcc
Confidence 777766 4556667777778777653
No 10
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=2.6e-17 Score=134.19 Aligned_cols=150 Identities=23% Similarity=0.222 Sum_probs=99.7
Q ss_pred CCcceeCCCCCccccchhhhc-ccCC-cccccCCCCC---C---CCCCCCccEEEccCCccccccCCchhhhhccCCCCC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQ-KLKP-NVHRLGESPP---M---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDL 84 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~-~l~~-~~~~~~~~~~---~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~ 84 (210)
....|++++|+|+.++...+. ++++ ..+.+.-..+ . +..+++|+.|+|++|+++.+++ ..|..+++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~ 113 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE------FLFSDLQA 113 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT------TTTTTCTT
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCH------HHhCCCcC
Confidence 455688888888887776554 4444 1111111111 1 2566777777777777777765 66777777
Q ss_pred CCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccc---ccCCCcCEEeeeCCCCCCccchHHHHHHhCcCc
Q psy4162 85 IGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL---RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQL 161 (210)
Q Consensus 85 L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L 161 (210)
|+.|+|++|+++.+.+..|..+++|+.|++++|.++.++. ..+ ..+++|+.|+|++|.++.++. ..+..++.+
T Consensus 114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~~ 189 (361)
T 2xot_A 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLPL---TDLQKLPAW 189 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCCH---HHHHHSCHH
T ss_pred CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccCH---HHhhhccHh
Confidence 7777777777777776667777777777777777777764 444 457777788888887777765 456667663
Q ss_pred --ccccCCCCCHH
Q psy4162 162 --VTLDSVFILPS 172 (210)
Q Consensus 162 --~~L~l~~~~~~ 172 (210)
+.|++.+|+..
T Consensus 190 ~l~~l~l~~N~~~ 202 (361)
T 2xot_A 190 VKNGLYLHNNPLE 202 (361)
T ss_dssp HHTTEECCSSCEE
T ss_pred hcceEEecCCCcc
Confidence 67777777754
No 11
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=3e-17 Score=119.65 Aligned_cols=137 Identities=21% Similarity=0.263 Sum_probs=116.7
Q ss_pred CCCCcceeCCCCCcc--ccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162 11 PEFKIPLDLSFQQIQ--SLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI 88 (210)
Q Consensus 11 ~~~~~~L~ls~n~l~--~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L 88 (210)
|.....|++++|+++ .++.. +..+++ |+.|++++|.++.+ ..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~-----------------L~~L~l~~n~l~~~--------~~~~~l~~L~~L 76 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-TAEFVN-----------------LEFLSLINVGLISV--------SNLPKLPKLKKL 76 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-CGGGGG-----------------CCEEEEESSCCCCC--------SSCCCCSSCCEE
T ss_pred cccCCEEECCCCCCChhhHHHH-HHhCCC-----------------CCEEeCcCCCCCCh--------hhhccCCCCCEE
Confidence 345677999999998 67654 455667 99999999999987 346778999999
Q ss_pred ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF 168 (210)
Q Consensus 89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~ 168 (210)
++++|+++...+..+..+++|+.|++++|.++.++....+..+++|+.|++++|+++.++.++...+..+++|+.|++.+
T Consensus 77 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp EEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred ECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 99999999966665777999999999999999986446788999999999999999999887777899999999999999
Q ss_pred CCHHH
Q psy4162 169 ILPSE 173 (210)
Q Consensus 169 ~~~~~ 173 (210)
|...+
T Consensus 157 n~~~~ 161 (168)
T 2ell_A 157 REDQE 161 (168)
T ss_dssp TTSCB
T ss_pred CChhh
Confidence 87644
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=5e-17 Score=127.34 Aligned_cols=151 Identities=21% Similarity=0.241 Sum_probs=121.7
Q ss_pred CCcceeCCCCCccccchhhhcccCC-cccccC---CCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLG---ESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI 85 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~---~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L 85 (210)
....|++++|+++.++...+.++++ ..+.+. +.... +..+++|+.|++++|.++.++. ..|..+++|
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L 111 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI------GVFDQLVNL 111 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT------TTTTTCSSC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH------hHcccccCC
Confidence 4567999999998888766665555 112221 22222 2668889999999999998886 778888999
Q ss_pred CEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccccc
Q psy4162 86 GWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165 (210)
Q Consensus 86 ~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~ 165 (210)
+.|++++|+++.+++..+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.+..++. ..+..+++|+.|+
T Consensus 112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRVPE---GAFDKLTELKTLK 187 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEE
T ss_pred CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcCcEeCh---hHhccCCCcCEEE
Confidence 999999999999988878899999999999999998885 678889999999999999998876 3578899999999
Q ss_pred CCCCCHHH
Q psy4162 166 SVFILPSE 173 (210)
Q Consensus 166 l~~~~~~~ 173 (210)
+++|.+..
T Consensus 188 L~~N~l~~ 195 (270)
T 2o6q_A 188 LDNNQLKR 195 (270)
T ss_dssp CCSSCCSC
T ss_pred CCCCcCCc
Confidence 99887643
No 13
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=5.1e-17 Score=121.35 Aligned_cols=128 Identities=25% Similarity=0.251 Sum_probs=111.0
Q ss_pred CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN 93 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n 93 (210)
...+++++|+++.++.... ++ ++.|++++|.++.++ ..|..+++|+.|++++|
T Consensus 12 ~~~l~~~~~~l~~ip~~~~---~~-----------------l~~L~L~~n~i~~ip-------~~~~~l~~L~~L~Ls~N 64 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP---RD-----------------VTELYLDGNQFTLVP-------KELSNYKHLTLIDLSNN 64 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC---TT-----------------CCEEECCSSCCCSCC-------GGGGGCTTCCEEECCSS
T ss_pred CCEEEcCCCCCCcCCCCCC---CC-----------------CCEEECCCCcCchhH-------HHhhcccCCCEEECCCC
Confidence 3568999999999886432 34 999999999999876 67888899999999999
Q ss_pred CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
+++.+++..|..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.++.++. ..+..+++|+.|++++|+..
T Consensus 65 ~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 65 RISTLSNQSFSNMTQLLTLILSYNRLRCIPP-RTFDGLKSLRLLSLHGNDISVVPE---GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEECCSSCEE
T ss_pred cCCEeCHhHccCCCCCCEEECCCCccCEeCH-HHhCCCCCCCEEECCCCCCCeeCh---hhhhcCccccEEEeCCCCee
Confidence 9999998889999999999999999999886 788999999999999999998877 46788999999999999764
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=9.6e-17 Score=125.69 Aligned_cols=148 Identities=19% Similarity=0.199 Sum_probs=125.1
Q ss_pred CcceeCCCCCccccchhhhcccCC-cccccC---CCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLG---ESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIG 86 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~---~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~ 86 (210)
...|++++|.++.++...+.++++ ..+.+. +.... +..+++|+.|++++|.++.+++ ..|..+++|+
T Consensus 63 L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~ 136 (270)
T 2o6q_A 63 LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP------RVFDSLTKLT 136 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT------TTTTTCTTCC
T ss_pred CCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH------HHhCcCcCCC
Confidence 456999999999988877665555 122222 22222 2778999999999999999987 7889999999
Q ss_pred EEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccC
Q psy4162 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDS 166 (210)
Q Consensus 87 ~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l 166 (210)
.|++++|+++.+++..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.++.++. ..+..+++|+.|++
T Consensus 137 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVPE---GAFDSLEKLKMLQL 212 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEEC
T ss_pred EEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcCCH---HHhccccCCCEEEe
Confidence 99999999999998888999999999999999999986 778899999999999999999887 46888999999999
Q ss_pred CCCCH
Q psy4162 167 VFILP 171 (210)
Q Consensus 167 ~~~~~ 171 (210)
++|+.
T Consensus 213 ~~N~~ 217 (270)
T 2o6q_A 213 QENPW 217 (270)
T ss_dssp CSSCB
T ss_pred cCCCe
Confidence 99985
No 15
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=9.4e-17 Score=125.93 Aligned_cols=147 Identities=17% Similarity=0.174 Sum_probs=119.9
Q ss_pred CCcceeCCCCCccccchhhhcccCC-ccccc---CCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRL---GESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI 85 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~---~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L 85 (210)
....|++++|.++.++.. ..+++ ..+.+ .+.... +..+++|+.|++++|+++.+++ ..|..+++|
T Consensus 64 ~L~~L~l~~n~l~~~~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L 135 (272)
T 3rfs_A 64 NVRYLALGGNKLHDISAL--KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD------GVFDKLTNL 135 (272)
T ss_dssp TCCEEECTTSCCCCCGGG--TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT------TTTTTCTTC
T ss_pred CCcEEECCCCCCCCchhh--cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH------HHhccCCCC
Confidence 345699999999887633 33333 11111 122222 2678899999999999999886 778899999
Q ss_pred CEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccccc
Q psy4162 86 GWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165 (210)
Q Consensus 86 ~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~ 165 (210)
+.|++++|+++.+++..+..+++|+.|++++|.++..++ ..+..+++|+.|++++|.+.+++. ..+..+++|+.|+
T Consensus 136 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVPD---GVFDRLTSLQYIW 211 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEE
T ss_pred CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccCH---HHHhCCcCCCEEE
Confidence 999999999999998878899999999999999999886 778899999999999999999877 4678999999999
Q ss_pred CCCCCH
Q psy4162 166 SVFILP 171 (210)
Q Consensus 166 l~~~~~ 171 (210)
+++|+.
T Consensus 212 l~~N~~ 217 (272)
T 3rfs_A 212 LHDNPW 217 (272)
T ss_dssp CCSSCB
T ss_pred ccCCCc
Confidence 999875
No 16
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=1.4e-16 Score=126.27 Aligned_cols=127 Identities=24% Similarity=0.210 Sum_probs=99.9
Q ss_pred CcceeCCCCCccccchhhhcccCC-cccccC---CCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLG---ESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIG 86 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~---~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~ 86 (210)
...|++++|+++.++.. +.++++ ..+.+. +.... +.++++|+.|++++|+++.+++ ..|..+++|+
T Consensus 79 L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~ 151 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP------GLLTPTPKLE 151 (290)
T ss_dssp CCEEECCSSCCSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT------TTTTTCTTCC
T ss_pred CCEEECCCCcCCcCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh------hhcccccCCC
Confidence 45578888888776652 222333 111122 22222 3788999999999999999987 7889999999
Q ss_pred EEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149 (210)
Q Consensus 87 ~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 149 (210)
.|++++|+++.+++..+..+++|+.|++++|+++.++ ..+...++|+.+++++|++.+...
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip--~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP--KGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCCCSEEECCSCCBCCSGG
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC--hhhcccccCCeEEeCCCCccCcCc
Confidence 9999999999999988889999999999999999988 445667899999999999987655
No 17
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=2e-16 Score=124.11 Aligned_cols=132 Identities=19% Similarity=0.198 Sum_probs=75.6
Q ss_pred CCCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECc
Q psy4162 12 EFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLS 91 (210)
Q Consensus 12 ~~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls 91 (210)
.....|++++|+++.++...+.++++ |+.|++++|.++.+++ ..|..+++|+.|+++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~-----------------L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPE-----------------LQVLDLSRCEIQTIED------GAYQSLSHLSTLILT 84 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTT-----------------CSEEECTTCCCCEECT------TTTTTCTTCCEEECT
T ss_pred CCccEEECCCCcccccCHhHhccccC-----------------CcEEECCCCcCCccCH------HHccCCcCCCEEECC
Confidence 35677999999999988877766666 5555555555555543 445555555555555
Q ss_pred CCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCC--ccchHHHHHHhCcCcccccCCCC
Q psy4162 92 FNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK--IREYRAVVSTMIPQLVTLDSVFI 169 (210)
Q Consensus 92 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~l~~L~~L~l~~~ 169 (210)
+|+++.+++..+..+++|+.|++++|.+...++ ..+..+++|+.|++++|.+.. ++. .+..+++|+.|++++|
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~l~~----~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSN 159 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECCSS
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCc-hhcccCCCCCEEECcCCccceecCch----hhccCCCCCEEECCCC
Confidence 555555554445555555555555555555443 334555555555555555554 232 3455555555555555
Q ss_pred CH
Q psy4162 170 LP 171 (210)
Q Consensus 170 ~~ 171 (210)
.+
T Consensus 160 ~l 161 (276)
T 2z62_A 160 KI 161 (276)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=2.1e-16 Score=124.56 Aligned_cols=151 Identities=21% Similarity=0.197 Sum_probs=124.7
Q ss_pred CCcceeCCCCC-ccccchhhhcccCC-cccccC---CCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCC
Q psy4162 13 FKIPLDLSFQQ-IQSLDKVAVQKLKP-NVHRLG---ESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDL 84 (210)
Q Consensus 13 ~~~~L~ls~n~-l~~l~~~~~~~l~~-~~~~~~---~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~ 84 (210)
....|++++|. ++.+++..+.++++ ..+.+. +.... +..+++|+.|++++|.++.++. ..|..+++
T Consensus 81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~ 154 (285)
T 1ozn_A 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD------DTFRDLGN 154 (285)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTT
T ss_pred CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH------hHhccCCC
Confidence 34669999997 88887766665554 112221 22221 2678899999999999999886 77889999
Q ss_pred CCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162 85 IGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL 164 (210)
Q Consensus 85 L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L 164 (210)
|+.|++++|+++.+++..+..+++|+.|++++|.++...+ ..+..+++|+.|++++|.+.+++. ..+..+++|+.|
T Consensus 155 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L 230 (285)
T 1ozn_A 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPT---EALAPLRALQYL 230 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCH---HHHTTCTTCCEE
T ss_pred ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcCCH---HHcccCcccCEE
Confidence 9999999999999998778899999999999999999865 778999999999999999999886 468999999999
Q ss_pred cCCCCCHHH
Q psy4162 165 DSVFILPSE 173 (210)
Q Consensus 165 ~l~~~~~~~ 173 (210)
++++|+...
T Consensus 231 ~l~~N~~~c 239 (285)
T 1ozn_A 231 RLNDNPWVC 239 (285)
T ss_dssp ECCSSCEEC
T ss_pred eccCCCccC
Confidence 999998753
No 19
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.1e-16 Score=119.45 Aligned_cols=129 Identities=18% Similarity=0.206 Sum_probs=106.7
Q ss_pred CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhh-ccCCCCCCCEEECcC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHR-TILDPDLIGWIDLSF 92 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~-~~~~l~~L~~L~Ls~ 92 (210)
...+++++|+++.++.... .. ++.|++++|.++.+++ . .|..+++|+.|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~---~~-----------------l~~L~l~~n~i~~~~~------~~~~~~l~~L~~L~Ls~ 63 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP---LH-----------------TTELLLNDNELGRISS------DGLFGRLPHLVKLELKR 63 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC---TT-----------------CSEEECCSCCCCSBCC------SCSGGGCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC---CC-----------------CCEEECCCCcCCccCC------ccccccCCCCCEEECCC
Confidence 3569999999999887432 24 8999999999988875 3 477888999999999
Q ss_pred CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
|+++.+.+..+..+++|+.|++++|.++.+++ ..+.++++|+.|++++|.++++.. ..+..+++|+.|++++|+..
T Consensus 64 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 64 NQLTGIEPNAFEGASHIQELQLGENKIKEISN-KMFLGLHQLKTLNLYDNQISCVMP---GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTCCEEECCSSCCCEECT---TSSTTCTTCCEEECTTCCBC
T ss_pred CCCCCcCHhHcCCcccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCeeCH---HHhhcCCCCCEEEeCCCCcc
Confidence 99999877778889999999999999988875 678888999999999999987754 36788889999999988764
No 20
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=2.7e-16 Score=115.58 Aligned_cols=129 Identities=18% Similarity=0.209 Sum_probs=112.9
Q ss_pred cceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC
Q psy4162 15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN 94 (210)
Q Consensus 15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~ 94 (210)
..++++.++++.++.... ++ |+.|++++|+++.+++ ..|..+++|+.|++++|+
T Consensus 10 ~~l~~~~~~l~~~p~~~~---~~-----------------l~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~ 63 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP---SS-----------------ATRLELESNKLQSLPH------GVFDKLTQLTKLSLSQNQ 63 (177)
T ss_dssp TEEECCSSCCSSCCTTCC---TT-----------------CSEEECCSSCCCCCCT------TTTTTCTTCSEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC---CC-----------------CcEEEeCCCcccEeCH------HHhcCcccccEEECCCCc
Confidence 458899999988875432 35 9999999999999886 778889999999999999
Q ss_pred CCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162 95 IKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE 173 (210)
Q Consensus 95 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 173 (210)
++.+++..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.++.++. ..+..+++|+.|++++|+...
T Consensus 64 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 64 IQSLPDGVFDKLTKLTILYLHENKLQSLPN-GVFDKLTQLKELALDTNQLKSVPD---GIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCBCC
T ss_pred ceEeChhHccCCCccCEEECCCCCccccCH-HHhhCCcccCEEECcCCcceEeCH---HHhcCCcccCEEEecCCCeec
Confidence 999998878899999999999999999885 678899999999999999999887 357889999999999998654
No 21
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=1.4e-16 Score=121.24 Aligned_cols=130 Identities=20% Similarity=0.156 Sum_probs=115.4
Q ss_pred CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN 93 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n 93 (210)
...++++.++++.+|.... ++ ++.|++++|.|+.+++ ..|..+++|+.|++++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~---~~-----------------l~~L~l~~n~i~~i~~------~~~~~l~~L~~L~Ls~N 66 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP---ET-----------------ITEIRLEQNTIKVIPP------GAFSPYKKLRRIDLSNN 66 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC---TT-----------------CCEEECCSSCCCEECT------TSSTTCTTCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC---cC-----------------CCEEECCCCcCCCcCH------hHhhCCCCCCEEECCCC
Confidence 3568999999999887432 34 9999999999999987 78999999999999999
Q ss_pred CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162 94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE 173 (210)
Q Consensus 94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 173 (210)
+++.+.+..|..+++|+.|++++|.++.+++ ..+.++++|+.|++++|.+..++. ..+..+++|+.|++++|.+..
T Consensus 67 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 67 QISELAPDAFQGLRSLNSLVLYGNKITELPK-SLFEGLFSLQLLLLNANKINCLRV---DAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp CCCEECTTTTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCcCHHHhhCCcCCCEEECCCCcCCccCH-hHccCCCCCCEEECCCCCCCEeCH---HHcCCCCCCCEEECCCCcCCE
Confidence 9999988889999999999999999999986 778999999999999999999866 378899999999999997643
No 22
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=2.8e-16 Score=120.27 Aligned_cols=130 Identities=17% Similarity=0.133 Sum_probs=116.0
Q ss_pred CCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSF 92 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~ 92 (210)
....++++.++++.++.... ++ |+.|++++|.++.+++ ..|..+++|+.|++++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~---~~-----------------L~~L~Ls~n~i~~~~~------~~~~~l~~L~~L~L~~ 73 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP---TN-----------------AQILYLHDNQITKLEP------GVFDSLINLKELYLGS 73 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC---TT-----------------CSEEECCSSCCCCCCT------TTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC---CC-----------------CCEEEcCCCccCccCH------HHhhCccCCcEEECCC
Confidence 34559999999999887432 44 9999999999999977 8899999999999999
Q ss_pred CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
|+++.+++..|..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus 74 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 74 NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNKLTELPR----GIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCSCCT----TGGGCTTCSEEECCSSCCC
T ss_pred CCCCCcChhhcccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCcccccCc----ccccCCCCCEEECCCCcCC
Confidence 99999998888999999999999999999986 778999999999999999999987 6799999999999999765
Q ss_pred H
Q psy4162 173 E 173 (210)
Q Consensus 173 ~ 173 (210)
.
T Consensus 149 ~ 149 (229)
T 3e6j_A 149 S 149 (229)
T ss_dssp C
T ss_pred c
Confidence 3
No 23
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=2.1e-16 Score=112.85 Aligned_cols=129 Identities=20% Similarity=0.293 Sum_probs=105.4
Q ss_pred CCcceeCCCCCcc--ccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEEC
Q psy4162 13 FKIPLDLSFQQIQ--SLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDL 90 (210)
Q Consensus 13 ~~~~L~ls~n~l~--~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~L 90 (210)
....|++++|+++ .++. .+..+++ |+.|++++|.++.+ ..+..+++|+.|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~-~~~~l~~-----------------L~~L~l~~n~l~~~--------~~~~~l~~L~~L~L 71 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEG-LTDEFEE-----------------LEFLSTINVGLTSI--------ANLPKLNKLKKLEL 71 (149)
T ss_dssp GCSEEECTTCBCBTTBCCS-CCTTCTT-----------------CCEEECTTSCCCCC--------TTCCCCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHH-HHhhcCC-----------------CcEEECcCCCCCCc--------hhhhcCCCCCEEEC
Confidence 4566999999988 5554 3444555 99999999999887 34667789999999
Q ss_pred cCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCC
Q psy4162 91 SFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV 167 (210)
Q Consensus 91 s~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~ 167 (210)
++|+++...+..+..+++|+.|++++|.+++++....+..+++|+.|++++|++++.+.++...+..+++|+.||++
T Consensus 72 s~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999986555567789999999999999987533668889999999999999998888766789999999999886
No 24
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=4.4e-16 Score=126.93 Aligned_cols=116 Identities=22% Similarity=0.300 Sum_probs=99.1
Q ss_pred CCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccccc
Q psy4162 51 GRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR 130 (210)
Q Consensus 51 ~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 130 (210)
++.+|+.|++++|+|+.+++ ..|..+++|+.|+|++|+++.+++..|..+++|+.|++++|.++.+.+ ..+.+
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~ 134 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISS------EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR-NAFED 134 (361)
T ss_dssp CCTTCCEEECCSSCCCEECT------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTT
T ss_pred cccccCEEECCCCcCCccCh------hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH-HHhCC
Confidence 88899999999999999987 789999999999999999999988888999999999999999998875 78899
Q ss_pred CCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162 131 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE 173 (210)
Q Consensus 131 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 173 (210)
+++|+.|+|++|.++.++......+..+++|+.|++++|.+..
T Consensus 135 l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 9999999999999999877211112678999999999987643
No 25
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=5.5e-16 Score=121.53 Aligned_cols=148 Identities=19% Similarity=0.156 Sum_probs=122.3
Q ss_pred CcceeCCCCCccccchhhhcccCC-cccccCCC---CCC-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGES---PPM-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI 88 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~---~~~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L 88 (210)
...|++++|.++.++... .+++ ..+.+.-. ... ...+++|+.|++++|.++.+++ ..|..+++|+.|
T Consensus 43 L~~L~l~~~~i~~~~~l~--~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L 114 (272)
T 3rfs_A 43 IDQIIANNSDIKSVQGIQ--YLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPN------GVFDKLTNLKEL 114 (272)
T ss_dssp CCEEECTTSCCCCCTTGG--GCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCT------TTTTTCTTCCEE
T ss_pred eeeeeeCCCCcccccccc--cCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccCh------hHhcCCcCCCEE
Confidence 456999999999887643 3344 11222222 222 3789999999999999999886 778999999999
Q ss_pred ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF 168 (210)
Q Consensus 89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~ 168 (210)
++++|+++.+++..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.+++++. ..+..+++|+.|++++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLPE---GVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH-HHhccCccCCEEECCCCCcCccCH---HHhcCCccCCEEECCC
Confidence 999999999998878999999999999999999886 778899999999999999998876 3578899999999999
Q ss_pred CCHHH
Q psy4162 169 ILPSE 173 (210)
Q Consensus 169 ~~~~~ 173 (210)
|.+..
T Consensus 191 N~l~~ 195 (272)
T 3rfs_A 191 NQLKS 195 (272)
T ss_dssp SCCSC
T ss_pred CcCCc
Confidence 97654
No 26
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=6.2e-16 Score=121.82 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=118.2
Q ss_pred CCCcceeCCCCCccccchhhhcccCC-cccccCCCCCC------CCCCCCccEEEccCCc-cccccCCchhhhhccCCCC
Q psy4162 12 EFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM------LVGRYDTRSLWLSHNK-ISLVYGLDSLVHRTILDPD 83 (210)
Q Consensus 12 ~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~------~~~l~~L~~L~ls~n~-l~~~~~l~~~~~~~~~~l~ 83 (210)
.....|++++|.++.++...+.++++ ..+.+....+. +..+++|+.|++++|. ++.+++ ..+..++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~------~~~~~l~ 105 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP------ATFHGLG 105 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT------TTTTTCT
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH------HHhcCCc
Confidence 35667999999999988776665555 11222211111 2678889999999987 888765 7788888
Q ss_pred CCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccc
Q psy4162 84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVT 163 (210)
Q Consensus 84 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~ 163 (210)
+|+.|++++|+++.+.+..+..+++|+.|++++|.++..++ ..+..+++|+.|++++|.++.++. ..+..+++|+.
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~ 181 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPE---RAFRGLHSLDR 181 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCE
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH-hHhccCCCccEEECCCCcccccCH---HHhcCccccCE
Confidence 99999999999988877778888999999999999988875 668888999999999999988776 35788899999
Q ss_pred ccCCCCCHHH
Q psy4162 164 LDSVFILPSE 173 (210)
Q Consensus 164 L~l~~~~~~~ 173 (210)
|++++|.+.+
T Consensus 182 L~l~~n~l~~ 191 (285)
T 1ozn_A 182 LLLHQNRVAH 191 (285)
T ss_dssp EECCSSCCCE
T ss_pred EECCCCcccc
Confidence 9999887643
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.65 E-value=2.9e-16 Score=135.71 Aligned_cols=128 Identities=17% Similarity=0.177 Sum_probs=114.1
Q ss_pred cceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC
Q psy4162 15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN 94 (210)
Q Consensus 15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~ 94 (210)
.+++.++.+++.+|.. +|. +++.|+|++|+|+.+++ ..|..+++|+.|+|++|+
T Consensus 34 ~~~~c~~~~l~~vP~~----lp~----------------~~~~LdLs~N~i~~l~~------~~f~~l~~L~~L~Ls~N~ 87 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDN----LPF----------------STKNLDLSFNPLRHLGS------YSFFSFPELQVLDLSRCE 87 (635)
T ss_dssp TEEECTTSCCSSCCSS----SCT----------------TCCEEECTTSCCCEECT------TTTTTCTTCCEEECTTCC
T ss_pred CEEECCCCCcCccCCC----CCc----------------CCCEEEeeCCCCCCCCH------HHHhCCCCCCEEECCCCc
Confidence 3477788888887762 333 49999999999999997 889999999999999999
Q ss_pred CCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 95 IKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 95 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
|+.+++..|..+++|+.|+|++|+++.+++ ..|.++++|+.|++++|.++.++. ..++.+++|+.|++++|.+.
T Consensus 88 i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~-~~f~~L~~L~~L~Ls~N~l~~l~~---~~~~~L~~L~~L~Ls~N~l~ 161 (635)
T 4g8a_A 88 IQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQ 161 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECG-GGGTTCTTCCEEECTTSCCCCSTT---CCCTTCTTCCEEECCSSCCC
T ss_pred CCCcChhHhcCCCCCCEEEccCCcCCCCCH-HHhcCCCCCCEEECCCCcCCCCCh---hhhhcCcccCeeccccCccc
Confidence 999999889999999999999999999986 889999999999999999999876 36899999999999998764
No 28
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=1.6e-15 Score=113.22 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=103.4
Q ss_pred CCCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECc
Q psy4162 12 EFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLS 91 (210)
Q Consensus 12 ~~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls 91 (210)
.....|++++|.|+.++ ..+.++++ |+.|++++|.|+.+++ ..|..+++|+.|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip-~~~~~l~~-----------------L~~L~Ls~N~i~~i~~------~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-KELSNYKH-----------------LTLIDLSNNRISTLSN------QSFSNMTQLLTLILS 86 (193)
T ss_dssp TTCCEEECCSSCCCSCC-GGGGGCTT-----------------CCEEECCSSCCCCCCT------TTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhH-HHhhcccC-----------------CCEEECCCCcCCEeCH------hHccCCCCCCEEECC
Confidence 35677999999999988 46666777 9999999999999987 889999999999999
Q ss_pred CCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccch
Q psy4162 92 FNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY 150 (210)
Q Consensus 92 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 150 (210)
+|+++.+++..|..+++|+.|++++|.++.+++ ..+..+++|+.|++++|++.+....
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeecCCcC
Confidence 999999999889999999999999999999986 7789999999999999999987653
No 29
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.64 E-value=4.8e-16 Score=118.32 Aligned_cols=131 Identities=18% Similarity=0.196 Sum_probs=114.0
Q ss_pred CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN 93 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n 93 (210)
...+++++|.++.+|... . .. ++.|++++|.++.+++- ..|..+++|+.|++++|
T Consensus 13 ~~~l~~s~n~l~~iP~~~-~--~~-----------------~~~L~L~~N~l~~~~~~-----~~~~~l~~L~~L~L~~N 67 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI-P--QY-----------------TAELRLNNNEFTVLEAT-----GIFKKLPQLRKINFSNN 67 (220)
T ss_dssp TTEEECCSSCCSSCCSCC-C--TT-----------------CSEEECCSSCCCEECCC-----CCGGGCTTCCEEECCSS
T ss_pred CCEeEeCCCCcccCccCC-C--CC-----------------CCEEEcCCCcCCccCch-----hhhccCCCCCEEECCCC
Confidence 357999999999988632 2 34 89999999999998531 45788899999999999
Q ss_pred CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162 94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE 173 (210)
Q Consensus 94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 173 (210)
+++.+++..|..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.+..+++ ..+..+++|+.|++++|.+..
T Consensus 68 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~ 143 (220)
T 2v70_A 68 KITDIEEGAFEGASGVNEILLTSNRLENVQH-KMFKGLESLKTLMLRSNRITCVGN---DSFIGLSSVRLLSLYDNQITT 143 (220)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCCCG-GGGTTCSSCCEEECTTSCCCCBCT---TSSTTCTTCSEEECTTSCCCC
T ss_pred cCCEECHHHhCCCCCCCEEECCCCccCccCH-hHhcCCcCCCEEECCCCcCCeECH---hHcCCCccCCEEECCCCcCCE
Confidence 9999998889999999999999999999986 789999999999999999999865 368899999999999997654
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.64 E-value=7e-16 Score=128.86 Aligned_cols=134 Identities=20% Similarity=0.183 Sum_probs=116.0
Q ss_pred CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN 93 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n 93 (210)
...+++++|.++.+.+..+..+++ |+.|++++|.++.+++ ..|..+++|+.|++++|
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~-----------------L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTD-----------------LEQLTLAQNEINKIDD------NAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTT-----------------CCEEECTTSCCCEECT------TTTTTCTTCCEEECCSS
T ss_pred ceEEEecCccccccchhhcccCCC-----------------CCEEECCCCcccccCh------hHhcCcccCCEEECCCC
Confidence 445777777777766666655555 9999999999999876 78999999999999999
Q ss_pred CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162 94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE 173 (210)
Q Consensus 94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 173 (210)
+++.+.+..+..+++|+.|++++|.++...+ ..+.++++|+.|++++|.++.++. ..+..+++|+.|++++|+...
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQLKSVPD---GIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCcChhHhcCcccCCEEECCCCcccccCh-hhccccccccEEECCCCccccCCH---hHhccCCcccEEEccCCCccc
Confidence 9999988889999999999999999999875 788999999999999999999887 467899999999999998754
Q ss_pred H
Q psy4162 174 K 174 (210)
Q Consensus 174 ~ 174 (210)
.
T Consensus 410 ~ 410 (455)
T 3v47_A 410 S 410 (455)
T ss_dssp C
T ss_pred C
Confidence 3
No 31
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=1.7e-15 Score=113.24 Aligned_cols=144 Identities=12% Similarity=0.101 Sum_probs=98.0
Q ss_pred CcceeCCCCCccccchhhhcccCC---cccccC-CCCCC-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP---NVHRLG-ESPPM-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI 88 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~---~~~~~~-~~~~~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L 88 (210)
...|++++|.++.++. +..+++ ..+..+ +.... ...+++|+.|++++|.++.... ..+..+++|+.|
T Consensus 46 L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~------~~l~~l~~L~~L 117 (197)
T 4ezg_A 46 LTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKI------PNLSGLTSLTLL 117 (197)
T ss_dssp CCEEEEESSCCSCCTT--GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGS------CCCTTCTTCCEE
T ss_pred ccEEeccCCCccChHH--HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccC------hhhcCCCCCCEE
Confidence 4569999999998874 333444 111111 11112 2667778888888888876443 567777888888
Q ss_pred ECcCCCCCcCCcccccCCCCccEEEccCCc-cCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCC
Q psy4162 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQ-IEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV 167 (210)
Q Consensus 89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~ 167 (210)
++++|+++...+..+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.+++++. +..+++|+.|++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~~-----l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYRG-----IEDFPKLNQLYAF 189 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCTT-----GGGCSSCCEEEEC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChHH-----hccCCCCCEEEee
Confidence 888888877555557778888888888887 66664 26777888888888888887654 6778888888888
Q ss_pred CCCHHH
Q psy4162 168 FILPSE 173 (210)
Q Consensus 168 ~~~~~~ 173 (210)
+|++..
T Consensus 190 ~N~i~~ 195 (197)
T 4ezg_A 190 SQTIGG 195 (197)
T ss_dssp BC----
T ss_pred CcccCC
Confidence 887543
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.63 E-value=2.1e-15 Score=130.29 Aligned_cols=131 Identities=18% Similarity=0.225 Sum_probs=87.1
Q ss_pred CCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSF 92 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~ 92 (210)
....|++++|+++.+++..+.++++ |+.|++++|.++.+++ ..|..+++|+.|++++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~-----------------L~~L~Ls~n~l~~i~~------~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSE-----------------LQWLDLSRCEIETIED------KAWHGLHHLSNLILTG 89 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTT-----------------CCEEECTTCCCCEECT------TTTTTCTTCCEEECTT
T ss_pred CcCEEECCCCCcCEeChhhccCCcc-----------------CcEEeCCCCcccccCH------HHhhchhhcCEeECCC
Confidence 3455666666666666655555555 7777777777776655 6666677777777777
Q ss_pred CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCC--ccchHHHHHHhCcCcccccCCCCC
Q psy4162 93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK--IREYRAVVSTMIPQLVTLDSVFIL 170 (210)
Q Consensus 93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~l~~L~~L~l~~~~ 170 (210)
|+++.+.+..+..+++|+.|++++|.++..++ ..++++++|+.|++++|.+.. +|. .+..+++|+.|++++|.
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~lp~----~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHSCKLPA----YFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS-SCCTTCTTCCEEECCSSCCCCCCCCG----GGGTCTTCCEEECCSSC
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccc-cccCCCCCCCEEeCCCCcccceechH----hHhhcCCCCEEEccCCc
Confidence 77777665556677777777777777766664 456667777777777777664 344 56667777777776665
Q ss_pred H
Q psy4162 171 P 171 (210)
Q Consensus 171 ~ 171 (210)
+
T Consensus 165 l 165 (606)
T 3vq2_A 165 I 165 (606)
T ss_dssp C
T ss_pred c
Confidence 4
No 33
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.63 E-value=1e-15 Score=128.11 Aligned_cols=149 Identities=19% Similarity=0.128 Sum_probs=106.2
Q ss_pred CCcceeCCCCCccccchhhhcccCC-cccccCCCCCC------CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM------LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI 85 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~------~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L 85 (210)
....|++++|+|+.+.+..|.++++ ..+.+....+. +.++++|+.|++++|.++.++. ..|..+++|
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L 149 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS------GAFEYLSKL 149 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT------TTSSSCTTC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh------hhhcccCCC
Confidence 4566888888888887777766655 11222211111 2567777777777777777765 667777777
Q ss_pred CEEECcCCCCCcCCcccccCCCCccEEEccC-CccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162 86 GWIDLSFNNIKNVDKNMFTNFPNLKILYLHK-NQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL 164 (210)
Q Consensus 86 ~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L 164 (210)
+.|++++|+++.+++..+..+++|+.|++++ |.+..++. ..+.++++|+.|++++|.++.++. +..+++|+.|
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L 223 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCNIKDMPN-----LTPLVGLEEL 223 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSCCSSCCC-----CTTCTTCCEE
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCccccccc-----ccccccccEE
Confidence 7777777777777776677777777777777 45555553 567788888888888888888865 6778888889
Q ss_pred cCCCCCHHH
Q psy4162 165 DSVFILPSE 173 (210)
Q Consensus 165 ~l~~~~~~~ 173 (210)
++++|.+.+
T Consensus 224 ~Ls~N~l~~ 232 (452)
T 3zyi_A 224 EMSGNHFPE 232 (452)
T ss_dssp ECTTSCCSE
T ss_pred ECcCCcCcc
Confidence 988887644
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.62 E-value=8.1e-16 Score=129.39 Aligned_cols=152 Identities=20% Similarity=0.193 Sum_probs=119.6
Q ss_pred CCCcceeCCCCCccccchhhhcccCC-cccccCCC---CCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCC
Q psy4162 12 EFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGES---PPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDL 84 (210)
Q Consensus 12 ~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~---~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~ 84 (210)
.....|++++|+++.+++..+.++++ ..+.+.-. ... +.++++|+.|++++|.++.++. ..|..+++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL------GVFTGLSN 105 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT------TSSTTCTT
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCc------ccccCCCC
Confidence 35677999999999998877776665 11222221 111 3778888999998888888876 67888888
Q ss_pred CCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162 85 IGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL 164 (210)
Q Consensus 85 L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L 164 (210)
|+.|++++|++..+.+..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+..++. ..+..+++|+.|
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L 181 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPT---EALSHLHGLIVL 181 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCH---HHHTTCTTCCEE
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccCh---hHhcccCCCcEE
Confidence 9999999998888877778888899999999998888775 678888999999999999988876 468889999999
Q ss_pred cCCCCCHHH
Q psy4162 165 DSVFILPSE 173 (210)
Q Consensus 165 ~l~~~~~~~ 173 (210)
++++|.+..
T Consensus 182 ~l~~n~i~~ 190 (477)
T 2id5_A 182 RLRHLNINA 190 (477)
T ss_dssp EEESCCCCE
T ss_pred eCCCCcCcE
Confidence 998886543
No 35
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.62 E-value=2.5e-15 Score=109.91 Aligned_cols=109 Identities=20% Similarity=0.230 Sum_probs=96.6
Q ss_pred CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN 93 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n 93 (210)
...+++++|+++.++.... .. |+.|++++|.|+.+++ ..|..+++|+.|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~---~~-----------------l~~L~L~~N~i~~~~~------~~~~~l~~L~~L~Ls~N 64 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP---TT-----------------TQVLYLYDNQITKLEP------GVFDRLTQLTRLDLDNN 64 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC---TT-----------------CSEEECCSSCCCCCCT------TTTTTCTTCSEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC---CC-----------------CcEEEcCCCcCCccCh------hhhcCcccCCEEECCCC
Confidence 3569999999999886432 44 9999999999999987 88999999999999999
Q ss_pred CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162 94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149 (210)
Q Consensus 94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 149 (210)
+++.+++..|..+++|+.|++++|.++.+++ ..+..+++|+.|++++|++.+.+.
T Consensus 65 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 65 QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CcCccChhhccCCCCCCEEECCCCccCEeCH-HHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999999888999999999999999999986 778999999999999999997764
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.62 E-value=2.4e-15 Score=128.79 Aligned_cols=132 Identities=19% Similarity=0.198 Sum_probs=89.6
Q ss_pred CCCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECc
Q psy4162 12 EFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLS 91 (210)
Q Consensus 12 ~~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls 91 (210)
.....|++++|+++.++...+.++++ |+.|++++|.++.+++ ..|..+++|++|+++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~-----------------L~~L~Ls~n~i~~i~~------~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPE-----------------LQVLDLSRCEIQTIED------GAYQSLSHLSTLILT 84 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSS-----------------CCEEECTTCCCCEECT------TTTTTCTTCCEEECT
T ss_pred ccccEEEccCCccCccChhHhhCCCC-----------------ceEEECCCCcCCccCc------ccccCchhCCEEeCc
Confidence 35567999999998888877776666 7777777777666655 566666677777777
Q ss_pred CCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCC--ccchHHHHHHhCcCcccccCCCC
Q psy4162 92 FNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK--IREYRAVVSTMIPQLVTLDSVFI 169 (210)
Q Consensus 92 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~l~~L~~L~l~~~ 169 (210)
+|+++.+++..+..+++|+.|++++|.++.+++ ..++.+++|++|++++|.+.. +|. .+..+++|+.|++++|
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~----~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSN 159 (570)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECTTS
T ss_pred CCcCCccCHhhhcCccccccccccccccccCCC-ccccccccccEEecCCCccceecChh----hhcccCCCCEEeCcCC
Confidence 776666665556666677777777776666654 446666667777777766664 343 4666666666666666
Q ss_pred CH
Q psy4162 170 LP 171 (210)
Q Consensus 170 ~~ 171 (210)
.+
T Consensus 160 ~l 161 (570)
T 2z63_A 160 KI 161 (570)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=126.70 Aligned_cols=149 Identities=19% Similarity=0.159 Sum_probs=106.4
Q ss_pred CCcceeCCCCCccccchhhhcccCC-cccccCCCCCC------CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM------LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI 85 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~------~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L 85 (210)
....|++++|+++.++...+.++++ ..+.+.-..+. +.++++|+.|++++|+++.++. ..|..+++|
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L 138 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN------GAFVYLSKL 138 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT------TTSCSCSSC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH------hHhhccccC
Confidence 4566888888888888777766655 11222222111 2667777777777777777765 667777778
Q ss_pred CEEECcCCCCCcCCcccccCCCCccEEEccCC-ccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162 86 GWIDLSFNNIKNVDKNMFTNFPNLKILYLHKN-QIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL 164 (210)
Q Consensus 86 ~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L 164 (210)
+.|++++|+++.+++..|..+++|+.|++++| .+..+++ ..+.++++|+.|++++|.++.++. +..+++|+.|
T Consensus 139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L 212 (440)
T 3zyj_A 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREIPN-----LTPLIKLDEL 212 (440)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCCSSCCC-----CTTCSSCCEE
T ss_pred ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCCcCccccc-----cCCCcccCEE
Confidence 88888888777777766777778888888773 4555554 567788888888888888888876 6778888888
Q ss_pred cCCCCCHHH
Q psy4162 165 DSVFILPSE 173 (210)
Q Consensus 165 ~l~~~~~~~ 173 (210)
++++|.+.+
T Consensus 213 ~Ls~N~l~~ 221 (440)
T 3zyj_A 213 DLSGNHLSA 221 (440)
T ss_dssp ECTTSCCCE
T ss_pred ECCCCccCc
Confidence 888887643
No 38
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=2.1e-15 Score=113.50 Aligned_cols=129 Identities=18% Similarity=0.169 Sum_probs=112.1
Q ss_pred cceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC
Q psy4162 15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN 94 (210)
Q Consensus 15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~ 94 (210)
..++++.+.++.++.... ++ ++.|++++|.++.++. ..|..+++|+.|++++|+
T Consensus 10 ~~v~c~~~~l~~~p~~~~---~~-----------------l~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~ 63 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIP---AQ-----------------TTYLDLETNSLKSLPN------GVFDELTSLTQLYLGGNK 63 (208)
T ss_dssp TEEECCSSCCSSCCSCCC---TT-----------------CSEEECCSSCCCCCCT------TTTTTCTTCSEEECCSSC
T ss_pred CEEEecCCCccCCCCCCC---CC-----------------CcEEEcCCCccCcCCh------hhhcccccCcEEECCCCc
Confidence 457788888877775432 34 9999999999999886 778899999999999999
Q ss_pred CCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162 95 IKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE 173 (210)
Q Consensus 95 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 173 (210)
++.+++..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.+..++. ..+..+++|+.|++++|.+.+
T Consensus 64 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 64 LQSLPNGVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQLKELALNTNQLQSLPD---GVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCSC
T ss_pred cCccChhhcCCCCCcCEEECCCCcCCccCH-hHhcCccCCCEEEcCCCcCcccCH---hHhccCCcCCEEECCCCccce
Confidence 999998878899999999999999999885 678899999999999999999877 357889999999999997653
No 39
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=3.8e-15 Score=110.98 Aligned_cols=113 Identities=24% Similarity=0.258 Sum_probs=102.8
Q ss_pred CCcceeCCCCCccccchh-hhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECc
Q psy4162 13 FKIPLDLSFQQIQSLDKV-AVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLS 91 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~-~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls 91 (210)
....|++++|+++.+++. .+.++++ |+.|++++|.++.+.+ ..|..+++|+.|+++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~-----------------L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPH-----------------LVKLELKRNQLTGIEP------NAFEGASHIQELQLG 86 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTT-----------------CCEEECCSSCCCCBCT------TTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCCccccccCCC-----------------CCEEECCCCCCCCcCH------hHcCCcccCCEEECC
Confidence 567799999999999875 4666777 9999999999999976 889999999999999
Q ss_pred CCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162 92 FNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149 (210)
Q Consensus 92 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 149 (210)
+|+++.+++..+..+++|+.|++++|+++...+ ..+..+++|+.|++++|++.+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCcCc
Confidence 999999999889999999999999999999876 788999999999999999998765
No 40
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=5.5e-15 Score=108.51 Aligned_cols=113 Identities=24% Similarity=0.265 Sum_probs=102.4
Q ss_pred CCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSF 92 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~ 92 (210)
....|++++|+++.++...+.++++ |+.|++++|.++.+++ ..|..+++|+.|++++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~-----------------L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQ-----------------LTKLSLSQNQIQSLPD------GVFDKLTKLTILYLHE 85 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTT-----------------CSEEECCSSCCCCCCT------TTTTTCTTCCEEECCS
T ss_pred CCcEEEeCCCcccEeCHHHhcCccc-----------------ccEEECCCCcceEeCh------hHccCCCccCEEECCC
Confidence 5677999999999998877776777 9999999999999886 7788999999999999
Q ss_pred CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162 93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149 (210)
Q Consensus 93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 149 (210)
|+++.+++..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|++.+..+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeeccCc
Confidence 99999998878899999999999999999886 677889999999999999998754
No 41
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=7.3e-16 Score=118.47 Aligned_cols=146 Identities=12% Similarity=0.108 Sum_probs=84.1
Q ss_pred CCCCcceeCCCCCccccchhhhcccCC-cccccC----CCCCC---CCCCCCccEEEccC-CccccccCCchhhhhccCC
Q psy4162 11 PEFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLG----ESPPM---LVGRYDTRSLWLSH-NKISLVYGLDSLVHRTILD 81 (210)
Q Consensus 11 ~~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~----~~~~~---~~~l~~L~~L~ls~-n~l~~~~~l~~~~~~~~~~ 81 (210)
|.....|++++|+++.++...+.++++ ..+.+. +.... +.++++|+.|++++ |.++.+++ ..|..
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~------~~f~~ 103 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP------DALKE 103 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT------TSEEC
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH------HHhCC
Confidence 345677999999999999877766666 111111 11111 14555566666665 66665554 45555
Q ss_pred CCCCCEEECcCCCCCcCCcccccCCCCcc---EEEccCC-ccCccccccccccCCCcC-EEeeeCCCCCCccchHHHHHH
Q psy4162 82 PDLIGWIDLSFNNIKNVDKNMFTNFPNLK---ILYLHKN-QIEEYLSVFVLRRVNSLR-TLSLYGNPIEKIREYRAVVST 156 (210)
Q Consensus 82 l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~---~L~l~~n-~i~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~ 156 (210)
+++|+.|++++|+++.++. +..+.+|+ .|++++| .++.+++ ..+.++++|+ .|++++|.++.++. ..+.
T Consensus 104 l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~i~~---~~~~ 177 (239)
T 2xwt_C 104 LPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTSVQG---YAFN 177 (239)
T ss_dssp CTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCEECT---TTTT
T ss_pred CCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCcccCH---hhcC
Confidence 5666666666666655544 45555555 6666666 5655553 4455666666 66666666665554 1233
Q ss_pred hCcCcccccCCCC
Q psy4162 157 MIPQLVTLDSVFI 169 (210)
Q Consensus 157 ~l~~L~~L~l~~~ 169 (210)
. ++|+.|++++|
T Consensus 178 ~-~~L~~L~L~~n 189 (239)
T 2xwt_C 178 G-TKLDAVYLNKN 189 (239)
T ss_dssp T-CEEEEEECTTC
T ss_pred C-CCCCEEEcCCC
Confidence 3 55666666665
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.61 E-value=1.9e-15 Score=124.13 Aligned_cols=127 Identities=16% Similarity=0.265 Sum_probs=68.0
Q ss_pred CcceeCCCCCccccchhhhcccCC-cccccCCCC---CC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESP---PM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIG 86 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~---~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~ 86 (210)
...+++++|.++.++...+.++++ ..+.+.-.. .. +..+++|+.|++++|.++.+++ ..|..+++|+
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~ 120 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP------HVFQNVPLLT 120 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCC
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH------HHhcCCCCCC
Confidence 455899999999999887776666 111111111 11 1444555555555555555443 4445555555
Q ss_pred EEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCc
Q psy4162 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147 (210)
Q Consensus 87 ~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 147 (210)
.|++++|+++.+++..+..+++|+.|++++|.+...++ ..+..+++|+.|++++|.+..+
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCcc
Confidence 55555555555554444455555555555555555443 4445555555555555555544
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.61 E-value=2.6e-15 Score=129.70 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=97.5
Q ss_pred CCCCcceeCCCCCccccchhhhcccCC-cccccCCCC---CC---CCCCCCccEEEccCCccccccCCchhhhhccCCCC
Q psy4162 11 PEFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESP---PM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPD 83 (210)
Q Consensus 11 ~~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~---~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~ 83 (210)
|.....|++++|.++.+++..+.++++ ..+.+.-.. .. +.++++|+.|++++|.++.+++ ..|..++
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~ 105 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE------TALSGPK 105 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT------TTTSSCT
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh------hhhcccc
Confidence 346678999999999998877776666 111111111 11 2566667777777777766655 5666677
Q ss_pred CCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcc-
Q psy4162 84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLV- 162 (210)
Q Consensus 84 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~- 162 (210)
+|+.|++++|+++.+.+..+..+++|+.|++++|.+..++. ..+..+++|+.|++++|.+..++. ..+..+++|+
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~ 181 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLSK---EDMSSLQQATN 181 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCEECH---HHHHTTTTCCS
T ss_pred cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCc-ccccCCcccCEEEcccCcccccCh---hhhhhhcccce
Confidence 77777777777776655556667777777777777766542 334446777777777777776644 3566677776
Q ss_pred -cccCCCCCHH
Q psy4162 163 -TLDSVFILPS 172 (210)
Q Consensus 163 -~L~l~~~~~~ 172 (210)
.|++++|.+.
T Consensus 182 l~L~l~~n~l~ 192 (606)
T 3t6q_A 182 LSLNLNGNDIA 192 (606)
T ss_dssp EEEECTTCCCC
T ss_pred eEEecCCCccC
Confidence 6666666543
No 44
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.60 E-value=6.4e-15 Score=108.17 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=97.0
Q ss_pred CCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSF 92 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~ 92 (210)
....+++++|+++.++.... ++ |+.|++++|+|+.+++ ..|..+++|+.|+|++
T Consensus 13 ~~~~l~~~~n~l~~iP~~~~---~~-----------------L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~Ls~ 66 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPAGIP---TD-----------------KQRLWLNNNQITKLEP------GVFDHLVNLQQLYFNS 66 (174)
T ss_dssp CSSEEECCSSCCSSCCSCCC---TT-----------------CSEEECCSSCCCCCCT------TTTTTCTTCCEEECCS
T ss_pred CCcEEEeCCCCCCccCCCcC---CC-----------------CcEEEeCCCCccccCH------HHhcCCcCCCEEECCC
Confidence 34569999999998887432 45 9999999999999986 8899999999999999
Q ss_pred CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162 93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149 (210)
Q Consensus 93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 149 (210)
|+++.+++..|..+++|+.|++++|.++.+++ ..+..+++|+.|++++|++.+.+.
T Consensus 67 N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 67 NKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCCCccChhHhCCcchhhEEECCCCccceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence 99999998878899999999999999999886 678899999999999999998764
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.60 E-value=2.1e-15 Score=132.00 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=96.5
Q ss_pred CCCCCccEEEccCCccccccCCc--hhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLD--SLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFV 127 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 127 (210)
.++.+|+.|++++|.++.++.-. ......|..+++|+.|++++|+++.+++..|..+++|+.|++++|.++.+++ ..
T Consensus 501 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~ 579 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA-SV 579 (680)
T ss_dssp TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TT
T ss_pred ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCH-hH
Confidence 45666999999999998874310 0000237888999999999999999988878999999999999999999886 77
Q ss_pred cccCCCcCEEeeeCCCCCCccchHHHHHH-hCcCcccccCCCCC
Q psy4162 128 LRRVNSLRTLSLYGNPIEKIREYRAVVST-MIPQLVTLDSVFIL 170 (210)
Q Consensus 128 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~l~~L~~L~l~~~~ 170 (210)
+.++++|+.|++++|.++.++. ..+. .+++|+.|++++|+
T Consensus 580 ~~~l~~L~~L~L~~N~l~~~~~---~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 580 FNNQVSLKSLNLQKNLITSVEK---KVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp TTTCTTCCEEECTTSCCCBCCH---HHHHHHHTTCSEEECTTCC
T ss_pred hCCCCCCCEEECCCCcCCccCh---hHhcccccccCEEEccCCC
Confidence 8899999999999999998876 3555 78899999999986
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.60 E-value=3.9e-15 Score=124.26 Aligned_cols=149 Identities=21% Similarity=0.210 Sum_probs=124.2
Q ss_pred CCcceeCCCCCccccchhhhcccCC-cccccCC---CCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGE---SPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI 85 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~---~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L 85 (210)
....|++++|.++.++...|.++++ ..+.+.- .... +..+++|+.|++++|.++.++. ..|..+++|
T Consensus 89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~------~~~~~l~~L 162 (440)
T 3zyj_A 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS------YAFNRIPSL 162 (440)
T ss_dssp SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT------TTTTTCTTC
T ss_pred CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH------HHhhhCccc
Confidence 3466999999999999888776666 2222222 2222 3778999999999999999987 889999999
Q ss_pred CEEECcC-CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162 86 GWIDLSF-NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL 164 (210)
Q Consensus 86 ~~L~Ls~-n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L 164 (210)
+.|++++ +.+..+++..|..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++. ..+..+++|+.|
T Consensus 163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L 236 (440)
T 3zyj_A 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN---LTPLIKLDELDLSGNHLSAIRP---GSFQGLMHLQKL 236 (440)
T ss_dssp CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC---CTTCSSCCEEECTTSCCCEECT---TTTTTCTTCCEE
T ss_pred CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc---cCCCcccCEEECCCCccCccCh---hhhccCccCCEE
Confidence 9999998 57888888789999999999999999998874 7789999999999999998865 378999999999
Q ss_pred cCCCCCHHH
Q psy4162 165 DSVFILPSE 173 (210)
Q Consensus 165 ~l~~~~~~~ 173 (210)
++++|.+..
T Consensus 237 ~L~~n~l~~ 245 (440)
T 3zyj_A 237 WMIQSQIQV 245 (440)
T ss_dssp ECTTCCCCE
T ss_pred ECCCCceeE
Confidence 999997654
No 47
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=3.5e-15 Score=128.35 Aligned_cols=124 Identities=23% Similarity=0.289 Sum_probs=102.2
Q ss_pred CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN 93 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n 93 (210)
...|++++|.|+.++. +.++++ |+.|++++|.++.+| ..+..+++|+.|++++|
T Consensus 443 L~~L~Ls~n~l~~lp~--~~~l~~-----------------L~~L~Ls~N~l~~lp-------~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH--LEQLLL-----------------VTHLDLSHNRLRALP-------PALAALRCLEVLQASDN 496 (567)
T ss_dssp CSEEECTTSCCSSCCC--GGGGTT-----------------CCEEECCSSCCCCCC-------GGGGGCTTCCEEECCSS
T ss_pred ceEEEecCCCCCCCcC--cccccc-----------------CcEeecCcccccccc-------hhhhcCCCCCEEECCCC
Confidence 3568888888888876 555667 999999999999776 67888899999999999
Q ss_pred CCCcCCcccccCCCCccEEEccCCccCccc-cccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccC
Q psy4162 94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYL-SVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDS 166 (210)
Q Consensus 94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l 166 (210)
++++++ .+..+++|+.|++++|.++++. + ..++.+++|+.|++++|++++.++.....+..+++|+.|++
T Consensus 497 ~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 497 ALENVD--GVANLPRLQELLLCNNRLQQSAAI-QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCCCG--GGTTCSSCCEEECCSSCCCSSSTT-GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCc--ccCCCCCCcEEECCCCCCCCCCCc-HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999876 3888999999999999998884 4 67888999999999999998887665556777888888864
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.59 E-value=2.3e-15 Score=122.04 Aligned_cols=152 Identities=15% Similarity=0.084 Sum_probs=113.1
Q ss_pred CCcceeCCCCCccccchhhhcccCC-cccccCCCCCC------CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM------LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI 85 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~------~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L 85 (210)
....|++++|+++.++...+.++++ ..+.+.-..+. +.++++|+.|++++|.++.++. ..|..+++|
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L 126 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS------SWFKPLSSL 126 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH------HHHTTCTTC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH------hHhCCCccC
Confidence 4566899999998888766665555 11222211111 2667888888888888888774 557888888
Q ss_pred CEEECcCCCCCcCCc-ccccCCCCccEEEccCC-ccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccc
Q psy4162 86 GWIDLSFNNIKNVDK-NMFTNFPNLKILYLHKN-QIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVT 163 (210)
Q Consensus 86 ~~L~Ls~n~i~~~~~-~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~ 163 (210)
+.|++++|+++.++. ..+..+++|+.|++++| .+...++ ..+..+++|+.|++++|.+.+... ..+..+++|+.
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~ 202 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQSYEP---KSLKSIQNVSH 202 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECT---TTTTTCSEEEE
T ss_pred CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCccCH---HHHhccccCCe
Confidence 888888888888876 55778888888888888 4666654 667888889999999998887644 26888899999
Q ss_pred ccCCCCCHHHH
Q psy4162 164 LDSVFILPSEK 174 (210)
Q Consensus 164 L~l~~~~~~~~ 174 (210)
|++++|.....
T Consensus 203 L~l~~n~l~~~ 213 (353)
T 2z80_A 203 LILHMKQHILL 213 (353)
T ss_dssp EEEECSCSTTH
T ss_pred ecCCCCccccc
Confidence 99998886443
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.59 E-value=5.6e-15 Score=124.29 Aligned_cols=149 Identities=18% Similarity=0.157 Sum_probs=124.4
Q ss_pred CCcceeCCCCCccccchhhhcccCC-cccccC---CCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLG---ESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI 85 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~---~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L 85 (210)
....|++++|.++.+.+..+.++++ ..+.+. +...+ +.++++|+.|++++|.+..+.+ ..|..+++|
T Consensus 57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~------~~~~~l~~L 130 (477)
T 2id5_A 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD------YMFQDLYNL 130 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT------TTTTTCTTC
T ss_pred CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh------hHccccccC
Confidence 3566999999999998877776655 122222 22222 2778999999999999999876 789999999
Q ss_pred CEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccccc
Q psy4162 86 GWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165 (210)
Q Consensus 86 ~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~ 165 (210)
+.|++++|.+..+.+..+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.+..++. ..+..+++|+.|+
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~ 206 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRD---YSFKRLYRLKVLE 206 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECT---TCSCSCTTCCEEE
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeCh---hhcccCcccceee
Confidence 999999999999988889999999999999999999885 778999999999999999998876 3688899999999
Q ss_pred CCCCCH
Q psy4162 166 SVFILP 171 (210)
Q Consensus 166 l~~~~~ 171 (210)
+++|..
T Consensus 207 l~~~~~ 212 (477)
T 2id5_A 207 ISHWPY 212 (477)
T ss_dssp EECCTT
T ss_pred CCCCcc
Confidence 988754
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=6e-15 Score=115.63 Aligned_cols=111 Identities=23% Similarity=0.206 Sum_probs=63.2
Q ss_pred CCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSF 92 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~ 92 (210)
....|++++|.++.++...+.++++ |+.|++++|.++.+++ ..|..+++|+.|++++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~-----------------L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 53 ELQVLDLSRCEIQTIEDGAYQSLSH-----------------LSTLILTGNPIQSLAL------GAFSGLSSLQKLVAVE 109 (276)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTT-----------------CCEEECTTCCCCEECT------TTTTTCTTCCEEECTT
T ss_pred CCcEEECCCCcCCccCHHHccCCcC-----------------CCEEECCCCccCccCh------hhhcCCccccEEECCC
Confidence 3566999999999998877776666 5555555555555543 4445555555555555
Q ss_pred CCCCcCCcccccCCCCccEEEccCCccCccc-cccccccCCCcCEEeeeCCCCCCc
Q psy4162 93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYL-SVFVLRRVNSLRTLSLYGNPIEKI 147 (210)
Q Consensus 93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 147 (210)
|++..+.+..+..+++|+.|++++|.++... + ..+..+++|+.|++++|.+..+
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~-~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECCSSCCCEE
T ss_pred CCccccCchhcccCCCCCEEECcCCccceecCc-hhhccCCCCCEEECCCCCCCcC
Confidence 5555544433445555555555555554422 1 3444555555555555555444
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.58 E-value=3.1e-15 Score=118.91 Aligned_cols=152 Identities=15% Similarity=0.177 Sum_probs=118.6
Q ss_pred CCcceeCCCCCccccch-hhhcccCC-cccccCCCCC---C---CCCCCCccEEEccCCcccc-ccCCchhhhhccCCCC
Q psy4162 13 FKIPLDLSFQQIQSLDK-VAVQKLKP-NVHRLGESPP---M---LVGRYDTRSLWLSHNKISL-VYGLDSLVHRTILDPD 83 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~-~~~~~l~~-~~~~~~~~~~---~---~~~l~~L~~L~ls~n~l~~-~~~l~~~~~~~~~~l~ 83 (210)
....|++++|+++.++. ..+.++++ ..+.+..... . ...+++|+.|++++|.++. ..+ ..+..++
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~~l~ 175 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------DIFTELR 175 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC------SCCTTCT
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch------hHHhhCc
Confidence 34668999999988876 34444444 1111221111 1 2678889999999999987 333 7788899
Q ss_pred CCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCc-Ccc
Q psy4162 84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIP-QLV 162 (210)
Q Consensus 84 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~-~L~ 162 (210)
+|+.|++++|+++.+.+..+..+++|+.|++++|.++..+. ..+..+++|+.|++++|++.+... ..+..++ +|+
T Consensus 176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~~~~~L~ 251 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKK---QELQHFPSSLA 251 (306)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCCBCSS---SSCCCCCTTCC
T ss_pred CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCcccCH---HHHHhhhccCC
Confidence 99999999999999987778999999999999999999875 678899999999999999997654 2567774 899
Q ss_pred cccCCCCCHHHH
Q psy4162 163 TLDSVFILPSEK 174 (210)
Q Consensus 163 ~L~l~~~~~~~~ 174 (210)
.|++++|+....
T Consensus 252 ~L~L~~N~~~~~ 263 (306)
T 2z66_A 252 FLNLTQNDFACT 263 (306)
T ss_dssp EEECTTCCEECS
T ss_pred EEEccCCCeecc
Confidence 999999987543
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.58 E-value=4.8e-15 Score=124.06 Aligned_cols=149 Identities=21% Similarity=0.189 Sum_probs=124.0
Q ss_pred CCcceeCCCCCccccchhhhcccCC-cccccCCC---CCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGES---PPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI 85 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~---~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L 85 (210)
....|++++|+++.+++..+.++++ ..+.+.-. ... +..+++|+.|++++|+++.++. ..|..+++|
T Consensus 100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L 173 (452)
T 3zyi_A 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS------YAFNRVPSL 173 (452)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT------TTTTTCTTC
T ss_pred CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH------hHHhcCCcc
Confidence 3566999999999998877776665 22222222 222 2679999999999999999987 889999999
Q ss_pred CEEECcC-CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162 86 GWIDLSF-NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL 164 (210)
Q Consensus 86 ~~L~Ls~-n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L 164 (210)
+.|++++ |.+..++...+..+++|+.|++++|.++.++. +..+++|+.|++++|.+.+++. ..+..+++|+.|
T Consensus 174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L 247 (452)
T 3zyi_A 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN---LTPLVGLEELEMSGNHFPEIRP---GSFHGLSSLKKL 247 (452)
T ss_dssp CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC---CTTCTTCCEEECTTSCCSEECG---GGGTTCTTCCEE
T ss_pred cEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc---ccccccccEEECcCCcCcccCc---ccccCccCCCEE
Confidence 9999998 57888888889999999999999999998864 7789999999999999998865 478999999999
Q ss_pred cCCCCCHHH
Q psy4162 165 DSVFILPSE 173 (210)
Q Consensus 165 ~l~~~~~~~ 173 (210)
++++|.+..
T Consensus 248 ~L~~n~l~~ 256 (452)
T 3zyi_A 248 WVMNSQVSL 256 (452)
T ss_dssp ECTTSCCCE
T ss_pred EeCCCcCce
Confidence 999997643
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=4.6e-15 Score=128.39 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=69.0
Q ss_pred CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN 93 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n 93 (210)
...+++++|.++.+++..+.++++ |+.|++++|.++.+++ ..|..+++|+.|++++|
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~-----------------L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n 109 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQ-----------------VELLNLNDLQIEEIDT------YAFAYAHTIQKLYMGFN 109 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCC-----------------CSEEECTTSCCCEECT------TTTTTCTTCCEEECCSS
T ss_pred ceEEEeeCCCCCCcCHHHHccCCC-----------------CcEEECCCCCCCCCCh------HHhcCCCCCCEEECCCC
Confidence 355888899999998887776666 5555555555544443 34444445555555555
Q ss_pred CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCC
Q psy4162 94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFIL 170 (210)
Q Consensus 94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~ 170 (210)
.++.+++..++.+++|+.|++++|.++.+++ ..++.+++|+.|++++|.+.++++ ..+..+++|+.|++++|.
T Consensus 110 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIED---DTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEECTTSC
T ss_pred cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCCh---hhhhcCCcCcEEECcCCC
Confidence 5544444444444455555555555444443 334444455555555554444433 134444444444444443
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.57 E-value=7.3e-15 Score=128.56 Aligned_cols=151 Identities=19% Similarity=0.129 Sum_probs=120.1
Q ss_pred CCCcceeCCCCCccccchhhhcccCC-cccccCC---CCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCC
Q psy4162 12 EFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGE---SPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDL 84 (210)
Q Consensus 12 ~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~---~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~ 84 (210)
.....|++++|.++.+++..+.++++ ..+.+.. .... ++.+++|+.|++++|.++.++. ..|..+++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~------~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD------KTFAFCTN 98 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT------TTTTTCTT
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh------hhhccCCC
Confidence 35677999999999999877776655 1122221 2221 2678889999999999998886 67889999
Q ss_pred CCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHH--hCcCcc
Q psy4162 85 IGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVST--MIPQLV 162 (210)
Q Consensus 85 L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~l~~L~ 162 (210)
|++|++++|+++.+++..+..+++|+.|++++|.++..++ ..+.++++|+.|++++|.+++++. ..+. .+++|+
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~~~L~ 174 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALKS---EELDIFANSSLK 174 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCCBCH---HHHGGGTTCEES
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc-hhhcccccCCEEEccCCcccccCH---HHhhcccccccc
Confidence 9999999999999887778899999999999999988775 778889999999999999998866 3443 458899
Q ss_pred cccCCCCCHH
Q psy4162 163 TLDSVFILPS 172 (210)
Q Consensus 163 ~L~l~~~~~~ 172 (210)
.|++++|.+.
T Consensus 175 ~L~L~~n~l~ 184 (680)
T 1ziw_A 175 KLELSSNQIK 184 (680)
T ss_dssp EEECTTCCCC
T ss_pred EEECCCCccc
Confidence 9999888654
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.57 E-value=4.9e-15 Score=117.74 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=117.7
Q ss_pred CCcceeCCCCCccccchhhhcccCC-cccccCC---CCC---C-CCCCCCccEEEccCCccccccCCchhhhhccCCCCC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGE---SPP---M-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDL 84 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~---~~~---~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~ 84 (210)
....|++++|.++.++.. +.++++ ..+.+.. ... . ...+++|+.|++++|.+....+ ..+..+++
T Consensus 79 ~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~ 151 (306)
T 2z66_A 79 SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN------GIFNGLSS 151 (306)
T ss_dssp CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST------TTTTTCTT
T ss_pred ccCEEECCCCccccChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch------hhcccCcC
Confidence 356799999999987764 333333 1111111 111 2 3678899999999999988776 77888999
Q ss_pred CCEEECcCCCCCc-CCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccc
Q psy4162 85 IGWIDLSFNNIKN-VDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVT 163 (210)
Q Consensus 85 L~~L~Ls~n~i~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~ 163 (210)
|+.|++++|.++. ..+..+..+++|+.|++++|.++..++ ..+..+++|+.|++++|.+.+++. ..+..+++|+.
T Consensus 152 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~ 227 (306)
T 2z66_A 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLDT---FPYKCLNSLQV 227 (306)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCSBCCS---GGGTTCTTCCE
T ss_pred CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccCccCh---hhccCcccCCE
Confidence 9999999999986 344458889999999999999999875 778899999999999999998876 35788999999
Q ss_pred ccCCCCCHHH
Q psy4162 164 LDSVFILPSE 173 (210)
Q Consensus 164 L~l~~~~~~~ 173 (210)
|++++|.+..
T Consensus 228 L~L~~N~l~~ 237 (306)
T 2z66_A 228 LDYSLNHIMT 237 (306)
T ss_dssp EECTTSCCCB
T ss_pred eECCCCCCcc
Confidence 9999997654
No 56
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=2.7e-14 Score=111.48 Aligned_cols=137 Identities=20% Similarity=0.223 Sum_probs=78.7
Q ss_pred CcceeCCCCCccccchhhhcccCC-cccccCCCCCC----CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM----LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI 88 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L 88 (210)
...|++++|+++.++. +..+++ ..+.+.-..+. ...+++|+.|++++|+++.+++ +.. ++|+.|
T Consensus 43 L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~--------~~~-~~L~~L 111 (263)
T 1xeu_A 43 VQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNG--------IPS-ACLSRL 111 (263)
T ss_dssp CSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTT--------CCC-SSCCEE
T ss_pred CcEEECcCCCcccchH--HhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCc--------ccc-CcccEE
Confidence 3458888888887773 333444 11111111111 2455566666666666666543 111 566666
Q ss_pred ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF 168 (210)
Q Consensus 89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~ 168 (210)
++++|+++.++. +..+++|+.|++++|++++++ .+..+++|+.|++++|.++++. .+..+++|+.|++++
T Consensus 112 ~L~~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~~-----~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 112 FLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNTG-----GLTRLKKVNWIDLTG 181 (263)
T ss_dssp ECCSSCCSBSGG--GTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBCT-----TSTTCCCCCEEEEEE
T ss_pred EccCCccCCChh--hcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcchH-----HhccCCCCCEEeCCC
Confidence 666666666543 566666666666666666654 2556666667777776666662 356666666666666
Q ss_pred CCH
Q psy4162 169 ILP 171 (210)
Q Consensus 169 ~~~ 171 (210)
|++
T Consensus 182 N~~ 184 (263)
T 1xeu_A 182 QKC 184 (263)
T ss_dssp EEE
T ss_pred Ccc
Confidence 654
No 57
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.55 E-value=2.6e-14 Score=119.32 Aligned_cols=136 Identities=21% Similarity=0.290 Sum_probs=75.4
Q ss_pred CCCCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccc-cccCCchhhhhccCCCCCCCEEE
Q psy4162 11 PEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKIS-LVYGLDSLVHRTILDPDLIGWID 89 (210)
Q Consensus 11 ~~~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~-~~~~l~~~~~~~~~~l~~L~~L~ 89 (210)
|.....|++++|.++.+.+..+.++++ |+.|++++|.+. .+++ ..|..+++|+.|+
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~-----------------L~~L~L~~n~~~~~i~~------~~~~~l~~L~~L~ 85 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQD-----------------LQFLKVEQQTPGLVIRN------NTFRGLSSLIILK 85 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTT-----------------CCEEECCCCSTTCEECT------TTTTTCTTCCEEE
T ss_pred CCccCEEEecCCccCcCChhHhccCcc-----------------ccEEECcCCcccceECc------ccccccccCCEEe
Confidence 345667888888888887776666666 555555555554 3333 4455555555555
Q ss_pred CcCCCCCcCCcccccCCCCccEEEccCCccCccc-cccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162 90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYL-SVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF 168 (210)
Q Consensus 90 Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~ 168 (210)
+++|+++.+.+..+..+++|+.|++++|.+++.. ....+..+++|+.|++++|.+..+.+. ..+..+++|+.|++++
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA--SFFLNMRRFHVLDLTF 163 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC--GGGGGCTTCCEEECTT
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc--cccCCCCcccEEeCCC
Confidence 5555555554444555555555555555555421 112245555555555555555544220 1245555555555555
Q ss_pred CCH
Q psy4162 169 ILP 171 (210)
Q Consensus 169 ~~~ 171 (210)
|.+
T Consensus 164 n~l 166 (455)
T 3v47_A 164 NKV 166 (455)
T ss_dssp CCB
T ss_pred Ccc
Confidence 543
No 58
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.55 E-value=3.9e-14 Score=116.24 Aligned_cols=123 Identities=19% Similarity=0.143 Sum_probs=80.6
Q ss_pred CcceeCCCCCccccchhhhcccCC-cccccC---CCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLG---ESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIG 86 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~---~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~ 86 (210)
...|++++|.++.+++..+.++++ ..+.+. +.... +..+++|+.|++++|.++.++. ..|..+++|+
T Consensus 71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~------~~~~~l~~L~ 144 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR------GIFHNTPKLT 144 (390)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCC
T ss_pred CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH------HHhcCCCCCc
Confidence 455788888887777665554444 111111 11221 2667778888888888887775 5567778888
Q ss_pred EEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCC
Q psy4162 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146 (210)
Q Consensus 87 ~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~ 146 (210)
.|++++|+++.+++..+..+++|+.|++++|.++..+ +..+++|+.+++++|.+..
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCCSE
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccceeecccccccc
Confidence 8888888888777766777788888888888777664 3345555555555555544
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.55 E-value=8.2e-15 Score=125.10 Aligned_cols=149 Identities=18% Similarity=0.165 Sum_probs=87.1
Q ss_pred CCcceeCCCCCccccchhhhcccCC-cccccCCCCC---C---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPP---M---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI 85 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~---~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L 85 (210)
....|++++|+++.+++..+.++++ ..+.+....+ . +.++++|+.|++++|.++++++ ..|..+++|
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L 100 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS------SWFGPLSSL 100 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH------HHHTTCTTC
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH------HHhccCCCC
Confidence 4567899999988887766666655 1111111111 1 2555666666666666666553 446666666
Q ss_pred CEEECcCCCCCcCC-cccccCCCCccEEEccCCc-cCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccc
Q psy4162 86 GWIDLSFNNIKNVD-KNMFTNFPNLKILYLHKNQ-IEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVT 163 (210)
Q Consensus 86 ~~L~Ls~n~i~~~~-~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~ 163 (210)
+.|++++|+++.+. +..+..+++|+.|++++|. +..+++ ..+.++++|+.|++++|.+.+... ..+..+++|+.
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~ 176 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALSLRNYQS---QSLKSIRDIHH 176 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECT---TTTTTCSEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH-hhhhcccccCeeeccCCcccccCh---hhhhccccCce
Confidence 66666666665432 2235566666666666665 444442 455666666666666666665332 24666667777
Q ss_pred ccCCCCCH
Q psy4162 164 LDSVFILP 171 (210)
Q Consensus 164 L~l~~~~~ 171 (210)
|++..+..
T Consensus 177 L~l~~n~~ 184 (549)
T 2z81_A 177 LTLHLSES 184 (549)
T ss_dssp EEEECSBS
T ss_pred EecccCcc
Confidence 77666654
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.54 E-value=1.5e-14 Score=115.73 Aligned_cols=109 Identities=21% Similarity=0.146 Sum_probs=92.7
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhcc-CCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTI-LDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL 128 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 128 (210)
..+++|+.|++++|.++.++. ..+ ..+++|+.|++++|+++.++. ...+++|+.|++++|.++.+++ .+
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~------~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~--~~ 210 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNF------AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP--EF 210 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEG------GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG--GG
T ss_pred hccCCCCEEECCCCCCCcccH------HHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchh--hh
Confidence 446679999999999998764 444 467899999999999998865 3458899999999999999874 38
Q ss_pred ccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 129 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 129 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
..+++|+.|++++|.++.++. .+..+++|+.|++++|+..
T Consensus 211 ~~l~~L~~L~L~~N~l~~l~~----~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLVLIEK----ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGTTCSEEECTTSCCCEECT----TCCCCTTCCEEECTTCCCB
T ss_pred cccCcccEEECcCCcccchhh----HhhcCCCCCEEEccCCCcc
Confidence 889999999999999998887 5788999999999999886
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.54 E-value=7.9e-15 Score=118.91 Aligned_cols=152 Identities=11% Similarity=0.049 Sum_probs=122.4
Q ss_pred CCcceeCCCCCccccchhhhcccCC-cccccCCC---CCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGES---PPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI 85 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~---~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L 85 (210)
....|++++|+++.+.+..+.++++ ..+.+... ... +..+++|+.|++++|+++.++.. ..+..+++|
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-----~~~~~l~~L 151 (353)
T 2z80_A 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET-----SLFSHLTKL 151 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS-----CSCTTCTTC
T ss_pred CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch-----hhhccCCCC
Confidence 3566999999999988776665555 22222222 222 27889999999999999987630 267888999
Q ss_pred CEEECcCC-CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162 86 GWIDLSFN-NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL 164 (210)
Q Consensus 86 ~~L~Ls~n-~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L 164 (210)
+.|++++| .+..+++..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+..++. ..+..+++|+.|
T Consensus 152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L 227 (353)
T 2z80_A 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP-KSLKSIQNVSHLILHMKQHILLLE---IFVDVTSSVECL 227 (353)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEEEECSCSTTHHH---HHHHHTTTEEEE
T ss_pred cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH-HHHhccccCCeecCCCCccccchh---hhhhhcccccEE
Confidence 99999999 5888887778999999999999999998865 778999999999999999988876 457779999999
Q ss_pred cCCCCCHHH
Q psy4162 165 DSVFILPSE 173 (210)
Q Consensus 165 ~l~~~~~~~ 173 (210)
++++|.+..
T Consensus 228 ~L~~n~l~~ 236 (353)
T 2z80_A 228 ELRDTDLDT 236 (353)
T ss_dssp EEESCBCTT
T ss_pred ECCCCcccc
Confidence 999997654
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=5.5e-14 Score=121.60 Aligned_cols=110 Identities=22% Similarity=0.325 Sum_probs=77.4
Q ss_pred CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN 93 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n 93 (210)
...|++++|.++.+++..+.++++ |+.|++++|.++.+++ ..|..+++|+.|++++|
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~-----------------L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHT-----------------IQKLYMGFNAIRYLPP------HVFQNVPLLTVLVLERN 133 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTT-----------------CCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSS
T ss_pred CcEEECCCCCCCCCChHHhcCCCC-----------------CCEEECCCCcCCCCCH------HHHcCCCCCCEEEeeCC
Confidence 567999999999998877776666 6777777776666665 55666666777777777
Q ss_pred CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCc
Q psy4162 94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147 (210)
Q Consensus 94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 147 (210)
.++.+++..|..+++|+.|++++|.+...++ ..+..+++|+.|++++|.+..+
T Consensus 134 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBC
T ss_pred CCCCCCHHHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCc
Confidence 6666666655666667777777766666654 5566666666677666666655
No 63
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=6.2e-14 Score=110.97 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=40.9
Q ss_pred CCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcC
Q psy4162 81 DPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQ 160 (210)
Q Consensus 81 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~ 160 (210)
.+++|+.|++++|+++.+. .+..+++|+.|++++|.++..++ +..+++|+.|++++|.+++++. +..+++
T Consensus 132 ~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~~-----l~~l~~ 201 (291)
T 1h6t_A 132 HLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRA-----LAGLKN 201 (291)
T ss_dssp GCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCGG-----GTTCTT
T ss_pred CCCCCCEEEccCCcCCcch--hhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCChh-----hccCCC
Confidence 3445555555555555442 14445555555555555555442 4455555555555555555432 445555
Q ss_pred cccccCCCCCH
Q psy4162 161 LVTLDSVFILP 171 (210)
Q Consensus 161 L~~L~l~~~~~ 171 (210)
|+.|++++|++
T Consensus 202 L~~L~l~~n~i 212 (291)
T 1h6t_A 202 LDVLELFSQEC 212 (291)
T ss_dssp CSEEEEEEEEE
T ss_pred CCEEECcCCcc
Confidence 55555555543
No 64
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.53 E-value=6.1e-14 Score=113.15 Aligned_cols=141 Identities=21% Similarity=0.241 Sum_probs=83.8
Q ss_pred CcceeCCCCCccccchhhhcccCC-cccccCCCCCC----CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM----LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI 88 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L 88 (210)
...+++++|.++.++. +..+++ ..+.+.-.... ...+++|+.|++++|.++.++ .+..+++|+.|
T Consensus 201 L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L 270 (347)
T 4fmz_A 201 LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN--------AVKDLTKLKML 270 (347)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--------GGTTCTTCCEE
T ss_pred cceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCCh--------hHhcCCCcCEE
Confidence 4558888888887776 333344 11111111111 145555677777776666642 34555667777
Q ss_pred ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF 168 (210)
Q Consensus 89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~ 168 (210)
++++|+++.++. +..+++|+.|++++|.++...+ ..+..+++|+.|++++|+++++++ +..+++|+.|++++
T Consensus 271 ~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 271 NVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNHITDIRP-----LASLSKMDSADFAN 342 (347)
T ss_dssp ECCSSCCCCCGG--GGGCTTCSEEECCSSCCCGGGH-HHHHTCTTCSEEECCSSSCCCCGG-----GGGCTTCSEESSSC
T ss_pred EccCCccCCChh--hcCCCCCCEEECcCCcCCCcCh-hHhhccccCCEEEccCCccccccC-----hhhhhccceeehhh
Confidence 777777666632 5666677777777777666554 556667777777777777766654 56667777777777
Q ss_pred CCHH
Q psy4162 169 ILPS 172 (210)
Q Consensus 169 ~~~~ 172 (210)
|++.
T Consensus 343 N~i~ 346 (347)
T 4fmz_A 343 QVIK 346 (347)
T ss_dssp C---
T ss_pred hccc
Confidence 6653
No 65
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.52 E-value=6.5e-14 Score=112.44 Aligned_cols=128 Identities=21% Similarity=0.206 Sum_probs=63.1
Q ss_pred CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN 93 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n 93 (210)
...|++++|+++.++...+.++++ |+.|++++|.++.+.+ ..|..+++|+.|++++|
T Consensus 54 l~~L~L~~n~i~~~~~~~~~~l~~-----------------L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 54 TALLDLQNNKITEIKDGDFKNLKN-----------------LHTLILINNKISKISP------GAFAPLVKLERLYLSKN 110 (330)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTT-----------------CCEEECCSSCCCCBCT------TTTTTCTTCCEEECCSS
T ss_pred CeEEECCCCcCCEeChhhhccCCC-----------------CCEEECCCCcCCeeCH------HHhcCCCCCCEEECCCC
Confidence 445777777777766655554444 5555555555544433 44444445555555555
Q ss_pred CCCc---------------------CCcccccCCCCccEEEccCCccCc--cccccccccCCCcCEEeeeCCCCCCccch
Q psy4162 94 NIKN---------------------VDKNMFTNFPNLKILYLHKNQIEE--YLSVFVLRRVNSLRTLSLYGNPIEKIREY 150 (210)
Q Consensus 94 ~i~~---------------------~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 150 (210)
+++. +++..+..+++|+.|++++|.+.. ..+ ..+..+++|+.|++++|.+..++.
T Consensus 111 ~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~- 188 (330)
T 1xku_A 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRIADTNITTIPQ- 188 (330)
T ss_dssp CCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCCEEECCSSCCCSCCS-
T ss_pred cCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh-hhccCCCCcCEEECCCCccccCCc-
Confidence 4444 444334444455555555554432 111 334445555555555555554443
Q ss_pred HHHHHHhCcCcccccCCCCCH
Q psy4162 151 RAVVSTMIPQLVTLDSVFILP 171 (210)
Q Consensus 151 ~~~~l~~l~~L~~L~l~~~~~ 171 (210)
.+ .++|+.|++++|.+
T Consensus 189 ---~~--~~~L~~L~l~~n~l 204 (330)
T 1xku_A 189 ---GL--PPSLTELHLDGNKI 204 (330)
T ss_dssp ---SC--CTTCSEEECTTSCC
T ss_pred ---cc--cccCCEEECCCCcC
Confidence 11 14455555555543
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=7.4e-15 Score=112.82 Aligned_cols=147 Identities=13% Similarity=0.062 Sum_probs=117.7
Q ss_pred CCcceeCCCCC-ccccchhhhcccCC-ccccc----CCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCC
Q psy4162 13 FKIPLDLSFQQ-IQSLDKVAVQKLKP-NVHRL----GESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPD 83 (210)
Q Consensus 13 ~~~~L~ls~n~-l~~l~~~~~~~l~~-~~~~~----~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~ 83 (210)
....|++++|+ ++.+++..+.++++ ..+.+ .+.... +.++++|+.|++++|.++.++. |..++
T Consensus 56 ~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--------~~~l~ 127 (239)
T 2xwt_C 56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--------LTKVY 127 (239)
T ss_dssp TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--------CTTCC
T ss_pred CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--------ccccc
Confidence 34669999997 99999877766655 22222 222222 2688999999999999999763 56667
Q ss_pred CCC---EEECcCC-CCCcCCcccccCCCCcc-EEEccCCccCccccccccccCCCcCEEeeeCCC-CCCccchHHHHHHh
Q psy4162 84 LIG---WIDLSFN-NIKNVDKNMFTNFPNLK-ILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNP-IEKIREYRAVVSTM 157 (210)
Q Consensus 84 ~L~---~L~Ls~n-~i~~~~~~~~~~~~~L~-~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 157 (210)
+|+ .|++++| +++.+++..|..+++|+ .|++++|.++.++. ..+.. ++|+.|++++|+ ++.++. ..+..
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L~~L~L~~n~~l~~i~~---~~~~~ 202 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKLDAVYLNKNKYLTVIDK---DAFGG 202 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEEEEEECTTCTTCCEECT---TTTTT
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH-hhcCC-CCCCEEEcCCCCCcccCCH---HHhhc
Confidence 777 9999999 99999988899999999 99999999998875 55666 899999999995 998876 36888
Q ss_pred C-cCcccccCCCCCHH
Q psy4162 158 I-PQLVTLDSVFILPS 172 (210)
Q Consensus 158 l-~~L~~L~l~~~~~~ 172 (210)
+ ++|+.|++++|.+.
T Consensus 203 l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 203 VYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CSBCCSEEECTTCCCC
T ss_pred cccCCcEEECCCCccc
Confidence 8 99999999998764
No 67
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=3.5e-14 Score=103.72 Aligned_cols=105 Identities=20% Similarity=0.166 Sum_probs=94.7
Q ss_pred ccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCc
Q psy4162 55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134 (210)
Q Consensus 55 L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L 134 (210)
.+.+++++|.++.+|. . + .+.|+.|++++|+++.+++..|..+++|+.|++++|+++.+++ ..+..+++|
T Consensus 11 ~~~l~~s~n~l~~ip~------~-~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L 80 (170)
T 3g39_A 11 GTTVDCSGKSLASVPT------G-I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA-GVFDKLTQL 80 (170)
T ss_dssp TTEEECTTSCCSSCCS------C-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred CCEEEeCCCCcCccCc------c-C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh-hhccCCCCC
Confidence 6889999999999884 2 2 2789999999999999988889999999999999999999986 778999999
Q ss_pred CEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 135 ~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
+.|++++|.++.++. ..+..+++|+.|++++|+..
T Consensus 81 ~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 81 TQLSLNDNQLKSIPR---GAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCBC
T ss_pred CEEECCCCccCEeCH---HHhcCCCCCCEEEeCCCCCC
Confidence 999999999999887 46889999999999999764
No 68
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.52 E-value=4.4e-14 Score=122.03 Aligned_cols=150 Identities=16% Similarity=0.164 Sum_probs=120.4
Q ss_pred CCcceeCCCCCccccch-hhhcccCC-cccccCCCCC----C--CCCCCCccEEEccCCcccc-ccCCchhhhhccCCCC
Q psy4162 13 FKIPLDLSFQQIQSLDK-VAVQKLKP-NVHRLGESPP----M--LVGRYDTRSLWLSHNKISL-VYGLDSLVHRTILDPD 83 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~-~~~~~l~~-~~~~~~~~~~----~--~~~l~~L~~L~ls~n~l~~-~~~l~~~~~~~~~~l~ 83 (210)
....|++++|.++.+.+ ..+.++++ ..+.+..... + ...+++|+.|++++|.+++ ..+ ..+..++
T Consensus 400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~~l~ 473 (606)
T 3vq2_A 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS------NVFANTT 473 (606)
T ss_dssp TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC------SCCTTCT
T ss_pred CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH------HhhccCC
Confidence 34568999999988766 34444444 1111221111 1 2678889999999999987 344 7788999
Q ss_pred CCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCc-Ccc
Q psy4162 84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIP-QLV 162 (210)
Q Consensus 84 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~-~L~ 162 (210)
+|+.|++++|+++.+.+..+..+++|+.|++++|+++...+ ..+..+++|+.|++++|.++.+|. .+..++ +|+
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~p~----~~~~l~~~L~ 548 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNRIETSKG----ILQHFPKSLA 548 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSCCCCEES----CGGGSCTTCC
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCcCcccCH----hHhhhcccCc
Confidence 99999999999999988889999999999999999999875 788999999999999999999988 488887 599
Q ss_pred cccCCCCCHHH
Q psy4162 163 TLDSVFILPSE 173 (210)
Q Consensus 163 ~L~l~~~~~~~ 173 (210)
.|++++|+...
T Consensus 549 ~l~l~~N~~~c 559 (606)
T 3vq2_A 549 FFNLTNNSVAC 559 (606)
T ss_dssp EEECCSCCCCC
T ss_pred EEEccCCCccc
Confidence 99999998654
No 69
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=3.4e-14 Score=110.90 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=67.8
Q ss_pred CcceeCCCCCccccchhhhcccCC-cccccCCCCCC----CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM----LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI 88 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L 88 (210)
...|++++|+++.+++ +.++++ ..+.+.-..+. ... .+|+.|++++|.++.++ .+..+++|+.|
T Consensus 65 L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~--------~l~~l~~L~~L 133 (263)
T 1xeu_A 65 LKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD--------SLIHLKNLEIL 133 (263)
T ss_dssp CCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG--------GGTTCTTCCEE
T ss_pred CCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCCh--------hhcCcccccEE
Confidence 3456677777666665 333333 11111111111 122 56677777777666653 24556667777
Q ss_pred ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCcc
Q psy4162 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR 148 (210)
Q Consensus 89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 148 (210)
++++|+++.++. +..+++|+.|++++|.++... .+..+++|+.|++++|++...+
T Consensus 134 ~Ls~N~i~~~~~--l~~l~~L~~L~L~~N~i~~~~---~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 134 SIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTG---GLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp ECTTSCCCBCGG--GGGCTTCCEEECTTSCCCBCT---TSTTCCCCCEEEEEEEEEECCC
T ss_pred ECCCCcCCCChH--HccCCCCCEEECCCCcCcchH---HhccCCCCCEEeCCCCcccCCc
Confidence 777777666642 566667777777777666652 3556666777777777666554
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.51 E-value=1e-13 Score=110.50 Aligned_cols=141 Identities=23% Similarity=0.300 Sum_probs=93.3
Q ss_pred cceeCCCCCccccchhhhcccCC-cccccCCCCC---C-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEE
Q psy4162 15 IPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPP---M-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWID 89 (210)
Q Consensus 15 ~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~---~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~ 89 (210)
..|++++|.++.++. +.++++ ..+.+....+ . ...+++|+.|++++|.++.++ .+..+++|+.|+
T Consensus 66 ~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L~~L~ 135 (308)
T 1h6u_A 66 IGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT--------PLAGLSNLQVLY 135 (308)
T ss_dssp CEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCG--------GGTTCTTCCEEE
T ss_pred CEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCch--------hhcCCCCCCEEE
Confidence 446666666666665 333333 1111111111 1 255666666666666666653 256667788888
Q ss_pred CcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCC
Q psy4162 90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFI 169 (210)
Q Consensus 90 Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~ 169 (210)
+++|+++.+++ +..+++|+.|++++|.++.+++ +..+++|+.|++++|.+++++. +..+++|+.|++++|
T Consensus 136 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDISP-----LASLPNLIEVHLKNN 205 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECTTS
T ss_pred CCCCccCcCcc--ccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCccCcChh-----hcCCCCCCEEEccCC
Confidence 88887777765 6677788888888888877653 6778888888888888887765 677888888888888
Q ss_pred CHHHHH
Q psy4162 170 LPSEKQ 175 (210)
Q Consensus 170 ~~~~~~ 175 (210)
.+.+..
T Consensus 206 ~l~~~~ 211 (308)
T 1h6u_A 206 QISDVS 211 (308)
T ss_dssp CCCBCG
T ss_pred ccCccc
Confidence 765433
No 71
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.51 E-value=2.9e-14 Score=114.73 Aligned_cols=144 Identities=15% Similarity=0.145 Sum_probs=83.1
Q ss_pred CcceeCCCCCccccchhhhcccCC-cccc---cCCCCCC--CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCE
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHR---LGESPPM--LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGW 87 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~---~~~~~~~--~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~ 87 (210)
.+.|++++|+++.++.... ++++ ..+. ..+..++ ...+++|+.|++++|.++.++ ..+..+++|+.
T Consensus 83 l~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp-------~~l~~l~~L~~ 154 (328)
T 4fcg_A 83 RVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALP-------ASIASLNRLRE 154 (328)
T ss_dssp CCEEEEESSCCSSCCSCGG-GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCC-------GGGGGCTTCCE
T ss_pred eeEEEccCCCchhcChhhh-hCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCc-------HHHhcCcCCCE
Confidence 4568888888887776432 2333 1111 1122222 266777888888888888665 45566666666
Q ss_pred EECcCCCCCcCCccccc---------CCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhC
Q psy4162 88 IDLSFNNIKNVDKNMFT---------NFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMI 158 (210)
Q Consensus 88 L~Ls~n~i~~~~~~~~~---------~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l 158 (210)
|++++|++.+..+..+. .+++|+.|++++|.++.++ ..+..+++|+.|++++|.+.+++. .+..+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~N~l~~l~~----~l~~l 228 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP--ASIANLQNLKSLKIRNSPLSALGP----AIHHL 228 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC--GGGGGCTTCCEEEEESSCCCCCCG----GGGGC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch--HhhcCCCCCCEEEccCCCCCcCch----hhccC
Confidence 66666543332222122 3666666666666666554 335666666666666666666555 35566
Q ss_pred cCcccccCCCCCH
Q psy4162 159 PQLVTLDSVFILP 171 (210)
Q Consensus 159 ~~L~~L~l~~~~~ 171 (210)
++|+.|++++|..
T Consensus 229 ~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 229 PKLEELDLRGCTA 241 (328)
T ss_dssp TTCCEEECTTCTT
T ss_pred CCCCEEECcCCcc
Confidence 6666666666543
No 72
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.51 E-value=8.6e-14 Score=120.18 Aligned_cols=146 Identities=19% Similarity=0.131 Sum_probs=102.4
Q ss_pred CcceeCCCCCccccchhhhcccCC-cccccCCCCCC------CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM------LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIG 86 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~------~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~ 86 (210)
...|++++|+++.+.+..|.++++ ..+.+....+. ++++++|+.|++++|.++.+++ ..+..+++|+
T Consensus 59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~------~~~~~l~~L~ 132 (606)
T 3t6q_A 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF------IPLHNQKTLE 132 (606)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGG------SCCTTCTTCC
T ss_pred ceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCc------chhccCCccc
Confidence 456888888888877766665555 22222222211 2677888888888888888755 6677788888
Q ss_pred EEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcC--EEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLR--TLSLYGNPIEKIREYRAVVSTMIPQLVTL 164 (210)
Q Consensus 87 ~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~--~L~l~~n~l~~~~~~~~~~l~~l~~L~~L 164 (210)
.|++++|++..+....+..+++|+.|++++|.++...+ ..++.+++|+ .+++++|.+.++++ ......+|+.|
T Consensus 133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~L~l~~n~l~~~~~----~~~~~~~L~~L 207 (606)
T 3t6q_A 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK-EDMSSLQQATNLSLNLNGNDIAGIEP----GAFDSAVFQSL 207 (606)
T ss_dssp EEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH-HHHHTTTTCCSEEEECTTCCCCEECT----TTTTTCEEEEE
T ss_pred EEECCCCcccccCcccccCCcccCEEEcccCcccccCh-hhhhhhcccceeEEecCCCccCccCh----hHhhhcccccc
Confidence 88888888887653335557888888888888887764 6677777777 78888888887765 23444678888
Q ss_pred cCCCCC
Q psy4162 165 DSVFIL 170 (210)
Q Consensus 165 ~l~~~~ 170 (210)
++.++.
T Consensus 208 ~l~~~~ 213 (606)
T 3t6q_A 208 NFGGTQ 213 (606)
T ss_dssp ECTTCS
T ss_pred ccCCch
Confidence 888776
No 73
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.51 E-value=7e-14 Score=112.24 Aligned_cols=146 Identities=20% Similarity=0.115 Sum_probs=88.9
Q ss_pred CCcceeCCCCCccccchhhhcccCC-cccccCCCCC------C--CCCCCCccEEEccCCccccccCCchhhhhccCCCC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPP------M--LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPD 83 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~------~--~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~ 83 (210)
....|++++|.++.++...+.++++ ..+.+..... . ...+++|+.|++++|.++.++. ..+ +
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~------~~~---~ 192 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ------GLP---P 192 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS------SCC---T
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc------ccc---c
Confidence 4566999999999888876665554 1111211111 1 2556777777777777776653 111 4
Q ss_pred CCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccc
Q psy4162 84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVT 163 (210)
Q Consensus 84 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~ 163 (210)
+|+.|++++|+++.+.+..+..+++|+.|++++|.++..++ ..+..+++|+.|++++|.+..++. .+..+++|+.
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~----~l~~l~~L~~ 267 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKVPG----GLADHKYIQV 267 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCSSCCT----TTTTCSSCCE
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCccCCh----hhccCCCcCE
Confidence 56666666666666655556666666666666666666553 455666666666666666666655 4556666666
Q ss_pred ccCCCCCHH
Q psy4162 164 LDSVFILPS 172 (210)
Q Consensus 164 L~l~~~~~~ 172 (210)
|++++|.+.
T Consensus 268 L~l~~N~i~ 276 (330)
T 1xku_A 268 VYLHNNNIS 276 (330)
T ss_dssp EECCSSCCC
T ss_pred EECCCCcCC
Confidence 666666543
No 74
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.51 E-value=5.1e-14 Score=113.18 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=58.5
Q ss_pred CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcc
Q psy4162 83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLV 162 (210)
Q Consensus 83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~ 162 (210)
++|+.|++++|+++.+++..+..+++|+.|++++|.++..++ ..+..+++|+.|++++|.++.+|. .+..+++|+
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~----~l~~l~~L~ 267 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLSRVPA----GLPDLKLLQ 267 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCCBCCT----TGGGCTTCC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCeecCh----hhhcCccCC
Confidence 456666666666666665556667777777777777777664 556677777777777777776665 466777777
Q ss_pred cccCCCCCHH
Q psy4162 163 TLDSVFILPS 172 (210)
Q Consensus 163 ~L~l~~~~~~ 172 (210)
.|++++|.+.
T Consensus 268 ~L~l~~N~l~ 277 (332)
T 2ft3_A 268 VVYLHTNNIT 277 (332)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCCCC
Confidence 7777777654
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.51 E-value=2.3e-14 Score=121.66 Aligned_cols=105 Identities=23% Similarity=0.184 Sum_probs=66.3
Q ss_pred CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccC
Q psy4162 52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131 (210)
Q Consensus 52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l 131 (210)
+++|+.|++++|+++.+++ ..|..+++|++|++++|+++.++.. .+++|+.|++++|.++..+....++.+
T Consensus 44 l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l 114 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDI------SVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNM 114 (520)
T ss_dssp CTTCCEEECCSSCCCEEEG------GGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGC
T ss_pred cccccEEecCCCccCCcCh------HHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCCccccccchhhhccC
Confidence 3337777777777766654 5666677777777777777666553 566777777777776653211456667
Q ss_pred CCcCEEeeeCCCCCCccchHHHHHHhCcCc--ccccCCCCCH
Q psy4162 132 NSLRTLSLYGNPIEKIREYRAVVSTMIPQL--VTLDSVFILP 171 (210)
Q Consensus 132 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 171 (210)
++|+.|++++|.+... .+..+++| +.|++++|..
T Consensus 115 ~~L~~L~L~~n~l~~~------~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 115 SQLKFLGLSTTHLEKS------SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp TTCCEEEEEESSCCGG------GGGGGTTSCEEEEEEEECTT
T ss_pred CcceEEEecCcccchh------hccccccceeeEEEeecccc
Confidence 7777777777766552 24455555 6677666654
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.50 E-value=2.4e-14 Score=121.06 Aligned_cols=109 Identities=21% Similarity=0.146 Sum_probs=94.1
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccC-CCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTIL-DPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL 128 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 128 (210)
..+++|+.|++++|.+++.++ ..+. .+++|+.|++++|.++.+++ ...+++|+.|++++|.++++++ .+
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~------~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~--~~ 210 (487)
T 3oja_A 141 GCRSRVQYLDLKLNEIDTVNF------AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP--EF 210 (487)
T ss_dssp GGGSSEEEEECTTSCCCEEEG------GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG--GG
T ss_pred cCCCCCCEEECCCCCCCCcCh------HHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH--hH
Confidence 556779999999999998764 5554 68899999999999999865 4468999999999999999874 38
Q ss_pred ccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 129 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 129 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
..+++|+.|++++|.++++|. .+..+++|+.|++++|+..
T Consensus 211 ~~l~~L~~L~Ls~N~l~~lp~----~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 211 QSAAGVTWISLRNNKLVLIEK----ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GGGTTCSEEECTTSCCCEECT----TCCCCTTCCEEECTTCCBC
T ss_pred cCCCCccEEEecCCcCcccch----hhccCCCCCEEEcCCCCCc
Confidence 889999999999999999887 5788899999999999876
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.50 E-value=4.5e-14 Score=112.70 Aligned_cols=114 Identities=16% Similarity=0.023 Sum_probs=53.3
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCC---cccccCCCCccEEEccCCccCcccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD---KNMFTNFPNLKILYLHKNQIEEYLSVF 126 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~ 126 (210)
+.+++|+.|++++|++.+..++. ....+..+++|+.|++++|+++.++ ...+..+++|+.|++++|.+++..+..
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLI--SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHH--HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred ccCCCCCEEECCCCCcCcchHHH--HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 55666777777777654321000 0011244555555555555555321 222234455555555555555543223
Q ss_pred ccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCH
Q psy4162 127 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILP 171 (210)
Q Consensus 127 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~ 171 (210)
.+..+++|+.|++++|.++.+|. .+. ++|+.||+++|.+
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~~ip~----~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLKQVPK----GLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp CCCCCTTCCEEECTTSCCSSCCS----SCC--SEEEEEECCSSCC
T ss_pred hhhhcCCCCEEECCCCccChhhh----hcc--CCceEEECCCCCC
Confidence 33444555555555555554443 111 4455555555544
No 78
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=7.1e-14 Score=102.54 Aligned_cols=105 Identities=17% Similarity=0.163 Sum_probs=94.3
Q ss_pred ccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCc
Q psy4162 55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134 (210)
Q Consensus 55 L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L 134 (210)
-+.+++++|.++.+|. .+. +.|+.|++++|+++.+++..+..+++|+.|++++|+++.+++ ..+..+++|
T Consensus 14 ~~~l~~~~n~l~~iP~-------~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L 83 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPA-------GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT-GVFDKLTQL 83 (174)
T ss_dssp SSEEECCSSCCSSCCS-------CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred CcEEEeCCCCCCccCC-------CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh-hHhCCcchh
Confidence 4789999999999884 222 789999999999999988889999999999999999999986 778899999
Q ss_pred CEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 135 ~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
+.|++++|.++.++. ..+..+++|+.|++++|+..
T Consensus 84 ~~L~L~~N~l~~l~~---~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPR---GAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CEEECCSSCCCCCCT---TTTTTCTTCSEEECCSSCBC
T ss_pred hEEECCCCccceeCH---HHhccccCCCEEEeCCCCcc
Confidence 999999999999987 45889999999999999865
No 79
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.50 E-value=4.4e-14 Score=121.24 Aligned_cols=123 Identities=20% Similarity=0.154 Sum_probs=58.8
Q ss_pred cceeCCCCCccccchhhhcccCCcccc-cCCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEEC
Q psy4162 15 IPLDLSFQQIQSLDKVAVQKLKPNVHR-LGESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDL 90 (210)
Q Consensus 15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~-~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~L 90 (210)
..+++++|+++.+|.....++....+. ..+.... +.++++|+.|++++|.++.+++ ..|..+++|++|++
T Consensus 34 ~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L 107 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF------HVFLFNQDLEYLDV 107 (562)
T ss_dssp CEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT------TTTTTCTTCCEEEC
T ss_pred cEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH------HHhCCCCCCCEEEC
Confidence 569999999999887443211110000 0111111 1444445555555555555443 44445555555555
Q ss_pred cCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCC
Q psy4162 91 SFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146 (210)
Q Consensus 91 s~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~ 146 (210)
++|+++.++.. .+++|+.|++++|.++.++....++++++|+.|++++|.+..
T Consensus 108 s~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 108 SHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp TTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 55555544442 344555555555555443311334455555555555555443
No 80
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=1.6e-13 Score=108.64 Aligned_cols=140 Identities=25% Similarity=0.274 Sum_probs=106.1
Q ss_pred CcceeCCCCCccccchhhhcccCC-cccccCCCCCC----CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM----LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI 88 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L 88 (210)
...|++++|.++.++.. ..+++ ..+.+....+. ...+++|+.|++++|.++.++ .+..+++|+.|
T Consensus 48 L~~L~l~~~~i~~~~~~--~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L~~L 117 (291)
T 1h6t_A 48 IDQIIANNSDIKSVQGI--QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS--------SLKDLKKLKSL 117 (291)
T ss_dssp CCEEECTTSCCCCCTTG--GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG--------GGTTCTTCCEE
T ss_pred ccEEEccCCCcccChhH--hcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCCh--------hhccCCCCCEE
Confidence 35688999999888653 23344 11112222222 367788888888888888764 36777899999
Q ss_pred ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF 168 (210)
Q Consensus 89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~ 168 (210)
++++|+++.++. +..+++|+.|++++|.++.++ .+..+++|+.|++++|.+.+++. +..+++|+.|++++
T Consensus 118 ~L~~n~i~~~~~--l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 118 SLEHNGISDING--LVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSK 187 (291)
T ss_dssp ECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCS
T ss_pred ECCCCcCCCChh--hcCCCCCCEEEccCCcCCcch---hhccCCCCCEEEccCCccccchh-----hcCCCccCEEECCC
Confidence 999999988743 778899999999999988874 37788999999999999998875 78889999999999
Q ss_pred CCHHH
Q psy4162 169 ILPSE 173 (210)
Q Consensus 169 ~~~~~ 173 (210)
|.+.+
T Consensus 188 N~i~~ 192 (291)
T 1h6t_A 188 NHISD 192 (291)
T ss_dssp SCCCB
T ss_pred CcCCC
Confidence 98765
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=2.1e-13 Score=108.69 Aligned_cols=141 Identities=23% Similarity=0.222 Sum_probs=105.5
Q ss_pred CcceeCCCCCccccchhhhcccCC-cccccCCCCC---C-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPP---M-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI 88 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~---~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L 88 (210)
...|++++|.++.++.. ..+++ ..+.+....+ . ...+++|+.|++++|.++.++ .+..+++|+.|
T Consensus 43 L~~L~l~~~~i~~l~~~--~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~l~~L~~L 112 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIEGV--QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--------AIAGLQSIKTL 112 (308)
T ss_dssp CCEEECTTSCCCCCTTG--GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG--------GGTTCTTCCEE
T ss_pred cCEEEeeCCCccCchhh--hccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch--------hhcCCCCCCEE
Confidence 45699999999988753 33444 1112222222 2 377788888888888888764 36677888899
Q ss_pred ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF 168 (210)
Q Consensus 89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~ 168 (210)
++++|+++.+++ +..+++|+.|++++|.++..++ +..+++|+.|++++|.+++++. +..+++|+.|++++
T Consensus 113 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 113 DLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTLKADD 182 (308)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCS
T ss_pred ECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChh-----hcCCCCCCEEECCC
Confidence 999888888765 7888889999999998888764 7788889999999999888765 77888999999988
Q ss_pred CCHHHH
Q psy4162 169 ILPSEK 174 (210)
Q Consensus 169 ~~~~~~ 174 (210)
|.+.+.
T Consensus 183 n~l~~~ 188 (308)
T 1h6u_A 183 NKISDI 188 (308)
T ss_dssp SCCCCC
T ss_pred CccCcC
Confidence 876543
No 82
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=2.1e-16 Score=118.23 Aligned_cols=104 Identities=21% Similarity=0.157 Sum_probs=48.9
Q ss_pred ccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCc
Q psy4162 55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134 (210)
Q Consensus 55 L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L 134 (210)
|+.|++++|.++.++. +..+++|+.|++++|+++.++.. +..+++|+.|++++|.++.++ .+..+++|
T Consensus 50 L~~L~ls~n~l~~l~~--------~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N~l~~l~---~~~~l~~L 117 (198)
T 1ds9_A 50 CKHLALSTNNIEKISS--------LSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASLS---GIEKLVNL 117 (198)
T ss_dssp CSEEECSEEEESCCCC--------HHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEEECCCHH---HHHHHHHS
T ss_pred CCEEECCCCCCccccc--------cccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCCcCCcCC---ccccCCCC
Confidence 5555555555555431 22234555555555555544332 333445555555555555433 13444555
Q ss_pred CEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 135 ~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
+.|++++|.+..++.. ..+..+++|+.|++++|++.
T Consensus 118 ~~L~l~~N~i~~~~~~--~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEI--DKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp SEEEESEEECCCHHHH--HHHTTTTTCSEEEECSCHHH
T ss_pred CEEECCCCcCCchhHH--HHHhcCCCCCEEEecCCccc
Confidence 5555555555544321 13444555555555555443
No 83
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.49 E-value=1.1e-13 Score=118.69 Aligned_cols=63 Identities=24% Similarity=0.284 Sum_probs=30.3
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCC-cccccCCCCccEEEccCCccCc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD-KNMFTNFPNLKILYLHKNQIEE 121 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~~~~L~~L~l~~n~i~~ 121 (210)
.++++|+.|++++|.++.++. . .+++|+.|++++|+++.++ +..++.+++|+.|++++|.++.
T Consensus 97 ~~l~~L~~L~Ls~N~l~~lp~------~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 97 LFNQDLEYLDVSHNRLQNISC------C---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp TTCTTCCEEECTTSCCCEECS------C---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCCCCCEEECCCCcCCccCc------c---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 344555555555555554442 1 3445555555555555433 2234445555555555555443
No 84
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.49 E-value=1e-13 Score=118.70 Aligned_cols=131 Identities=21% Similarity=0.190 Sum_probs=99.1
Q ss_pred CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN 93 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n 93 (210)
...|++++|+++.+++..+.++++ |+.|++++|.++.+++ ..|..+++|+.|++++|
T Consensus 54 L~~L~Ls~n~i~~i~~~~~~~l~~-----------------L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 54 LQVLDLSRCEIQTIEDGAYQSLSH-----------------LSTLILTGNPIQSLAL------GAFSGLSSLQKLVAVET 110 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTT-----------------CCEEECTTCCCCEECT------TTTTTCTTCCEEECTTS
T ss_pred ceEEECCCCcCCccCcccccCchh-----------------CCEEeCcCCcCCccCH------hhhcCcccccccccccc
Confidence 466999999999998887776777 8888888888888776 77888888888888888
Q ss_pred CCCcCCcccccCCCCccEEEccCCccCccc-cccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCc----ccccCCC
Q psy4162 94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYL-SVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQL----VTLDSVF 168 (210)
Q Consensus 94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L----~~L~l~~ 168 (210)
+++.+++..++.+.+|+.|++++|.++.+. + ..++++++|+.|++++|.+..++. ..+..+++| ..|++++
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYC---TDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECTTSCCCEECG---GGGHHHHTCTTCCCEEECTT
T ss_pred ccccCCCccccccccccEEecCCCccceecCh-hhhcccCCCCEEeCcCCccceecH---HHccchhccchhhhhcccCC
Confidence 888877755778888888888888887642 2 567778888888888888877654 234444444 5566666
Q ss_pred CCH
Q psy4162 169 ILP 171 (210)
Q Consensus 169 ~~~ 171 (210)
|.+
T Consensus 187 n~l 189 (570)
T 2z63_A 187 NPM 189 (570)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 85
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.48 E-value=1.6e-13 Score=110.34 Aligned_cols=85 Identities=24% Similarity=0.304 Sum_probs=50.4
Q ss_pred CCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccccc
Q psy4162 51 GRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR 130 (210)
Q Consensus 51 ~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 130 (210)
.+++|+.|++++|.++.+.+ ..|..+++|+.|++++|+++.++...+ ++|+.|++++|.++.+++ ..+.+
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~-~~~~~ 145 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHE------KAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPK-GVFSG 145 (332)
T ss_dssp TCTTCCEEECCSSCCCEECG------GGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCS-GGGSS
T ss_pred CCCCCcEEECCCCccCccCH------hHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCH-hHhCC
Confidence 34446666666666666544 556666666666666666665555422 556666666666665553 44555
Q ss_pred CCCcCEEeeeCCCCC
Q psy4162 131 VNSLRTLSLYGNPIE 145 (210)
Q Consensus 131 l~~L~~L~l~~n~l~ 145 (210)
+++|+.|++++|.+.
T Consensus 146 l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 146 LRNMNCIEMGGNPLE 160 (332)
T ss_dssp CSSCCEEECCSCCCB
T ss_pred CccCCEEECCCCccc
Confidence 666666666666554
No 86
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.48 E-value=8.7e-14 Score=124.82 Aligned_cols=153 Identities=20% Similarity=0.144 Sum_probs=94.9
Q ss_pred CCCCCcceeCCCCCccccchhhhcccCC-cccccCCC----CC-C--CCCCCCccEEEccCCccccccCCchhhhhccCC
Q psy4162 10 DPEFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGES----PP-M--LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILD 81 (210)
Q Consensus 10 ~~~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~----~~-~--~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~ 81 (210)
.|.....||+++|.++.+.+..+.++++ ..+.++.. .. + +..+++|+.|++++|.++.+.+ ..|..
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p------~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP------DAFQG 95 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT------TSSCS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH------hHccC
Confidence 4456677999999999888777776666 11111111 11 1 3666677777777777776655 66677
Q ss_pred CCCCCEEECcCCCCCcCC--cccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhC-
Q psy4162 82 PDLIGWIDLSFNNIKNVD--KNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMI- 158 (210)
Q Consensus 82 l~~L~~L~Ls~n~i~~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l- 158 (210)
+++|+.|++++|.++... ...+..+++|+.|++++|.++.......++++++|+.|++++|.+..... ..+..+
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~---~~l~~l~ 172 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE---HELEPLQ 172 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS---GGGHHHH
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH---HHccccc
Confidence 777777777777766522 22366677777777777777665422346667777777777777765433 133333
Q ss_pred -cCcccccCCCCCH
Q psy4162 159 -PQLVTLDSVFILP 171 (210)
Q Consensus 159 -~~L~~L~l~~~~~ 171 (210)
++|+.|+++.|..
T Consensus 173 ~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 173 GKTLSFFSLAANSL 186 (844)
T ss_dssp HCSSCCCEECCSBS
T ss_pred CCccceEECCCCcc
Confidence 5677777766654
No 87
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=9.6e-14 Score=98.90 Aligned_cols=111 Identities=16% Similarity=0.192 Sum_probs=94.1
Q ss_pred CCccEEEccCCccc--cccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccccc
Q psy4162 53 YDTRSLWLSHNKIS--LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR 130 (210)
Q Consensus 53 ~~L~~L~ls~n~l~--~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 130 (210)
++++.|++++|.++ .++ ..+..+++|+.|++++|+++.+ ..+..+++|+.|++++|.+++..+ ..+..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~-------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~ 86 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLE-------GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE-VLAEK 86 (149)
T ss_dssp GGCSEEECTTCBCBTTBCC-------SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH-HHHHH
T ss_pred ccCeEEEccCCcCChhHHH-------HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH-HHhhh
Confidence 34999999999998 555 6678889999999999999998 348899999999999999998443 56777
Q ss_pred CCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162 131 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ 175 (210)
Q Consensus 131 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 175 (210)
+++|+.|++++|.+.+++.. ..+..+++|+.|++++|.+....
T Consensus 87 l~~L~~L~ls~N~i~~~~~~--~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTI--EPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHH--GGGGGCTTCCEEECTTCGGGGST
T ss_pred CCCCCEEECCCCcCCChHHH--HHHhhCCCCCEEeCcCCcccchH
Confidence 99999999999999987521 25899999999999999876543
No 88
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.47 E-value=2.1e-13 Score=115.75 Aligned_cols=151 Identities=15% Similarity=0.064 Sum_probs=112.0
Q ss_pred CCcceeCCCCCccccchhhhcccCC-cccccCCCCCC--------CCCCCCccEEEccCCcccc-ccCCchhhhhccCCC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM--------LVGRYDTRSLWLSHNKISL-VYGLDSLVHRTILDP 82 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~--------~~~l~~L~~L~ls~n~l~~-~~~l~~~~~~~~~~l 82 (210)
....|++++|+++...+..+..+++ ..+.+.-..+. ...+++|+.|++++|.+.. ++. ..+..+
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~------~~~~~l 398 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK------GDCSWT 398 (520)
T ss_dssp CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG------CSCCCC
T ss_pred cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc------chhccC
Confidence 4566999999998855555554444 11111111111 1577889999999999888 664 567788
Q ss_pred CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcc
Q psy4162 83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLV 162 (210)
Q Consensus 83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~ 162 (210)
++|+.|++++|+++...+..+. ++|+.|++++|+++.++ ..+..+++|+.|++++|+++.++. ..+..+++|+
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip--~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~ 471 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIP--KQVVKLEALQELNVASNQLKSVPD---GIFDRLTSLQ 471 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCC--GGGGGCTTCCEEECCSSCCCCCCT---TTTTTCTTCC
T ss_pred ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccc--hhhhcCCCCCEEECCCCcCCccCH---HHhccCCccc
Confidence 8999999999988765443232 68999999999999887 345589999999999999999987 3488899999
Q ss_pred cccCCCCCHHHHHH
Q psy4162 163 TLDSVFILPSEKQE 176 (210)
Q Consensus 163 ~L~l~~~~~~~~~~ 176 (210)
.|++++|+......
T Consensus 472 ~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 472 KIWLHTNPWDCSCP 485 (520)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEECcCCCCcccCC
Confidence 99999998755443
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.47 E-value=4e-14 Score=112.99 Aligned_cols=117 Identities=16% Similarity=0.074 Sum_probs=75.1
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCC-----CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcc--
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDP-----DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEY-- 122 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l-----~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~-- 122 (210)
..+++|+.|++++|.+++.+ ..+..+ ++|+.|++++|+++.+++..+..+++|+.|++++|.+.+.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~-------~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRD-------AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSS-------SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred hcCCCccEEEccCCCCcchh-------HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence 45566777888777777763 222222 6777777777777777766677777777777777776542
Q ss_pred -ccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162 123 -LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE 173 (210)
Q Consensus 123 -~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 173 (210)
+....+..+++|+.|++++|.++.++......+..+++|+.|++++|.+..
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 110122667777777777777775544333345566777777777776543
No 90
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.47 E-value=9e-14 Score=111.08 Aligned_cols=106 Identities=22% Similarity=0.194 Sum_probs=70.2
Q ss_pred CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS 133 (210)
Q Consensus 54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~ 133 (210)
+|+.|++++|.+++..+ ..+..+. |+.|++++|+++...+..+..+++|+.|++++|.++...+ .+..+++
T Consensus 175 ~L~~L~L~~N~l~~~~~------~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~ 245 (313)
T 1ogq_A 175 LFTSMTISRNRLTGKIP------PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKN 245 (313)
T ss_dssp TCCEEECCSSEEEEECC------GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--GCCCCTT
T ss_pred cCcEEECcCCeeeccCC------hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC--cccccCC
Confidence 45555555555543332 4455554 6666666666666666666777777777777777776553 3667778
Q ss_pred cCEEeeeCCCCC-CccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 134 LRTLSLYGNPIE-KIREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 134 L~~L~l~~n~l~-~~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
|+.|++++|.+. .++. .+..+++|+.|++++|.+.
T Consensus 246 L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 246 LNGLDLRNNRIYGTLPQ----GLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp CCEEECCSSCCEECCCG----GGGGCTTCCEEECCSSEEE
T ss_pred CCEEECcCCcccCcCCh----HHhcCcCCCEEECcCCccc
Confidence 888888888887 4454 5777888888888888654
No 91
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.46 E-value=3.6e-13 Score=108.83 Aligned_cols=110 Identities=18% Similarity=0.227 Sum_probs=98.0
Q ss_pred cceeCCCC-CccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccC-CccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162 15 IPLDLSFQ-QIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSH-NKISLVYGLDSLVHRTILDPDLIGWIDLSF 92 (210)
Q Consensus 15 ~~L~ls~n-~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~ 92 (210)
..++++++ +|+.+|. +..+++ |+.|+|++ |.|+.+++ ..|..+++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~-----------------L~~L~l~~~n~l~~~~~------~~~~~l~~L~~L~l~~ 65 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAEN-----------------LTELYIENQQHLQHLEL------RDLRGLGELRNLTIVK 65 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSC-----------------CSEEECCSCSSCCEECG------GGSCSCCCCSEEECCS
T ss_pred CEEEcCCCCCCCccCC--CCCCCC-----------------eeEEEccCCCCCCCcCh------hHhccccCCCEEECCC
Confidence 45899998 9999998 665666 99999996 99999987 8899999999999999
Q ss_pred CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchH
Q psy4162 93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYR 151 (210)
Q Consensus 93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 151 (210)
|+++++++..|..+++|+.|+|++|.++.+++ ..+..++ |+.|++.+|++.+.+..+
T Consensus 66 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~c~l~ 122 (347)
T 2ifg_A 66 SGLRFVAPDAFHFTPRLSRLNLSFNALESLSW-KTVQGLS-LQELVLSGNPLHCSCALR 122 (347)
T ss_dssp SCCCEECTTGGGSCSCCCEEECCSSCCSCCCS-TTTCSCC-CCEEECCSSCCCCCGGGH
T ss_pred CccceeCHHHhcCCcCCCEEeCCCCccceeCH-HHcccCC-ceEEEeeCCCccCCCccH
Confidence 99999999889999999999999999999986 6677666 999999999999877643
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=3.1e-13 Score=117.07 Aligned_cols=139 Identities=23% Similarity=0.235 Sum_probs=86.1
Q ss_pred CcceeCCCCCccccchhhhcccCC-cccccCCC---CCC-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGES---PPM-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI 88 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~---~~~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L 88 (210)
...|++++|+|+.+++ +..+++ ..+.+... .+. ...+++|+.|+|++|.+..++ .+..+++|+.|
T Consensus 67 L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~--------~l~~l~~L~~L 136 (605)
T 1m9s_A 67 VTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN--------GLVHLPQLESL 136 (605)
T ss_dssp CCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG--------GGGGCTTCSEE
T ss_pred CCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc--------cccCCCccCEE
Confidence 3446677777666665 223333 11111111 112 255666666666666666643 24556777777
Q ss_pred ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF 168 (210)
Q Consensus 89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~ 168 (210)
+|++|+++.+. .+..+++|+.|+|++|.+...++ +..+++|+.|+|++|.+++++. +..+++|+.|++++
T Consensus 137 ~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~~-----l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 137 YLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRA-----LAGLKNLDVLELFS 206 (605)
T ss_dssp ECCSSCCCCCG--GGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCGG-----GTTCTTCSEEECCS
T ss_pred ECCCCccCCch--hhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCChH-----HccCCCCCEEEccC
Confidence 77777777762 26677777777777777776653 6677777777777777777643 66777777777777
Q ss_pred CCHH
Q psy4162 169 ILPS 172 (210)
Q Consensus 169 ~~~~ 172 (210)
|++.
T Consensus 207 N~l~ 210 (605)
T 1m9s_A 207 QECL 210 (605)
T ss_dssp EEEE
T ss_pred CcCc
Confidence 7653
No 93
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.46 E-value=4.3e-13 Score=114.47 Aligned_cols=112 Identities=15% Similarity=0.142 Sum_probs=76.7
Q ss_pred CCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCccc-----------------ccCCCCccEEE
Q psy4162 51 GRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNM-----------------FTNFPNLKILY 113 (210)
Q Consensus 51 ~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-----------------~~~~~~L~~L~ 113 (210)
.+++|+.|++++|+++.++ ..+..+++|+.|++++|+++.++... ...+++|+.|+
T Consensus 385 ~l~~L~~L~Ls~N~l~~lp-------~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~ 457 (549)
T 2z81_A 385 TLKNLTSLDISRNTFHPMP-------DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELY 457 (549)
T ss_dssp GCTTCCEEECTTCCCCCCC-------SCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEE
T ss_pred cCCCCCEEECCCCCCccCC-------hhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEE
Confidence 3445666666666555544 23344444444444444444333211 13578899999
Q ss_pred ccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ 175 (210)
Q Consensus 114 l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 175 (210)
+++|+++.++. ...+++|+.|++++|.+++++. ..+..+++|+.|++++|+.....
T Consensus 458 Ls~N~l~~ip~---~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 458 ISRNKLKTLPD---ASLFPVLLVMKISRNQLKSVPD---GIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CCSSCCSSCCC---GGGCTTCCEEECCSSCCCCCCT---TGGGGCTTCCEEECCSSCBCCCH
T ss_pred CCCCccCcCCC---cccCccCCEEecCCCccCCcCH---HHHhcCcccCEEEecCCCccCCC
Confidence 99999988774 4578999999999999998876 36889999999999999865443
No 94
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.46 E-value=2e-13 Score=109.10 Aligned_cols=103 Identities=17% Similarity=-0.015 Sum_probs=64.9
Q ss_pred ccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCc
Q psy4162 55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134 (210)
Q Consensus 55 L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L 134 (210)
|+.|++++|.++...+ ..+..+++|+.|++++|+++...+. +..+++|+.|++++|.+++..+ ..+..+++|
T Consensus 199 L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L 270 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDAS------VLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFL 270 (313)
T ss_dssp CSEEECCSSEEEECCG------GGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCC-GGGGGCTTC
T ss_pred ccEEECcCCcccCcCC------HHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCC-hHHhcCcCC
Confidence 6667777776666544 5666666677777777766655544 5556667777777776664433 556666667
Q ss_pred CEEeeeCCCCCC-ccchHHHHHHhCcCcccccCCCCC
Q psy4162 135 RTLSLYGNPIEK-IREYRAVVSTMIPQLVTLDSVFIL 170 (210)
Q Consensus 135 ~~L~l~~n~l~~-~~~~~~~~l~~l~~L~~L~l~~~~ 170 (210)
+.|++++|++++ +|. ...+++|+.+++.+|+
T Consensus 271 ~~L~Ls~N~l~~~ip~-----~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 271 HSLNVSFNNLCGEIPQ-----GGNLQRFDVSAYANNK 302 (313)
T ss_dssp CEEECCSSEEEEECCC-----STTGGGSCGGGTCSSS
T ss_pred CEEECcCCcccccCCC-----CccccccChHHhcCCC
Confidence 777777776663 333 2556666666666665
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=1.1e-13 Score=103.37 Aligned_cols=110 Identities=11% Similarity=0.125 Sum_probs=90.7
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 129 (210)
..+++|+.|++++|.++.++ .+..+++|+.|++++|+++...+..+..+++|+.|++++|.++.... ..+.
T Consensus 63 ~~l~~L~~L~l~~n~~~~~~--------~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~ 133 (197)
T 4ezg_A 63 EYAHNIKDLTINNIHATNYN--------PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKIN 133 (197)
T ss_dssp GGCTTCSEEEEESCCCSCCG--------GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH-HHHT
T ss_pred hcCCCCCEEEccCCCCCcch--------hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhH-HHHh
Confidence 66788888888888776653 46678899999999999987555558889999999999999987553 6688
Q ss_pred cCCCcCEEeeeCCC-CCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162 130 RVNSLRTLSLYGNP-IEKIREYRAVVSTMIPQLVTLDSVFILPSE 173 (210)
Q Consensus 130 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 173 (210)
.+++|+.|++++|. +..++. +..+++|+.|++++|.+.+
T Consensus 134 ~l~~L~~L~L~~n~~i~~~~~-----l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 134 TLPKVNSIDLSYNGAITDIMP-----LKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp TCSSCCEEECCSCTBCCCCGG-----GGGCSSCCEEECTTBCCCC
T ss_pred hCCCCCEEEccCCCCccccHh-----hcCCCCCCEEECCCCCCcC
Confidence 89999999999998 887764 7889999999999988755
No 96
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.3e-13 Score=100.27 Aligned_cols=111 Identities=21% Similarity=0.206 Sum_probs=94.4
Q ss_pred CCccEEEccCCccc--cccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccccc
Q psy4162 53 YDTRSLWLSHNKIS--LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR 130 (210)
Q Consensus 53 ~~L~~L~ls~n~l~--~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 130 (210)
++|+.|++++|.++ .++ ..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+....+ ..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~-------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~ 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIE-------GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD-MLAEK 93 (168)
T ss_dssp TSCSEEECCSCBCBTTBCS-------SCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-HHHHH
T ss_pred ccCCEEECCCCCCChhhHH-------HHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-HHHhh
Confidence 45999999999998 666 4567789999999999999998 348889999999999999998543 66777
Q ss_pred CCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162 131 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ 175 (210)
Q Consensus 131 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 175 (210)
+++|+.|++++|.+++++.. ..+..+++|+.|++++|.+.+..
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~--~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTL--EPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGG--GGGSSCSCCCEEECCSSGGGTST
T ss_pred CCCCCEEeccCCccCcchhH--HHHhcCCCCCEEEeeCCcCcchH
Confidence 99999999999999997631 25888999999999999876543
No 97
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.45 E-value=2.6e-13 Score=109.11 Aligned_cols=104 Identities=17% Similarity=0.100 Sum_probs=50.5
Q ss_pred CCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCC
Q psy4162 53 YDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVN 132 (210)
Q Consensus 53 ~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~ 132 (210)
++|+.|++++|.++.++ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+ ..+..++
T Consensus 206 ~~L~~L~L~~N~l~~l~-------~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~ 277 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSALG-------PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLT 277 (328)
T ss_dssp TTCCEEEEESSCCCCCC-------GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCT
T ss_pred CCCCEEEccCCCCCcCc-------hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCC
Confidence 33555555555555443 234444555555555554444444334555555555555554443332 3345555
Q ss_pred CcCEEeeeCCCCCC-ccchHHHHHHhCcCcccccCCC
Q psy4162 133 SLRTLSLYGNPIEK-IREYRAVVSTMIPQLVTLDSVF 168 (210)
Q Consensus 133 ~L~~L~l~~n~l~~-~~~~~~~~l~~l~~L~~L~l~~ 168 (210)
+|+.|++++|++.+ +|. .+..+++|+.+++..
T Consensus 278 ~L~~L~L~~n~~~~~iP~----~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPS----LIAQLPANCIILVPP 310 (328)
T ss_dssp TCCEEECTTCTTCCCCCG----GGGGSCTTCEEECCG
T ss_pred CCCEEeCCCCCchhhccH----HHhhccCceEEeCCH
Confidence 55555555544432 333 455555555554443
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.45 E-value=7.8e-14 Score=111.17 Aligned_cols=83 Identities=19% Similarity=0.114 Sum_probs=44.2
Q ss_pred CCCCCCCEEECcCCCCCcCCcccccCC---CCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHH
Q psy4162 80 LDPDLIGWIDLSFNNIKNVDKNMFTNF---PNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVST 156 (210)
Q Consensus 80 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~---~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 156 (210)
..+++|+.|++++|+++...+..+..+ ++|+.|++++|+++.++. . + .++|+.|++++|.+++++. +.
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~-~-~--~~~L~~L~Ls~N~l~~~~~-----~~ 291 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK-G-L--PAKLRVLDLSSNRLNRAPQ-----PD 291 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS-C-C--CSCCSCEECCSCCCCSCCC-----TT
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh-h-h--cCCCCEEECCCCcCCCCch-----hh
Confidence 344555666666666555532223333 456666666666655542 1 1 1456666666666665543 34
Q ss_pred hCcCcccccCCCCCH
Q psy4162 157 MIPQLVTLDSVFILP 171 (210)
Q Consensus 157 ~l~~L~~L~l~~~~~ 171 (210)
.+++|+.|++++|++
T Consensus 292 ~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 292 ELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCCCCSCEECSSTTT
T ss_pred hCCCccEEECcCCCC
Confidence 556666666666654
No 99
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=2.2e-13 Score=99.85 Aligned_cols=112 Identities=23% Similarity=0.188 Sum_probs=93.7
Q ss_pred CCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccccc
Q psy4162 51 GRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR 130 (210)
Q Consensus 51 ~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 130 (210)
.+.+|+.|++++|.++.++.+ ....++|+.|++++|.++.+. .+..+++|+.|++++|.++.+++ ..+..
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~-------~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~ 86 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENL-------GATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGE-GLDQA 86 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCG-------GGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECS-CHHHH
T ss_pred CcCCceEEEeeCCCCchhHHh-------hhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCc-chhhc
Confidence 344599999999999988642 222358999999999999983 38899999999999999999875 55689
Q ss_pred CCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHH
Q psy4162 131 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEK 174 (210)
Q Consensus 131 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 174 (210)
+++|+.|++++|.+..++.. ..+..+++|+.|++++|++.+.
T Consensus 87 l~~L~~L~L~~N~i~~~~~~--~~l~~l~~L~~L~l~~N~i~~~ 128 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDL--DPLASLKSLTYLCILRNPVTNK 128 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGG--GGGGGCTTCCEEECCSSGGGGS
T ss_pred CCCCCEEECCCCcCCcchhh--HhhhcCCCCCEEEecCCCCCCc
Confidence 99999999999999988752 2478899999999999988643
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.45 E-value=6.1e-14 Score=111.79 Aligned_cols=90 Identities=16% Similarity=0.083 Sum_probs=38.5
Q ss_pred CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCc---CC-cccccCCCCccEEEccCCccCccccc--
Q psy4162 52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKN---VD-KNMFTNFPNLKILYLHKNQIEEYLSV-- 125 (210)
Q Consensus 52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~---~~-~~~~~~~~~L~~L~l~~n~i~~~~~~-- 125 (210)
+++|+.|++++|.+..+++ ..|..+++|+.|++++|++.+ ++ ...+..+++|+.|++++|.++..+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 217 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSC------EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA 217 (310)
T ss_dssp CSCCCEEEEECCSSCCCCT------TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhH------HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH
Confidence 4444444444444444443 444444445555555554432 11 11123344455555555544433310
Q ss_pred cccccCCCcCEEeeeCCCCCCc
Q psy4162 126 FVLRRVNSLRTLSLYGNPIEKI 147 (210)
Q Consensus 126 ~~~~~l~~L~~L~l~~n~l~~~ 147 (210)
..++.+++|+.|++++|.+.+.
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCC
T ss_pred HHHhcCCCCCEEECCCCCCCcc
Confidence 0123444555555555555443
No 101
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=1.1e-13 Score=122.25 Aligned_cols=111 Identities=17% Similarity=0.127 Sum_probs=98.1
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 129 (210)
..+..|+.|+|++|.+..++ ..+..+++|+.|+|++|.++.++.. +..+++|+.|+|++|.++.++ ..++
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~-------~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp--~~~~ 290 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNIS-------ANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHNRLTSLP--AELG 290 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCC-------GGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTSCCSSCC--SSGG
T ss_pred ccCCCCcEEECCCCCCCCCC-------hhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCCcCCccC--hhhc
Confidence 77888999999999999887 3444789999999999999988765 789999999999999999886 5688
Q ss_pred cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHH
Q psy4162 130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEK 174 (210)
Q Consensus 130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 174 (210)
.+++|+.|+|++|.++.+|. .+..+++|+.|++++|.+...
T Consensus 291 ~l~~L~~L~L~~N~l~~lp~----~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLPW----EFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp GGTTCSEEECCSSCCCCCCS----STTSCTTCCCEECTTSCCCSH
T ss_pred CCCCCCEEECCCCCCCccCh----hhhcCCCccEEeCCCCccCCC
Confidence 99999999999999999987 589999999999999987643
No 102
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.44 E-value=9.2e-13 Score=106.21 Aligned_cols=144 Identities=20% Similarity=0.260 Sum_probs=113.2
Q ss_pred CCcceeCCCCCccccchhhhcccCC-cccccCCCCCC----CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCE
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM----LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGW 87 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~ 87 (210)
....|++++|.++.++.. ..++. ..+.+...... ...+++|+.|++++|.++.++ . +..+++|+.
T Consensus 178 ~L~~L~l~~n~l~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~-------~-~~~l~~L~~ 247 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS-------P-LANLSQLTW 247 (347)
T ss_dssp TCSEEECTTSCCCCCGGG--GGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-------G-GTTCTTCCE
T ss_pred CCCEEEccCCcccccccc--cCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCc-------c-hhcCCCCCE
Confidence 356799999999998873 33344 11222222222 267889999999999998876 3 677899999
Q ss_pred EECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCC
Q psy4162 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV 167 (210)
Q Consensus 88 L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~ 167 (210)
|++++|.++.++. +..+++|+.|++++|.++.++ .+..+++|+.|++++|++.+... ..+..+++|+.|+++
T Consensus 248 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 248 LEIGTNQISDINA--VKDLTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNEDM---EVIGGLTNLTTLFLS 319 (347)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCGGGH---HHHHTCTTCSEEECC
T ss_pred EECCCCccCCChh--HhcCCCcCEEEccCCccCCCh---hhcCCCCCCEEECcCCcCCCcCh---hHhhccccCCEEEcc
Confidence 9999999998743 788999999999999998875 37789999999999999987765 478999999999999
Q ss_pred CCCHHHH
Q psy4162 168 FILPSEK 174 (210)
Q Consensus 168 ~~~~~~~ 174 (210)
+|++.+.
T Consensus 320 ~n~l~~~ 326 (347)
T 4fmz_A 320 QNHITDI 326 (347)
T ss_dssp SSSCCCC
T ss_pred CCccccc
Confidence 9987553
No 103
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.42 E-value=6.1e-13 Score=118.22 Aligned_cols=149 Identities=17% Similarity=0.067 Sum_probs=113.8
Q ss_pred CCcceeCCCCCccccchhhhcccCC-cccccCCCC----CC--CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESP----PM--LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI 85 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~----~~--~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L 85 (210)
....|++++|.++...+..+.++++ ..+.+.... .+ ...+++|+.|++++|.+.+..+ ..+..+++|
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p------~~~~~l~~L 468 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP------QELMYVKTL 468 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC------GGGGGCTTC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC------HHHcCCCCc
Confidence 3567999999998666655555544 111111111 11 2667889999999998886655 778888999
Q ss_pred CEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCC-ccchHHHHHHhCcCcccc
Q psy4162 86 GWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK-IREYRAVVSTMIPQLVTL 164 (210)
Q Consensus 86 ~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~l~~L~~L 164 (210)
+.|++++|++++..+..+..+++|+.|++++|++++..+ ..++.+++|+.|++++|.+.+ +|. .+..+++|+.|
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L 543 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPA----ELGDCRSLIWL 543 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEEECCG----GGGGCTTCCEE
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC-hHHhcCCCCCEEECCCCcccCcCCH----HHcCCCCCCEE
Confidence 999999999987777668889999999999999986655 778889999999999999985 454 68899999999
Q ss_pred cCCCCCHH
Q psy4162 165 DSVFILPS 172 (210)
Q Consensus 165 ~l~~~~~~ 172 (210)
++++|...
T Consensus 544 ~Ls~N~l~ 551 (768)
T 3rgz_A 544 DLNTNLFN 551 (768)
T ss_dssp ECCSSEEE
T ss_pred ECCCCccC
Confidence 99988754
No 104
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.42 E-value=1.7e-13 Score=109.57 Aligned_cols=144 Identities=17% Similarity=0.108 Sum_probs=112.7
Q ss_pred CCcceeCCCCCccccchhhhcccCCcccccCCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEE
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWID 89 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~ 89 (210)
....|++++|.++.++... .+.. +.+....+. ...+++|+.|++++|+++.+++ ..+..+++|+.|+
T Consensus 81 ~L~~L~Ls~n~l~~l~~~~--~L~~--L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~------~~~~~l~~L~~L~ 150 (317)
T 3o53_A 81 TLRTLDLNNNYVQELLVGP--SIET--LHAANNNISRVSCSRGQGKKNIYLANNKITMLRD------LDEGCRSRVQYLD 150 (317)
T ss_dssp TCCEEECCSSEEEEEEECT--TCCE--EECCSSCCSEEEECCCSSCEEEECCSSCCCSGGG------BCTGGGSSEEEEE
T ss_pred CCCEEECcCCccccccCCC--CcCE--EECCCCccCCcCccccCCCCEEECCCCCCCCccc------hhhhccCCCCEEE
Confidence 3456999999998877431 1111 112222222 2567889999999999999876 6788889999999
Q ss_pred CcCCCCCcCCcccc-cCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162 90 LSFNNIKNVDKNMF-TNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF 168 (210)
Q Consensus 90 Ls~n~i~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~ 168 (210)
+++|+++.+.+..+ ..+++|+.|++++|.++.++. ...+++|+.|++++|.++.++. .+..+++|+.|++++
T Consensus 151 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~----~~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---QVVFAKLKTLDLSSNKLAFMGP----EFQSAAGVTWISLRN 223 (317)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC---CCCCTTCCEEECCSSCCCEECG----GGGGGTTCSEEECTT
T ss_pred CCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc---ccccccCCEEECCCCcCCcchh----hhcccCcccEEECcC
Confidence 99999999866545 468999999999999998864 3358999999999999999887 488899999999999
Q ss_pred CCHHH
Q psy4162 169 ILPSE 173 (210)
Q Consensus 169 ~~~~~ 173 (210)
|.+.+
T Consensus 224 N~l~~ 228 (317)
T 3o53_A 224 NKLVL 228 (317)
T ss_dssp SCCCE
T ss_pred Ccccc
Confidence 98753
No 105
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=1.8e-13 Score=115.71 Aligned_cols=144 Identities=17% Similarity=0.106 Sum_probs=113.6
Q ss_pred CCcceeCCCCCccccchhhhcccCCcccccCCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEE
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWID 89 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~ 89 (210)
....|++++|.|+.++.. .++.. +.+....+. ...+++|+.|++++|.++.+++ ..+..+++|+.|+
T Consensus 81 ~L~~L~Ls~N~l~~l~~~--~~L~~--L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~ 150 (487)
T 3oja_A 81 TLRTLDLNNNYVQELLVG--PSIET--LHAANNNISRVSCSRGQGKKNIYLANNKITMLRD------LDEGCRSRVQYLD 150 (487)
T ss_dssp TCCEEECCSSEEEEEEEC--TTCCE--EECCSSCCCCEEECCCSSCEEEECCSSCCCSGGG------BCGGGGSSEEEEE
T ss_pred CCCEEEecCCcCCCCCCC--CCcCE--EECcCCcCCCCCccccCCCCEEECCCCCCCCCCc------hhhcCCCCCCEEE
Confidence 345699999999887754 11111 112222222 2567889999999999999876 6788889999999
Q ss_pred CcCCCCCcCCccccc-CCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162 90 LSFNNIKNVDKNMFT-NFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF 168 (210)
Q Consensus 90 Ls~n~i~~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~ 168 (210)
+++|.++++.+..+. .+++|+.|++++|.+++.++ ...+++|+.|++++|.++++++ .+..+++|+.|++++
T Consensus 151 Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~----~~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---QVVFAKLKTLDLSSNKLAFMGP----EFQSAAGVTWISLRN 223 (487)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC---CCCCTTCCEEECCSSCCCEECG----GGGGGTTCSEEECTT
T ss_pred CCCCCCCCcChHHHhhhCCcccEEecCCCccccccc---cccCCCCCEEECCCCCCCCCCH----hHcCCCCccEEEecC
Confidence 999999997665565 78999999999999998864 3468999999999999999987 588999999999999
Q ss_pred CCHHH
Q psy4162 169 ILPSE 173 (210)
Q Consensus 169 ~~~~~ 173 (210)
|.+..
T Consensus 224 N~l~~ 228 (487)
T 3oja_A 224 NKLVL 228 (487)
T ss_dssp SCCCE
T ss_pred CcCcc
Confidence 98653
No 106
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.41 E-value=8.3e-13 Score=117.37 Aligned_cols=148 Identities=18% Similarity=0.067 Sum_probs=116.5
Q ss_pred CCcceeCCCCCccccchhhhcc--cCCcccccCCCC------CC--CCCCCCccEEEccCCccccccCCchhhhhccCCC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQK--LKPNVHRLGESP------PM--LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDP 82 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~--l~~~~~~~~~~~------~~--~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l 82 (210)
....|++++|.++...+..+.. +++ +..+.+.. .+ ...+++|+.|++++|.+++..+ ..+..+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p------~~l~~l 441 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP------SSLGSL 441 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCC-CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC------GGGGGC
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCC-ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc------HHHhcC
Confidence 3567999999997533332221 111 11222221 11 3778899999999999997766 788899
Q ss_pred CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCC-ccchHHHHHHhCcCc
Q psy4162 83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK-IREYRAVVSTMIPQL 161 (210)
Q Consensus 83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~l~~L 161 (210)
++|+.|++++|++.+..+..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|++.+ +|. .+..+++|
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L 516 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP-SGLSNCTNLNWISLSNNRLTGEIPK----WIGRLENL 516 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTC
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC-HHHhcCCCCCEEEccCCccCCcCCh----HHhcCCCC
Confidence 999999999999998777778899999999999999997665 778999999999999999995 454 68999999
Q ss_pred ccccCCCCCHH
Q psy4162 162 VTLDSVFILPS 172 (210)
Q Consensus 162 ~~L~l~~~~~~ 172 (210)
+.|++++|...
T Consensus 517 ~~L~L~~N~l~ 527 (768)
T 3rgz_A 517 AILKLSNNSFS 527 (768)
T ss_dssp CEEECCSSCCE
T ss_pred CEEECCCCccc
Confidence 99999999875
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=1.3e-12 Score=113.15 Aligned_cols=140 Identities=26% Similarity=0.274 Sum_probs=104.1
Q ss_pred CcceeCCCCCccccchhhhcccCC-cccccCCCCC---C-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPP---M-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI 88 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~---~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L 88 (210)
...|+++.|.+..++.. ..+++ ..+.+.-..+ . ...+++|+.|+|++|.+..++ .+..+++|+.|
T Consensus 45 L~~L~l~~n~i~~l~~l--~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~--------~l~~l~~L~~L 114 (605)
T 1m9s_A 45 IDQIIANNSDIKSVQGI--QYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS--------SLKDLKKLKSL 114 (605)
T ss_dssp CCCCBCTTCCCCCCTTG--GGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT--------TSTTCTTCCEE
T ss_pred CCEEECcCCCCCCChHH--ccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh--------hhccCCCCCEE
Confidence 34588999999888753 33444 1111221112 2 367778888888888887754 36667889999
Q ss_pred ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF 168 (210)
Q Consensus 89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~ 168 (210)
+|++|++..++. +..+++|+.|+|++|.++.+. .+..+++|+.|+|++|.+.++++ +..+++|+.|++++
T Consensus 115 ~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 115 SLEHNGISDING--LVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSK 184 (605)
T ss_dssp ECTTSCCCCCGG--GGGCTTCSEEECCSSCCCCCG---GGGSCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCS
T ss_pred EecCCCCCCCcc--ccCCCccCEEECCCCccCCch---hhcccCCCCEEECcCCcCCCchh-----hccCCCCCEEECcC
Confidence 999998888754 778889999999999888764 37788899999999999988765 77889999999999
Q ss_pred CCHHH
Q psy4162 169 ILPSE 173 (210)
Q Consensus 169 ~~~~~ 173 (210)
|.+.+
T Consensus 185 N~i~~ 189 (605)
T 1m9s_A 185 NHISD 189 (605)
T ss_dssp SCCCB
T ss_pred CCCCC
Confidence 87755
No 108
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.40 E-value=9.6e-13 Score=114.70 Aligned_cols=143 Identities=23% Similarity=0.163 Sum_probs=87.9
Q ss_pred cceeCCCCCccccchhhhcccCC-cccccCC---CCCC---CCCC-------CCccEEEccCCccccccCCchhhhhccC
Q psy4162 15 IPLDLSFQQIQSLDKVAVQKLKP-NVHRLGE---SPPM---LVGR-------YDTRSLWLSHNKISLVYGLDSLVHRTIL 80 (210)
Q Consensus 15 ~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~---~~~~---~~~l-------~~L~~L~ls~n~l~~~~~l~~~~~~~~~ 80 (210)
..|++++|.++.++...+..+++ ..+.+.- ...+ +..+ ++|+.|++++|+++.++ ..+.
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-------~~~~ 508 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS-------DDFR 508 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC-------GGGS
T ss_pred CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC-------hhhh
Confidence 44777777777777665543333 1111111 1111 1111 26777777777777665 3343
Q ss_pred --CCCCCCEEECcCCCCCcCCcccccCCCCccEEEcc------CCccCccccccccccCCCcCEEeeeCCCCCCccchHH
Q psy4162 81 --DPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH------KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRA 152 (210)
Q Consensus 81 --~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~------~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 152 (210)
.+++|+.|++++|+++.++.. +..+++|+.|+++ +|.+....+ ..+..+++|+.|++++|.+..+|.
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~~ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~ip~--- 583 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSKFPTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWP-EGITLCPSLTQLQIGSNDIRKVNE--- 583 (636)
T ss_dssp TTTCTTCCEEECCSSCCSSCCCG-GGGCSSCCEEECCSCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSCCCBCCS---
T ss_pred hccCCCcCEEECCCCCCCCcChh-hhcCCCCCEEECCCCcccccCcccccCh-HHHhcCCCCCEEECCCCcCCccCH---
Confidence 677778888888877776554 5667778888774 455544433 566777888888888888876766
Q ss_pred HHHHhCcCcccccCCCCCHH
Q psy4162 153 VVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 153 ~~l~~l~~L~~L~l~~~~~~ 172 (210)
.+. ++|+.|++++|+..
T Consensus 584 -~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 584 -KIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp -CCC--TTCCEEECCSCTTC
T ss_pred -hHh--CcCCEEECcCCCCc
Confidence 222 67888888887654
No 109
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.40 E-value=8.3e-13 Score=115.09 Aligned_cols=103 Identities=19% Similarity=0.124 Sum_probs=45.8
Q ss_pred CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCC-------CccEEEccCCccCcccc
Q psy4162 52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFP-------NLKILYLHKNQIEEYLS 124 (210)
Q Consensus 52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~-------~L~~L~l~~n~i~~~~~ 124 (210)
+.+|+.|++++|.++.++. ..+..+++|+.|++++|+++.++...+.... +|+.|++++|.++.++
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp- 504 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPK------ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS- 504 (636)
T ss_dssp CCCEEEEECCSSCCCSCCT------HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC-
T ss_pred CCCCCEEECcCCccCcCCH------HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC-
Confidence 3355555555555555443 3333444455555555544444433232221 4444444444444433
Q ss_pred ccccc--cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccC
Q psy4162 125 VFVLR--RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDS 166 (210)
Q Consensus 125 ~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l 166 (210)
..+. .+++|+.|++++|+++++|. .+..+++|+.|++
T Consensus 505 -~~~~~~~l~~L~~L~Ls~N~l~~ip~----~~~~l~~L~~L~L 543 (636)
T 4eco_A 505 -DDFRATTLPYLVGIDLSYNSFSKFPT----QPLNSSTLKGFGI 543 (636)
T ss_dssp -GGGSTTTCTTCCEEECCSSCCSSCCC----GGGGCSSCCEEEC
T ss_pred -hhhhhccCCCcCEEECCCCCCCCcCh----hhhcCCCCCEEEC
Confidence 1222 44444444444444444433 2334444444444
No 110
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.39 E-value=2e-12 Score=116.05 Aligned_cols=111 Identities=26% Similarity=0.327 Sum_probs=67.3
Q ss_pred CCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSF 92 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~ 92 (210)
....|++++|.++.+.+..+..+++ |+.|++++|.++.+++ ..|..+++|+.|++++
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~-----------------L~~L~L~~n~i~~~~~------~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKD-----------------LKVLNLAYNKINKIAD------EAFYGLDNLQVLNLSY 323 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCC-----------------CCEEEEESCCCCEECT------TTTTTCSSCCEEEEES
T ss_pred CccEEECCCCcccccChhhhhcCCC-----------------CCEEECCCCcCCCCCh------HHhcCCCCCCEEECCC
Confidence 3455777777777776665555555 6666666666665554 5555566666666666
Q ss_pred CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCc
Q psy4162 93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147 (210)
Q Consensus 93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 147 (210)
|+++.+.+..+..+++|+.|++++|.+..+++ ..+.++++|+.|++++|.++.+
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD-QTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS-SCSCSCCCCCEEEEETCCSCCC
T ss_pred CCCCccCHHHhcCCCCCCEEECCCCCCCccCh-hhhcCCCCCCEEECCCCCCCcc
Confidence 66665555555566666666666666655553 4555566666666666655544
No 111
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=2.9e-12 Score=115.03 Aligned_cols=143 Identities=22% Similarity=0.192 Sum_probs=90.7
Q ss_pred cceeCCCCCccccchhhhcccCC-cccccC---CCCCC---CCC-------CCCccEEEccCCccccccCCchhhhhccC
Q psy4162 15 IPLDLSFQQIQSLDKVAVQKLKP-NVHRLG---ESPPM---LVG-------RYDTRSLWLSHNKISLVYGLDSLVHRTIL 80 (210)
Q Consensus 15 ~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~---~~~~~---~~~-------l~~L~~L~ls~n~l~~~~~l~~~~~~~~~ 80 (210)
..|++++|.++.++...+..+++ ..+.+. +..++ +.. +++|+.|++++|+++.++ ..+.
T Consensus 676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp-------~~l~ 748 (876)
T 4ecn_A 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS-------DDFR 748 (876)
T ss_dssp EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCC-------GGGS
T ss_pred CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccch-------HHhh
Confidence 45777777777777665543333 111111 11111 111 127777777777777665 3443
Q ss_pred --CCCCCCEEECcCCCCCcCCcccccCCCCccEEEccC------CccCccccccccccCCCcCEEeeeCCCCCCccchHH
Q psy4162 81 --DPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHK------NQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRA 152 (210)
Q Consensus 81 --~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~------n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 152 (210)
.+++|+.|++++|+++.++.. +..+++|+.|++++ |.+....+ ..+.++++|+.|++++|.+..+|.
T Consensus 749 ~~~l~~L~~L~Ls~N~L~~lp~~-l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~~L~~L~~L~Ls~N~L~~Ip~--- 823 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYNCFSSFPTQ-PLNSSQLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIGSNDIRKVDE--- 823 (876)
T ss_dssp TTTCTTCCEEECCSSCCSSCCCG-GGGCTTCCEEECCCCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSCCCBCCS---
T ss_pred hccCCCcCEEEeCCCCCCccchh-hhcCCCCCEEECCCCCCcccccccccCh-HHHhcCCCCCEEECCCCCCCccCH---
Confidence 677888888888888776554 66777888888765 55554443 567778888888888888876766
Q ss_pred HHHHhCcCcccccCCCCCHH
Q psy4162 153 VVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 153 ~~l~~l~~L~~L~l~~~~~~ 172 (210)
.+ .++|+.||+++|++.
T Consensus 824 -~l--~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 824 -KL--TPQLYILDIADNPNI 840 (876)
T ss_dssp -CC--CSSSCEEECCSCTTC
T ss_pred -hh--cCCCCEEECCCCCCC
Confidence 22 257888888888653
No 112
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=5.6e-13 Score=107.65 Aligned_cols=104 Identities=11% Similarity=0.050 Sum_probs=91.5
Q ss_pred cEEEccCC-ccccccCCchhhhhccCCCCCCCEEECcC-CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162 56 RSLWLSHN-KISLVYGLDSLVHRTILDPDLIGWIDLSF-NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS 133 (210)
Q Consensus 56 ~~L~ls~n-~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~ 133 (210)
..++.+++ .++.+| . +..+.+|+.|+|++ |+++.+++..|..+.+|+.|+|++|+++++++ ..|.++++
T Consensus 11 ~~v~~~~~n~l~~ip-------~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~ 81 (347)
T 2ifg_A 11 SGLRCTRDGALDSLH-------H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPR 81 (347)
T ss_dssp SCEECCSSCCCTTTT-------T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSC
T ss_pred CEEEcCCCCCCCccC-------C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH-HHhcCCcC
Confidence 45688887 899887 6 77788999999996 99999998889999999999999999999986 78999999
Q ss_pred cCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 134 LRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 134 L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
|+.|+|++|.++.++. ..+..++ |+.|++.+|+..
T Consensus 82 L~~L~l~~N~l~~~~~---~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 82 LSRLNLSFNALESLSW---KTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCSCCCS---TTTCSCC-CCEEECCSSCCC
T ss_pred CCEEeCCCCccceeCH---HHcccCC-ceEEEeeCCCcc
Confidence 9999999999999987 3455555 999999999764
No 113
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.37 E-value=3.6e-12 Score=106.96 Aligned_cols=140 Identities=20% Similarity=0.241 Sum_probs=82.0
Q ss_pred CcceeCCCCCccccchhhhcccCC-cccccCCCC---CC-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESP---PM-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI 88 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~---~~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L 88 (210)
...|++++|+++.++... .+++ ..+.+.... .. ...+++|+.|++++|.++.+++ +..+++|+.|
T Consensus 223 L~~L~l~~n~l~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~l~~L~~L 292 (466)
T 1o6v_A 223 LDELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--------LAGLTALTNL 292 (466)
T ss_dssp CCEEECCSSCCCCCGGGG--GCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--------GTTCTTCSEE
T ss_pred CCEEECCCCCcccchhhh--cCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--------ccCCCccCeE
Confidence 455788888877765432 2233 111111111 11 2566677777777777776542 4555667777
Q ss_pred ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF 168 (210)
Q Consensus 89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~ 168 (210)
++++|++..+++ +..+++|+.|++++|.+++.++ +..+++|+.|++++|++.+++. +..+++|+.|++++
T Consensus 293 ~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDVSS-----LANLTNINWLSAGH 362 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCS
T ss_pred EcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCchh-----hccCCCCCEEeCCC
Confidence 777776666554 5566667777777776666543 4556666666666666666533 55566666666666
Q ss_pred CCHHH
Q psy4162 169 ILPSE 173 (210)
Q Consensus 169 ~~~~~ 173 (210)
|.+.+
T Consensus 363 n~l~~ 367 (466)
T 1o6v_A 363 NQISD 367 (466)
T ss_dssp SCCCB
T ss_pred CccCc
Confidence 65533
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=1.9e-12 Score=111.44 Aligned_cols=104 Identities=21% Similarity=0.288 Sum_probs=93.0
Q ss_pred CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS 133 (210)
Q Consensus 54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~ 133 (210)
.|+.|++++|.+++++ . +..+++|+.|++++|+++.++.. ++.+++|+.|++++|.+++++ .++.+++
T Consensus 442 ~L~~L~Ls~n~l~~lp-------~-~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp---~l~~l~~ 509 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC-------H-LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD---GVANLPR 509 (567)
T ss_dssp TCSEEECTTSCCSSCC-------C-GGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCG---GGTTCSS
T ss_pred CceEEEecCCCCCCCc-------C-ccccccCcEeecCcccccccchh-hhcCCCCCEEECCCCCCCCCc---ccCCCCC
Confidence 4789999999999986 3 66778999999999999988764 889999999999999999976 4889999
Q ss_pred cCEEeeeCCCCCCc--cchHHHHHHhCcCcccccCCCCCHHH
Q psy4162 134 LRTLSLYGNPIEKI--REYRAVVSTMIPQLVTLDSVFILPSE 173 (210)
Q Consensus 134 L~~L~l~~n~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~ 173 (210)
|+.|++++|.++++ |. .+..+++|+.|++++|++..
T Consensus 510 L~~L~Ls~N~l~~~~~p~----~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 510 LQELLLCNNRLQQSAAIQ----PLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CCEEECCSSCCCSSSTTG----GGGGCTTCCEEECTTSGGGG
T ss_pred CcEEECCCCCCCCCCCcH----HHhcCCCCCEEEecCCcCCC
Confidence 99999999999998 55 79999999999999998754
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=5.4e-13 Score=117.91 Aligned_cols=88 Identities=22% Similarity=0.290 Sum_probs=78.1
Q ss_pred CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccC
Q psy4162 52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131 (210)
Q Consensus 52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l 131 (210)
+.+|+.|+|++|.|+.++ ..|..+++|+.|+|++|+++.++.. +..+.+|+.|+|++|.++.++ ..++.+
T Consensus 246 l~~L~~L~Ls~N~l~~lp-------~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~lp--~~~~~l 315 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELP-------AEIKNLSNLRVLDLSHNRLTSLPAE-LGSCFQLKYFYFFDNMVTTLP--WEFGNL 315 (727)
T ss_dssp CCSCSCCBCTTSCCSCCC-------GGGGGGTTCCEEECTTSCCSSCCSS-GGGGTTCSEEECCSSCCCCCC--SSTTSC
T ss_pred CCCCCEEEeeCCcCcccC-------hhhhCCCCCCEEeCcCCcCCccChh-hcCCCCCCEEECCCCCCCccC--hhhhcC
Confidence 445999999999999776 6788899999999999999988665 889999999999999999887 448999
Q ss_pred CCcCEEeeeCCCCCCccc
Q psy4162 132 NSLRTLSLYGNPIEKIRE 149 (210)
Q Consensus 132 ~~L~~L~l~~n~l~~~~~ 149 (210)
++|+.|+|++|++++.+.
T Consensus 316 ~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 316 CNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp TTCCCEECTTSCCCSHHH
T ss_pred CCccEEeCCCCccCCCCh
Confidence 999999999999997644
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.33 E-value=6e-12 Score=108.19 Aligned_cols=134 Identities=13% Similarity=0.058 Sum_probs=95.0
Q ss_pred CcceeCCCCCccccchhhhcccCCcccccCCCCCC---C-CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEE
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPM---L-VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWID 89 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~---~-~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~ 89 (210)
...|++++|+|+.++. +. .++..+.+.... . ..+++|+.|++++|.++.++. .+++|+.|+
T Consensus 102 L~~L~Ls~N~l~~ip~--l~---~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~----------~l~~L~~L~ 166 (571)
T 3cvr_A 102 LEYLDACDNRLSTLPE--LP---ASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPE----------LPTSLEVLS 166 (571)
T ss_dssp CCEEECCSSCCSCCCC--CC---TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC----------CCTTCCEEE
T ss_pred CCEEEccCCCCCCcch--hh---cCCCEEECCCCcCCCCCCcCccccEEeCCCCccCcCCC----------cCCCcCEEE
Confidence 3456777777766665 22 111112222211 1 356678888888888887652 357899999
Q ss_pred CcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCc-------CEEeeeCCCCCCccchHHHHHHhCcCcc
Q psy4162 90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL-------RTLSLYGNPIEKIREYRAVVSTMIPQLV 162 (210)
Q Consensus 90 Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~l~~L~ 162 (210)
+++|+++.++. +. ++|+.|++++|.++.++. +.. +| +.|++++|.++.+|. .+..+++|+
T Consensus 167 Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp~----~l~~l~~L~ 233 (571)
T 3cvr_A 167 VRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA---VPV--RNHHSEETEIFFRCRENRITHIPE----NILSLDPTC 233 (571)
T ss_dssp CCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC---CC----------CCEEEECCSSCCCCCCG----GGGGSCTTE
T ss_pred CCCCCCCCcch--hh--CCCCEEECcCCCCCchhh---HHH--hhhcccccceEEecCCCcceecCH----HHhcCCCCC
Confidence 99999998776 44 899999999999998773 333 66 999999999999987 567799999
Q ss_pred cccCCCCCHHHHH
Q psy4162 163 TLDSVFILPSEKQ 175 (210)
Q Consensus 163 ~L~l~~~~~~~~~ 175 (210)
.|++++|++....
T Consensus 234 ~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 234 TIILEDNPLSSRI 246 (571)
T ss_dssp EEECCSSSCCHHH
T ss_pred EEEeeCCcCCCcC
Confidence 9999999986644
No 117
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.33 E-value=4.3e-12 Score=113.89 Aligned_cols=124 Identities=17% Similarity=0.074 Sum_probs=87.8
Q ss_pred CcceeCCCCCccccchhhhcccCC------cccccC-----CCCCC--CC--CCCCccEEEccCCccccccCCchhhhhc
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP------NVHRLG-----ESPPM--LV--GRYDTRSLWLSHNKISLVYGLDSLVHRT 78 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~------~~~~~~-----~~~~~--~~--~l~~L~~L~ls~n~l~~~~~l~~~~~~~ 78 (210)
...|++++|+|+.++...+..... .+..+. +..++ .. .+++|+.|++++|.++.++ ..
T Consensus 699 L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp-------~~ 771 (876)
T 4ecn_A 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFP-------TQ 771 (876)
T ss_dssp CSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCC-------CG
T ss_pred CCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccc-------hh
Confidence 456889999888887765542210 111111 12222 13 7888999999999998875 55
Q ss_pred cCCCCCCCEEECcC------CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCcc
Q psy4162 79 ILDPDLIGWIDLSF------NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR 148 (210)
Q Consensus 79 ~~~l~~L~~L~Ls~------n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 148 (210)
+..+++|+.|++++ |++....+..+..+++|+.|++++|.+..++. . +. ++|+.|++++|++..+.
T Consensus 772 l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~-~-l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE-K-LT--PQLYILDIADNPNISID 843 (876)
T ss_dssp GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCS-C-CC--SSSCEEECCSCTTCEEE
T ss_pred hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCH-h-hc--CCCCEEECCCCCCCccC
Confidence 66788999999876 66666666568888999999999999977764 2 32 68999999999988664
No 118
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.33 E-value=1.4e-12 Score=105.73 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=57.1
Q ss_pred CCCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCcccc-ccCCchhhhhccCCCCCCCE-EE
Q psy4162 12 EFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISL-VYGLDSLVHRTILDPDLIGW-ID 89 (210)
Q Consensus 12 ~~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~l~~~~~~~~~~l~~L~~-L~ 89 (210)
...+.|++++|+|+.++...|.++++ |+.|++++|++.+ ++. ..|.+++++.+ +.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~-----------------L~~L~Ls~N~i~~~i~~------~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGD-----------------LEKIEISQNDVLEVIEA------DVFSNLPKLHEIRI 86 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTT-----------------CCEEEEECCTTCCEECT------TSBCSCTTCCEEEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCC-----------------CCEEECcCCCCCCccCh------hHhhcchhhhhhhc
Confidence 35566788888888777777766666 7777777777643 443 45566655544 44
Q ss_pred CcCCCCCcCCcccccCCCCccEEEccCCccCcccc
Q psy4162 90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLS 124 (210)
Q Consensus 90 Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 124 (210)
+..|+++.+++..|..+++|+.|++++|+++..++
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCc
Confidence 44566666666556666666666666666665543
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.31 E-value=1.6e-11 Score=102.96 Aligned_cols=142 Identities=22% Similarity=0.193 Sum_probs=111.0
Q ss_pred CCcceeCCCCCccccchhhhcccCC-cccccCCCCC---C-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCE
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPP---M-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGW 87 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~---~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~ 87 (210)
....|++++|.++.+.+.. .+++ ..+.+..... . ...+++|+.|++++|.++.+++ +..+++|+.
T Consensus 200 ~L~~L~l~~n~l~~~~~~~--~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--------~~~l~~L~~ 269 (466)
T 1o6v_A 200 NLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--------LSGLTKLTE 269 (466)
T ss_dssp TCSEEECCSSCCCCCGGGG--GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--------GTTCTTCSE
T ss_pred CCCEEEecCCccccccccc--ccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--------hhcCCCCCE
Confidence 3566999999999887733 2333 1111221122 2 2678889999999999887752 677789999
Q ss_pred EECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCC
Q psy4162 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV 167 (210)
Q Consensus 88 L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~ 167 (210)
|++++|+++.+++ +..+++|+.|++++|.+...++ +..+++|+.|++++|.+.+.+. +..+++|+.|+++
T Consensus 270 L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 270 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFY 339 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECC
T ss_pred EECCCCccCcccc--ccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh-----hccCccCCEeECC
Confidence 9999999998876 7889999999999999988764 6789999999999999998876 6789999999999
Q ss_pred CCCHHHH
Q psy4162 168 FILPSEK 174 (210)
Q Consensus 168 ~~~~~~~ 174 (210)
+|.+.+.
T Consensus 340 ~n~l~~~ 346 (466)
T 1o6v_A 340 NNKVSDV 346 (466)
T ss_dssp SSCCCCC
T ss_pred CCccCCc
Confidence 9987654
No 120
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.29 E-value=2.9e-12 Score=103.78 Aligned_cols=108 Identities=12% Similarity=0.155 Sum_probs=92.4
Q ss_pred cceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC
Q psy4162 15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN 94 (210)
Q Consensus 15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~ 94 (210)
.+++.+.++++.+|... . .+ ++.|+|++|+|+.++. ..|.++++|+.|+|++|+
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~--~~-----------------l~~L~Ls~N~i~~i~~------~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-P--RN-----------------AIELRFVLTKLRVIQK------GAFSGFGDLEKIEISQND 65 (350)
T ss_dssp TEEEEESTTCCSCCTTC-C--TT-----------------CSEEEEESCCCSEECT------TSSTTCTTCCEEEEECCT
T ss_pred CEEEecCCCCCccCcCc-C--CC-----------------CCEEEccCCcCCCcCH------HHHcCCCCCCEEECcCCC
Confidence 46888999999998643 2 34 9999999999999997 889999999999999999
Q ss_pred CC-cCCcccccCCCCccE-EEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162 95 IK-NVDKNMFTNFPNLKI-LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149 (210)
Q Consensus 95 i~-~~~~~~~~~~~~L~~-L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 149 (210)
+. .++...|..++++.. +.+..|+++.+++ ..+..+++|+.|++++|.+..+++
T Consensus 66 i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 66 VLEVIEADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp TCCEECTTSBCSCTTCCEEEEEEETTCCEECT-TSBCCCTTCCEEEEEEECCSSCCC
T ss_pred CCCccChhHhhcchhhhhhhcccCCcccccCc-hhhhhccccccccccccccccCCc
Confidence 74 467777888888765 6778899999986 889999999999999999987765
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.27 E-value=2.7e-11 Score=101.65 Aligned_cols=136 Identities=21% Similarity=0.192 Sum_probs=86.7
Q ss_pred CcceeCCCCCccccchhhhcccCC-cccccCCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEE
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWID 89 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~ 89 (210)
...|++++|.++.++. +..+++ ..+.+....+. .+.+++|+.|++++|.+++++ +..+++|+.|+
T Consensus 44 L~~L~Ls~n~l~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~---------~~~l~~L~~L~ 112 (457)
T 3bz5_A 44 LTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD---------VTPLTKLTYLN 112 (457)
T ss_dssp CCEEECCSSCCCCCTT--GGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC---------CTTCTTCCEEE
T ss_pred CCEEEccCCCcccChh--hcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee---------cCCCCcCCEEE
Confidence 4569999999998863 444455 11111111122 255666777777777766642 44566777777
Q ss_pred CcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCC-CCccchHHHHHHhCcCcccccCCC
Q psy4162 90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI-EKIREYRAVVSTMIPQLVTLDSVF 168 (210)
Q Consensus 90 Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~l~~L~~L~l~~ 168 (210)
+++|+++.++ +..+++|+.|++++|.+++++ ++.+++|+.|++++|.. ..+ . +..+++|+.|++++
T Consensus 113 L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~-~-----~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 113 CDTNKLTKLD---VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL-D-----VTPQTQLTTLDCSF 179 (457)
T ss_dssp CCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCC-C-----CTTCTTCCEEECCS
T ss_pred CCCCcCCeec---CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCccccc-c-----cccCCcCCEEECCC
Confidence 7777777653 566777777777777777653 55677777777777743 333 2 45677888888887
Q ss_pred CCHHH
Q psy4162 169 ILPSE 173 (210)
Q Consensus 169 ~~~~~ 173 (210)
|.+..
T Consensus 180 n~l~~ 184 (457)
T 3bz5_A 180 NKITE 184 (457)
T ss_dssp SCCCC
T ss_pred Cccce
Confidence 76544
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=2.5e-12 Score=104.64 Aligned_cols=159 Identities=25% Similarity=0.207 Sum_probs=103.7
Q ss_pred CCcceeCCCCCccccch----hhhcccCCcccccCCCCCC-C-------CC-----CCCccEEEccCCccccccCCchhh
Q psy4162 13 FKIPLDLSFQQIQSLDK----VAVQKLKPNVHRLGESPPM-L-------VG-----RYDTRSLWLSHNKISLVYGLDSLV 75 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~----~~~~~l~~~~~~~~~~~~~-~-------~~-----l~~L~~L~ls~n~l~~~~~l~~~~ 75 (210)
....|++++|.++..+. ..+.+++..+..+.+.... . .. .++|+.|++++|.++.... ..+
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~-~~l- 100 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS-DEL- 100 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-HHH-
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH-HHH-
Confidence 45679999999998877 4555455222222332222 0 12 2788889999888887553 001
Q ss_pred hhccCCC-CCCCEEECcCCCCCcCCccccc----C-CCCccEEEccCCccCccccc---cccccCC-CcCEEeeeCCCCC
Q psy4162 76 HRTILDP-DLIGWIDLSFNNIKNVDKNMFT----N-FPNLKILYLHKNQIEEYLSV---FVLRRVN-SLRTLSLYGNPIE 145 (210)
Q Consensus 76 ~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~----~-~~~L~~L~l~~n~i~~~~~~---~~~~~l~-~L~~L~l~~n~l~ 145 (210)
...+..+ ++|+.|++++|+++......+. . ..+|+.|++++|.++..... ..+..++ +|+.|++++|.+.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 1234444 7899999999998887764332 3 35899999999988854420 2234554 8999999999988
Q ss_pred CccchH-HHHHHhC-cCcccccCCCCCHHH
Q psy4162 146 KIREYR-AVVSTMI-PQLVTLDSVFILPSE 173 (210)
Q Consensus 146 ~~~~~~-~~~l~~l-~~L~~L~l~~~~~~~ 173 (210)
+..... ...+..+ ++|+.||+++|.+.+
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 654311 1245556 489999999998776
No 123
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.24 E-value=5.4e-11 Score=103.31 Aligned_cols=80 Identities=19% Similarity=0.135 Sum_probs=67.6
Q ss_pred CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcc
Q psy4162 83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLV 162 (210)
Q Consensus 83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~ 162 (210)
++|+.|++++|+++.++ ..+++|+.|++++|.++.++. .+++|+.|++++|.++.+|. .+..+++|+
T Consensus 221 ~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~lp~----~l~~l~~L~ 287 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRLPE----SLIHLSSET 287 (622)
T ss_dssp TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCSCCG----GGGGSCTTC
T ss_pred CCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCcCCH----HHhhccccC
Confidence 67888888888888876 335789999999999988763 56889999999999999887 689999999
Q ss_pred cccCCCCCHHHHH
Q psy4162 163 TLDSVFILPSEKQ 175 (210)
Q Consensus 163 ~L~l~~~~~~~~~ 175 (210)
.|++++|++.+..
T Consensus 288 ~L~L~~N~l~~~~ 300 (622)
T 3g06_A 288 TVNLEGNPLSERT 300 (622)
T ss_dssp EEECCSCCCCHHH
T ss_pred EEEecCCCCCCcC
Confidence 9999999986544
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.24 E-value=6.1e-11 Score=99.40 Aligned_cols=61 Identities=16% Similarity=0.317 Sum_probs=29.7
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEY 122 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 122 (210)
+.+.+|+.|++++|++++++.. .++|+.|++++|+++.++. +..+++|+.|++++|.++++
T Consensus 150 ~~l~~L~~L~l~~N~l~~lp~~----------~~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~N~l~~l 210 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKKLPDL----------PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKL 210 (454)
T ss_dssp TTCTTCCEEECCSSCCSCCCCC----------CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSC
T ss_pred CCCCCCCEEECCCCcCcccCCC----------cccccEEECcCCcCCcCcc--ccCCCCCCEEECCCCcCCcC
Confidence 4455566666666666554421 1244555555555444431 44444444444444444443
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.23 E-value=2.3e-13 Score=101.68 Aligned_cols=136 Identities=26% Similarity=0.367 Sum_probs=107.3
Q ss_pred CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN 93 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n 93 (210)
...|++++|+++.++ .+.++++ |+.|++++|.++.++ ..+..+++|+.|++++|
T Consensus 50 L~~L~ls~n~l~~l~--~~~~l~~-----------------L~~L~l~~n~l~~l~-------~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 50 CKHLALSTNNIEKIS--SLSGMEN-----------------LRILSLGRNLIKKIE-------NLDAVADTLEELWISYN 103 (198)
T ss_dssp CSEEECSEEEESCCC--CHHHHTT-----------------CCEEEEEEEEECSCS-------SHHHHHHHCSEEEEEEE
T ss_pred CCEEECCCCCCcccc--ccccCCC-----------------CCEEECCCCCccccc-------chhhcCCcCCEEECcCC
Confidence 445667777766665 3444455 999999999999887 34445578999999999
Q ss_pred CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCc-------cchHHHHHHhCcCcccccC
Q psy4162 94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI-------REYRAVVSTMIPQLVTLDS 166 (210)
Q Consensus 94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~l~~L~~L~l 166 (210)
+++.++. +..+++|+.|++++|.++.++.+..+..+++|+.|++++|++.+. ..++...+..+++|+.||.
T Consensus 104 ~l~~l~~--~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 104 QIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp ECCCHHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred cCCcCCc--cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 9999763 788899999999999999877445788999999999999999766 4455667999999999996
Q ss_pred CCCCHHHHHHH
Q psy4162 167 VFILPSEKQET 177 (210)
Q Consensus 167 ~~~~~~~~~~~ 177 (210)
..+...++..+
T Consensus 182 ~~i~~~e~~~a 192 (198)
T 1ds9_A 182 MPVDVDEREQA 192 (198)
T ss_dssp GGGTTTTTTHH
T ss_pred cccCHHHHHHH
Confidence 65555555444
No 126
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.21 E-value=6.5e-11 Score=99.31 Aligned_cols=136 Identities=16% Similarity=0.107 Sum_probs=105.6
Q ss_pred CCcceeCCCCCccccchhhhcccCC-cccccCCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI 88 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L 88 (210)
....|++++|+++.++ +..+++ ..+.+.-..+. .+.+++|+.|++++|+++.++ +..+++|+.|
T Consensus 65 ~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~---------~~~l~~L~~L 132 (457)
T 3bz5_A 65 GLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD---------VSQNPLLTYL 132 (457)
T ss_dssp TCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC---------CTTCTTCCEE
T ss_pred CCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec---------CCCCCcCCEE
Confidence 3566999999999885 333333 11222222222 378899999999999998863 5677899999
Q ss_pred ECcCCCCCcCCcccccCCCCccEEEccCCc-cCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCC
Q psy4162 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQ-IEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV 167 (210)
Q Consensus 89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~ 167 (210)
++++|+++.++ +..+++|+.|++++|. +..+ .+..+++|+.|++++|.+++++ +..+++|+.|+++
T Consensus 133 ~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~l~------l~~l~~L~~L~l~ 199 (457)
T 3bz5_A 133 NCARNTLTEID---VSHNTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNKITELD------VSQNKLLNRLNCD 199 (457)
T ss_dssp ECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSCCCCCC------CTTCTTCCEEECC
T ss_pred ECCCCccceec---cccCCcCCEEECCCCCccccc----ccccCCcCCEEECCCCccceec------cccCCCCCEEECc
Confidence 99999999973 6789999999999995 4443 2678899999999999999975 5678999999999
Q ss_pred CCCHHH
Q psy4162 168 FILPSE 173 (210)
Q Consensus 168 ~~~~~~ 173 (210)
+|.+..
T Consensus 200 ~N~l~~ 205 (457)
T 3bz5_A 200 TNNITK 205 (457)
T ss_dssp SSCCSC
T ss_pred CCcCCe
Confidence 997654
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.21 E-value=6e-11 Score=102.00 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=52.5
Q ss_pred CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS 133 (210)
Q Consensus 54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~ 133 (210)
+|+.|++++|.++.++ . .+++|+.|++++|+++.++. .+++|+.|++++|.++.++. +. ++
T Consensus 121 ~L~~L~Ls~N~l~~lp-------~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~---l~--~~ 181 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLP-------E---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE---LP--ES 181 (571)
T ss_dssp TCCEEECCSSCCSCCC-------C---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC---CC--TT
T ss_pred CCCEEECCCCcCCCCC-------C---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch---hh--CC
Confidence 4445555555444433 2 34556666666666665544 24566666666666666552 33 66
Q ss_pred cCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 134 LRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 134 L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
|+.|++++|.++.+|.+........+.|+.|++++|.+.
T Consensus 182 L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 182 LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp CCEEECCSSCCSSCCCCC--------CCEEEECCSSCCC
T ss_pred CCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcce
Confidence 777777777776665411000111122367777776654
No 128
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.20 E-value=7.2e-12 Score=101.89 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=106.3
Q ss_pred CCcceeCCCCCccccchhhhccc----CCcccccCCCCCC-C-----------CCC-CCccEEEccCCccccccCCchhh
Q psy4162 13 FKIPLDLSFQQIQSLDKVAVQKL----KPNVHRLGESPPM-L-----------VGR-YDTRSLWLSHNKISLVYGLDSLV 75 (210)
Q Consensus 13 ~~~~L~ls~n~l~~l~~~~~~~l----~~~~~~~~~~~~~-~-----------~~l-~~L~~L~ls~n~l~~~~~l~~~~ 75 (210)
....|++++|.++......+..+ ...+..+.+.... . ..+ ++|+.|++++|.++.... ..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l- 129 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS-SEF- 129 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-HHH-
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH-HHH-
Confidence 35679999999998766544432 1212222222222 0 223 789999999999988753 111
Q ss_pred hhccCC-CCCCCEEECcCCCCCcCCccc----ccCCC-CccEEEccCCccCccccccc----cccC-CCcCEEeeeCCCC
Q psy4162 76 HRTILD-PDLIGWIDLSFNNIKNVDKNM----FTNFP-NLKILYLHKNQIEEYLSVFV----LRRV-NSLRTLSLYGNPI 144 (210)
Q Consensus 76 ~~~~~~-l~~L~~L~Ls~n~i~~~~~~~----~~~~~-~L~~L~l~~n~i~~~~~~~~----~~~l-~~L~~L~l~~n~l 144 (210)
...+.. ..+|+.|++++|+++...... +..++ +|+.|++++|.++.... .. +..+ ++|+.|++++|.+
T Consensus 130 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 130 KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC-AELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp HHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-HHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhH-HHHHHHHHhCCCCCCEEECCCCCC
Confidence 133444 369999999999998654322 23444 99999999999987763 33 3445 5999999999999
Q ss_pred CCccch-HHHHHHh-CcCcccccCCCCCHHHH
Q psy4162 145 EKIREY-RAVVSTM-IPQLVTLDSVFILPSEK 174 (210)
Q Consensus 145 ~~~~~~-~~~~l~~-l~~L~~L~l~~~~~~~~ 174 (210)
...... -...+.. .++|+.|++++|.+.+.
T Consensus 209 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 209 GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp GGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred ChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 873221 0124555 45999999999987653
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.16 E-value=1.5e-10 Score=96.96 Aligned_cols=98 Identities=18% Similarity=0.211 Sum_probs=62.1
Q ss_pred CCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCC
Q psy4162 53 YDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVN 132 (210)
Q Consensus 53 ~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~ 132 (210)
++|+.|++++|++++++ .+..+++|+.|++++|++++++.. ..+|+.|++++|.++.++. ++.++
T Consensus 131 ~~L~~L~L~~n~l~~lp--------~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~~---~~~l~ 195 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP--------ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELPE---LQNLP 195 (454)
T ss_dssp TTCCEEECCSSCCSSCC--------CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCCC---CTTCT
T ss_pred CCCCEEECcCCCCCCCc--------ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCcc---ccCCC
Confidence 45666666666666543 255566777777777776665442 2467777777777766542 56677
Q ss_pred CcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 133 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 133 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
+|+.|++++|.+.+++.. .++|+.|++++|...
T Consensus 196 ~L~~L~l~~N~l~~l~~~-------~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 196 FLTAIYADNNSLKKLPDL-------PLSLESIVAGNNILE 228 (454)
T ss_dssp TCCEEECCSSCCSSCCCC-------CTTCCEEECCSSCCS
T ss_pred CCCEEECCCCcCCcCCCC-------cCcccEEECcCCcCC
Confidence 777777777777766541 246777777777554
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.13 E-value=3.9e-11 Score=98.20 Aligned_cols=121 Identities=20% Similarity=0.159 Sum_probs=84.2
Q ss_pred CCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCC----cCCcccccCCCCccEEEccCCccCccccc-
Q psy4162 51 GRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIK----NVDKNMFTNFPNLKILYLHKNQIEEYLSV- 125 (210)
Q Consensus 51 ~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~~~~L~~L~l~~n~i~~~~~~- 125 (210)
.+++|+.|++++|.++... +..+.+..+..+++|+.|++++|.++ ...+..+..+++|+.|++++|.++.....
T Consensus 185 ~~~~L~~L~L~~n~l~~~g-~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEG-IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HCTTCCEEECCSSCCCHHH-HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhH-HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 4556889999998887321 01111136677788999999999884 22223467788999999999998775310
Q ss_pred --ccc--ccCCCcCEEeeeCCCCCC-----ccchHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162 126 --FVL--RRVNSLRTLSLYGNPIEK-----IREYRAVVSTMIPQLVTLDSVFILPSEKQ 175 (210)
Q Consensus 126 --~~~--~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 175 (210)
..+ +.+++|+.|++++|.+.. ++. .....+++|+.|++++|.+.+..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~---~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT---VIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH---HHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH---HHHhcCCCceEEEccCCcCCcch
Confidence 223 337889999999999887 444 23366899999999998876544
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.11 E-value=2.8e-10 Score=98.79 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=19.0
Q ss_pred CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccc
Q psy4162 83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYL 123 (210)
Q Consensus 83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 123 (210)
++|+.|++++|+++.++.. +++|+.|++++|.++.++
T Consensus 121 ~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~ 157 (622)
T 3g06_A 121 SGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLP 157 (622)
T ss_dssp TTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCC
T ss_pred CCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcC
Confidence 4455555555555554432 245555566655555543
No 132
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.11 E-value=6.3e-11 Score=94.91 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=89.6
Q ss_pred CCCCCccEEEccCCccccc-cCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCC-ccCccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLV-YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKN-QIEEYLSVFV 127 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~-~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~ 127 (210)
..+++|+.|++++|.++.. .+ ..+..+++|+.|++++|.++...+..+..+++|+.|++++| .++...-...
T Consensus 90 ~~~~~L~~L~L~~~~l~~~~~~------~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~ 163 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVIEVSTLH------GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 163 (336)
T ss_dssp CCCBCCCEEECTTCEECHHHHH------HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred ccCCCCCEEEccCCCcCHHHHH------HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH
Confidence 5678899999999998753 21 66788899999999999988665556788999999999999 6775321145
Q ss_pred cccCCCcCEEeeeCC-CCCCc--cchHHHHHHhCc-CcccccCCCCC
Q psy4162 128 LRRVNSLRTLSLYGN-PIEKI--REYRAVVSTMIP-QLVTLDSVFIL 170 (210)
Q Consensus 128 ~~~l~~L~~L~l~~n-~l~~~--~~~~~~~l~~l~-~L~~L~l~~~~ 170 (210)
+..+++|+.|++++| .+++. +. .+..++ +|+.|++++|.
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQV----AVAHVSETITQLNLSGYR 206 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHH----HHHHSCTTCCEEECCSCG
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHH----HHHhcccCCCEEEeCCCc
Confidence 778999999999999 88753 33 688899 99999999994
No 133
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.10 E-value=2.3e-11 Score=97.53 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=37.9
Q ss_pred cCCCCCCCEEECcCC-CCCcC-CcccccCCC-CccEEEccCCc--cCc--cccccccccCCCcCEEeeeCCC-CCCccch
Q psy4162 79 ILDPDLIGWIDLSFN-NIKNV-DKNMFTNFP-NLKILYLHKNQ--IEE--YLSVFVLRRVNSLRTLSLYGNP-IEKIREY 150 (210)
Q Consensus 79 ~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~~~-~L~~L~l~~n~--i~~--~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 150 (210)
+..+++|+.|++++| .++.. .+..+..++ +|+.|++++|. ++. ++ ..+..+++|+.|++++|. +++...
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~--~~~~~~~~L~~L~l~~~~~l~~~~~- 240 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS--TLVRRCPNLVHLDLSDSVMLKNDCF- 240 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH--HHHHHCTTCSEEECTTCTTCCGGGG-
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH--HHHhhCCCCCEEeCCCCCcCCHHHH-
Confidence 334445555555555 44432 112233444 55555555552 221 11 223445555555555555 332111
Q ss_pred HHHHHHhCcCcccccCCCC
Q psy4162 151 RAVVSTMIPQLVTLDSVFI 169 (210)
Q Consensus 151 ~~~~l~~l~~L~~L~l~~~ 169 (210)
..+..+++|+.|++++|
T Consensus 241 --~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 241 --QEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp --GGGGGCTTCCEEECTTC
T ss_pred --HHHhCCCCCCEeeCCCC
Confidence 13455555555555555
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.08 E-value=3.9e-11 Score=98.26 Aligned_cols=118 Identities=17% Similarity=0.097 Sum_probs=72.0
Q ss_pred CCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCc-----CCcccccCCCCccEEEccCCccC-----cc
Q psy4162 53 YDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKN-----VDKNMFTNFPNLKILYLHKNQIE-----EY 122 (210)
Q Consensus 53 ~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-----~~~~~~~~~~~L~~L~l~~n~i~-----~~ 122 (210)
++|+.|++++|+++.... ..+ ...+..+++|+.|++++|+++. +.+..+..+++|+.|++++|.++ .+
T Consensus 159 ~~L~~L~L~~n~l~~~~~-~~l-~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSM-KEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp CCCCEEECCSSCCTGGGH-HHH-HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHH-HHH-HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence 556666666666542110 000 0244556677888888877762 22213666778888888888874 23
Q ss_pred ccccccccCCCcCEEeeeCCCCCCccchH-HHHHHh--CcCcccccCCCCCHHHH
Q psy4162 123 LSVFVLRRVNSLRTLSLYGNPIEKIREYR-AVVSTM--IPQLVTLDSVFILPSEK 174 (210)
Q Consensus 123 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~--l~~L~~L~l~~~~~~~~ 174 (210)
+ ..+..+++|+.|++++|.+....... ...+.. +++|+.|++++|.+...
T Consensus 237 ~--~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~ 289 (386)
T 2ca6_A 237 A--IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289 (386)
T ss_dssp H--HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred H--HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence 2 44667788888888888877552210 113433 78888888888887663
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=4.3e-10 Score=90.21 Aligned_cols=83 Identities=17% Similarity=0.029 Sum_probs=48.4
Q ss_pred CCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcC-EEeeeCCCCCCccchHHHHHHhCcC
Q psy4162 82 PDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLR-TLSLYGNPIEKIREYRAVVSTMIPQ 160 (210)
Q Consensus 82 l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~l~~ 160 (210)
+++|+.+++++|+++.++...|..+.+|+.+++..| ++.+++ ..|.++.+|+ .+.+.+ .+..++. .++.++++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~~-~l~~I~~---~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELPA-SVTAIEF---GAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEECT-TCCEECT---TTTTTCTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEcc-cceEEch---hhhhCCcc
Confidence 455666666666666666665666666666666655 555554 5566666666 666655 5555544 35566666
Q ss_pred cccccCCCCC
Q psy4162 161 LVTLDSVFIL 170 (210)
Q Consensus 161 L~~L~l~~~~ 170 (210)
|+.+++.++.
T Consensus 299 L~~l~l~~n~ 308 (329)
T 3sb4_A 299 LRYVLATGDK 308 (329)
T ss_dssp EEEEEECSSC
T ss_pred CCEEEeCCCc
Confidence 6666654443
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=3.4e-10 Score=90.81 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=95.3
Q ss_pred CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCcc-EEEccCCccCcccccccccc
Q psy4162 52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLK-ILYLHKNQIEEYLSVFVLRR 130 (210)
Q Consensus 52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~-~L~l~~n~i~~~~~~~~~~~ 130 (210)
+.+|+.+++++|.++.++. ..|.++.+|+.+++++| ++.++...|..+.+|+ .+.+.. .++.+++ ..|.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~------~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~-~aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPD------FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF-GAFMG 295 (329)
T ss_dssp CTTCCEEECTTBCCCEECT------TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT-TTTTT
T ss_pred cCCCeEEECCCCCcceecH------hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch-hhhhC
Confidence 8899999999999999998 99999999999999998 9999999999999999 999988 8888886 89999
Q ss_pred CCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccC
Q psy4162 131 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDS 166 (210)
Q Consensus 131 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l 166 (210)
+++|+.+++++|.+..++. .++.++++|+.+..
T Consensus 296 c~~L~~l~l~~n~i~~I~~---~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 296 CDNLRYVLATGDKITTLGD---ELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTEEEEEECSSCCCEECT---TTTCTTCCCCEEEC
T ss_pred CccCCEEEeCCCccCccch---hhhcCCcchhhhcc
Confidence 9999999999999999987 57999999988754
No 137
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.98 E-value=8.4e-10 Score=85.97 Aligned_cols=109 Identities=22% Similarity=0.239 Sum_probs=84.5
Q ss_pred EEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCc--ccccCCCCccEEEccCCccCccccccccccCCCcC
Q psy4162 58 LWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK--NMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLR 135 (210)
Q Consensus 58 L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~ 135 (210)
++++.|....++.+-. .....+++|+.|+|++|+++.+.. ..+..+++|+.|+|++|.++++..+..+..+ +|+
T Consensus 148 l~l~~N~~~~~~~~l~---i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~ 223 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLR---IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLE 223 (267)
T ss_dssp CCCCTTSHHHHHHHHH---HHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCS
T ss_pred ccccCCHHHHHHHHHH---HHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-Ccc
Confidence 5666776555442111 222456899999999999998764 3355799999999999999998665666666 999
Q ss_pred EEeeeCCCCCC----ccchHHHHHHhCcCcccccCCCCC
Q psy4162 136 TLSLYGNPIEK----IREYRAVVSTMIPQLVTLDSVFIL 170 (210)
Q Consensus 136 ~L~l~~n~l~~----~~~~~~~~l~~l~~L~~L~l~~~~ 170 (210)
.|++++|++.+ .+.|+...+..+|+|+.||....+
T Consensus 224 ~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~ 262 (267)
T 3rw6_A 224 ELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELP 262 (267)
T ss_dssp EEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCC
T ss_pred eEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCC
Confidence 99999999985 346788889999999999987764
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.97 E-value=1.7e-10 Score=96.23 Aligned_cols=118 Identities=14% Similarity=0.010 Sum_probs=80.7
Q ss_pred CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCC----cccccCCCCccEEEccCCccCccccccc
Q psy4162 52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD----KNMFTNFPNLKILYLHKNQIEEYLSVFV 127 (210)
Q Consensus 52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 127 (210)
+++|+.|++++|.++.... ..+........++|+.|++++|.++... +..+..+++|+.|++++|.+..... ..
T Consensus 283 ~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-~~ 360 (461)
T 1z7x_W 283 KESLKELSLAGNELGDEGA-RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV-RE 360 (461)
T ss_dssp CTTCCEEECTTCCCHHHHH-HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH-HH
T ss_pred CCCcceEECCCCCCchHHH-HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH-HH
Confidence 5668888888888765321 1111112223358888888888887653 2234557889999999998877542 33
Q ss_pred ccc-----CCCcCEEeeeCCCCCC-----ccchHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162 128 LRR-----VNSLRTLSLYGNPIEK-----IREYRAVVSTMIPQLVTLDSVFILPSEKQ 175 (210)
Q Consensus 128 ~~~-----l~~L~~L~l~~n~l~~-----~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 175 (210)
+.. .++|+.|++++|.+++ ++. .+..+++|+.|++++|.+.+..
T Consensus 361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~----~l~~~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA----TLLANHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH----HHHHCCCCCEEECCSSSCCHHH
T ss_pred HHHHHcCCCCceEEEECCCCCCChhhHHHHHH----HHHhCCCccEEECCCCCCCHHH
Confidence 322 6789999999999884 333 6778999999999999876654
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.97 E-value=2.3e-10 Score=93.52 Aligned_cols=160 Identities=17% Similarity=0.073 Sum_probs=100.3
Q ss_pred CcceeCCCCCccccchhhhccc----CCcccccCCCCCC--------C-CCCCCccEEEccCCccccccCCchhhhhcc-
Q psy4162 14 KIPLDLSFQQIQSLDKVAVQKL----KPNVHRLGESPPM--------L-VGRYDTRSLWLSHNKISLVYGLDSLVHRTI- 79 (210)
Q Consensus 14 ~~~L~ls~n~l~~l~~~~~~~l----~~~~~~~~~~~~~--------~-~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~- 79 (210)
...|++++|.++......+..+ ...+..+.+.... . ..+.+|+.|++++|.++.... ..+. ..+
T Consensus 74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~-~~L~-~~L~ 151 (372)
T 3un9_A 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC-KDLR-DLLL 151 (372)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH-HHHH-HHHH
T ss_pred CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH-HHHH-HHHH
Confidence 4568888888876555443321 0111122222211 0 335568888888888876432 1111 122
Q ss_pred CCCCCCCEEECcCCCCCcCCcc----cccCCCCccEEEccCCccCcccc---ccccccCCCcCEEeeeCCCCCCccch-H
Q psy4162 80 LDPDLIGWIDLSFNNIKNVDKN----MFTNFPNLKILYLHKNQIEEYLS---VFVLRRVNSLRTLSLYGNPIEKIREY-R 151 (210)
Q Consensus 80 ~~l~~L~~L~Ls~n~i~~~~~~----~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~-~ 151 (210)
...+.|+.|++++|.++..... .+..+++|+.|++++|.+..... ...+...++|+.|++++|.+++.... -
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 3457899999999988764322 23567889999999999876431 03456678899999999999865321 1
Q ss_pred HHHHHhCcCcccccCCCCCHHHHH
Q psy4162 152 AVVSTMIPQLVTLDSVFILPSEKQ 175 (210)
Q Consensus 152 ~~~l~~l~~L~~L~l~~~~~~~~~ 175 (210)
...+...++|+.||+++|.+.+..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHH
Confidence 134667889999999999876544
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.95 E-value=8.6e-10 Score=91.93 Aligned_cols=122 Identities=16% Similarity=0.038 Sum_probs=59.2
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCC----cccccCCCCccEEEccCCccCccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD----KNMFTNFPNLKILYLHKNQIEEYLSV 125 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~~ 125 (210)
..+++|+.|++++|.++.... ..+....+...++|+.|++++|+++... +..+..+++|+.|++++|.+.....
T Consensus 110 ~~~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~- 187 (461)
T 1z7x_W 110 RTLPTLQELHLSDNLLGDAGL-QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV- 187 (461)
T ss_dssp TSCTTCCEEECCSSBCHHHHH-HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH-
T ss_pred ccCCceeEEECCCCcCchHHH-HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH-
Confidence 455567777777777654321 0111111222345666666666665532 1223345566666666666554331
Q ss_pred cccc-----cCCCcCEEeeeCCCCCCccch-HHHHHHhCcCcccccCCCCCHHH
Q psy4162 126 FVLR-----RVNSLRTLSLYGNPIEKIREY-RAVVSTMIPQLVTLDSVFILPSE 173 (210)
Q Consensus 126 ~~~~-----~l~~L~~L~l~~n~l~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~ 173 (210)
..+. ..++|+.|++++|.+...... -...+..+++|+.|++++|.+.+
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 2221 234566666666665543110 00134555666666666655433
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.86 E-value=6e-10 Score=91.08 Aligned_cols=119 Identities=13% Similarity=-0.020 Sum_probs=81.9
Q ss_pred CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccc-----cCCCCccEEEccCCccCccccc-
Q psy4162 52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMF-----TNFPNLKILYLHKNQIEEYLSV- 125 (210)
Q Consensus 52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-----~~~~~L~~L~l~~n~i~~~~~~- 125 (210)
..+|+.|+|++|.++.... . .....+.+|+.|++++|.++......+ ...++|+.|++++|.++.....
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~-~----~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~ 174 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGL-R----TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAV 174 (372)
T ss_dssp SSCEEEEECTTCCCCHHHH-H----HTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHH-H----HHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHH
Confidence 3688999999998865321 0 122233578999999998876543322 2467899999999998764320
Q ss_pred --cccccCCCcCEEeeeCCCCCCccch-HHHHHHhCcCcccccCCCCCHHHHH
Q psy4162 126 --FVLRRVNSLRTLSLYGNPIEKIREY-RAVVSTMIPQLVTLDSVFILPSEKQ 175 (210)
Q Consensus 126 --~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 175 (210)
..+...++|+.|+|++|.+.+.... -...+...++|+.|++++|.+.+..
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 2346788899999999998764321 1134667789999999999886644
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=6.6e-08 Score=71.18 Aligned_cols=123 Identities=15% Similarity=0.081 Sum_probs=90.1
Q ss_pred CCCCccEEEccCC-ccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCc----ccccCCCCccEEEccCCccCcccc-
Q psy4162 51 GRYDTRSLWLSHN-KISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK----NMFTNFPNLKILYLHKNQIEEYLS- 124 (210)
Q Consensus 51 ~l~~L~~L~ls~n-~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~- 124 (210)
..++|+.|+|++| .+..... ..+. ..+...++|+.|+|++|.+..... ..+...++|+.|++++|.|.....
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~-~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTL-KACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHH-HHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHH-HHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 3456999999999 8876321 1111 556667899999999999976432 224456889999999999987531
Q ss_pred --ccccccCCCcCEEee--eCCCCCCccch-HHHHHHhCcCcccccCCCCCHHHHH
Q psy4162 125 --VFVLRRVNSLRTLSL--YGNPIEKIREY-RAVVSTMIPQLVTLDSVFILPSEKQ 175 (210)
Q Consensus 125 --~~~~~~l~~L~~L~l--~~n~l~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 175 (210)
...+...+.|+.|++ ++|.+...... -...+...++|+.|++++|.+....
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 134667789999999 88999864321 1235777899999999999987654
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.56 E-value=8.2e-08 Score=79.16 Aligned_cols=153 Identities=7% Similarity=0.082 Sum_probs=104.5
Q ss_pred cceeCCCCCccccchhhhcccCC-cc--cccCCCCCC---CCCCCCccEEEccCCccc-----cccCCchhhhhccCCCC
Q psy4162 15 IPLDLSFQQIQSLDKVAVQKLKP-NV--HRLGESPPM---LVGRYDTRSLWLSHNKIS-----LVYGLDSLVHRTILDPD 83 (210)
Q Consensus 15 ~~L~ls~n~l~~l~~~~~~~l~~-~~--~~~~~~~~~---~~~l~~L~~L~ls~n~l~-----~~~~l~~~~~~~~~~l~ 83 (210)
..+++.. +++.+....|.+ .+ .. +..++..+. +.++.+|+.+.+.+|.+. .++. ..|.+++
T Consensus 229 ~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~------~aF~~c~ 300 (401)
T 4fdw_A 229 KTIEIPE-NVSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP------YCLEGCP 300 (401)
T ss_dssp CCEECCT-TCCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT------TTTTTCT
T ss_pred CEEecCC-CccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH------HHhhCCc
Confidence 3466654 366676666653 11 10 111122222 377888999998887766 5555 8888899
Q ss_pred CCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCc-Ccc
Q psy4162 84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIP-QLV 162 (210)
Q Consensus 84 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~-~L~ 162 (210)
+|+.+.+. +.++.+....|..|.+|+.+.+..+ ++.++. ..|.++ +|+.+.+.+|.+..+.. ..+..++ .++
T Consensus 301 ~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~-~aF~~~-~L~~l~l~~n~~~~l~~---~~F~~~~~~l~ 373 (401)
T 4fdw_A 301 KLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF-SAFNNT-GIKEVKVEGTTPPQVFE---KVWYGFPDDIT 373 (401)
T ss_dssp TCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT-TSSSSS-CCCEEEECCSSCCBCCC---SSCCCSCTTCC
T ss_pred cCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH-HhCCCC-CCCEEEEcCCCCccccc---ccccCCCCCcc
Confidence 99999998 5588888888888999999998554 777775 778888 89999999988776655 3566664 577
Q ss_pred cccCCCCCHHHHHHHHHHHH
Q psy4162 163 TLDSVFILPSEKQETNALNA 182 (210)
Q Consensus 163 ~L~l~~~~~~~~~~~~~~~~ 182 (210)
.|.+..+.......+..|..
T Consensus 374 ~l~vp~~~~~~y~~a~~W~~ 393 (401)
T 4fdw_A 374 VIRVPAESVEKYKNANGWRD 393 (401)
T ss_dssp EEEECGGGHHHHHHSTTGGG
T ss_pred EEEeCHHHHHHhhhccchhh
Confidence 77777766555554444443
No 144
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.47 E-value=5.2e-08 Score=75.83 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=62.0
Q ss_pred CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCC--CccEEEccCCccCcccc-----
Q psy4162 52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFP--NLKILYLHKNQIEEYLS----- 124 (210)
Q Consensus 52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~--~L~~L~l~~n~i~~~~~----- 124 (210)
+++|+.|+|++|.|+.++++. ..+..+++|+.|+|++|+++++.. +..+. +|+.|++.+|.+....+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~----~~~~~l~~L~~L~Ls~N~i~~~~~--l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMS----SIVQKAPNLKILNLSGNELKSERE--LDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGT----THHHHSTTCCEEECTTSCCCSGGG--GGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred CCCCCEEECCCCCCCCCccch----hHHhhCCCCCEEECCCCccCCchh--hhhcccCCcceEEccCCcCccccCcchhH
Confidence 445999999999999987543 345567999999999999998733 34344 99999999999975211
Q ss_pred -ccccccCCCcCEEe
Q psy4162 125 -VFVLRRVNSLRTLS 138 (210)
Q Consensus 125 -~~~~~~l~~L~~L~ 138 (210)
...+..+|+|+.||
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 02367889999887
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.44 E-value=3.1e-07 Score=75.67 Aligned_cols=142 Identities=11% Similarity=0.044 Sum_probs=105.8
Q ss_pred cceeCCCCCccccchhhhcccCC-ccccc--CCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162 15 IPLDLSFQQIQSLDKVAVQKLKP-NVHRL--GESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI 88 (210)
Q Consensus 15 ~~L~ls~n~l~~l~~~~~~~l~~-~~~~~--~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L 88 (210)
..+.+. +.++.+....|.+.++ ..+.+ ++..+. +.+ .+|+.+.+ .+.++.+.. ..|.++.+|+.+
T Consensus 206 ~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~------~aF~~c~~L~~l 276 (401)
T 4fdw_A 206 EEVLLP-VTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKL-PNGVTNIAS------RAFYYCPELAEV 276 (401)
T ss_dssp SEEECC-TTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEE-ETTCCEECT------TTTTTCTTCCEE
T ss_pred CEEEeC-CchheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEe-CCCccEECh------hHhhCCCCCCEE
Confidence 346666 4478888877765444 11111 222222 244 67888888 566778876 899999999999
Q ss_pred ECcCCCCC-----cCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccc
Q psy4162 89 DLSFNNIK-----NVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVT 163 (210)
Q Consensus 89 ~Ls~n~i~-----~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~ 163 (210)
.+.+|.+. .++...|..|.+|+.+.+. +.++.++. ..|.++.+|+.+.+..+ +..+.. .++..+ +|+.
T Consensus 277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~-~aF~~c~~L~~l~lp~~-l~~I~~---~aF~~~-~L~~ 349 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQ-GLLGGNRKVTQLTIPAN-VTQINF---SAFNNT-GIKE 349 (401)
T ss_dssp EEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECT-TTTTTCCSCCEEEECTT-CCEECT---TSSSSS-CCCE
T ss_pred EeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhh-hhhcCCCCccEEEECcc-ccEEcH---HhCCCC-CCCE
Confidence 99988776 6788889999999999998 55888886 88999999999999554 777766 478888 8999
Q ss_pred ccCCCCCHH
Q psy4162 164 LDSVFILPS 172 (210)
Q Consensus 164 L~l~~~~~~ 172 (210)
+++.++...
T Consensus 350 l~l~~n~~~ 358 (401)
T 4fdw_A 350 VKVEGTTPP 358 (401)
T ss_dssp EEECCSSCC
T ss_pred EEEcCCCCc
Confidence 999887643
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.39 E-value=3e-07 Score=66.93 Aligned_cols=83 Identities=11% Similarity=0.071 Sum_probs=47.4
Q ss_pred CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC-CCcCCcccccCC----CCccEEEccCCc-cCccccccc
Q psy4162 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN-IKNVDKNMFTNF----PNLKILYLHKNQ-IEEYLSVFV 127 (210)
Q Consensus 54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~----~~L~~L~l~~n~-i~~~~~~~~ 127 (210)
.|+.||++++.|+...- ..+..+++|+.|+|++|. ++...-..+..+ ++|+.|++++|. |++.. +..
T Consensus 62 ~L~~LDLs~~~Itd~GL------~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~ 134 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF------DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIA 134 (176)
T ss_dssp CEEEEEEESCCCCGGGG------GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHH
T ss_pred eEeEEeCcCCCccHHHH------HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHH
Confidence 36777777776655332 445566667777776663 544322223332 356666666653 65554 345
Q ss_pred cccCCCcCEEeeeCCC
Q psy4162 128 LRRVNSLRTLSLYGNP 143 (210)
Q Consensus 128 ~~~l~~L~~L~l~~n~ 143 (210)
+..+++|+.|++++++
T Consensus 135 L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGGCTTCCEEEEESCT
T ss_pred HhcCCCCCEEECCCCC
Confidence 5566666666666665
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.24 E-value=1.2e-06 Score=75.11 Aligned_cols=59 Identities=19% Similarity=0.106 Sum_probs=35.0
Q ss_pred CCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCC
Q psy4162 105 NFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV 167 (210)
Q Consensus 105 ~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~ 167 (210)
.+++|+.++++.+....++ ..+..+++|+.|++++|.+..... ...+..+++|+.|++.
T Consensus 268 ~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~L~Ls~~~l~~~~~--~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMP--ILFPFAAQIRKLDLLYALLETEDH--CTLIQKCPNLEVLETR 326 (592)
T ss_dssp CCTTCCEEEETTCCTTTGG--GGGGGGGGCCEEEETTCCCCHHHH--HHHHTTCTTCCEEEEE
T ss_pred ccccccccCccccchhHHH--HHHhhcCCCcEEecCCCcCCHHHH--HHHHHhCcCCCEEecc
Confidence 3444555555444333333 335567788888888888553321 0246778888888887
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.22 E-value=4.9e-07 Score=77.52 Aligned_cols=106 Identities=21% Similarity=0.200 Sum_probs=50.1
Q ss_pred CccEEEccCC-ccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccc----cCCCCccEEEccCCccCcccc--c-
Q psy4162 54 DTRSLWLSHN-KISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMF----TNFPNLKILYLHKNQIEEYLS--V- 125 (210)
Q Consensus 54 ~L~~L~ls~n-~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~----~~~~~L~~L~l~~n~i~~~~~--~- 125 (210)
+|+.|++++| .++... + +..+..+++|+.|++++|.++......+ ..+++|+.|++++|. ..+.. +
T Consensus 131 ~L~~L~L~~~~~~~~~~-l----~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~ 204 (594)
T 2p1m_B 131 NFKVLVLSSCEGFSTDG-L----AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALE 204 (594)
T ss_dssp TCCEEEEESCEEEEHHH-H----HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHH
T ss_pred CCcEEeCCCcCCCCHHH-H----HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHH
Confidence 3666666665 333310 0 0223345666666666666554332212 244566666666664 11110 0
Q ss_pred cccccCCCcCEEeeeCC-CCCCccchHHHHHHhCcCcccccCCCC
Q psy4162 126 FVLRRVNSLRTLSLYGN-PIEKIREYRAVVSTMIPQLVTLDSVFI 169 (210)
Q Consensus 126 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~l~~L~~L~l~~~ 169 (210)
.....+++|+.|++++| .+.+++. .+..+++|+.|++..+
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~----~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLAT----LLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHH----HHHHCTTCSEEECSBC
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHH----HHhcCCcceEcccccc
Confidence 11233566666666666 2222222 4555666666654433
No 149
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.20 E-value=4.2e-06 Score=71.72 Aligned_cols=107 Identities=15% Similarity=0.053 Sum_probs=65.8
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEE---------------------------CcCCCCCcCCccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWID---------------------------LSFNNIKNVDKNM 102 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~---------------------------Ls~n~i~~~~~~~ 102 (210)
..+++|+.|++++|.+..++ ..+..+++|+.|+ ++++....++. .
T Consensus 217 ~~~~~L~~L~L~~~~~~~l~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~ 288 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILELV-------GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-L 288 (592)
T ss_dssp HHCTTCCEEECSSCBGGGGH-------HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-G
T ss_pred hhCCCCcEEeccCccHHHHH-------HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH-H
Confidence 34566788888777766644 2233334444444 43332223332 3
Q ss_pred ccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCC
Q psy4162 103 FTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV 167 (210)
Q Consensus 103 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~ 167 (210)
+..+++|+.|++++|.++.......+..+++|+.|+++ +.+....- ......+++|+.|++.
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l--~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGL--EVLAQYCKQLKRLRIE 350 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHH--HHHHHHCTTCCEEEEE
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHH--HHHHHhCCCCCEEEee
Confidence 56678999999999987654421335788999999998 44432211 1245778999999998
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.19 E-value=3.8e-07 Score=78.17 Aligned_cols=117 Identities=12% Similarity=0.015 Sum_probs=79.1
Q ss_pred CCCCccEEEcc--C----CccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccC-CCCccEEEccCCccCccc
Q psy4162 51 GRYDTRSLWLS--H----NKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTN-FPNLKILYLHKNQIEEYL 123 (210)
Q Consensus 51 ~l~~L~~L~ls--~----n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~~~L~~L~l~~n~i~~~~ 123 (210)
.+++|+.|+++ + +.++..+. ..-+...+..+++|+.|++++ .++......+.. +++|+.|++++|.+++..
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~-~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~ 472 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPL-DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG 472 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCT-HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred hCCCcceeEeecccCCCcccccCCch-hhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence 46779999998 4 55654331 111113355678899999977 554433222333 788999999999987654
Q ss_pred ccccc-ccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162 124 SVFVL-RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172 (210)
Q Consensus 124 ~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 172 (210)
. ..+ .++++|+.|++++|++++... ......+++|+.|++++|+..
T Consensus 473 ~-~~l~~~~~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 473 M-HHVLSGCDSLRKLEIRDCPFGDKAL--LANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp H-HHHHHHCTTCCEEEEESCSCCHHHH--HHTGGGGGGSSEEEEESSCCB
T ss_pred H-HHHHhcCCCcCEEECcCCCCcHHHH--HHHHHhCCCCCEEeeeCCCCC
Confidence 3 333 678999999999999943322 013456889999999999883
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=7.4e-07 Score=64.87 Aligned_cols=84 Identities=14% Similarity=0.066 Sum_probs=68.3
Q ss_pred CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCc-cCccccccccccC----CCcCEEeeeCCC-CCCccchHHHHHH
Q psy4162 83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQ-IEEYLSVFVLRRV----NSLRTLSLYGNP-IEKIREYRAVVST 156 (210)
Q Consensus 83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~~~~~l~ 156 (210)
..|+.|+++++.++...-..+..+++|+.|+|++|. +++.. +..+..+ ++|+.|++++|. +++..- ..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl---~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVTDKGI---IALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCCHHHH---HHGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEEEcCCCCcCCHHHH---HHHh
Confidence 479999999999887766667889999999999995 77765 4566664 479999999986 664432 3578
Q ss_pred hCcCcccccCCCCC
Q psy4162 157 MIPQLVTLDSVFIL 170 (210)
Q Consensus 157 ~l~~L~~L~l~~~~ 170 (210)
.+++|+.|++++++
T Consensus 137 ~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 HFRNLKYLFLSDLP 150 (176)
T ss_dssp GCTTCCEEEEESCT
T ss_pred cCCCCCEEECCCCC
Confidence 89999999999997
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.05 E-value=1.3e-06 Score=64.18 Aligned_cols=119 Identities=8% Similarity=-0.004 Sum_probs=80.1
Q ss_pred CcceeCCCC-CccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162 14 KIPLDLSFQ-QIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSF 92 (210)
Q Consensus 14 ~~~L~ls~n-~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~ 92 (210)
...|++++| .+..-....+...- ...++|+.|+|++|.|..-.. ..+. ..+...+.|+.|+|++
T Consensus 38 L~~L~L~~n~~i~~~g~~~l~~~L-------------~~~~~L~~L~Ls~n~i~~~g~-~~l~-~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 38 LEEVNLNNIMNIPVPTLKACAEAL-------------KTNTYVKKFSIVGTRSNDPVA-FALA-EMLKVNNTLKSLNVES 102 (185)
T ss_dssp CCEEECTTCTTCCHHHHHHHHHHH-------------TTCCSCCEEECTTSCCCHHHH-HHHH-HHHHHCSSCCEEECCS
T ss_pred CCEEEecCCCCCCHHHHHHHHHHH-------------HhCCCcCEEECcCCCCChHHH-HHHH-HHHHhCCCcCEEECcC
Confidence 455888888 88653332221100 012349999999999986321 1111 4455567899999999
Q ss_pred CCCCcCC----cccccCCCCccEEEc--cCCccCcccc---ccccccCCCcCEEeeeCCCCCCc
Q psy4162 93 NNIKNVD----KNMFTNFPNLKILYL--HKNQIEEYLS---VFVLRRVNSLRTLSLYGNPIEKI 147 (210)
Q Consensus 93 n~i~~~~----~~~~~~~~~L~~L~l--~~n~i~~~~~---~~~~~~l~~L~~L~l~~n~l~~~ 147 (210)
|.|.... ...+...++|+.|++ ++|.+..... ...+...++|+.|++++|.+...
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 9998743 233566789999999 8899987542 03345668999999999988643
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.87 E-value=4.2e-05 Score=62.05 Aligned_cols=106 Identities=13% Similarity=0.119 Sum_probs=80.0
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 129 (210)
.++..|+.+.+..+ ++.+.. ..|..+..|+.+.+.. .+..+....|..+.+|+.+.+..+.++.+++ ..|.
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~------~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~-~aF~ 307 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGS------FLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEP-RVFM 307 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECT------TTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECT-TTTT
T ss_pred cCCccceEEEcCCC-ccEeCc------cccceeehhccccccc-cceeccccccccccccccccccccccceehh-hhhc
Confidence 55667888888665 666665 7788888888888754 4777777778888888888888888888776 7788
Q ss_pred cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162 130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF 168 (210)
Q Consensus 130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~ 168 (210)
++.+|+.+.+..+ ++.+.. .++.++.+|+.+.+..
T Consensus 308 ~c~~L~~i~lp~~-l~~I~~---~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 308 DCVKLSSVTLPTA-LKTIQV---YAFKNCKALSTISYPK 342 (379)
T ss_dssp TCTTCCEEECCTT-CCEECT---TTTTTCTTCCCCCCCT
T ss_pred CCCCCCEEEcCcc-ccEEHH---HHhhCCCCCCEEEECC
Confidence 8888888888644 666766 3678888888877743
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.81 E-value=6.9e-05 Score=61.24 Aligned_cols=107 Identities=13% Similarity=0.122 Sum_probs=82.6
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 129 (210)
.++..|+.+.+..+. ..+.. ..|..+..|+.+.+. +.++.++...|..+.+|+.+.+..+ ++.++. ..|.
T Consensus 262 ~~c~~L~~i~lp~~~-~~I~~------~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~ 331 (394)
T 4gt6_A 262 DSCAYLASVKMPDSV-VSIGT------GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD-DAFA 331 (394)
T ss_dssp TTCSSCCEEECCTTC-CEECT------TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTT
T ss_pred eecccccEEeccccc-ceecC------cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH-hHhh
Confidence 566778888886543 34554 778888889998885 5677888888888999999988754 777765 7888
Q ss_pred cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCC
Q psy4162 130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFIL 170 (210)
Q Consensus 130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~ 170 (210)
++.+|+.+.+..+ +..+.. .++.++++|+.+++.++.
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~---~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPE---SAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCG---GGGTTCTTCCEEEESSCH
T ss_pred CCCCCCEEEECcc-cCEEhH---hHhhCCCCCCEEEECCce
Confidence 8899999998544 777766 478889999988887763
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.71 E-value=1e-05 Score=65.75 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=53.7
Q ss_pred CCCCCCEEECcC--CC------CCcCCcccc-cCCCCccEEEccCCccCcccc--ccccccCCCcCEEeeeCCCCCCccc
Q psy4162 81 DPDLIGWIDLSF--NN------IKNVDKNMF-TNFPNLKILYLHKNQIEEYLS--VFVLRRVNSLRTLSLYGNPIEKIRE 149 (210)
Q Consensus 81 ~l~~L~~L~Ls~--n~------i~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~ 149 (210)
.+++|+.|+|+. |. +..+.+... ..+++|+.|+++.|.+..... +.....+++|+.|+|+.|.+.+...
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 467788877753 11 111111101 246788888888887764321 1111346788888888888775421
Q ss_pred hH-HHHHHhCcCcccccCCCCCHHHH
Q psy4162 150 YR-AVVSTMIPQLVTLDSVFILPSEK 174 (210)
Q Consensus 150 ~~-~~~l~~l~~L~~L~l~~~~~~~~ 174 (210)
.. ...+..+++|+.|+++.|.+.+.
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhhcccCCcceEEECCCCcCCHH
Confidence 00 01235678888888888876544
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.67 E-value=0.0002 Score=49.32 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=45.7
Q ss_pred CEEECcCCCCC--cCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccch
Q psy4162 86 GWIDLSFNNIK--NVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY 150 (210)
Q Consensus 86 ~~L~Ls~n~i~--~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 150 (210)
..++-+++.++ .++.. + ..+++.|+|++|+|+.++. ..|..+++|+.|+|++|++......
T Consensus 11 ~~v~Cs~~~L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA-F--PVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp TEEECCSSCCCTTTSCSC-C--CTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred CEEEeCCCCCccccCCCC-C--CcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCeeccCcc
Confidence 36777777777 66653 2 3467888888888888876 7788888888889999988876553
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.65 E-value=8.9e-05 Score=60.09 Aligned_cols=99 Identities=12% Similarity=0.075 Sum_probs=80.2
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 129 (210)
.++.+|+.+.+.. .++.+.. ..|.++.+|+.+.+..+.++.+....|..+.+|+.+.+..+ ++.++. .+|.
T Consensus 260 ~~~~~l~~i~l~~-~i~~i~~------~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~ 330 (379)
T 4h09_A 260 QNCTALKTLNFYA-KVKTVPY------LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV-YAFK 330 (379)
T ss_dssp TTCTTCCEEEECC-CCSEECT------TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTT
T ss_pred ceeehhccccccc-cceeccc------cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH-HHhh
Confidence 6677899998864 4777776 88999999999999999999999989999999999999754 777775 8899
Q ss_pred cCCCcCEEeeeCCCCCCccchHHHHHHhCcCc
Q psy4162 130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQL 161 (210)
Q Consensus 130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L 161 (210)
++.+|+.+.+..+ +..+.. .++.++.-+
T Consensus 331 ~C~~L~~i~ip~~-v~~I~~---~aF~~c~~~ 358 (379)
T 4h09_A 331 NCKALSTISYPKS-ITLIES---GAFEGSSIT 358 (379)
T ss_dssp TCTTCCCCCCCTT-CCEECT---TTTTTSSCC
T ss_pred CCCCCCEEEECCc-cCEEch---hHhhCCCCC
Confidence 9999999998654 666655 356666433
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.61 E-value=9.8e-05 Score=50.93 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=21.9
Q ss_pred CCCEEECcCCCCCcCCcccccCCCCccEEEccCCcc
Q psy4162 84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI 119 (210)
Q Consensus 84 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i 119 (210)
+|+.|+|++|+|+.++...|..+++|+.|+|.+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 456666666666666655556666666666666654
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.59 E-value=9.4e-05 Score=60.42 Aligned_cols=104 Identities=14% Similarity=0.056 Sum_probs=73.3
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 129 (210)
..+..++.+.+..+. ++. ..|..+..|+.+.+..+ ++.+....|..+.+|+.+.+.. .++.++. .+|.
T Consensus 273 ~~~~~l~~~~~~~~~---i~~------~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~-~aF~ 340 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVI---VPE------KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGK-RSFR 340 (394)
T ss_dssp TTCTTCCEEEECSSE---ECT------TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECT-TTTT
T ss_pred ccccccceeccCcee---ecc------ccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhH-Hhcc
Confidence 556667776665543 232 56777788888887654 7777777788888888888864 3667765 7788
Q ss_pred cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCC
Q psy4162 130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFI 169 (210)
Q Consensus 130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~ 169 (210)
++.+|+.+.+..+ +..+.. .++.++++|+.+++..+
T Consensus 341 ~c~~L~~i~lp~~-l~~I~~---~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 341 GCTSLSNINFPLS-LRKIGA---NAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEECCCTT-CCEECT---TTBTTCTTCCEEEEEGG
T ss_pred CCCCCCEEEECcc-ccEehH---HHhhCCCCCCEEEECCC
Confidence 8888888888766 666666 46788888888777543
No 160
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.49 E-value=8e-05 Score=60.43 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=69.5
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCccccc--CCCCccEEEccC--Cc------c
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFT--NFPNLKILYLHK--NQ------I 119 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~~~~L~~L~l~~--n~------i 119 (210)
..+++|+.|.+++|.--.++ . +. +++|+.|++..+.+..-....+. .+++|+.|+|.. |. +
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~-------~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIG-------K-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCC-------S-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred hcCCCCcEEEEeCCCCceec-------c-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 55677888888777311222 1 22 57888888887776543222222 578888888753 22 1
Q ss_pred CccccccccccCCCcCEEeeeCCCCCCccchHHHHHH---hCcCcccccCCCCCHHHH
Q psy4162 120 EEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVST---MIPQLVTLDSVFILPSEK 174 (210)
Q Consensus 120 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~ 174 (210)
..+.+......+++|+.|++++|.+..... ..+. .+++|+.|+++.|.+.+.
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~---~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVV---EMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHH---HHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHH---HHHHhCccCCCCCEEECCCCCCChH
Confidence 112111111357899999999988875322 1333 477899999999887664
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.49 E-value=0.0005 Score=56.09 Aligned_cols=105 Identities=10% Similarity=0.078 Sum_probs=78.7
Q ss_pred CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccc
Q psy4162 49 LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL 128 (210)
Q Consensus 49 ~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 128 (210)
+.++.+|+.+.+. +.++.++. ..|.++.+|+.+.+..+ ++.+....|..|.+|+.+.+..+ ++.++. .+|
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~------~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~-~aF 353 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPE------SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE-SAF 353 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECT------TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG-GGG
T ss_pred cccccccccccCC-CcccccCc------eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH-hHh
Confidence 3678889999995 66788887 89999999999999764 88888888999999999999654 888876 889
Q ss_pred ccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCC
Q psy4162 129 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFI 169 (210)
Q Consensus 129 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~ 169 (210)
.++.+|+.+++.++.... ..+..+..|+.+.+..+
T Consensus 354 ~~C~~L~~i~~~~~~~~~------~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 354 SNCTALNNIEYSGSRSQW------NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTCTTCCEEEESSCHHHH------HTCBCCCCC--------
T ss_pred hCCCCCCEEEECCceeeh------hhhhccCCCCEEEeCCC
Confidence 999999999998874321 13455666777766544
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.44 E-value=0.00015 Score=59.18 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=67.9
Q ss_pred CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129 (210)
Q Consensus 50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 129 (210)
.++.+|+.+.+..+ ++.+.. ..|.++.+|+.+++.. .++.+....|..+.+|+.+.+..+ ++.++. .+|.
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~------~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~ 363 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGE------EAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGA-NAFQ 363 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECT------TTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECT-TTBT
T ss_pred cccccccccccccc-cceech------hhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehH-HHhh
Confidence 56777888777654 666665 7788888888888864 377777777888888888888665 666665 7778
Q ss_pred cCCCcCEEeeeCCCCCCccchHHHHHHhCcCccc
Q psy4162 130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVT 163 (210)
Q Consensus 130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~ 163 (210)
++.+|+.+.+..+ +..+.. .+..+++|+.
T Consensus 364 ~C~~L~~i~lp~~-~~~~~~----~F~~c~~L~~ 392 (394)
T 4fs7_A 364 GCINLKKVELPKR-LEQYRY----DFEDTTKFKW 392 (394)
T ss_dssp TCTTCCEEEEEGG-GGGGGG----GBCTTCEEEE
T ss_pred CCCCCCEEEECCC-CEEhhh----eecCCCCCcE
Confidence 8888888887654 333322 4555555543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=0.00046 Score=51.00 Aligned_cols=121 Identities=12% Similarity=0.131 Sum_probs=83.9
Q ss_pred CCccEEEccCC-ccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcc----cccCCCCccEEEccCCccCccccc--
Q psy4162 53 YDTRSLWLSHN-KISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKN----MFTNFPNLKILYLHKNQIEEYLSV-- 125 (210)
Q Consensus 53 ~~L~~L~ls~n-~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~~~~L~~L~l~~n~i~~~~~~-- 125 (210)
+.|+.|+|++| .|..-. ...+. ..+..-..|+.|+|++|+|...... .+..-..|+.|+|+.|.|......
T Consensus 41 ~~L~~L~L~~nn~igd~g-a~~la-~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKER-IRSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp SSCCEEECTTCCSSCHHH-HHHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCccEEECCCCCCCCHHH-HHHHH-HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 45999999986 776521 11111 5566668999999999999865432 233567899999999999876521
Q ss_pred -cccccCCCcCEEeeeCCC---CCCcc-chHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162 126 -FVLRRVNSLRTLSLYGNP---IEKIR-EYRAVVSTMIPQLVTLDSVFILPSEKQ 175 (210)
Q Consensus 126 -~~~~~l~~L~~L~l~~n~---l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~ 175 (210)
..+..-..|+.|+|++|. +.... ..-...+..-++|..|++..+....+.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~~~ 173 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEARH 173 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHHHH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccHHH
Confidence 234556789999998764 33221 112246788899999999988876654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.44 E-value=0.01 Score=43.72 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=66.3
Q ss_pred hccCCCCCCCEEECcCC-CCCcCC----cccccCCCCccEEEccCCccCccccc---cccccCCCcCEEeeeCCCCCCcc
Q psy4162 77 RTILDPDLIGWIDLSFN-NIKNVD----KNMFTNFPNLKILYLHKNQIEEYLSV---FVLRRVNSLRTLSLYGNPIEKIR 148 (210)
Q Consensus 77 ~~~~~l~~L~~L~Ls~n-~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~ 148 (210)
..+..-+.|+.|+|++| +|.... ...+..-..|+.|+|++|.+.+.... ..+..-+.|+.|+|++|.|....
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 44555678999999985 776532 22355678999999999999875531 23446689999999999998653
Q ss_pred ch-HHHHHHhCcCcccccCCCC
Q psy4162 149 EY-RAVVSTMIPQLVTLDSVFI 169 (210)
Q Consensus 149 ~~-~~~~l~~l~~L~~L~l~~~ 169 (210)
.. -...+..-++|+.|++.++
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCC
Confidence 31 1134566678999999754
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=83.78 E-value=1.6 Score=28.10 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=21.9
Q ss_pred CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeee
Q psy4162 94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLY 140 (210)
Q Consensus 94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~ 140 (210)
.++.+....|..|.+|+.+.+..+ ++.+.. ..|.++.+|+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~-~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYD-GMFSGCTALEKLILT 51 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCT-TSSTTCTTCCCEEEC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcH-HHHhccCCccEEEEc
Confidence 344444444555555555555432 344443 445555555555554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=82.44 E-value=2.2 Score=27.41 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=40.5
Q ss_pred CCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCc
Q psy4162 62 HNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQ 118 (210)
Q Consensus 62 ~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~ 118 (210)
+..++.+.. ..|.++..|+.+.+.. .++.+....|..|.+|+.+.+....
T Consensus 5 g~~vt~I~~------~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDK------SLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCS------CTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecH------HHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCC
Confidence 345666666 8899999999999976 4778888889999999999886653
Done!