RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4162
(210 letters)
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 95.5 bits (238), Expect = 4e-25
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
++ S N+I + G L L ++ N I + + + P+L L L
Sbjct: 45 DAIDFSDNEIRKLDGFPLLRRLKTLL--------VNNNRICRIGEGLDQALPDLTELILT 96
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ 175
N + E + L + SL L + NP+ + YR V +PQ+ LD + E+Q
Sbjct: 97 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQ 156
Query: 176 ETNAL 180
E +
Sbjct: 157 EAEKM 161
Score = 34.6 bits (80), Expect = 0.011
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIE--EYLSVFVLRRVNSLRTLSLYGNPIEK 146
L+ I+ + +TN + L L +I E L ++ + N I K
Sbjct: 3 KLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLG----ATLDQFDAIDFSDNEIRK 56
Query: 147 IR 148
+
Sbjct: 57 LD 58
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 93.3 bits (232), Expect = 2e-24
Identities = 36/173 (20%), Positives = 76/173 (43%), Gaps = 11/173 (6%)
Query: 7 TSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKIS 66
+ +D + +I L+L + ++ ++ + K N ++ V + L L + +
Sbjct: 6 SGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFV---NLEFLSLINVGLI 62
Query: 67 LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVF 126
V L L + ++LS N I + PNL L L N++++ ++
Sbjct: 63 SVSNLPKLPK--------LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLE 114
Query: 127 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNA 179
L+++ L++L L+ + + +YR V ++PQL LD E +++A
Sbjct: 115 PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSDA 167
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 87.8 bits (218), Expect = 2e-22
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
L + ++ + L L L+ LS N + + + PNL L L
Sbjct: 45 EFLSTINVGLTSIANLPKLNKLKKLE--------LSDNRVSGGLEVLAEKCPNLTHLNLS 96
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV 167
N+I++ ++ L+++ +L++L L+ + + +YR V ++PQL LD
Sbjct: 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 86.3 bits (214), Expect = 2e-21
Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 24/147 (16%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILD---------------PDLIGWIDLSFNNIKNVDK 100
+ L LS N I + L + + IL D + + +S+N I ++
Sbjct: 51 KHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG 110
Query: 101 NMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR-------EYRAV 153
NL++LY+ N+I + + L ++ L L L GNP+ EYR
Sbjct: 111 --IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168
Query: 154 VSTMIPQLVTLDSVFILPSEKQETNAL 180
V +P L LD + + E+++ N
Sbjct: 169 VVKRLPNLKKLDGMPVDVDEREQANVA 195
Score = 44.3 bits (105), Expect = 5e-06
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
I+ +D + + K L L N IE + L + +LR LSL N I+KI
Sbjct: 31 HGMIPPIEKMDATL-STLKACKHLALSTNNIE---KISSLSGMENLRILSLGRNLIKKI 85
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 77.5 bits (190), Expect = 7e-17
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 40 HRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILD---------PDLIG---- 86
L E+ + + D R L L+H ++++ L+ L+ T LD P +
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRC 487
Query: 87 --WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
+ S N ++NVD N P L+ L L N++++ ++ L L L+L GN +
Sbjct: 488 LEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
Query: 145 EKIREYRAVVSTMIPQLVTLDS 166
+ + ++ M+P + ++ +
Sbjct: 546 CQEEGIQERLAEMLPSVSSILT 567
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 68.5 bits (168), Expect = 5e-14
Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 29/161 (18%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRL----------GESPPMLVGRYDTRSLWLSHNKIS 66
L+L ++QSL KL + +L G G + L LS N +
Sbjct: 33 LELESNKLQSLPHGVFDKL-TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 67 LV----YGLDSLVH--------RTILDPDLIG------WIDLSFNNIKNVDKNMFTNFPN 108
+ GL+ L H + + + + ++D+S + + +F +
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
L++L + N +E + + +L L L +E++
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192
Score = 63.1 bits (154), Expect = 3e-12
Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 22/129 (17%)
Query: 56 RSLWLSHNKISLV-----YGLDSLVH--------RTILDPDLIG------WIDLSFNNIK 96
L +SH + GL SL + PD+ ++DLS ++
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 97 NVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVST 156
+ F + +L++L + N L F + +NSL+ L N I ++ +
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKK--QELQH 245
Query: 157 MIPQLVTLD 165
L L+
Sbjct: 246 FPSSLAFLN 254
Score = 60.4 bits (147), Expect = 3e-11
Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 16/116 (13%)
Query: 54 DTRSLWLSHNKISLVYG--LDSLVHRTILDPDLIGWIDLSFNNI--KNVDKNMFTNFPNL 109
L L NK+ + D L T L LS N + K +L
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKL--------SLSSNGLSFKGCCSQSDFGTTSL 80
Query: 110 KILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
K L L N + S F + L L + ++++ E+ +S + L+ LD
Sbjct: 81 KYLDLSFNGVITMSSNF--LGLEQLEHLDFQHSNLKQMSEFSVFLS--LRNLIYLD 132
Score = 47.3 bits (113), Expect = 9e-07
Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 34/109 (31%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
LDLS Q++ L A L L + L +SHN + L
Sbjct: 180 LDLSQCQLEQLSPTAFNSL----SSL-------------QVLNMSHNNFFSLDTFPYKCL 222
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFP-NLKILYLHKNQI 119
+SL +D S N+I K +FP +L L L +N
Sbjct: 223 NSLQV-----------LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 36.9 bits (86), Expect = 0.003
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 106 FPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ L L N+++ L V ++ L LSL N +
Sbjct: 27 PSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFK 67
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 68.2 bits (167), Expect = 8e-14
Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 34/133 (25%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
L ++ + ++ +AV+ L L R L LS+N IS + + L
Sbjct: 229 LSITHCNLTAVPYLAVRHLV----YL-------------RFLNLSYNPISTIEGSMLHEL 271
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
L I L + V+ F L++L + NQ+ L V V
Sbjct: 272 LRLQE-----------IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL-TTLEESVFHSV 319
Query: 132 NSLRTLSLYGNPI 144
+L TL L NP+
Sbjct: 320 GNLETLILDSNPL 332
Score = 67.0 bits (164), Expect = 2e-13
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 34/138 (24%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
LDL +I++L++ P L L L+ N +S V L
Sbjct: 37 LDLGKNRIKTLNQDEFASF-----------PHL------EELELNENIVSAVEPGAFNNL 79
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
+L + L N +K + +FT NL L + +N+I L ++ + +
Sbjct: 80 FNLRT-----------LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDL 127
Query: 132 NSLRTLSLYGNPIEKIRE 149
+L++L + N + I
Sbjct: 128 YNLKSLEVGDNDLVYISH 145
Score = 66.7 bits (163), Expect = 3e-13
Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 34/136 (25%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
L+L+ + +++ A L L R+L L N++ L+ GL
Sbjct: 61 LELNENIVSAVEPGAFNNLF----NL-------------RTLGLRSNRLKLIPLGVFTGL 103
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
+L +D+S N I + MF + NLK L + N + +S +
Sbjct: 104 SNLTK-----------LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGL 151
Query: 132 NSLRTLSLYGNPIEKI 147
NSL L+L + I
Sbjct: 152 NSLEQLTLEKCNLTSI 167
Score = 66.7 bits (163), Expect = 3e-13
Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 20/143 (13%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRL--------GESPPMLVGRYDTRSLWLSHNKISLV 68
L L I ++ + ++L + L P + + SL ++H ++ V
Sbjct: 181 LRLRHLNINAIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239
Query: 69 --YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVF 126
+ LV+ L+ LS+N I ++ +M L+ + L Q+ + +
Sbjct: 240 PYLAVRHLVYLRFLN--------LSYNPISTIEGSMLHELLRLQEIQLVGGQLAV-VEPY 290
Query: 127 VLRRVNSLRTLSLYGNPIEKIRE 149
R +N LR L++ GN + + E
Sbjct: 291 AFRGLNYLRVLNVSGNQLTTLEE 313
Score = 65.1 bits (159), Expect = 1e-12
Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 34/133 (25%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
LD+S +I L Q L + L +SL + N + + GL
Sbjct: 109 LDISENKIVILLDYMFQDL----YNL-------------KSLEVGDNDLVYISHRAFSGL 151
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
+SL + L N+ ++ ++ L +L L I + + +R+
Sbjct: 152 NSLEQ-----------LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRL 199
Query: 132 NSLRTLSLYGNPI 144
L+ L + P
Sbjct: 200 YRLKVLEISHWPY 212
Score = 63.6 bits (155), Expect = 3e-12
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
+TR L L N+I + D L+ ++L+ N + V+ F N NL+ L
Sbjct: 33 ETRLLDLGKNRIKTLNQ-DEFASFPHLE-----ELELNENIVSAVEPGAFNNLFNLRTLG 86
Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
L N+++ + + V +++L L + N I + +
Sbjct: 87 LRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLD 121
Score = 63.2 bits (154), Expect = 5e-12
Identities = 24/151 (15%), Positives = 45/151 (29%), Gaps = 36/151 (23%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
L L + S+ A+ L L L L H I+ + L
Sbjct: 157 LTLEKCNLTSIPTEALSHL-----------HGL------IVLRLRHLNINAIRDYSFKRL 199
Query: 72 DSLVH--------RTILDPDLIG-----WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQ 118
L + P+ + + ++ N+ V + L+ L L N
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259
Query: 119 IEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
I + +L + L+ + L G + +
Sbjct: 260 I-STIEGSMLHELLRLQEIQLVGGQLAVVEP 289
Score = 58.2 bits (141), Expect = 2e-10
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 82 PDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYG 141
P +DL N IK ++++ F +FP+L+ L L++N + + + +LRTL L
Sbjct: 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRS 89
Query: 142 NPIEKIRE 149
N ++ I
Sbjct: 90 NRLKLIPL 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 67.2 bits (164), Expect = 2e-13
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
T L LSHN +S + + T L + LS N++ + F PNL+ L
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLH-----SLLLSHNHLNFISSEAFVPVPNLRYLD 94
Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
L N + L F+ + +L L LY N I +
Sbjct: 95 LSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDR 129
Score = 66.0 bits (161), Expect = 4e-13
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 33/138 (23%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
LDLS + L + L SL LSHN ++ + +
Sbjct: 44 LDLSHNNLSRLRAEWTPT---RLTNL-------------HSLLLSHNHLNFISSEAFVPV 87
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
+L + +DLS N++ +D+ +F++ L++L L+ N I + +
Sbjct: 88 PNLRY-----------LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDM 135
Query: 132 NSLRTLSLYGNPIEKIRE 149
L+ L L N I +
Sbjct: 136 AQLQKLYLSQNQISRFPV 153
Score = 54.1 bits (130), Expect = 4e-09
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 39/138 (28%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
LDLS + +LD+ L+ L L L +N I +V +
Sbjct: 93 LDLSSNHLHTLDEFLFSDLQ----AL-------------EVLLLYNNHIVVVDRNAFEDM 135
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNF---PNLKILYLHKNQIEEYLSVFVL 128
L + LS N I + + P L +L L N++++ L + L
Sbjct: 136 AQLQK-----------LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDL 183
Query: 129 RRVNSL--RTLSLYGNPI 144
+++ + L L+ NP+
Sbjct: 184 QKLPAWVKNGLYLHNNPL 201
Score = 36.4 bits (84), Expect = 0.004
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 106 FPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+L L N + + + R+ +L +L L N + I
Sbjct: 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI 79
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 67.1 bits (164), Expect = 2e-13
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 19/142 (13%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRL---------GESPPMLVGRYDTRSLWLSHNKISL 67
L L I+S+ A ++ P++ RL S G ++ + L L I
Sbjct: 152 LWLRNNPIESIPSYAFNRV-PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210
Query: 68 VYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFV 127
+ L LV L+ +S N+ + F +LK L++ +Q+ +
Sbjct: 211 MPNLTPLVGLEELE--------MSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-SLIERNA 261
Query: 128 LRRVNSLRTLSLYGNPIEKIRE 149
+ SL L+L N + +
Sbjct: 262 FDGLASLVELNLAHNNLSSLPH 283
Score = 65.9 bits (161), Expect = 5e-13
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 17/102 (16%)
Query: 54 DTRSLWLSHNKISLVY-----GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPN 108
+TR L L N I ++ L L + L N+I+ ++ F +
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLE-----------VLQLGRNSIRQIEVGAFNGLAS 124
Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY 150
L L L N + + ++ LR L L NPIE I Y
Sbjct: 125 LNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSY 165
Score = 64.4 bits (157), Expect = 2e-12
Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 25/140 (17%)
Query: 17 LDLS-FQQIQSLDKVAVQKLKPNVHRLG------ESPPMLVGRYDTRSLWLSHNKISLV- 68
LDL ++++ + + A + L N+ L + P L L +S N +
Sbjct: 176 LDLGELKKLEYISEGAFEGL-FNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIR 234
Query: 69 ----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLS 124
+GL SL + + + + +++N F +L L L N + L
Sbjct: 235 PGSFHGLSSLKK-----------LWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLP 282
Query: 125 VFVLRRVNSLRTLSLYGNPI 144
+ + L L L+ NP
Sbjct: 283 HDLFTPLRYLVELHLHHNPW 302
Score = 64.0 bits (156), Expect = 3e-12
Identities = 31/137 (22%), Positives = 44/137 (32%), Gaps = 35/137 (25%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
L+L IQ + + L L L L N I + GL
Sbjct: 80 LNLMENNIQMIQADTFRHL-----------HHL------EVLQLGRNSIRQIEVGAFNGL 122
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
SL ++L N + + F L+ L+L N IE + + RV
Sbjct: 123 ASLNT-----------LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRV 170
Query: 132 NSLRTLSLYG-NPIEKI 147
SL L L +E I
Sbjct: 171 PSLMRLDLGELKKLEYI 187
Score = 39.0 bits (91), Expect = 6e-04
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ + + V + + N + L L +N I+ + R ++ L L L N I +I
Sbjct: 59 VVCTRRGLSEVPQGIP---SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQI 114
Query: 148 RE 149
Sbjct: 115 EV 116
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 67.1 bits (164), Expect = 2e-13
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
R L L+ + + L L+ LD LS N++ + F +L+ L++
Sbjct: 188 RYLNLAMCNLREIPNLTPLIKLDELD--------LSGNHLSAIRPGSFQGLMHLQKLWMI 239
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
++QI + + + SL ++L N + +
Sbjct: 240 QSQI-QVIERNAFDNLQSLVEINLAHNNLTLLPH 272
Score = 65.2 bits (159), Expect = 1e-12
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 17/99 (17%)
Query: 54 DTRSLWLSHNKISLVY-----GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPN 108
+TR L L N+I ++ L L + LS N+I+ ++ F N
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLE-----------ILQLSRNHIRTIEIGAFNGLAN 113
Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
L L L N++ + ++ L+ L L NPIE I
Sbjct: 114 LNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIESI 151
Score = 64.8 bits (158), Expect = 1e-12
Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 25/140 (17%)
Query: 17 LDLSFQ-QIQSLDKVAVQKLKPNVHRLG------ESPPMLVGRYDTRSLWLSHNKISLV- 68
LDL ++ + + A + L N+ L P L L LS N +S +
Sbjct: 165 LDLGELKRLSYISEGAFEGL-SNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR 223
Query: 69 ----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLS 124
GL L + + + I+ +++N F N +L + L N + L
Sbjct: 224 PGSFQGLMHLQK-----------LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLP 271
Query: 125 VFVLRRVNSLRTLSLYGNPI 144
+ ++ L + L+ NP
Sbjct: 272 HDLFTPLHHLERIHLHHNPW 291
Score = 64.4 bits (157), Expect = 2e-12
Identities = 33/139 (23%), Positives = 49/139 (35%), Gaps = 35/139 (25%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
L+L QIQ + + + L+ L L LS N I + GL
Sbjct: 69 LNLHENQIQIIKVNSFKHLR----HL-------------EILQLSRNHIRTIEIGAFNGL 111
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
+L ++L N + + F LK L+L N IE + + R+
Sbjct: 112 ANLNT-----------LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRI 159
Query: 132 NSLRTLSLYG-NPIEKIRE 149
SLR L L + I E
Sbjct: 160 PSLRRLDLGELKRLSYISE 178
Score = 38.6 bits (90), Expect = 8e-04
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ N++ V + N ++L LH+NQI+ + V + + L L L N I I
Sbjct: 48 VICVRKNLREVPDGIS---TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTI 103
Query: 148 RE 149
Sbjct: 104 EI 105
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 66.3 bits (162), Expect = 3e-13
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 54 DTRSLWLSHNKISLV--YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
+SL LS+N+I+ + L V+ L L+ N I ++++ F++ +L+
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQAL--------VLTSNGINTIEEDSFSSLGSLEH 104
Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRA 152
L L N + LS + ++SL L+L GNP + + E
Sbjct: 105 LDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL 144
Score = 57.8 bits (140), Expect = 3e-10
Identities = 31/192 (16%), Positives = 58/192 (30%), Gaps = 40/192 (20%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI------SLVYG 70
LDLS+ + +L + L L L L N SL
Sbjct: 105 LDLSYNYLSNLSSSWFKPLS----SL-------------TFLNLLGNPYKTLGETSLFSH 147
Query: 71 LDSLVHRTILDPDLIGWI--------------DLSFNNIKNVDKNMFTNFPNLKILYLHK 116
L L + + D I ++ +++++ + + N+ L LH
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207
Query: 117 NQIEEYLSVFVLRRVNSLRTLSLYGNPIEK--IREYRAVVSTMIPQLVTLDSVFILPSEK 174
Q L + +S+ L L ++ E + + + T +V I
Sbjct: 208 KQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266
Query: 175 QETNALNAEIRS 186
+ L +I
Sbjct: 267 FQVMKLLNQISG 278
Score = 55.5 bits (134), Expect = 2e-09
Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 58/161 (36%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
LDLS +I + +Q+ L ++L L+ N I+ + L
Sbjct: 57 LDLSNNRITYISNSDLQRC----VNL-------------QALVLTSNGINTIEEDSFSSL 99
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE---------- 121
SL H +DLS+N + N+ + F +L L L N +
Sbjct: 100 GSLEH-----------LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148
Query: 122 ---------------YLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ + L L + + ++
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189
Score = 49.3 bits (118), Expect = 2e-07
Identities = 10/94 (10%), Positives = 30/94 (31%), Gaps = 4/94 (4%)
Query: 56 RSLWLSHNKISLV--YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
L L + L+ +D L+ F+ + + N + +
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260
Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ + + + + +++ L L N ++ +
Sbjct: 261 ITDESLFQVMKLL--NQISGLLELEFSRNQLKSV 292
Score = 47.8 bits (114), Expect = 6e-07
Identities = 20/129 (15%), Positives = 44/129 (34%), Gaps = 21/129 (16%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV--YGLDSL 74
L L +Q L ++ V + L L + L +
Sbjct: 203 LILHMKQHILLLEIFVDVT----SSV-------------ECLELRDTDLDTFHFSELSTG 245
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
+++ + ++ ++ V K + L L +NQ+ + + + R+ SL
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQL-KSVPDGIFDRLTSL 303
Query: 135 RTLSLYGNP 143
+ + L+ NP
Sbjct: 304 QKIWLHTNP 312
Score = 37.4 bits (87), Expect = 0.002
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
S ++ ++ + +K L L N+I +S L+R +L+ L L N I I
Sbjct: 37 KGSSGSLNSIPSGLTEA---VKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTI 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 64.7 bits (158), Expect = 7e-13
Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 13/148 (8%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
SL+L +NKI+ + L L L L N I ++ L+ LYL
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLS--------LEDNQISDIV--PLAGLTKLQNLYLS 186
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ 175
KN I + + L + +L L L+ + + D + P
Sbjct: 187 KNHISDLRA---LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 243
Query: 176 ETNALNAEIRSYLLPKYEKLEAATFKRT 203
+ + LP++ + F +
Sbjct: 244 DDGDYEKPNVKWHLPEFTNEVSFIFYQP 271
Score = 54.7 bits (132), Expect = 2e-09
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
L+L NK+ + L L L L N I +++ + P L+ LYL
Sbjct: 93 GWLFLDENKVKDLSSLKDLKKLKSLS--------LEHNGISDING--LVHLPQLESLYLG 142
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
N+I + VL R+ L TLSL N I I
Sbjct: 143 NNKIT---DITVLSRLTKLDTLSLEDNQISDI 171
Score = 50.1 bits (120), Expect = 8e-08
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 13/92 (14%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
L ++ + L + + ++IK+V PN+ L+L+
Sbjct: 27 IKDNLKKKSVTDAVTQNELNSIDQII--------ANNSDIKSVQ--GIQYLPNVTKLFLN 76
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
N++ + L + +L L L N ++ +
Sbjct: 77 GNKLT---DIKPLANLKNLGWLFLDENKVKDL 105
Score = 41.6 bits (98), Expect = 8e-05
Identities = 11/90 (12%), Positives = 30/90 (33%), Gaps = 13/90 (14%)
Query: 58 LWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKN 117
I ++ D+ + L ++ + ++ + + +
Sbjct: 7 TITVPTPIKQIFSDDAFAETIKDN--------LKKKSVTDAVT--QNELNSIDQIIANNS 56
Query: 118 QIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
I+ SV ++ + ++ L L GN + I
Sbjct: 57 DIK---SVQGIQYLPNVTKLFLNGNKLTDI 83
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 64.2 bits (157), Expect = 1e-12
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 54 DTRSLWLSHNKISLVYG--LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
++ ++L N+IS V + + TIL L N + +D FT L+
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILW--------LHSNVLARIDAAAFTGLALLEQ 84
Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
L L N + + L TL L ++++
Sbjct: 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120
Score = 64.2 bits (157), Expect = 1e-12
Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 34/136 (25%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
L L +Q L + L L + L+L N + + L
Sbjct: 110 LHLDRCGLQELGPGLFRGL----AAL-------------QYLYLQDNALQALPDDTFRDL 152
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
+L + L N I +V + F +L L LH+N++ ++ R +
Sbjct: 153 GNL-----------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDL 200
Query: 132 NSLRTLSLYGNPIEKI 147
L TL L+ N + +
Sbjct: 201 GRLMTLYLFANNLSAL 216
Score = 64.2 bits (157), Expect = 1e-12
Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 37/152 (24%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
+ L +I + + + N+ LWL N ++ + GL
Sbjct: 37 IFLHGNRISHVPAASFRAC-RNL----------------TILWLHSNVLARIDAAAFTGL 79
Query: 72 DSL--------VHRTILDPDLIG------WIDLSFNNIKNVDKNMFTNFPNLKILYLHKN 117
L +DP + L ++ + +F L+ LYL N
Sbjct: 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139
Query: 118 QIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
+ + L R + +L L L+GN I + E
Sbjct: 140 AL-QALPDDTFRDLGNLTHLFLHGNRISSVPE 170
Score = 60.8 bits (148), Expect = 2e-11
Identities = 32/132 (24%), Positives = 46/132 (34%), Gaps = 34/132 (25%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
L L +Q+L + L L L+L N+IS V GL
Sbjct: 134 LYLQDNALQALPDDTFRDL----GNL-------------THLFLHGNRISSVPERAFRGL 176
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
SL + L N + +V + F + L LYL N + L L +
Sbjct: 177 HSLDR-----------LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPL 224
Query: 132 NSLRTLSLYGNP 143
+L+ L L NP
Sbjct: 225 RALQYLRLNDNP 236
Score = 53.1 bits (128), Expect = 9e-09
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 82 PDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYG 141
P I L N I +V F NL IL+LH N + + + L L L
Sbjct: 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSD 89
Query: 142 NPIEKIREYRAVVSTMIPQLVTLD 165
N ++R + +L TL
Sbjct: 90 NA--QLRSVDPATFHGLGRLHTLH 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 62.8 bits (153), Expect = 2e-12
Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 27/133 (20%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYG-LDSL 74
L L+ + L+ + K P + ++ S+NKI + G +
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKI----------------NFSNNKITDIEEGAFEGA 80
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
+ L+ N ++NV MF +LK L L N+I + ++S+
Sbjct: 81 SGVNEIL--------LTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSV 131
Query: 135 RTLSLYGNPIEKI 147
R LSLY N I +
Sbjct: 132 RLLSLYDNQITTV 144
Score = 44.3 bits (105), Expect = 7e-06
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 88 IDLSFNNIKNVDKN-MFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146
+ L+ N ++ +F P L+ + N+I + + + + + L N +E
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLEN 95
Query: 147 IRE 149
++
Sbjct: 96 VQH 98
Score = 37.3 bits (87), Expect = 0.001
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 27/103 (26%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL-DSL 74
+ L+ +++++ + L L ++L L N+I + L
Sbjct: 86 ILLTSNRLENVQHKMFKGL----ESL-------------KTLMLRSNRITCVGNDSFIGL 128
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKN 117
+L L N I V F +L L L N
Sbjct: 129 SSVRLLS--------LYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 32.7 bits (75), Expect = 0.051
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 107 PNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
L L+ N+ + + +++ LR ++ N I I E
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE 74
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 63.5 bits (155), Expect = 3e-12
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
DT L L +NKI+ + + L + L N I + F L+ LY
Sbjct: 53 DTALLDLQNNKITEIKD-GDFKNLKNLH-----TLILINNKISKISPGAFAPLVKLERLY 106
Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY 150
L KNQ++E L + + +L+ L ++ N I K+R+
Sbjct: 107 LSKNQLKE-LPEKMPK---TLQELRVHENEITKVRKS 139
Score = 61.6 bits (150), Expect = 1e-11
Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 41/157 (26%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
+ ++ I ++ + L L L NKI+ V GL
Sbjct: 176 IRIADTNITTIPQGLPPSL--------------------TELHLDGNKITKVDAASLKGL 215
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
++L + LSFN+I VD N P+L+ L+L+ N++ +
Sbjct: 216 NNLAK-----------LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL--ADH 262
Query: 132 NSLRTLSLYGNPIEKIREY---RAVVSTMIPQLVTLD 165
++ + L+ N I I +T +
Sbjct: 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299
Score = 59.2 bits (144), Expect = 7e-11
Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 31/134 (23%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYG--LDSL 74
L L +I + A L +L L+LS N++ + +L
Sbjct: 81 LILINNKISKISPGAFAPLV----KL-------------ERLYLSKNQLKELPEKMPKTL 123
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE-YLSVFVLRRVNS 133
+ + N I V K++F + ++ L N ++ + + +
Sbjct: 124 QE-----------LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 134 LRTLSLYGNPIEKI 147
L + + I I
Sbjct: 173 LSYIRIADTNITTI 186
Score = 58.9 bits (143), Expect = 1e-10
Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 39/138 (28%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVY------- 69
L + +I + K L +++ + L N +
Sbjct: 126 LRVHENEITKVRKSVFNGL----NQM-------------IVVELGTNPLKSSGIENGAFQ 168
Query: 70 GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129
G+ L +I ++ NI + + + P+L L+L N+I + + L+
Sbjct: 169 GMKKLS-----------YIRIADTNITTIPQGL---PPSLTELHLDGNKITK-VDAASLK 213
Query: 130 RVNSLRTLSLYGNPIEKI 147
+N+L L L N I +
Sbjct: 214 GLNNLAKLGLSFNSISAV 231
Score = 56.2 bits (136), Expect = 8e-10
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 22/100 (22%)
Query: 56 RSLWLSHNKISLV-----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLK 110
L LS N IS V L + L+ N + V + ++
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLR-----------ELHLNNNKLVKVPGG-LADHKYIQ 266
Query: 111 ILYLHKNQIEE-----YLSVFVLRRVNSLRTLSLYGNPIE 145
++YLH N I + + S +SL+ NP++
Sbjct: 267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306
Score = 50.4 bits (121), Expect = 8e-08
Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 39/137 (28%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV----YGLD 72
L LSF I ++D ++ N L R L L++NK+ V
Sbjct: 221 LGLSFNSISAVDNGSLA----NTPHL-------------RELHLNNNKLVKVPGGLADHK 263
Query: 73 SLVHRTILDPDLIGWIDLSFNNIKNVDKNMF------TNFPNLKILYLHKNQIEEY-LSV 125
+ + L NNI + N F T + + L N ++ + +
Sbjct: 264 YIQV-----------VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312
Query: 126 FVLRRVNSLRTLSLYGN 142
R V + L
Sbjct: 313 STFRCVYVRAAVQLGNY 329
Score = 36.5 bits (85), Expect = 0.004
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ S ++ V K++ P+ +L L N+I E + + + +L TL L N I KI
Sbjct: 36 VQCSDLGLEKVPKDLP---PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKI 91
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 63.6 bits (155), Expect = 3e-12
Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 28/133 (21%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV--YGLDSL 74
DLS +I +L K D L L+ N+I+ + L
Sbjct: 280 CDLSKSKIFALLKSVFSHFT-----------------DLEQLTLAQNEINKIDDNAFWGL 322
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
H L+ LS N + ++D MF N L++L L N I L + +L
Sbjct: 323 THLLKLN--------LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNL 373
Query: 135 RTLSLYGNPIEKI 147
+ L+L N ++ +
Sbjct: 374 KELALDTNQLKSV 386
Score = 60.5 bits (147), Expect = 3e-11
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 20/115 (17%)
Query: 54 DTRSLWLSHNKISLV-----YGLDSLVH--------RTILDPDL------IGWIDLSFNN 94
+ LS N I+ + L L ++ + + + L +N
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 95 IKNVDKNMFTNFPNLKILYLHKNQIEE-YLSVFVLRRVNSLRTLSLYGNPIEKIR 148
++ F NL++L L + ++ LS + + SL L L N I+KI+
Sbjct: 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145
Score = 58.6 bits (142), Expect = 2e-10
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 20/143 (13%)
Query: 17 LDLSFQQIQSLDKVA------VQKLKPNVHRLGESPPMLVGRYDT--RSLWLSHNKI-SL 67
+DLS I L++ + +Q LK G R + L L +N+ L
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94
Query: 68 VYG-LDSLVHRTILDPDLIGWIDLSFNNIKN--VDKNMFTNFPNLKILYLHKNQIEEYLS 124
G + L + +L L+ N+ + N F +L++L L N I++
Sbjct: 95 ETGAFNGLANLEVLT--------LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146
Query: 125 VFVLRRVNSLRTLSLYGNPIEKI 147
+ L L N ++ I
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSI 169
Score = 58.2 bits (141), Expect = 2e-10
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 28/129 (21%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYG--LDSL 74
L L+ +I +D A L ++ L LS N + + ++L
Sbjct: 304 LTLAQNEINKIDDNAFWGL-THL----------------LKLNLSQNFLGSIDSRMFENL 346
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
+LD LS+N+I+ + F PNLK L L NQ++ + + R+ SL
Sbjct: 347 DKLEVLD--------LSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSL 397
Query: 135 RTLSLYGNP 143
+ + L+ NP
Sbjct: 398 QKIWLHTNP 406
Score = 53.6 bits (129), Expect = 8e-09
Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 23/140 (16%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVY------- 69
LDLS + +SL LS++
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTK--------------IQSLILSNSYNMGSSFGHTNFK 262
Query: 70 GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129
D+ + + + DLS + I + K++F++F +L+ L L +N+I + +
Sbjct: 263 DPDNFTFKGLEASGVK-TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK-IDDNAFW 320
Query: 130 RVNSLRTLSLYGNPIEKIRE 149
+ L L+L N + I
Sbjct: 321 GLTHLLKLNLSQNFLGSIDS 340
Score = 43.6 bits (103), Expect = 2e-05
Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 16/119 (13%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDP-DLIGWIDLSFNNIKNVDKNMFTNFP--NLKIL 112
L L N I + + +DL+FN +K++ + NF + +L
Sbjct: 132 EMLVLRDNNIK------KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185
Query: 113 YLHKNQIEE-------YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL 164
L +++ + + S+ TL L GN ++ R + ++ +L
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244
Score = 29.7 bits (67), Expect = 0.60
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 107 PNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIE 145
++ + L N I E L+ R+ L+ L +
Sbjct: 30 AHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPG 67
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 63.9 bits (156), Expect = 3e-12
Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 13/139 (9%)
Query: 17 LDLSFQQIQSLDKVAVQKLK-PNVH-------RLGESPPMLVGRYDTRSLWLSHNKISLV 68
LDLS + + L ++ +G + + L H+ + V
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414
Query: 69 YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL 128
+ + L ++D+S+ N K +F +L L + N ++ V
Sbjct: 415 TEFSAFLSLEKLL-----YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469
Query: 129 RRVNSLRTLSLYGNPIEKI 147
+L L L +E+I
Sbjct: 470 ANTTNLTFLDLSKCQLEQI 488
Score = 63.5 bits (155), Expect = 3e-12
Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 34/155 (21%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVY-----GL 71
LDLS +I++++ A L H L +L L+ N I GL
Sbjct: 61 LDLSRCEIETIEDKAWHGL----HHL-------------SNLILTGNPIQSFSPGSFSGL 103
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
SL + + + +++ LK L + N I +
Sbjct: 104 TSLEN-----------LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152
Query: 132 NSLRTLSLYGNPIEKIREY-RAVVSTMIPQLVTLD 165
+L + L N I+ I + ++LD
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187
Score = 59.7 bits (145), Expect = 8e-11
Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 20/111 (18%)
Query: 56 RSLWLSHNKISLVY-----GLDSLVH--------RTILDPDLIG------WIDLSFNNIK 96
L +S+ + + GL SL + ++ ++DLS ++
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486
Query: 97 NVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ +F L++L + N + +L ++ SL TL N IE
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIETS 536
Score = 58.9 bits (143), Expect = 1e-10
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 17/94 (18%)
Query: 56 RSLWLSHNKISLV-----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLK 110
L LS ++ + L L +++S NN+ +D + + +L
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQ-----------LLNMSHNNLLFLDSSHYNQLYSLS 524
Query: 111 ILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
L N+I E + SL +L N +
Sbjct: 525 TLDCSFNRI-ETSKGILQHFPKSLAFFNLTNNSV 557
Score = 53.5 bits (129), Expect = 9e-09
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
IDLSFN +K + F+NF L+ L L + +IE + ++ L L L GNPI+
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSF 95
Score = 52.0 bits (125), Expect = 3e-08
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNF--PNLKILY 113
+SL L+ NK S+ + +L P L ++DLS N + +++ +L+ L
Sbjct: 331 KSLTLTMNKGSISFKKVAL-------PSLS-YLDLSRNALSFSGCCSYSDLGTNSLRHLD 382
Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
L N + F + L+ L + ++++ E+ A +S + +L+ LD
Sbjct: 383 LSFNGAIIMSANF--MGLEELQHLDFQHSTLKRVTEFSAFLS--LEKLLYLD 430
Score = 47.3 bits (113), Expect = 1e-06
Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 12/140 (8%)
Query: 17 LDLSFQQIQSLDKVAVQKLKP-------NVHRLGESPPMLVGRYDTRSLWLSHNKISLVY 69
LD+S I + A Q +K N + L L +
Sbjct: 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245
Query: 70 GLDSLVHRTI--LDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFV 127
L+ + L I L++ N + D F N+ + L I+ +
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK---YLED 302
Query: 128 LRRVNSLRTLSLYGNPIEKI 147
+ + ++LS+ +++
Sbjct: 303 VPKHFKWQSLSIIRCQLKQF 322
Score = 34.2 bits (79), Expect = 0.022
Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 28/139 (20%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
+DLS+ IQ++ +Q L+ N SL +S N I +
Sbjct: 158 VDLSYNYIQTITVNDLQFLRENPQVN-------------LSLDMSLNPID------FIQD 198
Query: 77 RTILDPDLIGWIDLSFNNIK-NVDKNMFTNFPNLKILYLHKNQIEEY-------LSVFVL 128
+ L + L N N+ K N L + L + ++ S+
Sbjct: 199 QAFQGIKLH-ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257
Query: 129 RRVNSLRTLSLYGNPIEKI 147
++ L
Sbjct: 258 LCDVTIDEFRLTYTNDFSD 276
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 63.9 bits (156), Expect = 3e-12
Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 29/164 (17%)
Query: 17 LDLSFQQIQSLDKVAVQKLK--------PNVHRLGESPPMLVGRYDTRSLWLSHNKISLV 68
L LS + ++L +++ N RL L + R L LSH+ I
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365
Query: 69 -------YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE 121
L L ++LS+N ++ F P L++L L +++
Sbjct: 366 DCCNLQLRNLSHLQS-----------LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414
Query: 122 YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
+ + ++ L+ L+L + ++ E + +P L L+
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQ---LFDGLPALQHLN 455
Score = 62.7 bits (153), Expect = 8e-12
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 56 RSLWLSHNKISLV----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
+ L L+ +S + GL +L + LS N +N+ + +NFP+L
Sbjct: 281 QELDLTATHLSELPSGLVGLSTLKK-----------LVLSANKFENLCQISASNFPSLTH 329
Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
L + N L L + +LR L L + IE + + L +L+
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL-SHLQSLN 382
Score = 58.5 bits (142), Expect = 2e-10
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 17/101 (16%)
Query: 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIG-----WIDLSFNNIKNVDKNMFTNFPN 108
T L S N + TI + ++DL+ I + ++ F +
Sbjct: 34 STECLEFSFNVLP-----------TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82
Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
L L L N + ++ L +L+ L I I
Sbjct: 83 LDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDF 122
Score = 58.1 bits (141), Expect = 3e-10
Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 26/146 (17%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRL--------GESPPMLVGRYDTRSLWLSHNKISLV 68
L+ SF + ++ +L N+ L ++ +L L+ N + +
Sbjct: 38 LEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM 96
Query: 69 -----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYL 123
G +L H + I ++D N L+ LYL N I +
Sbjct: 97 AETALSGPKALKH-----------LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-I 144
Query: 124 SVFVLRRVNSLRTLSLYGNPIEKIRE 149
+ L+ L N I + +
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSK 170
Score = 57.3 bits (139), Expect = 4e-10
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
L L+ ++ + + +L ++LS + + + +F P L+ L L
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLK-----VLNLSHSLLDISSEQLFDGLPALQHLNLQ 457
Query: 116 KNQIEE--YLSVFVLRRVNSLRTLSLYGNPIEKI 147
N + L+ + L L L + I
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491
Score = 56.9 bits (138), Expect = 8e-10
Identities = 33/151 (21%), Positives = 51/151 (33%), Gaps = 38/151 (25%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
LDL+ QI + + Q HRL +L L+ N + + G
Sbjct: 62 LDLTRCQIYWIHEDTFQSQ----HRL-------------DTLVLTANPLIFMAETALSGP 104
Query: 72 DSLVH-------RTILDPDLIGW------IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQ 118
+L H + +D + + L N+I ++ LK+L N
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164
Query: 119 IEEYLSVFVLRRVNSLRTLSLY--GNPIEKI 147
I LS + + LSL GN I I
Sbjct: 165 IHY-LSKEDMSSLQQATNLSLNLNGNDIAGI 194
Score = 54.6 bits (132), Expect = 5e-09
Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 22/131 (16%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
L+LS + + L P L + L L N +
Sbjct: 430 LNLSHSLLDISSEQLFDGL-----------PAL------QHLNLQGNHFP---KGNIQKT 469
Query: 77 RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRT 136
++ + + LSF ++ ++D++ FT+ + + L N++ S+ L + +
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL-TSSSIEALSHLKGI-Y 527
Query: 137 LSLYGNPIEKI 147
L+L N I I
Sbjct: 528 LNLASNHISII 538
Score = 53.1 bits (128), Expect = 1e-08
Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 32/134 (23%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
L+L + L+ + RL L LS +S + L
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQ-TLGRL-------------EILVLSFCDLSSIDQHAFTSL 499
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
+ H +DLS N + + ++ + L L N I + +L +
Sbjct: 500 KMMNH-----------VDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS-IILPSLLPIL 546
Query: 132 NSLRTLSLYGNPIE 145
+ RT++L NP++
Sbjct: 547 SQQRTINLRQNPLD 560
Score = 47.7 bits (114), Expect = 7e-07
Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 19/142 (13%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRL--------GESPPMLVGRYDTRSLWLSHNKISLV 68
L I S+D + + + L P + L +N I +
Sbjct: 110 LFFIQTGISSIDFIPLHNQ-KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168
Query: 69 YG--LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI-EEYLSV 125
+ SL T L ++L+ N+I ++ F + + L Q
Sbjct: 169 SKEDMSSLQQATNLS------LNLNGNDIAGIEPGAF-DSAVFQSLNFGGTQNLLVIFKG 221
Query: 126 FVLRRVNSLRTLSLYGNPIEKI 147
+ SL + E I
Sbjct: 222 LKNSTIQSLWLGTFEDMDDEDI 243
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 63.6 bits (155), Expect = 3e-12
Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 33/138 (23%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
LDLS +IQ+++ A Q L L +L L+ N I + GL
Sbjct: 57 LDLSRCEIQTIEDGAYQSL----SHL-------------STLILTGNPIQSLALGAFSGL 99
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
SL + N+ +++ + LK L + N I+ + +
Sbjct: 100 SSLQK-----------LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 132 NSLRTLSLYGNPIEKIRE 149
+L L L N I+ I
Sbjct: 149 TNLEHLDLSSNKIQSIYC 166
Score = 63.2 bits (154), Expect = 5e-12
Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 23/128 (17%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
LD+S + L L L ++ N + D
Sbjct: 426 LDISHTHTRVAFNGIFNGL----SSL-------------EVLKMAGNSFQENFLPDIFTE 468
Query: 77 RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRT 136
L ++DLS ++ + F + +L++L + NQ+ + + + R+ SL+
Sbjct: 469 LRNLT-----FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-KSVPDGIFDRLTSLQK 522
Query: 137 LSLYGNPI 144
+ L+ NP
Sbjct: 523 IWLHTNPW 530
Score = 62.8 bits (153), Expect = 7e-12
Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILD--PDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
L H+ + + ++ +LI ++D+S + + +F +L++L
Sbjct: 399 EHLDFQHSNLK------QMSEFSVFLSLRNLI-YLDISHTHTRVAFNGIFNGLSSLEVLK 451
Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ N +E + + +L L L +E++
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Score = 59.7 bits (145), Expect = 8e-11
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 54 DTRSLWLSHNKISLVY--GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
T++L LS N + + S +LD LS I+ ++ + + +L
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLD--------LSRCEIQTIEDGAYQSLSHLST 80
Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
L L N I+ L++ ++SL+ L + +
Sbjct: 81 LILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASL 115
Score = 57.0 bits (138), Expect = 7e-10
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 56 RSLWLSHNKISLV-----YGLDSLVHRTILDPDLIGWIDLSFNNIK-NVDKNMFTNFPNL 109
L +SH + GL SL + ++ N+ + N ++FT NL
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEV-----------LKMAGNSFQENFLPDIFTELRNL 472
Query: 110 KILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
L L + Q+E LS ++SL+ L++ N ++ +
Sbjct: 473 TFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSV 509
Score = 48.2 bits (115), Expect = 5e-07
Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 28/132 (21%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
L + SL+ + LK L + L ++HN I + +
Sbjct: 105 LVAVETNLASLENFPIGHLK----TL-------------KELNVAHNLIQSFKLPEYFSN 147
Query: 77 RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI----LYLHKNQIEEYLSVFVLRRVN 132
T L+ +DLS N I+++ + + L L N + ++ + +
Sbjct: 148 LTNLE-----HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIR 201
Query: 133 SLRTLSLYGNPI 144
L L+L N
Sbjct: 202 -LHKLTLRNNFD 212
Score = 41.2 bits (97), Expect = 1e-04
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE-YLSVFVLRRVNSLRTLSLYGNPIEK 146
+ + N N + P+L+ L L +N + SL+ L L N +
Sbjct: 330 LTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387
Query: 147 I 147
+
Sbjct: 388 M 388
Score = 38.2 bits (89), Expect = 0.001
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 23/157 (14%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
LDLS +IQS+ ++ L H++ SL LS N ++ +
Sbjct: 154 LDLSSNKIQSIYCTDLRVL----HQM---------PLLNLSLDLSLNPMNFI-------Q 193
Query: 77 RTILDPDLIGWIDLSFNNIK-NVDKNMFTNFPNLKILYLHKNQIEEY--LSVFVLRRVNS 133
+ + L N NV K L++ L + L F +
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253
Query: 134 LRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFIL 170
L L++ + + Y + + L + S ++
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290
Score = 36.6 bits (85), Expect = 0.004
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
N + N+ + K L L N + L + L+ L L I+ I
Sbjct: 13 QCMELNFYKIPDNLPFS---TKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTI 67
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 63.7 bits (155), Expect = 4e-12
Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 26/146 (17%)
Query: 17 LDLSFQQIQSLDKVAVQKL-KPNVHRLGES--------PPMLVGRYDTRSLWLSHNKISL 67
F I+ D+ L + +V L S + D + L L++NKI+
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304
Query: 68 V-----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEY 122
+ YGLD+L ++LS+N + + + F P + + L KN I
Sbjct: 305 IADEAFYGLDNLQV-----------LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-AI 352
Query: 123 LSVFVLRRVNSLRTLSLYGNPIEKIR 148
+ + + L+TL L N + I
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNALTTIH 378
Score = 58.7 bits (142), Expect = 2e-10
Identities = 20/133 (15%), Positives = 46/133 (34%), Gaps = 14/133 (10%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYG--LDSL 74
LD+S L+ + + I L
Sbjct: 209 LDVSGNGWTVDITGNFSNAISKS-----QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
++ +DLS + +++ +F +LK+L L N+I + ++ +++L
Sbjct: 264 ARSSVR------HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNL 316
Query: 135 RTLSLYGNPIEKI 147
+ L+L N + ++
Sbjct: 317 QVLNLSYNLLGEL 329
Score = 57.9 bits (140), Expect = 4e-10
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
LSFN I+ V + F L++L L + R + +LR L L + I +
Sbjct: 30 LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88
Score = 56.7 bits (137), Expect = 8e-10
Identities = 32/148 (21%), Positives = 50/148 (33%), Gaps = 26/148 (17%)
Query: 17 LDLSFQQIQSLDKVAVQKLK--------PNVHRLGESPPMLVGRYDTRSLWLSHNKISLV 68
L LSF I+++ + L+ L + R L L +KI +
Sbjct: 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88
Query: 69 -----YGLDSLVHRTILDPDLIGWIDLSFNNIKN--VDKNMFTNFPNLKILYLHKNQIEE 121
GL L + L F + + + F N L L L KNQI
Sbjct: 89 HPDAFQGLFHLFE-----------LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137
Query: 122 YLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
++NSL+++ N I + E
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCE 165
Score = 56.7 bits (137), Expect = 9e-10
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 16/101 (15%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIG------WIDLSFNNIKNVDKNMFTNFPNL 109
L+L N + L + T L D+ + L+ N + ++ +F++ L
Sbjct: 454 EQLFLGENMLQLAW-------ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506
Query: 110 KILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY 150
+ L L+ N++ LS L +L L + N +
Sbjct: 507 RGLSLNSNRL-TVLSHNDLP--ANLEILDISRNQLLAPNPD 544
Score = 45.6 bits (108), Expect = 5e-06
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNF--PNLKILY 113
L LS N+I +Y S L ID S N I V ++ L
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLK-----SIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSL 139
L N + +SV + +N R + L
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVL 206
Score = 44.8 bits (106), Expect = 8e-06
Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 24/139 (17%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRL--------GESPPMLVGRYDTRSLWLSHNKISLV 68
L+LS+ + L L P V + ++L L N ++ +
Sbjct: 319 LNLSYNLLGELYSSNFYGL-PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377
Query: 69 YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL 128
+ + S+ I LS N + + K +++L +N++E ++ L
Sbjct: 378 HFIPSIPD-----------IFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFL 422
Query: 129 RRVNSLRTLSLYGNPIEKI 147
RV L+ L L N
Sbjct: 423 LRVPHLQILILNQNRFSSC 441
Score = 42.5 bits (100), Expect = 6e-05
Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 28/147 (19%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
+D S QI + + ++ L+ L+ N + +D
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSF---------------FSLAANSLYSRVSVDWGKC 197
Query: 77 RTILDPDLIGWIDLSFNNIKNVDKNMFTNF------------PNLKILYLHKNQIEE-YL 123
++ +D+S N F+N ++ + I++
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257
Query: 124 SVFVLRRVNSLRTLSLYGNPIEKIREY 150
+ F +S+R L L + +
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSR 284
Score = 34.0 bits (78), Expect = 0.027
Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 28/129 (21%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
L L+ + SL L L R L L+ N+++++ D +
Sbjct: 485 LYLNHNYLNSLPPGVFSHL----TAL-------------RGLSLNSNRLTVLSHNDLPAN 527
Query: 77 RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRT 136
ILD +S N + + ++ F +L +L + N+ + +
Sbjct: 528 LEILD--------ISRNQLLAPNPDV---FVSLSVLDITHNKFICECELSTFINWLNHTN 576
Query: 137 LSLYGNPIE 145
+++ G P +
Sbjct: 577 VTIAGPPAD 585
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 62.7 bits (152), Expect = 4e-12
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 87 WIDLSFNNIKNVD--KNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
++LS N + +D ++ PNLKIL L N+++ + ++ + L L L GN +
Sbjct: 174 SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELWLDGNSL 232
Query: 145 EKI----REYRAVVSTMIPQLVTLDSVFILPS 172
Y + + P+L+ LD + P
Sbjct: 233 CDTFRDQSTYISAIRERFPKLLRLDGHELPPP 264
Score = 26.1 bits (57), Expect = 9.8
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
L+LS ++ LD ++ + + P L + L LS N++ LD +
Sbjct: 175 LNLSNNRLYRLDDMSS---------IVQKAPNL------KILNLSGNELKSERELDKIKG 219
Query: 77 RTILDPDLIG-WIDLSFNNIKNVDKNMFTNFPNLKIL 112
+ + L G + +F + + FP L L
Sbjct: 220 LKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL 256
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 63.2 bits (153), Expect = 5e-12
Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 13/137 (9%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
SL+L +NKI+ + L L L L N I ++ L+ LYL
Sbjct: 134 ESLYLGNNKITDITVLSRLTKLDTLS--------LEDNQISDIVP--LAGLTKLQNLYLS 183
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ 175
KN I + + L + +L L L+ + + D + P
Sbjct: 184 KNHISDLRA---LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240
Query: 176 ETNALNAEIRSYLLPKY 192
+ + LP++
Sbjct: 241 DDGDYEKPNVKWHLPEF 257
Score = 57.4 bits (138), Expect = 5e-10
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
L+L NKI + L L L L N I +++ + P L+ LYL
Sbjct: 90 GWLFLDENKIKDLSSLKDLKKLKSLS--------LEHNGISDING--LVHLPQLESLYLG 139
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
N+I + VL R+ L TLSL N I I
Sbjct: 140 NNKIT---DITVLSRLTKLDTLSLEDNQISDI 168
Score = 56.3 bits (135), Expect = 1e-09
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
+ +++ I V G+ L + T L L+ N + ++ TN NL L+L
Sbjct: 46 DQIIANNSDIKSVQGIQYLPNVTKLF--------LNGNKLTDIK--PLTNLKNLGWLFLD 95
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+N+I+ + L+ + L++LSL N I I
Sbjct: 96 ENKIK---DLSSLKDLKKLKSLSLEHNGISDI 124
Score = 41.6 bits (97), Expect = 9e-05
Identities = 11/92 (11%), Positives = 30/92 (32%), Gaps = 13/92 (14%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
I ++ D+ + L ++ + ++ + +
Sbjct: 2 GETITVSTPIKQIFPDDAFAETIKDN--------LKKKSVTDAVT--QNELNSIDQIIAN 51
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ I+ SV ++ + ++ L L GN + I
Sbjct: 52 NSDIK---SVQGIQYLPNVTKLFLNGNKLTDI 80
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 62.8 bits (153), Expect = 6e-12
Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 34/138 (24%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
+ ++ L + + ++ L L+ +I +
Sbjct: 50 VTFKNSTMRKLPAALLDSFR----QV-------------ELLNLNDLQIEEIDTYAFAYA 92
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
++ + + FN I+ + ++F N P L +L L +N + L +
Sbjct: 93 HTIQK-----------LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNT 140
Query: 132 NSLRTLSLYGNPIEKIRE 149
L TLS+ N +E+I +
Sbjct: 141 PKLTTLSMSNNNLERIED 158
Score = 59.3 bits (144), Expect = 9e-11
Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 30/131 (22%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
LD S I + +L L L HN ++ L +
Sbjct: 210 LDASHNSINVVRGPVNVEL--------------------TILKLQHNNLTDTAWLLNY-- 247
Query: 77 RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRT 136
P L+ +DLS+N ++ + + F L+ LY+ N++ + + +L+
Sbjct: 248 -----PGLV-EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG--QPIPTLKV 299
Query: 137 LSLYGNPIEKI 147
L L N + +
Sbjct: 300 LDLSHNHLLHV 310
Score = 58.1 bits (141), Expect = 2e-10
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 17/97 (17%)
Query: 56 RSLWLSHNKISLV-----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLK 110
+ + ++ + + + ++L+ I+ +D F ++
Sbjct: 48 KIVTFKNSTMRKLPAALLDSFRQVEL-----------LNLNDLQIEEIDTYAFAYAHTIQ 96
Query: 111 ILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
LY+ N I L V + V L L L N + +
Sbjct: 97 KLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSL 132
Score = 56.2 bits (136), Expect = 1e-09
Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 37/136 (27%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
L + F I+ L Q + L L L N +S + +
Sbjct: 98 LYMGFNAIRYLPPHVFQNVP----LL-------------TVLVLERNDLSSLPRGIFHNT 140
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
L + +S NN++ ++ + F +L+ L L N++ + + ++
Sbjct: 141 PKLTT-----------LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIP-- 186
Query: 132 NSLRTLSLYGNPIEKI 147
SL ++ N + +
Sbjct: 187 -SLFHANVSYNLLSTL 201
Score = 54.7 bits (132), Expect = 3e-09
Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 39/134 (29%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV----YGLD 72
+DLS+ +++ + K++ RL L++S+N++ + +
Sbjct: 253 VDLSYNELEKIMYHPFVKMQ----RL-------------ERLYISNNRLVALNLYGQPIP 295
Query: 73 SLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE-YLSVFVLRRV 131
+L +DLS N++ +V++N F L+ LYL N I LS
Sbjct: 296 TLK-----------VLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTH----- 338
Query: 132 NSLRTLSLYGNPIE 145
++L+ L+L N +
Sbjct: 339 HTLKNLTLSHNDWD 352
Score = 51.2 bits (123), Expect = 5e-08
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 17/94 (18%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
+S+N +S + ++ +D S N+I V + L IL L
Sbjct: 189 FHANVSYNLLSTLAIPIAVEE-----------LDASHNSINVVRGPVNV---ELTILKLQ 234
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
N + + L L + L N +EKI
Sbjct: 235 HNNLTD---TAWLLNYPGLVEVDLSYNELEKIMY 265
Score = 37.7 bits (88), Expect = 0.001
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 90 LSFNNIKNVDKNMFTNF-----PNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
+I ++++ F N KI+ + + + L +L + L+L I
Sbjct: 23 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQI 81
Query: 145 EKIRE 149
E+I
Sbjct: 82 EEIDT 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 61.9 bits (151), Expect = 6e-12
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 54 DTRSLWLSHNKI-SLVYG-LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
T++L LS N + L S +LD LS I+ ++ + + +L
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLD--------LSRCEIQTIEDGAYQSLSHLST 80
Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
L L N I+ L++ ++SL+ L + +
Sbjct: 81 LILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASL 115
Score = 57.7 bits (140), Expect = 2e-10
Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 27/133 (20%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL-DSL 74
LDLS +IQ+++ A Q L L +L L+ N I SL G L
Sbjct: 57 LDLSRCEIQTIEDGAYQSLS----HL-------------STLILTGNPIQSLALGAFSGL 99
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
L N+ +++ + LK L + N I+ + + +L
Sbjct: 100 SSLQKLV--------AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 135 RTLSLYGNPIEKI 147
L L N I+ I
Sbjct: 152 EHLDLSSNKIQSI 164
Score = 57.3 bits (139), Expect = 3e-10
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 18/138 (13%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLG---------ESPPMLVGRYDTRSLWLSHNKISL 67
L + SL+ + L + L + P + L LS NKI
Sbjct: 105 LVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Query: 68 VYG--LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSV 125
+Y L L +L+ L DLS N + + F LK L L NQ++ +
Sbjct: 164 IYCTDLRVLHQMPLLNLSL----DLSLNPMNFIQPGAFKE-IRLKELALDTNQLKS-VPD 217
Query: 126 FVLRRVNSLRTLSLYGNP 143
+ R+ SL+ + L+ NP
Sbjct: 218 GIFDRLTSLQKIWLHTNP 235
Score = 56.5 bits (137), Expect = 6e-10
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 28/133 (21%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL-DSL 74
LDLSF ++ L + P L + L LS +I ++ G SL
Sbjct: 33 LDLSFNPLRHLGSYSFFSF-----------PEL------QVLDLSRCEIQTIEDGAYQSL 75
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
H + L L+ N I+++ F+ +L+ L + + L F + + +L
Sbjct: 76 SHLSTL--------ILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTL 126
Query: 135 RTLSLYGNPIEKI 147
+ L++ N I+
Sbjct: 127 KELNVAHNLIQSF 139
Score = 33.8 bits (78), Expect = 0.025
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 104 TNFP-NLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
N P + K L L N + L + L+ L L I+ I
Sbjct: 24 DNLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTI 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 61.2 bits (149), Expect = 8e-12
Identities = 16/118 (13%), Positives = 43/118 (36%), Gaps = 19/118 (16%)
Query: 54 DTRSLWLSHNKISLV-----YGLDSLVHRTILDPDLIGWIDLSFNN-IKNVDKNMFTNFP 107
T++L L + + L ++ I +S + ++ ++ + F N
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISR-----------IYVSIDVTLQQLESHSFYNLS 80
Query: 108 NLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
+ + + + Y+ L+ + L+ L ++ ++ + V ST L+
Sbjct: 81 KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST--DIFFILE 136
Score = 46.5 bits (111), Expect = 1e-06
Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 23/114 (20%)
Query: 56 RSLWLSHNKI------SLVYGLDSLVHRTILD---------------PDLIGWIDLSFNN 94
+ L + + + + VY D I D + + L N
Sbjct: 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167
Query: 95 IKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS-LRTLSLYGNPIEKI 147
+V F L +YL+KN+ + V S L + + +
Sbjct: 168 FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220
Score = 41.5 bits (98), Expect = 7e-05
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 10/88 (11%)
Query: 55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN-IKNVDKNMFTNFPN-LKIL 112
T +L L +N + V + + + L+ N + +DK+ F + +L
Sbjct: 158 TLTLKLYNNGF-------TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210
Query: 113 YLHKNQIEEYLSVFVLRRVNSLRTLSLY 140
+ + + L L + L + +
Sbjct: 211 DVSQTSVTA-LPSKGLEHLKELIARNTW 237
Score = 30.7 bits (70), Expect = 0.28
Identities = 3/42 (7%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 107 PNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGN-PIEKI 147
P+ + L L + + + + ++ + + + ++++
Sbjct: 31 PSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQL 71
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 62.0 bits (151), Expect = 1e-11
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 20/102 (19%)
Query: 54 DTRSLWLSHNKISLVY-----GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPN 108
DT L L +N IS + GL L + L N I + + F+
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQHLY-----------ALVLVNNKISKIHEKAFSPLRK 103
Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY 150
L+ LY+ KN + E + + SL L ++ N I K+ +
Sbjct: 104 LQKLYISKNHLVE-IPPNLPS---SLVELRIHDNRIRKVPKG 141
Score = 58.5 bits (142), Expect = 1e-10
Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 38/138 (27%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
L +S ++ + K + L L L HNKI +
Sbjct: 177 LRISEAKLTGIPKDLPETL--------------------NELHLDHNKIQAIELEDLLRY 216
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
L + L N I+ ++ + P L+ L+L N++ + +
Sbjct: 217 SKLYR-----------LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL--PDL 263
Query: 132 NSLRTLSLYGNPIEKIRE 149
L+ + L+ N I K+
Sbjct: 264 KLLQVVYLHTNNITKVGV 281
Score = 57.3 bits (139), Expect = 4e-10
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 16/95 (16%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDL---IGWIDLSFNNIKNVDKNMFTNFPNLKIL 112
L +S K+ T + DL + + L N I+ ++ + L L
Sbjct: 175 NYLRISEAKL------------TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRL 222
Query: 113 YLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
L NQI + L + +LR L L N + ++
Sbjct: 223 GLGHNQIRM-IENGSLSFLPTLRELHLDNNKLSRV 256
Score = 56.2 bits (136), Expect = 8e-10
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 22/100 (22%)
Query: 56 RSLWLSHNKISLV-----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLK 110
L L HN+I ++ L +L + L N + V + L+
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRE-----------LHLDNNKLSRVPAG-LPDLKLLQ 267
Query: 111 ILYLHKNQIEE-----YLSVFVLRRVNSLRTLSLYGNPIE 145
++YLH N I + + V + +SL+ NP+
Sbjct: 268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307
Score = 53.9 bits (130), Expect = 5e-09
Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 53/158 (33%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
L L +I + + A L +L + L++S N +
Sbjct: 83 LVLVNNKISKIHEKAFSPL----RKL-------------QKLYISKNHL----------- 114
Query: 77 RTILDPDL---IGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE------------ 121
+ P+L + + + N I+ V K +F+ N+ + + N +E
Sbjct: 115 -VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173
Query: 122 ----YLSVFVLRRVN-----SLRTLSLYGNPIEKIREY 150
+S L + +L L L N I+ I
Sbjct: 174 LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELE 211
Score = 43.1 bits (102), Expect = 3e-05
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 10/111 (9%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVH-------RLGESPPMLVGRYDTRSLWLSHNKISLVY 69
L L QI+ ++ ++ L P + +L P L + ++L N I+ V
Sbjct: 222 LGLGHNQIRMIENGSLSFL-PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVG 280
Query: 70 GLDSLVHRTILDPDLIGWIDLSFNNIK--NVDKNMFTNFPNLKILYLHKNQ 118
D + I L N + V F + + +
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
Score = 36.5 bits (85), Expect = 0.003
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ S +K V K + P+ +L L N I E L + + L L L N I KI
Sbjct: 38 VQCSDLGLKAVPKEIS---PDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKI 93
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 61.2 bits (149), Expect = 3e-11
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 34/136 (25%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
LD+ F I L+ QKL L + L L HN++S +
Sbjct: 54 LDVGFNTISKLEPELCQKL----PML-------------KVLNLQHNELSQLSDKTFAFC 96
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
+L + L N+I+ + N F NL L L N + + ++
Sbjct: 97 TNLTE-----------LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQL 144
Query: 132 NSLRTLSLYGNPIEKI 147
+L+ L L N I+ +
Sbjct: 145 ENLQELLLSNNKIQAL 160
Score = 60.8 bits (148), Expect = 3e-11
Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 11/139 (7%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRL--------GESPPMLVGRYDTRSLWLSHNKISLV 68
+S + +D + Q L + L G M G + + L LS++ SL
Sbjct: 310 QSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368
Query: 69 YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL 128
L + ++ L ++L+ N I ++ + F+ +L++L L N+I + L+
Sbjct: 369 -TLTNETFVSLAHSPLH-ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426
Query: 129 RRVNSLRTLSLYGNPIEKI 147
R + ++ + L N ++
Sbjct: 427 RGLENIFEIYLSYNKYLQL 445
Score = 60.0 bits (146), Expect = 6e-11
Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 22/151 (14%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV--YGLDSL 74
LDLS I +++ ++ L L L L HN ++ + +
Sbjct: 485 LDLSNNNIANINDDMLEGL-----------EKL------EILDLQHNNLARLWKHANPGG 527
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
+ + ++L N + +F + LKI+ L N + L V SL
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSL 586
Query: 135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
++L+L N I + + V L LD
Sbjct: 587 KSLNLQKNLITSVEK--KVFGPAFRNLTELD 615
Score = 59.6 bits (145), Expect = 8e-11
Identities = 30/135 (22%), Positives = 42/135 (31%), Gaps = 27/135 (20%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
LDL + L K A G L G L L N
Sbjct: 509 LDLQHNNLARLWKHANP---------GGPIYFLKGLSHLHILNLESNGF----------- 548
Query: 77 RTILDPDLIG------WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR 130
+ ++ IDL NN+ + ++F N +LK L L KN I
Sbjct: 549 -DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607
Query: 131 VNSLRTLSLYGNPIE 145
+L L + NP +
Sbjct: 608 FRNLTELDMRFNPFD 622
Score = 58.9 bits (143), Expect = 1e-10
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 54 DTRSLWLSHNKISLVY-----GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPN 108
+ L L+HN++ + L +D+ FN I ++ + P
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTS-----------LDVGFNTISKLEPELCQKLPM 74
Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
LK+L L N++ + LS +L L L N I+KI+
Sbjct: 75 LKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKN 114
Score = 57.7 bits (140), Expect = 4e-10
Identities = 35/160 (21%), Positives = 53/160 (33%), Gaps = 18/160 (11%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRL--------GESPPMLVGRYDTRSLWLSHNKIS-L 67
L L IQ + K N+ L V + + L LS+NKI L
Sbjct: 102 LHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160
Query: 68 VYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYL--SV 125
+ + L ++LS N IK F L L+L+ Q+ L +
Sbjct: 161 KSEELDIFANSSLK-----KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215
Query: 126 FVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
+ S+R LSL + + + L LD
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSN-TTFLGLKWTNLTMLD 254
Score = 57.3 bits (139), Expect = 5e-10
Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 23/132 (17%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
L+L+ +I ++ A L L L L N+I L
Sbjct: 386 LNLTKNKISKIESDAFSWL----GHL-------------EVLDLGLNEIG-----QELTG 423
Query: 77 RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE-YLSVFVLRRVNSLR 135
+ + I I LS+N + +N F P+L+ L L + ++ S + + +L
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483
Query: 136 TLSLYGNPIEKI 147
L L N I I
Sbjct: 484 ILDLSNNNIANI 495
Score = 56.9 bits (138), Expect = 7e-10
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 14/117 (11%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
+ L L + V S +L +DLS NNI N++ +M L+IL L
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPL---RNLT-ILDLSNNNIANINDDMLEGLEKLEILDLQ 512
Query: 116 KNQIEE-------YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
N + ++ L+ ++ L L+L N ++I V + +L +D
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE---VFKDLFELKIID 566
Score = 55.8 bits (135), Expect = 2e-09
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 17/137 (12%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRL--------GESPPMLVGRYDT---RSLWLSHNKI 65
L+LS QI+ + + L L R+L LS++++
Sbjct: 176 LELSSNQIKEFSPGCFHAI-GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234
Query: 66 SLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSV 125
S + + +L +DLS+NN+ V + F P L+ +L N I+ L
Sbjct: 235 S---TTSNTTFLGLKWTNLT-MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFS 289
Query: 126 FVLRRVNSLRTLSLYGN 142
L + ++R L+L +
Sbjct: 290 HSLHGLFNVRYLNLKRS 306
Score = 53.9 bits (130), Expect = 9e-09
Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 41/145 (28%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
L LS Q+ + LK L L LS+N +
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWT--NL-------------TMLDLSYNNL----------- 260
Query: 77 RTILDPDLIGW------IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR 130
++ D W L +NNI+++ + N++ L L ++ ++ +S+ L +
Sbjct: 261 -NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319
Query: 131 VN--------SLRTLSLYGNPIEKI 147
++ L L++ N I I
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGI 344
Score = 27.3 bits (61), Expect = 4.8
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 25/91 (27%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
L+L I S++K N+ L + N +S+
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNL----------------TELDMRFNPFD--CTCESI-- 628
Query: 77 RTILDPDLIGWIDLSFNNIKNVDKNMFTNFP 107
+ WI+ + NI + + N P
Sbjct: 629 -----AWFVNWINETHTNIPELSSHYLCNTP 654
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 61.1 bits (148), Expect = 3e-11
Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 17/99 (17%)
Query: 56 RSLWLSHNKISLV-----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLK 110
L L+ +I + ++ + + FN I+ + ++F N P L
Sbjct: 78 ELLNLNDLQIEEIDTYAFAYAHTIQK-----------LYMGFNAIRYLPPHVFQNVPLLT 126
Query: 111 ILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
+L L +N + L + L TLS+ N +E+I +
Sbjct: 127 VLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIED 164
Score = 57.2 bits (138), Expect = 6e-10
Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 30/131 (22%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
LD S I + +L L L HN ++ L +
Sbjct: 216 LDASHNSINVVRGPVNVEL--------------------TILKLQHNNLTDTAWLLNYPG 255
Query: 77 RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRT 136
+ +DLS+N ++ + + F L+ LY+ N++ + + +L+
Sbjct: 256 --------LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG--QPIPTLKV 305
Query: 137 LSLYGNPIEKI 147
L L N + +
Sbjct: 306 LDLSHNHLLHV 316
Score = 56.5 bits (136), Expect = 9e-10
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 11/96 (11%)
Query: 56 RSLWLSHNKISLV--YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
+ + ++ + + LDS +L +L+ I+ +D F ++ LY
Sbjct: 54 KIVTFKNSTMRKLPAALLDSFRQVELL--------NLNDLQIEEIDTYAFAYAHTIQKLY 105
Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
+ N I L V + V L L L N + +
Sbjct: 106 MGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPR 140
Score = 52.2 bits (125), Expect = 2e-08
Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 37/136 (27%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
L + F I+ L Q + L L L N +S + +
Sbjct: 104 LYMGFNAIRYLPPHVFQNVP----LL-------------TVLVLERNDLSSLPRGIFHNT 146
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
L + +S NN++ ++ + F +L+ L L N++ + + ++
Sbjct: 147 PKLTT-----------LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIP-- 192
Query: 132 NSLRTLSLYGNPIEKI 147
SL ++ N + +
Sbjct: 193 -SLFHANVSYNLLSTL 207
Score = 51.1 bits (122), Expect = 6e-08
Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 37/133 (27%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV----YGLD 72
+DLS+ +++ + K++ RL L++S+N++ + +
Sbjct: 259 VDLSYNELEKIMYHPFVKMQ----RL-------------ERLYISNNRLVALNLYGQPIP 301
Query: 73 SLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVN 132
+L +DLS N++ +V++N F L+ LYL N I L +
Sbjct: 302 TLK-----------VLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVT----LKLSTHH 345
Query: 133 SLRTLSLYGNPIE 145
+L+ L+L N +
Sbjct: 346 TLKNLTLSHNDWD 358
Score = 49.5 bits (118), Expect = 2e-07
Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 33/143 (23%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV--YGLDSL 74
L +S ++ ++ Q L ++L LS N+++ V + SL
Sbjct: 152 LSMSNNNLERIEDDTFQATT----SL-------------QNLQLSSNRLTHVDLSLIPSL 194
Query: 75 VH--------RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVF 126
H T+ P + +D S N+I V + L IL L N + + +
Sbjct: 195 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD-TAWL 250
Query: 127 VLRRVNSLRTLSLYGNPIEKIRE 149
L + L N +EKI
Sbjct: 251 --LNYPGLVEVDLSYNELEKIMY 271
Score = 37.6 bits (87), Expect = 0.002
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 90 LSFNNIKNVDKNMFTNF-----PNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
+I ++++ F N KI+ + + + L +L + L+L I
Sbjct: 29 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQI 87
Query: 145 EKIRE 149
E+I
Sbjct: 88 EEIDT 92
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 58.5 bits (142), Expect = 6e-11
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 54 DTRSLWLSHNKISLVYG--LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
+ L N I ++ IDLS N I + + F +L
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLR--------RIDLSNNQISELAPDAFQGLRSLNS 84
Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
L L+ N+I E L + + SL+ L L N I +R
Sbjct: 85 LVLYGNKITE-LPKSLFEGLFSLQLLLLNANKINCLRV 121
Score = 58.5 bits (142), Expect = 6e-11
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 28/129 (21%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL-DSL 74
+DLS QI L A Q L+ L SL L NKI L L + L
Sbjct: 61 IDLSNNQISELAPDAFQGLR----SL-------------NSLVLYGNKITELPKSLFEGL 103
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
+L L+ N I + + F + NL +L L+ N+++ ++ + ++
Sbjct: 104 FSLQLLL--------LNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAI 154
Query: 135 RTLSLYGNP 143
+T+ L NP
Sbjct: 155 QTMHLAQNP 163
Score = 58.5 bits (142), Expect = 7e-11
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 28/133 (21%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL-DSL 74
+ L I+ + A K +L R + LS+N+I L L
Sbjct: 37 IRLEQNTIKVIPPGAFSPYK----KL-------------RRIDLSNNQISELAPDAFQGL 79
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
L L N I + K++F +L++L L+ N+I L V + +++L
Sbjct: 80 RSLNSLV--------LYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNL 130
Query: 135 RTLSLYGNPIEKI 147
LSLY N ++ I
Sbjct: 131 NLLSLYDNKLQTI 143
Score = 33.1 bits (76), Expect = 0.043
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 104 TNFP-NLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
TN P + + L +N I+ + LR + L N I ++
Sbjct: 28 TNLPETITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISEL 71
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 58.1 bits (141), Expect = 6e-11
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 54 DTRSLWLSHNKISLVYG-LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKIL 112
D L+L N+ +LV L + H T IDLS N I + F+N L L
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLT--------LIDLSNNRISTLSNQSFSNMTQLLTL 83
Query: 113 YLHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
L N++ + + SLR LSL+GN
Sbjct: 84 ILSYNRLRC-IPPRTFDGLKSLRLLSLHGN 112
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 59.7 bits (145), Expect = 7e-11
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 54 DTRSLWLSHNKISLVY--GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
+SL LS NKI+ + L + + +L L + I ++ + F + +L+
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVL--------ILKSSRINTIEGDAFYSLGSLEH 78
Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
L L N + LS ++SL+ L+L GNP + + ++ + L TL
Sbjct: 79 LDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTL-GVTSLFPNL-TNLQTLR 129
Score = 56.3 bits (136), Expect = 1e-09
Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 35/154 (22%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
LDLSF +I + ++ L + L L ++I+ + Y L
Sbjct: 31 LDLSFNKITYIGHGDLRAC----ANL-------------QVLILKSSRINTIEGDAFYSL 73
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
SL H +DLS N++ ++ + F +LK L L N + + +
Sbjct: 74 GSLEH-----------LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122
Query: 132 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
+L+TL + E R + + L L+
Sbjct: 123 TNLQTLRIGNVE--TFSEIRRIDFAGLTSLNELE 154
Score = 55.5 bits (134), Expect = 2e-09
Identities = 32/152 (21%), Positives = 56/152 (36%), Gaps = 32/152 (21%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVH---------RLGESPPMLVGRYDTRSLWLSHNKISL 67
L LS ++S+ K + L + P R L LS I +
Sbjct: 366 LVLSQNHLRSMQKTG-EILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV 424
Query: 68 V--YGLDSLVHRTILD-------------PDLIGWIDLSFNNIKNVDKNMFTNFPNLKIL 112
V +L +LD P L + +S N +K + FP L ++
Sbjct: 425 VKTCIPQTL---EVLDVSNNNLDSFSLFLPRLQ-ELYISRNKLKTLPDASL--FPVLLVM 478
Query: 113 YLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
+ +NQ+ + + + R+ SL+ + L+ NP
Sbjct: 479 KISRNQL-KSVPDGIFDRLTSLQKIWLHTNPW 509
Score = 53.6 bits (129), Expect = 8e-09
Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 24/133 (18%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
+ + ++ + Q LK L L LS N + Y +S
Sbjct: 315 ITVENSKVFLVPCSFSQHLK----SL-------------EFLDLSENLMVEEYLKNSACK 357
Query: 77 RTILDPDLIGWIDLSFNNIKNVDK--NMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
P L + LS N+++++ K + NL L + +N + +
Sbjct: 358 GAW--PSLQ-TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC--QWPEKM 412
Query: 135 RTLSLYGNPIEKI 147
R L+L I +
Sbjct: 413 RFLNLSSTGIRVV 425
Score = 52.4 bits (126), Expect = 2e-08
Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 19/117 (16%)
Query: 56 RSLWLSHNKISLVY-----GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLK 110
R L + + L+ + I + + + V + + +L+
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKR-----------ITVENSKVFLVPCSFSQHLKSLE 337
Query: 111 ILYLHKNQIEE--YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
L L +N + E + SL+TL L N + +++ ++ T+ L +LD
Sbjct: 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLD 393
Score = 51.3 bits (123), Expect = 5e-08
Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 38/154 (24%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKIS------LVYG 70
LDLS + SL L L + L L N L
Sbjct: 79 LDLSDNHLSSLSSSWFGPLS----SL-------------KYLNLMGNPYQTLGVTSLFPN 121
Query: 71 LDSLVH---------RTILDPDLIG-----WIDLSFNNIKNVDKNMFTNFPNLKILYLHK 116
L +L I D G +++ +++N + ++ L LH
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181
Query: 117 NQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY 150
++ +L ++S+R L L + + +
Sbjct: 182 SES-AFLLEIFADILSSVRYLELRDTNLARFQFS 214
Score = 41.6 bits (98), Expect = 8e-05
Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 5/109 (4%)
Query: 58 LWLSHNKI-SLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHK 116
S N++ L+ + L D L G D + + V + ++ L++ +
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295
Query: 117 NQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
+ LS V + ++ +++ + + + S + L LD
Sbjct: 296 FYLFYDLST-VYSLLEKVKRITVENSKVFLV---PCSFSQHLKSLEFLD 340
Score = 40.5 bits (95), Expect = 2e-04
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
D + ++ + +K L L N+I + LR +L+ L L + I I
Sbjct: 11 DGRSRSFTSIPSGLT---AAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINTI 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 58.6 bits (142), Expect = 1e-10
Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 15/137 (10%)
Query: 17 LDLSFQQIQSLDK----VAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL 71
L+L ++ L + L + ++L P + L +S N++ SL G
Sbjct: 60 LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 72 -DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR 130
L L L N +K + + T P L+ L L N + E L +L
Sbjct: 120 LRGLGELQELY--------LKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNG 170
Query: 131 VNSLRTLSLYGNPIEKI 147
+ +L TL L N + I
Sbjct: 171 LENLDTLLLQENSLYTI 187
Score = 56.7 bits (137), Expect = 6e-10
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 17/138 (12%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLG------ESPPMLVGRYDTRSLWLSHNKI-SLVY 69
L LS + + + + +L + +L LSHN++ SL
Sbjct: 36 LHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 70 GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129
+L T+LD +SFN + ++ L+ LYL N+++ L +L
Sbjct: 95 LGQTLPALTVLD--------VSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLT 145
Query: 130 RVNSLRTLSLYGNPIEKI 147
L LSL N + ++
Sbjct: 146 PTPKLEKLSLANNNLTEL 163
Score = 52.0 bits (125), Expect = 2e-08
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 18/110 (16%)
Query: 54 DTRSLWLSHNKISLVY--GLDSLVHRTILDPD--------------LIGWIDLSFNNIKN 97
DT L LS N + L T L+ D ++G +DLS N +++
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91
Query: 98 VDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ + P L +L + N++ L + LR + L+ L L GN ++ +
Sbjct: 92 LP-LLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTL 139
Score = 52.0 bits (125), Expect = 2e-08
Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 44/149 (29%)
Query: 7 TSIDPEF-KIP----LDLSFQQIQSLDKVAVQKLKPNV-HRLGESPPMLVGRYDTRSLWL 60
S+ +P LD+SF ++ SL LGE L + L+L
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLP--------LGALRGLGE----L------QELYL 131
Query: 61 SHNKI-SLVYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQ 118
N++ +L GL L L+ NN+ + + NL L L +N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLS--------LANNNLTELPAGLLNGLENLDTLLLQENS 183
Query: 119 IEEYLSV----FVLRRVNSLRTLSLYGNP 143
+ ++ F + L L+GNP
Sbjct: 184 LY---TIPKGFFGS---HLLPFAFLHGNP 206
Score = 44.7 bits (106), Expect = 6e-06
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR 148
LS N + + L L L + ++ + L V + L TL L N ++ +
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVLGTLDLSHNQLQSL- 92
Query: 149 EYRAVVSTMIPQLVTLD 165
++ +P L LD
Sbjct: 93 ---PLLGQTLPALTVLD 106
Score = 37.0 bits (86), Expect = 0.003
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR 148
+ N+ + ++ + IL+L +N + S+ L L L+L + K++
Sbjct: 16 NCDKRNLTALPPDLPKD---TTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQ 71
Query: 149 EYRAVVSTMIPQLVTLD 165
V +P L TLD
Sbjct: 72 -----VDGTLPVLGTLD 83
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 58.9 bits (143), Expect = 2e-10
Identities = 19/110 (17%), Positives = 44/110 (40%), Gaps = 18/110 (16%)
Query: 56 RSLWLSHNKISLVY----GLDSLVH--------RTILDPDLIG------WIDLSFNNIKN 97
+ L LS N + + GL+ L H + + + + ++D+S + +
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 98 VDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+F +L++L + N +E + + +L L L +E++
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Score = 57.7 bits (140), Expect = 4e-10
Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 22/129 (17%)
Query: 56 RSLWLSHNKIS-----LVYGLDSLVH--------RTILDPDLIG------WIDLSFNNIK 96
L +SH + GL SL + PD+ ++DLS ++
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 97 NVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVST 156
+ F + +L++L + N L F + +NSL+ L N I ++ +
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKK--QELQH 540
Query: 157 MIPQLVTLD 165
L L+
Sbjct: 541 FPSSLAFLN 549
Score = 57.3 bits (139), Expect = 5e-10
Identities = 27/137 (19%), Positives = 45/137 (32%), Gaps = 35/137 (25%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
LDLS +IQ+++ A Q L L +L L+ N I
Sbjct: 57 LDLSRCEIQTIEDGAYQSLS----HL-------------STLILTGNPI----------- 88
Query: 77 RTILDPDLIGW------IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR 130
L + N+ +++ + LK L + N I+ +
Sbjct: 89 -QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 131 VNSLRTLSLYGNPIEKI 147
+ +L L L N I+ I
Sbjct: 148 LTNLEHLDLSSNKIQSI 164
Score = 52.0 bits (125), Expect = 3e-08
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 54 DTRSLWLSHNKISLVY-----GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPN 108
T++L LS N + + L +DLS I+ ++ + + +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQV-----------LDLSRCEIQTIEDGAYQSLSH 77
Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
L L L N I+ L++ ++SL+ L + +
Sbjct: 78 LSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASL 115
Score = 50.8 bits (122), Expect = 8e-08
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 16/94 (17%)
Query: 56 RSLWLSHNKIS-----LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLK 110
L LS ++ L SL +++S NN ++D + +L+
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQV-----------LNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 111 ILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
+L N I + +SL L+L N
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 45.4 bits (108), Expect = 5e-06
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 12/104 (11%)
Query: 56 RSLWLSHNKISLV------YGLDSLV-----HRTILDPDLIGWIDLSFNNIKNVDKNMFT 104
S L I V +G L L L+F + K +
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344
Query: 105 NFPNLKILYLHKNQIE-EYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ P+L+ L L +N + + SL+ L L N + +
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388
Score = 41.9 bits (99), Expect = 7e-05
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 56 RSLWLSHNKISLV---YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKIL 112
L L +N SL + L + L+ + N++ DK+ NL I
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHR--LVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 113 YLHKNQIEEYLS--VFVLRRVNSLRTLSLYGNPIEKI 147
++ YL + + + ++ + SL IE++
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297
Score = 40.0 bits (94), Expect = 3e-04
Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 28/106 (26%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV--YGLDSL 74
LDLS Q++ L A L L + L +SHN + + L
Sbjct: 475 LDLSQCQLEQLSPTAFNSL----SSL-------------QVLNMSHNNFFSLDTFPYKCL 517
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFP-NLKILYLHKNQI 119
+LD S N+I K +FP +L L L +N
Sbjct: 518 NSLQVLD--------YSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 33.5 bits (77), Expect = 0.042
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
N + N+ + K L L N + L + L+ L L I+ I
Sbjct: 13 QCMELNFYKIPDNLP---FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTI 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 58.1 bits (141), Expect = 2e-10
Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 15/120 (12%)
Query: 56 RSLWLSHNKISLVYGLDSLVH--------RTILDPDLIG--WIDLSFNNIKNVDKNMFTN 105
R+L L++N + + S+ + G I L+ N I +
Sbjct: 83 RTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC 142
Query: 106 FPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
++ L L N+I+ + ++L L+L N I ++ + +L TLD
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-----QVVFAKLKTLD 197
Score = 53.1 bits (128), Expect = 1e-08
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 21/98 (21%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIG------WIDLSFNNIKNVDKNMFTNFPNL 109
+ ++ + + L +DLS N + + F L
Sbjct: 13 KIEKVTDSSL------------KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 110 KILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
++L L N + E L + L +LRTL L N ++++
Sbjct: 61 ELLNLSSNVLYETLDLESLS---TLRTLDLNNNYVQEL 95
Score = 52.3 bits (126), Expect = 2e-08
Identities = 24/131 (18%), Positives = 40/131 (30%), Gaps = 27/131 (20%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
LDL +I +++ + + L L +N I V G
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTL----------------EHLNLQYNFIYDVKGQVVFAK 192
Query: 77 RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRT 136
LD LS N + + F + + + L N++ + LR +L
Sbjct: 193 LKTLD--------LSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEK-ALRFSQNLEH 241
Query: 137 LSLYGNPIEKI 147
L GN
Sbjct: 242 FDLRGNGFHCG 252
Score = 48.1 bits (115), Expect = 5e-07
Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 35/133 (26%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYG--LDSL 74
++ ++ Q + + L LS N +S + L
Sbjct: 15 EKVTDSSLKQALASLRQSAW----NV-------------KELDLSGNPLSQISAADLAPF 57
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
+L +LS N + + L+ L L+ N ++E L S+
Sbjct: 58 TKLELL--------NLSSNVLYETLD--LESLSTLRTLDLNNNYVQE------LLVGPSI 101
Query: 135 RTLSLYGNPIEKI 147
TL N I ++
Sbjct: 102 ETLHAANNNISRV 114
Score = 36.5 bits (85), Expect = 0.004
Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 102 MFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ N KI + + +++ + + +++ L L GNP+ +I
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQI 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 57.5 bits (139), Expect = 4e-10
Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 15/120 (12%)
Query: 56 RSLWLSHNKISLVYGLDSLVH--------RTILDPDLIG--WIDLSFNNIKNVDKNMFTN 105
R+L L++N + + S+ + G I L+ N I +
Sbjct: 83 RTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC 142
Query: 106 FPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
++ L L N+I+ + ++L L+L N I ++ + +L TLD
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-----QVVFAKLKTLD 197
Score = 51.0 bits (122), Expect = 7e-08
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 21/99 (21%)
Query: 55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIG------WIDLSFNNIKNVDKNMFTNFPN 108
+ ++ + + L +DLS N + + F
Sbjct: 12 YKIEKVTDSSL------------KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59
Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
L++L L N + E L + L +LRTL L N ++++
Sbjct: 60 LELLNLSSNVLYETLDLESLS---TLRTLDLNNNYVQEL 95
Score = 48.7 bits (116), Expect = 4e-07
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146
++ +++K ++ + N+K L L N + + +S L L L+L N + +
Sbjct: 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYE 72
Query: 147 IRE 149
+
Sbjct: 73 TLD 75
Score = 41.0 bits (96), Expect = 1e-04
Identities = 27/182 (14%), Positives = 55/182 (30%), Gaps = 25/182 (13%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLG------ESPPMLVGRYDTRSLWLSHNKISLV-- 68
LDL +I +++ + + L V ++L LS NK++ +
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP 208
Query: 69 --YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVF 126
+ WI L N + ++K NL+ L N
Sbjct: 209 EFQSAAGVT-----------WISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRD 256
Query: 127 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRS 186
+ ++T++ ++K+ + +P L + + L A R
Sbjct: 257 FFSKNQRVQTVAK--QTVKKL-TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRK 313
Query: 187 YL 188
Sbjct: 314 EH 315
Score = 35.2 bits (81), Expect = 0.012
Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 102 MFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ N KI + + +++ + + +++ L L GNP+ +I
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQI 49
Score = 34.4 bits (79), Expect = 0.019
Identities = 14/114 (12%), Positives = 28/114 (24%), Gaps = 1/114 (0%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
ID + V + L K ++E +S R L ++
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS-NGRRAHAELDGTLQQAVGQIEL 399
Query: 148 REYRAVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSYLLPKYEKLEAATFK 201
+ S + + + E+Q K +L +
Sbjct: 400 QHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENAR 453
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 57.2 bits (139), Expect = 4e-10
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
+ L + N+IS + L++L L L+ N + N D + NL L+L
Sbjct: 268 KMLNVGSNQISDISVLNNLSQLNSLF--------LNNNQLGNEDMEVIGGLTNLTTLFLS 319
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146
+N I + L ++ + + I+K
Sbjct: 320 QNHIT---DIRPLASLSKMDSADFANQVIKK 347
Score = 56.0 bits (136), Expect = 1e-09
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
L + N+IS + + L +L+ + N I ++ + N L L+L+
Sbjct: 246 TWLEIGTNQISDINAVKDLTKLKMLN--------VGSNQISDIS--VLNNLSQLNSLFLN 295
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
NQ+ + V+ + +L TL L N I IR
Sbjct: 296 NNQLG-NEDMEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 50.2 bits (121), Expect = 9e-08
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 13/92 (14%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
N+I+ + + ++ L + N I ++ N L L +
Sbjct: 202 HYFTAYVNQITDITPVANMTRLNSLK--------IGNNKITDLSP--LANLSQLTWLEIG 251
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
NQI + ++ + L+ L++ N I I
Sbjct: 252 TNQIS---DINAVKDLTKLKMLNVGSNQISDI 280
Score = 49.1 bits (118), Expect = 2e-07
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
L ++ K++ + G++ L + L+ L+ N I ++ +N L LY+
Sbjct: 47 TKLVVAGEKVASIQGIEYLTNLEYLN--------LNGNQITDISP--LSNLVKLTNLYIG 96
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
N+I + ++ L +LR L L + I I
Sbjct: 97 TNKITDISALQNL---TNLRELYLNEDNISDI 125
Score = 46.0 bits (110), Expect = 3e-06
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 20/107 (18%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILD---------PDLIG------WIDLSFNNIKNVDK 100
R L+L+ + IS + L +L L+ + ++ ++ + +K+V
Sbjct: 113 RELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP 172
Query: 101 NMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
N +L L L+ NQIE + L + SL + Y N I I
Sbjct: 173 --IANLTDLYSLSLNYNQIE---DISPLASLTSLHYFTAYVNQITDI 214
Score = 41.4 bits (98), Expect = 1e-04
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 13/91 (14%)
Query: 57 SLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHK 116
+L I+ ++ L L ++ +V ++ L +
Sbjct: 4 TLATLPAPINQIFPDADLAEGIRAV--------LQKASVTDVVT--QEELESITKLVVAG 53
Query: 117 NQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
++ S+ + + +L L+L GN I I
Sbjct: 54 EKVA---SIQGIEYLTNLEYLNLNGNQITDI 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 56.1 bits (136), Expect = 6e-10
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 54 DTRSLWLSHNKI-SLVYG-LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
DT+ L L NK+ SL L +L L+ N ++ + +F NL+
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLY--------LNDNKLQTLPAGIFKELKNLET 89
Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
L++ N+++ L + V ++ +L L L N ++ +
Sbjct: 90 LWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSL 124
Score = 56.1 bits (136), Expect = 7e-10
Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 28/133 (21%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL-DSL 74
L ++ ++Q+L +L + L L N++ SL + DSL
Sbjct: 90 LWVTDNKLQALPIGVFDQLV-----------------NLAELRLDRNQLKSLPPRVFDSL 132
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
T L L +N ++++ K +F +LK L L+ NQ++ + ++ L
Sbjct: 133 TKLTYLS--------LGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTEL 183
Query: 135 RTLSLYGNPIEKI 147
+TL L N ++++
Sbjct: 184 KTLKLDNNQLKRV 196
Score = 51.9 bits (125), Expect = 2e-08
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 56 RSLWLSHNKI-SLVYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
L L +N++ SL G+ D L L L N +K V + F LK L
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELR--------LYNNQLKRVPEGAFDKLTELKTLK 187
Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNP 143
L NQ++ + + L+ L L NP
Sbjct: 188 LDNNQLKR-VPEGAFDSLEKLKMLQLQENP 216
Score = 34.2 bits (79), Expect = 0.017
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 93 NNIKNVD--KNMFTNFP-----NLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIE 145
NN +VD T P + K L L N++ L R+ LR L L N ++
Sbjct: 16 NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ 74
Query: 146 KI 147
+
Sbjct: 75 TL 76
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 57.2 bits (138), Expect = 7e-10
Identities = 16/150 (10%), Positives = 46/150 (30%), Gaps = 25/150 (16%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV---YGLDS 73
L+++ + S ++ + ++ +N + L
Sbjct: 520 LNIACNRGISAAQLKAD--------WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571
Query: 74 LVHRTILD---------PDLIG-----WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI 119
+V +LD + L +N I+ + ++ ++ L N++
Sbjct: 572 MVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631
Query: 120 EEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
+ ++F + V + ++ N I
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661
Score = 51.8 bits (124), Expect = 4e-08
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 9/116 (7%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
S+ S+NKI G + + LS+N I+ +F + + L
Sbjct: 647 GSVDFSYNKIGSE-GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705
Query: 116 KNQIEE------YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
N + + L T+ L N + + + +T +P L +D
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD--DFRATTLPYLSNMD 759
Score = 46.4 bits (110), Expect = 2e-06
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 7/93 (7%)
Query: 56 RSLWLSHNKIS-LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYL 114
++ +S+N S + + D N I T P+L L +
Sbjct: 756 SNMDVSYNCFSSFPTQPLNSSQLKAFG--IRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813
Query: 115 HKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
N I + + + L L + NP I
Sbjct: 814 GSNDIRK-VDEKLT---PQLYILDIADNPNISI 842
Score = 46.0 bits (109), Expect = 3e-06
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 25/105 (23%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIG------WIDLSFNNIKNVDKNM------- 102
++ LS+N+I +L I LS N + ++ +N
Sbjct: 676 STVTLSYNEI------------QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723
Query: 103 FTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ N L + L N++ F + L + + N
Sbjct: 724 YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768
Score = 44.1 bits (104), Expect = 2e-05
Identities = 15/108 (13%), Positives = 36/108 (33%), Gaps = 25/108 (23%)
Query: 56 RSLWLSHNKI-----SLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK---------N 101
+ L + +Y L L ++++ N + + +
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQS-----------LNIACNRGISAAQLKADWTRLAD 542
Query: 102 MFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
P ++I Y+ N +EE+ + L+++ L L N + +
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA 590
Score = 37.9 bits (88), Expect = 0.002
Identities = 11/115 (9%), Positives = 37/115 (32%), Gaps = 12/115 (10%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
+ ++ +++ + + + ++ ++N +L + L+
Sbjct: 451 QIIYFANSPFT-----------YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFIL 170
L L + L++L++ N + +A + + T + I
Sbjct: 500 NCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553
Score = 33.3 bits (76), Expect = 0.048
Identities = 6/52 (11%), Positives = 14/52 (26%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSL 139
+ L+ K + LK+L + +F + +
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379
Score = 30.6 bits (69), Expect = 0.43
Identities = 13/100 (13%), Positives = 24/100 (24%), Gaps = 18/100 (18%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIG------WIDLSFNNIKNVDKNMFTNFPNL 109
L L+ PD IG + ++ +
Sbjct: 326 TGLSLAGFGA------------KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTP 373
Query: 110 KILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
+ K++I + L L L + I + E
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413
Score = 28.3 bits (63), Expect = 2.1
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 13/68 (19%)
Query: 56 RSLWLSHNKISLV--YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
L + N I V L +D++ N ++D + +
Sbjct: 809 IQLQIGSNDIRKVDEKLTPQLYI-----------LDIADNPNISIDVTSVCPYIEAGMYV 857
Query: 114 LHKNQIEE 121
L ++ ++
Sbjct: 858 LLYDKTQD 865
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 56.2 bits (136), Expect = 7e-10
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 13/137 (9%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
L+L +N++ L L + IL + N +K++ M L++L LH
Sbjct: 109 SRLFLDNNELRDTDSLIHLKNLEILS--------IRNNKLKSIV--MLGFLSKLEVLDLH 158
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ 175
N+I + L R+ + + L G + + D +I P
Sbjct: 159 GNEIT---NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215
Query: 176 ETNALNAEIRSYLLPKY 192
+ + LP Y
Sbjct: 216 NGGSYVDGCVLWELPVY 232
Score = 51.9 bits (125), Expect = 2e-08
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
+ L LSHN+IS + L L L ++ N +KN++ L L+L
Sbjct: 66 KELHLSHNQISDLSPLKDLTKLEEL--------SVNRNRLKNLN---GIPSACLSRLFLD 114
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
N++ L + +L LS+ N ++ I
Sbjct: 115 NNELR---DTDSLIHLKNLEILSIRNNKLKSI 143
Score = 51.6 bits (124), Expect = 3e-08
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
L ++ + L + +NI+++ F NLK L+L
Sbjct: 22 VKQNLGKQSVTDLVSQKELSGVQNF--------NGDNSNIQSLA--GMQFFTNLKELHLS 71
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
NQI + + L+ + L LS+ N ++ +
Sbjct: 72 HNQISD---LSPLKDLTKLEELSVNRNRLKNL 100
Score = 46.2 bits (110), Expect = 2e-06
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
++ ++ I + G+ + L LS N I ++ + L+ L ++
Sbjct: 44 QNFNGDNSNIQSLAGMQFFTNLKEL--------HLSHNQISDLS--PLKDLTKLEELSVN 93
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+N+++ + L L L N +
Sbjct: 94 RNRLKNLNGIPSA----CLSRLFLDNNELRDT 121
Score = 33.1 bits (76), Expect = 0.048
Identities = 7/55 (12%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
I V + N L K + + +S + ++ ++ + + I+ +
Sbjct: 7 TPINQVFPD--PGLANAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNIQSL 56
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 55.8 bits (135), Expect = 1e-09
Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 13/148 (8%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
+ L + + ++S + L +L T L N I ++ + PNL ++L
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLK--------ADDNKISDIS--PLASLPNLIEVHLK 203
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ 175
NQI V L ++L ++L I + + + I P+
Sbjct: 204 NNQIS---DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATIS 260
Query: 176 ETNALNAEIRSYLLPKYEKLEAATFKRT 203
+ + ++ L + + TF ++
Sbjct: 261 DNGTYASPNLTWNLTSFINNVSYTFNQS 288
Score = 50.8 bits (122), Expect = 5e-08
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
+L ++ + G+ L + L +L N I ++ N + L L
Sbjct: 44 TTLSAFGTGVTTIEGVQYLNNLIGL--------ELKDNQITDLAP--LKNLTKITELELS 93
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
N ++ +V + + S++TL L I +
Sbjct: 94 GNPLK---NVSAIAGLQSIKTLDLTSTQITDV 122
Score = 50.8 bits (122), Expect = 6e-08
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
L LS N + V + L LD L+ I +V NL++LYL
Sbjct: 88 TELELSGNPLKNVSAIAGLQSIKTLD--------LTSTQITDVTP--LAGLSNLQVLYLD 137
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
NQI ++ L + +L+ LS+ + +
Sbjct: 138 LNQIT---NISPLAGLTNLQYLSIGNAQVSDL 166
Score = 48.5 bits (116), Expect = 4e-07
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 13/91 (14%)
Query: 57 SLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHK 116
+ + ++ L T L + ++ NL L L
Sbjct: 23 KIAAGKSNVTDTVTQADLDGITTL--------SAFGTGVTTIE--GVQYLNNLIGLELKD 72
Query: 117 NQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
NQI + L+ + + L L GNP++ +
Sbjct: 73 NQIT---DLAPLKNLTKITELELSGNPLKNV 100
Score = 36.6 bits (85), Expect = 0.003
Identities = 10/88 (11%), Positives = 30/88 (34%), Gaps = 13/88 (14%)
Query: 60 LSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI 119
I++++ +L + + +N+ + + + L +
Sbjct: 4 TQPTAINVIFPDPALANAIKIA--------AGKSNVTDTVT--QADLDGITTLSAFGTGV 53
Query: 120 EEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
++ ++ +N+L L L N I +
Sbjct: 54 T---TIEGVQYLNNLIGLELKDNQITDL 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 54.4 bits (131), Expect = 4e-09
Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 22/119 (18%)
Query: 54 DTRSLWLSHNKISLV-----YGLDSLVHRTILDPDLIGWIDLSFNNI-KNVDKNMFTNFP 107
+ L K+ ++ G L I++S N++ + ++ ++F+N P
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLE-----------KIEISQNDVLEVIEADVFSNLP 79
Query: 108 NLKILYL-HKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
L + + N + Y++ + + +L+ L + I+ + + + S Q V LD
Sbjct: 80 KLHEIRIEKANNL-LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS---LQKVLLD 134
Score = 51.4 bits (123), Expect = 5e-08
Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 24/127 (18%)
Query: 17 LDLSF-QQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLV 75
LD+ I ++++ + L + LWL+ N I +
Sbjct: 133 LDIQDNINIHTIERNSFVGLSFE----------------SVILWLNKNGIQ------EIH 170
Query: 76 HRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLR 135
+ L NN++ + ++F IL + + +I L + L + LR
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPSYGLENLKKLR 229
Query: 136 TLSLYGN 142
S Y
Sbjct: 230 ARSTYNL 236
Score = 47.9 bits (114), Expect = 7e-07
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 21/112 (18%)
Query: 56 RSLWLSHNKISLV-----YGLDSLVHRTILD---------------PDLIGWIDLSFNNI 95
+ L +S+ I + V I D + L+ N I
Sbjct: 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166
Query: 96 KNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ + + F ++ N +EE L V + L + I +
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNLEE-LPNDVFHGASGPVILDISRTRIHSL 217
Score = 36.7 bits (85), Expect = 0.004
Identities = 4/57 (7%), Positives = 15/57 (26%), Gaps = 4/57 (7%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
+ + + ++ N L ++ + L + + N +
Sbjct: 14 FLCQESKVTEIPSDLP---RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDV 66
Score = 27.5 bits (61), Expect = 3.4
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 21/107 (19%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGE-------SPPMLVGRYDTRSLWLSHNKISLV- 68
L L+ IQ + A + + L + + G L +S +I +
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218
Query: 69 -YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYL 114
YGL++L S N+K + L L
Sbjct: 219 SYGLENLKKLRAR----------STYNLKKLP--TLEKLVALMEASL 253
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 52.7 bits (127), Expect = 5e-09
Identities = 32/140 (22%), Positives = 49/140 (35%), Gaps = 40/140 (28%)
Query: 15 IP-----LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLV 68
IP L L+ ++ + + P++ +L L N++ +
Sbjct: 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKL----------------ELKRNQLTGIE 70
Query: 69 YGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSV-- 125
+ H L L N IK + MF LK L L+ NQI V
Sbjct: 71 PNAFEGASHIQELQ--------LGENKIKEISNKMFLGLHQLKTLNLYDNQIS---CVMP 119
Query: 126 --FVLRRVNSLRTLSLYGNP 143
F +NSL +L+L NP
Sbjct: 120 GSF--EHLNSLTSLNLASNP 137
Score = 52.7 bits (127), Expect = 6e-09
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 54 DTRSLWLSHNKISLVYG---LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLK 110
T L L+ N++ + L H ++L N + ++ N F +++
Sbjct: 30 HTTELLLNDNELGRISSDGLFGRLPHLV--------KLELKRNQLTGIEPNAFEGASHIQ 81
Query: 111 ILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
L L +N+I+E +S + ++ L+TL+LY N I +
Sbjct: 82 ELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISCV 117
Score = 30.4 bits (69), Expect = 0.27
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 110 KILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
L L+ N++ S + R+ L L L N + I
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP 71
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 54.3 bits (131), Expect = 6e-09
Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
L +N++ L + L ++L++N I + N ++ L
Sbjct: 333 GMLECLYNQLEGK--LPAFGSEIKLA-----SLNLAYNQITEIPANFCGFTEQVENLSFA 385
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
N+++ ++F + V+ + + N I +
Sbjct: 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417
Score = 45.8 bits (109), Expect = 4e-06
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 17/104 (16%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIG------WIDLSFNNIKNVDKNMFTNFPNL 109
++ S+N+I +D + I+LS N I K +F+ L
Sbjct: 405 SAIDFSYNEIG---SVDGKNFDPL--DPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459
Query: 110 KILYLHKNQIEE------YLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ L N + E + L ++ L N + K+
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL 503
Score = 40.4 bits (95), Expect = 3e-04
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDL--IGWIDLSFNNIKNVDK-NMFTNFPNLKIL 112
+ + ++ N+ L P I I + +NN+K L +L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335
Query: 113 YLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
NQ+E L F L +L+L N I +I
Sbjct: 336 ECLYNQLEGKLPAFG--SEIKLASLNLAYNQITEI 368
Score = 40.0 bits (94), Expect = 3e-04
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 7/93 (7%)
Query: 56 RSLWLSHNKIS-LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYL 114
+ LS+N S + + D N T P+L L +
Sbjct: 516 VGIDLSYNSFSKFPTQPLNSSTLKGFG--IRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573
Query: 115 HKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
N I + ++ + ++ L + NP I
Sbjct: 574 GSNDIRK-VNEKIT---PNISVLDIKDNPNISI 602
Score = 38.9 bits (91), Expect = 7e-04
Identities = 9/107 (8%), Positives = 31/107 (28%), Gaps = 20/107 (18%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKN-----VDKNMFT------ 104
R ++ ++ ++ + DL ++N+K+ V
Sbjct: 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268
Query: 105 --NFPNLKILYLHKNQIEEYLSVFV-------LRRVNSLRTLSLYGN 142
P ++++ + N+ + ++ + + N
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315
Score = 38.9 bits (91), Expect = 7e-04
Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 26/126 (20%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVH-------------RLGESPPMLVGRYDT-RSLWLSH 62
+D S+ +I S+D L P ++ + P L S+ L
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466
Query: 63 NKISLVYGLDSLVHRTILDPDLIG------WIDLSFNNIKNVDKNM-FTNFPNLKILYLH 115
N ++ + + + IDL FN + + + T P L + L
Sbjct: 467 NMLT---EIPKNSLKDE--NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS 521
Query: 116 KNQIEE 121
N +
Sbjct: 522 YNSFSK 527
Score = 34.6 bits (80), Expect = 0.019
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 3/86 (3%)
Query: 57 SLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHK 116
L + I+ S+ + + I NNI V K + L+ Y+
Sbjct: 158 FSDLIKDCINSDPQQKSIKKSSRITLKDT-QIGQLSNNITFVSKAVM-RLTKLRQFYMGN 215
Query: 117 NQIEEYLSVFVLRRVNSLRTLSLYGN 142
+ ++ + Y
Sbjct: 216 SPFVA-ENICEAWENENSEYAQQYKT 240
Score = 34.2 bits (79), Expect = 0.027
Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
L + N I ++ I P++ +D+ N ++D + + + L
Sbjct: 569 TQLQIGSNDIR---KVNE----KIT-PNIS-VLDIKDNPNISIDLSYVCPYIEAGMYMLF 619
Query: 116 KNQIEE 121
++ ++
Sbjct: 620 YDKTQD 625
Score = 28.9 bits (65), Expect = 1.2
Identities = 5/52 (9%), Positives = 17/52 (32%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSL 139
+ L + L++L L + + +F + +++ +
Sbjct: 86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137
Score = 27.7 bits (62), Expect = 3.2
Identities = 14/113 (12%), Positives = 27/113 (23%), Gaps = 26/113 (23%)
Query: 56 RSLWLSHNKISLVY---------GLDSLVHRTILDPDLIG----------WIDLSFNNIK 96
L L + + S + + + DL + I
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167
Query: 97 NVD-----KNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
+ K + N I +S + R+ LR + +P
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA-VMRLTKLRQFYMGNSPF 218
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 54.1 bits (130), Expect = 6e-09
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
Query: 54 DTRSLWLSHNKI-SLVYG-LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
T++L LS N I L + L +L LS N I+++D ++F +L+
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVL--------RLSHNRIRSLDFHVFLFNQDLEY 104
Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
L + N+++ +S + SLR L L N
Sbjct: 105 LDVSHNRLQN-ISCCPMA---SLRHLDLSFNDF 133
Score = 46.4 bits (110), Expect = 2e-06
Identities = 28/133 (21%), Positives = 42/133 (31%), Gaps = 30/133 (22%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL-DSL 74
L LS I L + L L R L LSHN+I SL + +
Sbjct: 57 LSLSQNSISELRMPDISFLS----EL-------------RVLRLSHNRIRSLDFHVFLFN 99
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
L D+S N ++N+ +L+ L L N + + L
Sbjct: 100 QDLEYL--------DVSHNRLQNIS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148
Query: 135 RTLSLYGNPIEKI 147
L L ++
Sbjct: 149 TFLGLSAAKFRQL 161
Score = 43.7 bits (103), Expect = 2e-05
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 58 LWLSHNKI-SLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHK 116
L L +N+I S+ + L L+ ++ N +K+V +F +L+ ++LH
Sbjct: 455 LDLHNNRIMSIPKDVTHLQALQELN--------VASNQLKSVPDGVFDRLTSLQYIWLHD 506
Query: 117 NQIE------EYLSVFVLRRVNSLRTLSLYGNP 143
N + YLS ++ + +R + P
Sbjct: 507 NPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAP 539
Score = 36.0 bits (83), Expect = 0.006
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 54 DTRSLWLSHNKI-SLVYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFP-NLK 110
+ SL + SL D + I ++LS N + ++F P +K
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCA----WAESILVLNLSSNMLT---GSVFRCLPPKVK 453
Query: 111 ILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+L LH N+I + V L+ L++ N ++ +
Sbjct: 454 VLDLHNNRIMS-IPKDVTHLQA-LQELNVASNQLKSV 488
Score = 35.2 bits (81), Expect = 0.011
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 12/97 (12%)
Query: 54 DTRSLWLSHNKIS--LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK--NMFTNFPNL 109
L + N + + G +L L L N +KN K M N +L
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLI--------LQRNGLKNFFKVALMTKNMSSL 405
Query: 110 KILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146
+ L + N + + S+ L+L N +
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442
Score = 33.7 bits (77), Expect = 0.033
Identities = 8/80 (10%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146
+++ + N + + L+ L L +N ++ + V ++ +L +
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA--LMTKNMSSLETLDVSLNS 414
Query: 147 IREYRAVVSTMIPQ-LVTLD 165
+ + + + ++ L+
Sbjct: 415 LNSHAYDRTCAWAESILVLN 434
Score = 33.7 bits (77), Expect = 0.034
Identities = 9/91 (9%), Positives = 26/91 (28%), Gaps = 2/91 (2%)
Query: 57 SLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHK 116
L + + I+ + + L+ + + +++ F + I L
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLM-IEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338
Query: 117 NQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ + + +S L+ N
Sbjct: 339 SDTPF-IHMVCPPSPSSFTFLNFTQNVFTDS 368
Score = 32.9 bits (75), Expect = 0.069
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 107 PNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
P K L L +N I E L + + ++ LR L L N I +
Sbjct: 52 PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSL 91
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 53.2 bits (127), Expect = 1e-08
Identities = 11/86 (12%), Positives = 31/86 (36%), Gaps = 10/86 (11%)
Query: 65 ISLVYGLDSLVHRTILDPDLIGWIDLSFNN-IKNVDKNMFTNFPNLKILYLHKNQIEEYL 123
+ ++ L + T L + +++++ L+ L + K+ + ++
Sbjct: 21 LDSLHHLPGAENLTELY--------IENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FV 71
Query: 124 SVFVLRRVNSLRTLSLYGNPIEKIRE 149
+ L L+L N +E +
Sbjct: 72 APDAFHFTPRLSRLNLSFNALESLSW 97
Score = 51.7 bits (123), Expect = 3e-08
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 19/110 (17%)
Query: 41 RLGESPPMLVGRYDTRSLWLSHNK-ISLV-----YGLDSLVHRTILDPDLIGWIDLSFNN 94
+S L G + L++ + + + + GL L + + + +
Sbjct: 19 GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN-----------LTIVKSG 67
Query: 95 IKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
++ V + F P L L L N + E LS ++ + SL+ L L GNP+
Sbjct: 68 LRFVAPDAFHFTPRLSRLNLSFNAL-ESLSWKTVQGL-SLQELVLSGNPL 115
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 51.4 bits (123), Expect = 5e-08
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
Query: 54 DTRSLWLSHNKI-SLVYG-LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
T L +S N I L + SL IL +S N I+ +D ++F L+
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILI--------ISHNRIQYLDISVFKFNQELEY 73
Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
L L N+ L +L+ L L N + +
Sbjct: 74 LDLSHNK----LVKISCHPTVNLKHLDLSFNAFDAL 105
Score = 51.0 bits (122), Expect = 6e-08
Identities = 28/154 (18%), Positives = 50/154 (32%), Gaps = 30/154 (19%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLG------ESPPMLVGRYD----TRSLWLSHNKIS 66
LD S + L + L + + + L +S N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 67 LVYG---LDSLVHRTILD--------------PDLIGWIDLSFNNIKNVDKNMFTNFPNL 109
L+ P I +DL N IK++ K + L
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV-KLEAL 446
Query: 110 KILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNP 143
+ L + NQ++ + + R+ SL+ + L+ NP
Sbjct: 447 QELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNP 479
Score = 49.1 bits (117), Expect = 3e-07
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 12/98 (12%)
Query: 54 DTRSLWLSHNKISLVY--GLDSLVHRTILDPDLIGWIDLSFNNIKNVDK--NMFTNFPNL 109
L S+N ++ L L L N +K + K M T +L
Sbjct: 325 PFLHLDFSNNLLTDTVFENCGHLTELETLI--------LQMNQLKELSKIAEMTTQMKSL 376
Query: 110 KILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ L + +N + SL +L++ N +
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414
Score = 48.7 bits (116), Expect = 4e-07
Identities = 29/133 (21%), Positives = 41/133 (30%), Gaps = 30/133 (22%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYG-LDSL 74
L++S I L + L L R L +SHN+I L
Sbjct: 26 LNISQNYISELWTSDILSL-----------SKL------RILIISHNRIQYLDISVFKFN 68
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
L DLS N + + NLK L L N + ++ L
Sbjct: 69 QELEYL--------DLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117
Query: 135 RTLSLYGNPIEKI 147
+ L L +EK
Sbjct: 118 KFLGLSTTHLEKS 130
Score = 36.0 bits (83), Expect = 0.007
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+D S N + +V K++ IL + +N I E L + ++ LR L + N I+ +
Sbjct: 5 VDRSKNGLIHVPKDLSQK---TTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYL 60
Score = 34.5 bits (79), Expect = 0.022
Identities = 5/59 (8%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ + ++ F N+ I + + + +++ L N +
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM-VHMLCPSKISPFLHLDFSNNLLTDT 339
Score = 33.3 bits (76), Expect = 0.052
Identities = 25/143 (17%), Positives = 43/143 (30%), Gaps = 38/143 (26%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
L +S +IQ LD + + + L LSHNK+ + V+
Sbjct: 50 LIISHNRIQYLDISVFKFNQ-----------------ELEYLDLSHNKLVKIS-CHPTVN 91
Query: 77 RTILD---------PDL--------IGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI 119
LD P + ++ LS +++ +L I +
Sbjct: 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS---VLPIAHLNISKVLLVLG 148
Query: 120 EEYLSVFVLRRVNSLRTLSLYGN 142
E Y + T SL+
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIV 171
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 50.7 bits (122), Expect = 8e-08
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 18/105 (17%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILD-----PDLIG--------WIDLSFNNIKNVDKNM 102
L LS N IS + L L L DL +D+S N + ++
Sbjct: 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-- 194
Query: 103 FTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
NL+ L NQI + L + +L LSL GN ++ I
Sbjct: 195 LAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLKDI 236
Score = 50.3 bits (121), Expect = 1e-07
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
+ S+N+++ + L +L + ++ N I ++ N NL L L
Sbjct: 71 TQINFSNNQLTDITPLKNLTKLVDIL--------MNNNQIADITP--LANLTNLTGLTLF 120
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
NQI + L+ + +L L L N I I
Sbjct: 121 NNQIT---DIDPLKNLTNLNRLELSSNTISDI 149
Score = 50.3 bits (121), Expect = 1e-07
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
+L L+ N++ + + +L + T L L FNNI ++ + ++ L+ L+ +
Sbjct: 290 TNLELNENQLEDISPISNLKNLTYLT--------LYFNNISDI--SPVSSLTKLQRLFFY 339
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
N++ V L + ++ LS N I +
Sbjct: 340 NNKVS---DVSSLANLTNINWLSAGHNQISDLTP 370
Score = 50.0 bits (120), Expect = 2e-07
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
SL ++N+IS + L L + L L+ N +K++ + NL L L
Sbjct: 202 ESLIATNNQISDITPLGILTNLDELS--------LNGNQLKDIGT--LASLTNLTDLDLA 251
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
NQI + L L L L N I I
Sbjct: 252 NNQISNLAPLSGL---TKLTELKLGANQISNI 280
Score = 49.2 bits (118), Expect = 3e-07
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
+L I + G++ L + T + + S N + ++ N L + ++
Sbjct: 49 TTLQADRLGIKSIDGVEYLNNLTQI--------NFSNNQLTDITP--LKNLTKLVDILMN 98
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
NQI + L + +L L+L+ N I I
Sbjct: 99 NNQIA---DITPLANLTNLTGLTLFNNQITDI 127
Score = 48.8 bits (117), Expect = 4e-07
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
L L N+IS + L L T L +L+ N ++++ +N NL L L+
Sbjct: 268 TELKLGANQISNISPLAGLTALTNL--------ELNENQLEDISP--ISNLKNLTYLTLY 317
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
N I + + + L+ L Y N + +
Sbjct: 318 FNNIS---DISPVSSLTKLQRLFFYNNKVSDVSS 348
Score = 45.7 bits (109), Expect = 3e-06
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 13/92 (14%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
L ++ L T L IK++D NL +
Sbjct: 27 MKTVLGKTNVTDTVSQTDLDQVTTL--------QADRLGIKSIDG--VEYLNNLTQINFS 76
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
NQ+ + L+ + L + + N I I
Sbjct: 77 NNQLT---DITPLKNLTKLVDILMNNNQIADI 105
Score = 36.9 bits (86), Expect = 0.003
Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 11/94 (11%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
L HN+IS + L +L T L L+ N N N+ I
Sbjct: 356 NWLSAGHNQISDLTPLANLTRITQLG--------LNDQAWTNAPVNYKA---NVSIPNTV 404
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
KN ++ + S + N E
Sbjct: 405 KNVTGALIAPATISDGGSYTEPDITWNLPSYTNE 438
Score = 36.9 bits (86), Expect = 0.003
Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 13/88 (14%)
Query: 60 LSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI 119
I+ ++ +L + L N+ + T+ + L + I
Sbjct: 9 TQDTPINQIFTDTALAEKMKTV--------LGKTNVTDTVS--QTDLDQVTTLQADRLGI 58
Query: 120 EEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ V L +L ++ N + I
Sbjct: 59 KSIDGVEYLN---NLTQINFSNNQLTDI 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 48.2 bits (115), Expect = 4e-07
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 28/133 (21%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL-DSL 74
L+L + Q+Q+L L + +L L++N++ SL G+ D L
Sbjct: 64 LNLDYNQLQTLSAGVFDDLT-----------------ELGTLGLANNQLASLPLGVFDHL 106
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
L L N +K++ +F LK L L+ NQ++ + ++ +L
Sbjct: 107 TQLDKLY--------LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNL 157
Query: 135 RTLSLYGNPIEKI 147
+TLSL N ++ +
Sbjct: 158 QTLSLSTNQLQSV 170
Score = 45.5 bits (108), Expect = 3e-06
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 54 DTRSLWLSHNKISLV--YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
DT L L ++ + L T L+ L +N ++ + +F + L
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLN--------LDYNQLQTLSAGVFDDLTELGT 87
Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
L L NQ+ L + V + L L L GN ++ +
Sbjct: 88 LGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSL 122
Score = 35.8 bits (83), Expect = 0.006
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 23/114 (20%)
Query: 17 LDLSFQQIQSL-----DK-VAVQKLKPNVHRLGESPPMLVGRYDT----RSLWLSHNKI- 65
L L+ Q+ SL D + KL ++L P G +D + L L+ N++
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS---GVFDRLTKLKELRLNTNQLQ 144
Query: 66 SLVYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQ 118
S+ G D L + L LS N +++V F L+ + L NQ
Sbjct: 145 SIPAGAFDKLTNLQTLS--------LSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 46.5 bits (111), Expect = 6e-07
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 54 DTRSLWLSHNKI-SLVYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
T+ L+L N+I L G+ D L T LD L N + + +F L
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLD--------LDNNQLTVLPAGVFDKLTQLTQ 82
Query: 112 LYLHKNQIEEYLSV----FVLRRVNSLRTLSLYGNP 143
L L+ NQ++ S+ F + SL + L NP
Sbjct: 83 LSLNDNQLK---SIPRGAF--DNLKSLTHIWLLNNP 113
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 47.3 bits (113), Expect = 1e-06
Identities = 29/150 (19%), Positives = 58/150 (38%), Gaps = 30/150 (20%)
Query: 17 LDLSFQQIQSLDK-----VAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGL 71
L S + L + ++ N+ L + PP+L L +S+N++ + L
Sbjct: 96 LVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLL------EYLGVSNNQLEKLPEL 149
Query: 72 DSLVHRTILD---------PDLIG---WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI 119
+ I+D PDL +I N ++ + + N P L +Y N +
Sbjct: 150 QNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSL 207
Query: 120 EEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
++ + SL ++ N +E++ E
Sbjct: 208 KK-----LPDLPLSLESIVAGNNILEELPE 232
Score = 38.1 bits (89), Expect = 0.001
Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 28/122 (22%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILD---------PDLIG---WIDLSFNNIKNVDKNMF 103
S+ +N + + L +L T + PDL +++ N + ++ +
Sbjct: 218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLP-ELP 276
Query: 104 TNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVT 163
+ L + + + E +L L+ N I + + P L
Sbjct: 277 QSLTFLDVSENIFSGLSELPP--------NLYYLNASSNEIRSL-------CDLPPSLEE 321
Query: 164 LD 165
L+
Sbjct: 322 LN 323
Score = 37.3 bits (87), Expect = 0.003
Identities = 19/129 (14%), Positives = 45/129 (34%), Gaps = 42/129 (32%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI---DLSFNNIKNVDK------------ 100
L L++ +S + P+L + S N++ + +
Sbjct: 74 HELELNNLGLSSL-------------PELPPHLESLVASCNSLTELPELPQSLKSLLVDN 120
Query: 101 ---NMFTNFP-NLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVST 156
++ P L+ L + NQ+E + L+ + L+ + + N ++K+
Sbjct: 121 NNLKALSDLPPLLEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSLKKL-------PD 170
Query: 157 MIPQLVTLD 165
+ P L +
Sbjct: 171 LPPSLEFIA 179
Score = 35.0 bits (81), Expect = 0.014
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 21/93 (22%)
Query: 56 RSLWLSHNKI-SLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYL 114
L S N+I SL SL +++S N + + P L+ L
Sbjct: 300 YYLNASSNEIRSLCDLPPSLEE-----------LNVSNNKLIELPALP----PRLERLIA 344
Query: 115 HKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
N + E V +L+ L + NP+ +
Sbjct: 345 SFNHLAE-----VPELPQNLKQLHVEYNPLREF 372
Score = 33.0 bits (76), Expect = 0.053
Identities = 10/98 (10%), Positives = 33/98 (33%), Gaps = 14/98 (14%)
Query: 56 RSLWLSHNKIS----LVYGLDSLVHRTILD--PDLIG---WIDLSFNNIKNVDKNMFTNF 106
+ L + +N + + ++ L + L P+L + + N ++
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE--- 416
Query: 107 PNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
+++ L ++ ++ + F + L +
Sbjct: 417 -SVEDLRMNSERVVD-PYEFAHETTDKLEDDVFEHHHH 452
Score = 31.9 bits (73), Expect = 0.14
Identities = 13/110 (11%), Positives = 34/110 (30%), Gaps = 26/110 (23%)
Query: 17 LDLSFQQIQSLDKV--AVQKLKPNVH--RLGESPPMLVGRYDTRSLWLSHNKISLVYGLD 72
L + + ++ + +V+ L+ N H + E P L + L + N +
Sbjct: 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNL------KQLHVETNPLREF---- 411
Query: 73 SLVHRTILDPDLIGWI---DLSFNNIKNVDKNMFTNFPNLKILYLHKNQI 119
PD+ + ++ + + + L+ +
Sbjct: 412 ---------PDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452
Score = 26.5 bits (59), Expect = 8.2
Identities = 10/89 (11%), Positives = 19/89 (21%), Gaps = 20/89 (22%)
Query: 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR------------RVNSLRT 136
+N+ + N + Y ++ E
Sbjct: 17 LRHSSNLTEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75
Query: 137 LSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
L L + + E P L +L
Sbjct: 76 LELNNLGLSSLPEL-------PPHLESLV 97
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 45.7 bits (109), Expect = 1e-06
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 19/96 (19%)
Query: 54 DTRSLWLSHNKI-SLVYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
D + LWL++N+I L G+ D LV+ L + N + + +F L
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLY--------FNSNKLTAIPTGVFDKLTQLTQ 85
Query: 112 LYLHKNQIEEYLSV----FVLRRVNSLRTLSLYGNP 143
L L+ N ++ S+ F + SL + LY NP
Sbjct: 86 LDLNDNHLK---SIPRGAF--DNLKSLTHIYLYNNP 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 45.7 bits (109), Expect = 2e-06
Identities = 7/88 (7%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
+ L +++ + + L + L + ++ + + +L +L +
Sbjct: 69 KDLTINNIHATNYNPISGLSNLERLR--------IMGKDVTSDKIPNLSGLTSLTLLDIS 120
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNP 143
+ ++ + + + + ++ L N
Sbjct: 121 HSAHDD-SILTKINTLPKVNSIDLSYNG 147
Score = 44.9 bits (107), Expect = 3e-06
Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
+ L++ ++ + G++ + L ++ + N N + NL+ L +
Sbjct: 47 TYITLANINVTDLTGIEYAHNIKDL--------TINNIHATNY--NPISGLSNLERLRIM 96
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIE 145
+ + L + SL L + + +
Sbjct: 97 GKDVTS-DKIPNLSGLTSLTLLDISHSAHD 125
Score = 44.2 bits (105), Expect = 6e-06
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 12/94 (12%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN-IKNVDKNMFTNFPNLKILYL 114
L +SH+ L + ++ IDLS+N I ++ P LK L +
Sbjct: 115 TLLDISHSAHDDS-ILTKINTLPKVN-----SIDLSYNGAITDIMP--LKTLPELKSLNI 166
Query: 115 HKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR 148
+ + + L L + I +
Sbjct: 167 QFDGVH---DYRGIEDFPKLNQLYAFSQTIGGKK 197
Score = 29.9 bits (68), Expect = 0.43
Identities = 5/72 (6%), Positives = 18/72 (25%), Gaps = 8/72 (11%)
Query: 78 TILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIE--EYLSVFVLRRVNSLR 135
I D +++ + +L + L + + +++
Sbjct: 16 NIPDSTFKAYLNGLLGQSSTANIT-EAQMNSLTYITLANINVTDLTGIEYAH-----NIK 69
Query: 136 TLSLYGNPIEKI 147
L++
Sbjct: 70 DLTINNIHATNY 81
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 45.8 bits (109), Expect = 3e-06
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 15/92 (16%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
SL ++ I+ + G++ L T L + NNI +D + NL L
Sbjct: 45 TSLDCHNSSITDMTGIEKLTGLTKL--------ICTSNNITTLD---LSQNTNLTYLACD 93
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
N++ + + L L+ N + K+
Sbjct: 94 SNKLTN----LDVTPLTKLTYLNCDTNKLTKL 121
Score = 43.9 bits (104), Expect = 1e-05
Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 18/133 (13%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGE--SPPMLVGRYDTRSLWLSHNKISLVYGLDSL 74
L+ + + +D +L L + + + + +L S NKI+ +
Sbjct: 132 LNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL------ 185
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
+ L+ ++ NNI +D L L N++ E + + L
Sbjct: 186 ---DVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTE----IDVTPLTQL 235
Query: 135 RTLSLYGNPIEKI 147
NP+ ++
Sbjct: 236 TYFDCSVNPLTEL 248
Score = 38.5 bits (90), Expect = 0.001
Identities = 11/94 (11%), Positives = 26/94 (27%), Gaps = 19/94 (20%)
Query: 56 RSLWLSHNKISL--VYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
L I+ + LV ++ L+ + +D ++ LK L
Sbjct: 300 YLLDCQAAGITELDLSQNPKLV-----------YLYLNNTELTELD---VSHNTKLKSLS 345
Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
I+ + ++ +L +
Sbjct: 346 CVNAHIQ---DFSSVGKIPALNNNFEAEGQTITM 376
Score = 38.1 bits (89), Expect = 0.001
Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 15/92 (16%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
L + N ++ I +L + K + K T L L
Sbjct: 130 TYLNCARNTLT-----------EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCS 178
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
N+I E + + L L+ N I K+
Sbjct: 179 FNKITE----LDVSQNKLLNRLNCDTNNITKL 206
Score = 37.7 bits (88), Expect = 0.002
Identities = 21/131 (16%), Positives = 35/131 (26%), Gaps = 35/131 (26%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
D S + LD + KL +L + + L H
Sbjct: 238 FDCSVNPLTELDVSTLSKLT--------------------TLHCIQTDLLEI----DLTH 273
Query: 77 RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRT 136
T L I + + + T+ L +L I E L + L
Sbjct: 274 NTQL-------IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITE----LDLSQNPKLVY 322
Query: 137 LSLYGNPIEKI 147
L L + ++
Sbjct: 323 LYLNNTELTEL 333
Score = 37.0 bits (86), Expect = 0.003
Identities = 17/112 (15%), Positives = 30/112 (26%), Gaps = 34/112 (30%)
Query: 56 RSLWLSHNKIS--LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
L S NK++ V L L + D S N + +D + L L+
Sbjct: 215 TFLDCSSNKLTEIDVTPLTQLTY-----------FDCSVNPLTELD---VSTLSKLTTLH 260
Query: 114 LHKNQIEE------------------YLSVFVLRRVNSLRTLSLYGNPIEKI 147
+ + E + + L L I ++
Sbjct: 261 CIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL 312
Score = 34.7 bits (80), Expect = 0.017
Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 4/82 (4%)
Query: 66 SLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSV 125
+L G + D + + +F D L L H + I + +
Sbjct: 2 TLKAGQTQSFNDWFPDDNFASEVAAAFEMQAT-DTISEEQLATLTSLDCHNSSITDMTGI 60
Query: 126 FVLRRVNSLRTLSLYGNPIEKI 147
L L L N I +
Sbjct: 61 EKLT---GLTKLICTSNNITTL 79
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 43.8 bits (104), Expect = 6e-06
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 37/138 (26%)
Query: 15 IP-----LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLV 68
IP L+L ++QSL KL +L + L LS N+I SL
Sbjct: 26 IPSSATRLELESNKLQSLPHGVFDKLT----QLTK-------------LSLSQNQIQSLP 68
Query: 69 YGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSV-- 125
G+ D L TIL L N ++++ +F LK L L NQ++ SV
Sbjct: 69 DGVFDKLTKLTILY--------LHENKLQSLPNGVFDKLTQLKELALDTNQLK---SVPD 117
Query: 126 FVLRRVNSLRTLSLYGNP 143
+ R+ SL+ + L+ NP
Sbjct: 118 GIFDRLTSLQKIWLHTNP 135
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 44.5 bits (105), Expect = 7e-06
Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 4/156 (2%)
Query: 14 KIPLDLSFQQIQSLDKVAVQKLK-PNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLD 72
+IP + F ++ L +Q+L N+ G +PP L+ L+ +S
Sbjct: 79 RIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDA 138
Query: 73 SLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI---EEYLSVFVLR 129
L + + ++ + N FP L L L N +S
Sbjct: 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198
Query: 130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
+ +L+ L+L +E + ++ QL LD
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234
Score = 42.2 bits (99), Expect = 4e-05
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
+ L LSHN + G S + L+ ++LSF +K V K + L +L L
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLN-----SLNLSFTGLKQVPKGLP---AKLSVLDLS 282
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
N+++ S L + LSL GNP
Sbjct: 283 YNRLDRNPSPDELP---QVGNLSLKGNPF 308
Score = 39.9 bits (93), Expect = 2e-04
Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 6/136 (4%)
Query: 16 PLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDT-RSLWLSHNKISLVYGLDSL 74
D ++Q K ++ L V + +L LS N GL S
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKN---MFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
+ + + L ++ + L+ L L N + +
Sbjct: 195 LCPLKFP--TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252
Query: 132 NSLRTLSLYGNPIEKI 147
+ L +L+L ++++
Sbjct: 253 SQLNSLNLSFTGLKQV 268
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 43.5 bits (103), Expect = 1e-05
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 28/141 (19%)
Query: 17 LDLSFQQIQSLDKVAVQKLKP------NVHRLGESPPMLVGRYD----TRSLWLSHNKI- 65
LDL ++SL +L ++L P G ++ L LS N++
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN---GVFNKLTSLTYLNLSTNQLQ 89
Query: 66 SLVYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLS 124
SL G+ D L L L+ N ++++ +F LK L L++NQ++ S
Sbjct: 90 SLPNGVFDKLTQLKELA--------LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK---S 138
Query: 125 V--FVLRRVNSLRTLSLYGNP 143
V V R+ SL+ + L+ NP
Sbjct: 139 VPDGVFDRLTSLQYIWLHDNP 159
Score = 40.0 bits (94), Expect = 2e-04
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
T L L N + SL + + + + L N ++++ +F +L L
Sbjct: 29 QTTYLDLETNSLK------SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82
Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
L NQ++ L V ++ L+ L+L N
Sbjct: 83 LSTNQLQS-LPNGVFDKLTQLKELALNTN 110
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 42.3 bits (100), Expect = 3e-05
Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 26/148 (17%)
Query: 17 LDLSFQQIQSL----DKVAVQKLKPNVHRLGESP--PMLVGRYDTRSLWLSHNKISLVYG 70
+L + + + ++ ++ N + L + R L L NK+ +
Sbjct: 24 ANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLP---NVRYLALGGNKLHDISA 80
Query: 71 LDSLVHRTILD----------------PDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYL 114
L L + T L + + L N ++++ +F NL L L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 115 HKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
NQ++ L V ++ +L L L N
Sbjct: 141 AHNQLQS-LPKGVFDKLTNLTELDLSYN 167
Score = 42.3 bits (100), Expect = 4e-05
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 40/147 (27%)
Query: 17 LDLSFQQIQSLDKVAVQKLKP------NVHRLGESPPMLVGRYD----TRSLWLSHNKI- 65
L L+ Q+QSL KL ++L P G +D L L+HN++
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD---GVFDKLTNLTYLNLAHNQLQ 146
Query: 66 SLVYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLS 124
SL G+ D L + T LD LS+N ++++ + +F LK L L++NQ
Sbjct: 147 SLPKGVFDKLTNLTELD--------LSYNQLQSLPEGVFDKLTQLKDLRLYQNQ------ 192
Query: 125 VFVLRRV--------NSLRTLSLYGNP 143
L+ V SL+ + L+ NP
Sbjct: 193 ---LKSVPDGVFDRLTSLQYIWLHDNP 216
Score = 40.4 bits (95), Expect = 2e-04
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 22/136 (16%)
Query: 17 LDLSFQQIQSL---DK-VAVQKLKPNVHRLGESPPMLVGRYD----TRSLWLSHNKI-SL 67
L L ++ + + + L ++L P G +D + L L N++ SL
Sbjct: 68 LALGGNKLHDISALKELTNLTYLILTGNQLQSLPN---GVFDKLTNLKELVLVENQLQSL 124
Query: 68 VYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVF 126
G+ D L + T L+ L+ N ++++ K +F NL L L NQ++ L
Sbjct: 125 PDGVFDKLTNLTYLN--------LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEG 175
Query: 127 VLRRVNSLRTLSLYGN 142
V ++ L+ L LY N
Sbjct: 176 VFDKLTQLKDLRLYQN 191
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 42.7 bits (100), Expect = 4e-05
Identities = 26/129 (20%), Positives = 41/129 (31%), Gaps = 44/129 (34%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIG---WIDLSFNNIK------------NVDK 100
L ++ N L SL P+L ++D N + +VD
Sbjct: 83 TVLEITQNA------LISL-------PELPASLEYLDACDNRLSTLPELPASLKHLDVDN 129
Query: 101 NMFTNFP----NLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVST 156
N T P L+ + NQ+ + SL LS+ N + + E
Sbjct: 130 NQLTMLPELPALLEYINADNNQLTM-----LPELPTSLEVLSVRNNQLTFLPE------- 177
Query: 157 MIPQLVTLD 165
+ L LD
Sbjct: 178 LPESLEALD 186
Score = 38.4 bits (89), Expect = 0.001
Identities = 16/125 (12%), Positives = 42/125 (33%), Gaps = 8/125 (6%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
+L +S N + L ++ R + + N I ++ +N+ + + L
Sbjct: 183 EALDVSTNLLE---SLPAVPVRNHHSEETEIFFRCRENRITHIPENIL-SLDPTCTIILE 238
Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ 175
N LS + ++ Y P +T+ L + + +++
Sbjct: 239 DNP----LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQS 294
Query: 176 ETNAL 180
+ + +
Sbjct: 295 DVSQI 299
Score = 36.1 bits (83), Expect = 0.006
Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 62/174 (35%)
Query: 17 LDLSFQQIQSLDKV--AVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSL 74
L+++ + SL ++ +++ L +RL P + + L + +N+++++
Sbjct: 85 LEITQNALISLPELPASLEYLDACDNRLSTLPELPASL---KHLDVDNNQLTML------ 135
Query: 75 VHRTILDPDLIG---WIDLSFNNIK------------NVDKNMFTNFP----NLKILYLH 115
P+L +I+ N + +V N T P +L+ L +
Sbjct: 136 -------PELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVS 188
Query: 116 KNQIE-------------EYLSVFVLR------------RVNSLRTLSLYGNPI 144
N +E E F R ++ T+ L NP+
Sbjct: 189 TNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242
Score = 34.6 bits (79), Expect = 0.020
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 15/77 (19%)
Query: 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR 148
L+ N+ ++ N+ P + +L + +N + + SL L N + +
Sbjct: 65 QLNRLNLSSLPDNLP---PQITVLEITQNALIS-----LPELPASLEYLDACDNRLSTLP 116
Query: 149 EYRAVVSTMIPQLVTLD 165
E L LD
Sbjct: 117 EL-------PASLKHLD 126
Score = 32.3 bits (73), Expect = 0.10
Identities = 14/116 (12%), Positives = 30/116 (25%), Gaps = 18/116 (15%)
Query: 57 SLWLSHNKISLVYGLDSLVHRTILDPDLIG-WIDLSFNNIKNVDKNMFTNFP------NL 109
S+ L N + + D W + ++N +
Sbjct: 2 SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61
Query: 110 KILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
L L++ + L + + L + N + + + L LD
Sbjct: 62 SELQLNRLNLSS-LPDNLP---PQITVLEITQNALISL-------PELPASLEYLD 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 42.0 bits (99), Expect = 4e-05
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 54 DTRSLWLSHNKI-SLVYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
+ + L+L N+I L G+ DSL++ + L N + + +F + L +
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLK--------ELYLGSNQLGALPVGVFDSLTQLTV 92
Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
L L NQ+ L V R+ L+ L + N
Sbjct: 93 LDLGTNQLTV-LPSAVFDRLVHLKELFMCCN 122
Score = 38.5 bits (90), Expect = 6e-04
Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 49/151 (32%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL-DSL 74
L L QI L+ L + + L+L N++ +L G+ DSL
Sbjct: 45 LYLHDNQITKLEPGVFDSLI-----------------NLKELYLGSNQLGALPVGVFDSL 87
Query: 75 VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE------------- 121
T+LD L N + + +F +LK L++ N++ E
Sbjct: 88 TQLTVLD--------LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTH 139
Query: 122 -YLSVFVLRRV--------NSLRTLSLYGNP 143
L L+ + +SL L+GNP
Sbjct: 140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 39.3 bits (92), Expect = 4e-04
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 56 RSLWLSHNKIS------LVYGLDSLVHRTILDPDLIGWIDLSFNNI-----KNVDKNMFT 104
R L L+ +S +V L + + + L +N I + + +
Sbjct: 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQT------LRLQYNEIELDAVRTLKTVIDE 300
Query: 105 NFPNLKILYLHKNQIEE 121
P+L L L+ N+ E
Sbjct: 301 KMPDLLFLELNGNRFSE 317
Score = 38.5 bits (90), Expect = 0.001
Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 20/106 (18%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNI-------------KNVDKNM 102
++ LS N + L+ + + + L N + +
Sbjct: 97 HTVRLSDNAFGPT-AQEPLI-DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154
Query: 103 FTNFPNLKILYLHKNQIE----EYLSVFVLRRVNSLRTLSLYGNPI 144
N P L+ + +N++E + + + L T+ + N I
Sbjct: 155 AKNAPPLRSIICGRNRLENGSMKEWAK-TFQSHRLLHTVKMVQNGI 199
Score = 33.5 bits (77), Expect = 0.032
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 24/104 (23%)
Query: 56 RSLWLSHNKI------SLVYGLDSLVHRTILDPDLIGWIDLSFNNI-----KNVDKNMFT 104
RS+ N++ HR + + + N I +++
Sbjct: 162 RSIICGRNRLENGSMKEWAKTF--QSHRLLHT------VKMVQNGIRPEGIEHLLLEGLA 213
Query: 105 NFPNLKILYLHKNQIE----EYLSVFVLRRVNSLRTLSLYGNPI 144
LK+L L N L+ L+ +LR L L +
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALA-IALKSWPNLRELGLNDCLL 256
Score = 33.1 bits (76), Expect = 0.055
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 26/106 (24%)
Query: 56 RSLWLSHNKISLVYGLDSL-----VHRTILDPDLIGWIDLSFNNIKNVDK------NMFT 104
+ L L N + + G +L + + L+ + + + F+
Sbjct: 219 KVLDLQDNTFTHL-GSSALAIALKSWPNLR------ELGLNDCLLS--ARGAAAVVDAFS 269
Query: 105 NFPN--LKILYLHKNQIE----EYLSVFVLRRVNSLRTLSLYGNPI 144
N L+ L L N+IE L + ++ L L L GN
Sbjct: 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
Score = 32.8 bits (75), Expect = 0.063
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 24/105 (22%)
Query: 56 RSLWLSHNKIS-------LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD----KNMFT 104
++ + N I L+ GL +LD L N ++
Sbjct: 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD--------LQDNTFTHLGSSALAIALK 241
Query: 105 NFPNLKILYLHKNQIE----EYLSVFVLRRVN-SLRTLSLYGNPI 144
++PNL+ L L+ + + + N L+TL L N I
Sbjct: 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286
Score = 32.8 bits (75), Expect = 0.073
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 16/74 (21%)
Query: 88 IDLSFNNIKNVD----KNMFTNFPNLKILYLHKNQI------------EEYLSVFVLRRV 131
+ LS N + + L+ LYLH N + +E +
Sbjct: 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA 158
Query: 132 NSLRTLSLYGNPIE 145
LR++ N +E
Sbjct: 159 PPLRSIICGRNRLE 172
Score = 30.5 bits (69), Expect = 0.41
Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 23/106 (21%)
Query: 56 RSLWLSHNKIS------LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK-------NM 102
+ + LS N I L + S I + + D+ +K+
Sbjct: 35 KEIVLSGNTIGTEAARWLSENIASKKDLEIAE-----FSDIFTGRVKDEIPEALRLLLQA 89
Query: 103 FTNFPNLKILYLHKNQIE----EYLSVFVLRRVNSLRTLSLYGNPI 144
P L + L N E L F L + L L L+ N +
Sbjct: 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGL 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 39.1 bits (91), Expect = 6e-04
Identities = 18/129 (13%), Positives = 46/129 (35%), Gaps = 21/129 (16%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIG---WIDLSFNNIKNVDKNMFTNFPNLKIL 112
+ L +S N+++ + P L + + N + + +++ + + +
Sbjct: 244 KELMVSGNRLTSL-------------PMLPSGLLSLSVYRNQLTRLPESLI-HLSSETTV 289
Query: 113 YLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172
L N LS L+ + + + Y PI + A L + +++P+
Sbjct: 290 NLEGNP----LSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPA 345
Query: 173 EKQETNALN 181
+ E +
Sbjct: 346 REGEPAPAD 354
Score = 39.1 bits (91), Expect = 6e-04
Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 30/148 (20%)
Query: 17 LDLSFQQIQSLDK-----VAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYG 70
L++S Q+ SL + + + L P L LW+ N++ SL
Sbjct: 86 LEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGL------CKLWIFGNQLTSLPVL 139
Query: 71 LDSLVHRTILD------PDLIG---WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE 121
L ++ D P L + N + ++ L+ L + NQ+
Sbjct: 140 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPML----PSGLQELSVSDNQLAS 195
Query: 122 YLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
L + L L Y N + +
Sbjct: 196 -LPTL----PSELYKLWAYNNRLTSLPA 218
Score = 34.9 bits (80), Expect = 0.013
Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 43/129 (33%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIG----WIDLSFNNIKNVDKNMFTNFPNLKI 111
L + + ++ + PD + + + NN+ ++ P L+
Sbjct: 43 AVLNVGESGLTTL-------------PDCLPAHITTLVIPDNNLTSLPAL----PPELRT 85
Query: 112 LYLHKNQIEE---------YLSVFVLRRVN------SLRTLSLYGNPIEKIREYRAVVST 156
L + NQ+ LS+F + L L ++GN + +
Sbjct: 86 LEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL-------PV 138
Query: 157 MIPQLVTLD 165
+ P L L
Sbjct: 139 LPPGLQELS 147
Score = 27.6 bits (61), Expect = 3.4
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 11/58 (18%)
Query: 108 NLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
+L + ++ + L + + TL + N + + P+L TL+
Sbjct: 41 GNAVLNVGESGLTT-LPDCLP---AHITTLVIPDNNLTSLPAL-------PPELRTLE 87
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 39.1 bits (92), Expect = 6e-04
Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 17/130 (13%)
Query: 42 LGESPPMLVGRYDTRSLWLSHNK----ISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKN 97
L+ SL+LS++ +S SL +DLS N++
Sbjct: 66 FSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTS-----------LDLSRNSLSG 114
Query: 98 V--DKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVS 155
+ LK L + N ++ V ++NSL L L N I V+S
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174
Query: 156 TMIPQLVTLD 165
+L L
Sbjct: 175 DGCGELKHLA 184
Score = 38.0 bits (89), Expect = 0.001
Identities = 27/110 (24%), Positives = 37/110 (33%), Gaps = 26/110 (23%)
Query: 56 RSLWLSHNKIS------LVYGLDSLVHRTILD----------PDLIG------WIDLSFN 93
+ L L+ NK + L D+L LD P G + LS N
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTG---LDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 94 NIK-NVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
N + + LK+L L N+ L + SL TL L N
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Score = 36.8 bits (86), Expect = 0.003
Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 37/113 (32%)
Query: 56 RSLWLSHNK----ISLVYGLDSLVHRTILDPDLIGWIDLSFNNIK--------------- 96
L +S N I + +L H +D+S N +
Sbjct: 203 EFLDVSSNNFSTGIPFLGDCSALQH-----------LDISGNKLSGDFSRAISTCTELKL 251
Query: 97 -NVDKNMFT------NFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
N+ N F +L+ L L +N+ + F+ ++L L L GN
Sbjct: 252 LNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304
Score = 35.3 bits (82), Expect = 0.012
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 23/96 (23%)
Query: 56 RSLWLSHNK------ISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKN---VDKNMFTNF 106
+ L +S N +S L+SL +DLS N+I V +
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEV-----------LDLSANSISGANVVGWVLSDGC 177
Query: 107 PNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
LK L + N+I + V +L L + N
Sbjct: 178 GELKHLAISGNKISGDVDVSRCV---NLEFLDVSSN 210
Score = 31.0 bits (71), Expect = 0.30
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 20/95 (21%)
Query: 56 RSLWLSHNKIS------LVYGLDSLVHRTILDPDLIGWIDLSFNNIK-NVDKNMF-TNFP 107
+ L LS N+ S L SL+ +DLS NN + N+
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLL-----------TLDLSSNNFSGPILPNLCQNPKN 394
Query: 108 NLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
L+ LYL N + L + L +L L N
Sbjct: 395 TLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFN 428
Score = 30.6 bits (70), Expect = 0.36
Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 21/110 (19%)
Query: 56 RSLWLSHNKIS----LVYGLDSLVHRTILD----------PDLIG------WIDLSFNNI 95
+L LS N S + L P + + LSFN +
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430
Query: 96 KNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIE 145
+ + L+ L L N +E + L V +L TL L N +
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLT 479
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 37.8 bits (88), Expect = 0.002
Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 11/99 (11%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD----KNMFTNFPNLKI 111
SL LS N + L L + P+ + ++L N + K + + +L+
Sbjct: 199 TSLDLSANLLGLK-SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257
Query: 112 LYLHKNQI----EEYLSVF--VLRRVNSLRTLSLYGNPI 144
+YL + + +E + + + G I
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296
Score = 35.5 bits (82), Expect = 0.008
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 28/107 (26%)
Query: 56 RSLWLSHNKIS------LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK------NMF 103
L L N S + + +I ++L N++ K +
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSN-LPASIT------SLNLRGNDLG--IKSSDELIQIL 162
Query: 104 TNFP-NLKILYLHKNQIE----EYLSVFVLRRVN-SLRTLSLYGNPI 144
P N+ L L N + L+ L + S+ +L L N +
Sbjct: 163 AAIPANVNSLNLRGNNLASKNCAELAK-FLASIPASVTSLDLSANLL 208
Score = 34.3 bits (79), Expect = 0.019
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 12/99 (12%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD-----KNMFTNFPNLK 110
SL LS N + D LV P + ++LS N + K + +
Sbjct: 54 TSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTIT 112
Query: 111 ILYLHKNQIE----EYLSVFVLRRVN-SLRTLSLYGNPI 144
+L L N + S+ +L+L GN +
Sbjct: 113 VLDLGWNDFSSKSSSEFKQ-AFSNLPASITSLNLRGNDL 150
Score = 34.3 bits (79), Expect = 0.019
Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 24/125 (19%)
Query: 56 RSLWLSHNKIS------LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMF-----T 104
SL L N ++ L L S + ++ +DLS N + +
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLAS-IPASVT------SLDLSANLLGLKSYAELAYIFSS 222
Query: 105 NFPNLKILYLHKNQIE----EYLSVFVLRRVNSLRTLSLYGNPIEKI-REYRAVVSTMIP 159
++ L L N + E L + + + L+T+ L + ++ + +E + P
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKL-LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP 281
Query: 160 QLVTL 164
+ +
Sbjct: 282 NIQKI 286
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 37.6 bits (88), Expect = 0.002
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 24/105 (22%)
Query: 56 RSLWLSHNKIS------LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD-----KNMFT 104
+L L ++ L + S L L N + +V +
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELA--------LGSNKLGDVGMAELCPGLLH 253
Query: 105 NFPNLKILYLHKNQIEE----YLSVFVLRRVNSLRTLSLYGNPIE 145
L+ L++ + I L VLR SL+ LSL GN +
Sbjct: 254 PSSRLRTLWIWECGITAKGCGDLC-RVLRAKESLKELSLAGNELG 297
Score = 37.6 bits (88), Expect = 0.002
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 24/104 (23%)
Query: 56 RSLWLSHNKIS------LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD-----KNMFT 104
L L + +S L L + L +S N+I + +
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELT--------VSNNDINEAGVRVLCQGLKD 196
Query: 105 NFPNLKILYLHKNQIEE----YLSVFVLRRVNSLRTLSLYGNPI 144
+ L+ L L + L ++ SLR L+L N +
Sbjct: 197 SPCQLEALKLESCGVTSDNCRDLC-GIVASKASLRELALGSNKL 239
Score = 35.7 bits (83), Expect = 0.008
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 24/105 (22%)
Query: 56 RSLWLSHNKIS------LVYGLDSLVHRTILDPDLIGWIDLSFNNI-----KNVDKNMFT 104
SLW+ + L L +S N + + + + +
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ--------ISNNRLEDAGVRELCQGLGQ 367
Query: 105 NFPNLKILYLHKNQIEE----YLSVFVLRRVNSLRTLSLYGNPIE 145
L++L+L + + L+ L +SLR L L N +
Sbjct: 368 PGSVLRVLWLADCDVSDSSCSSLA-ATLLANHSLRELDLSNNCLG 411
Score = 35.3 bits (82), Expect = 0.011
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDL-IGWIDLSFNNIKNVD----KNMFTNFPNLK 110
+ L L+ N++ G L T+L+P + + + + ++ L
Sbjct: 287 KELSLAGNELG-DEGARLLC-ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL 344
Query: 111 ILYLHKNQIE----EYLSVFVLRRVNS-LRTLSLYGNPI 144
L + N++E L L + S LR L L +
Sbjct: 345 ELQISNNRLEDAGVRELC-QGLGQPGSVLRVLWLADCDV 382
Score = 34.6 bits (80), Expect = 0.019
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 21/103 (20%)
Query: 56 RSLWLSHNKIS------LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD----KNMFTN 105
L L N++ ++ GL + I + L + +
Sbjct: 59 AELNLRSNELGDVGVHCVLQGLQT-PSCKIQ------KLSLQNCCLTGAGCGVLSSTLRT 111
Query: 106 FPNLKILYLHKNQIE----EYLSVFVLRRVNSLRTLSLYGNPI 144
P L+ L+L N + + L +L L L L +
Sbjct: 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154
Score = 33.8 bits (78), Expect = 0.035
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 23/104 (22%)
Query: 56 RSLWLSHNKIS------LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD----KNMFTN 105
L +S+N++ L GL + + L+ ++ +
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQ-PGSVLR------VLWLADCDVSDSSCSSLAATLLA 396
Query: 106 FPNLKILYLHKNQIEE----YLSVFVLRRVNS-LRTLSLYGNPI 144
+L+ L L N + + L +R+ L L LY
Sbjct: 397 NHSLRELDLSNNCLGDAGILQLV-ESVRQPGCLLEQLVLYDIYW 439
Score = 33.8 bits (78), Expect = 0.035
Identities = 20/142 (14%), Positives = 44/142 (30%), Gaps = 38/142 (26%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKIS------LVYG 70
LD+ +++ +L P + + + + L ++ +
Sbjct: 8 LDIQCEELSD---ARWAELLPLLQQC-------------QVVRLDDCGLTEARCKDISSA 51
Query: 71 LDSLVHRTILDPDLIGWIDLSFNNIKNVD-----KNMFTNFPNLKILYLHKNQI-EEYLS 124
L L+ L N + +V + + T ++ L L +
Sbjct: 52 LRVNPALAELN--------LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103
Query: 125 VF--VLRRVNSLRTLSLYGNPI 144
V LR + +L+ L L N +
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLL 125
Score = 30.7 bits (70), Expect = 0.37
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 22/97 (22%)
Query: 56 RSLWLSHNKIS------LVYGLDSLVHRTILDPDLIGWIDLSFNNI-----KNVDKNMFT 104
R LWL+ +S L L + LD LS N + + +++
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELD--------LSNNCLGDAGILQLVESVRQ 424
Query: 105 NFPNLKILYLHKNQIEEYLSVF---VLRRVNSLRTLS 138
L+ L L+ E + + + SLR +S
Sbjct: 425 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 35.9 bits (83), Expect = 0.002
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 104 TNFP-NLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNP 143
T FP + L L N + L +L + +LRT L NP
Sbjct: 27 TAFPVDTTELVLTGNNLTA-LPPGLLDALPALRTAHLGANP 66
Score = 34.4 bits (79), Expect = 0.007
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQ 118
+ L+ NN+ + + P L+ +L N
Sbjct: 35 ELVLTGNNLTALPPGLLDALPALRTAHLGANP 66
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 37.0 bits (86), Expect = 0.003
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 18/100 (18%)
Query: 56 RSLWLSHNKIS------LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD-KNMFTNFPN 108
R L L+ +++ + L R LD ++L+ + + + F
Sbjct: 75 RQLNLAGVRMTPVKCTVVAAVL--GSGRHALD-----EVNLASCQLDPAGLRTLLPVFLR 127
Query: 109 LKILYLHKNQIE----EYLSVFVLRRVNSLRTLSLYGNPI 144
+ L L N + + L +L + TL L NP+
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL 167
Score = 33.9 bits (78), Expect = 0.027
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 25/104 (24%)
Query: 56 RSLWLSHNKISLVYGLDSL-----VHRTILDPDLIGWIDLSFNNIKNVDK------NMFT 104
+L LS+N ++ G+ L + ++ + L + D+
Sbjct: 158 TTLRLSNNPLTAA-GVAVLMEGLAGNTSVT------HLSLLHTGLG--DEGLELLAAQLD 208
Query: 105 NFPNLKILYLHKNQIE----EYLSVFVLRRVNSLRTLSLYGNPI 144
L+ L + N L+ R SL L LY N +
Sbjct: 209 RNRQLQELNVAYNGAGDTAALALAR-AAREHPSLELLHLYFNEL 251
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 33.6 bits (78), Expect = 0.022
Identities = 10/95 (10%), Positives = 25/95 (26%), Gaps = 16/95 (16%)
Query: 56 RSLWLSHNKI-SLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYL 114
L + ++ L + L ++ L + + + P L
Sbjct: 30 SKLQEIYQELTRLKAAVGELPEKSKLQ--------EIYQELTRLKAA-VGELPEKSKLQE 80
Query: 115 HKNQIEEYL--SVFVLRRVNSLRTLSLYGNPIEKI 147
++ L +V L L + ++
Sbjct: 81 IYQELTR-LKAAVGELP---EKSKLQEIYQELTEL 111
Score = 32.8 bits (76), Expect = 0.032
Identities = 5/126 (3%), Positives = 19/126 (15%), Gaps = 55/126 (43%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIG------WIDLSFNNIK------------- 96
L + +++ + +G + + +
Sbjct: 53 SKLQEIYQELTRL-------------KAAVGELPEKSKLQEIYQELTRLKAAVGELPEKS 99
Query: 97 --NVDKNMFTNFP-------NLKILYLHKNQIEE------YLSVFVLRRVNSLRTLSLYG 141
T L ++ + L
Sbjct: 100 KLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELP--------DQSKQQQIY 151
Query: 142 NPIEKI 147
+ +
Sbjct: 152 QELTDL 157
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 33.4 bits (77), Expect = 0.043
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+L + F +L+ + + + E +++ L TL+L NP+ +
Sbjct: 87 ELRSVPLPQFPDQAF-RLSHLQHMTIDAAGLMELPDT--MQQFAGLETLTLARNPLRAL 142
Score = 30.3 bits (69), Expect = 0.45
Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 22/94 (23%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIG------WIDLSFNNIKNVDKNMFTNFPNL 109
+L L + PD + + + + F L
Sbjct: 84 VALELRSVPLPQF-------------PDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGL 129
Query: 110 KILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNP 143
+ L L +N + + + +N LR LS+ P
Sbjct: 130 ETLTLARNPLRALPA--SIASLNRLRELSIRACP 161
Score = 29.9 bits (68), Expect = 0.61
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 34/109 (31%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIG------WIDLSFNN--------IKNVDK- 100
+L L+ N + +L P I + + + + D
Sbjct: 130 ETLTLARNPLR------AL-------PASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 101 NMFTNFPNLKILYLHKNQIEEYL--SVFVLRRVNSLRTLSLYGNPIEKI 147
NL+ L L I L S+ L+ +L++L + +P+ +
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRS-LPASIANLQ---NLKSLKIRNSPLSAL 221
Score = 26.1 bits (58), Expect = 9.2
Identities = 6/45 (13%), Positives = 12/45 (26%)
Query: 103 FTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
N N +I ++ + L L P+ +
Sbjct: 52 QANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQF 96
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.050
Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 65/204 (31%)
Query: 17 LDLSF------QQ---IQSLDKVAVQKLKPNVHRLGE-SP-PMLVGRYDTRSLWLSH--- 62
+ + F + SL ++ N E P PML T+ +
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLEN----NEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 63 -NK---------ISLVYGLDSLVHRTILDP--DLIGWIDLSFNNIK---NVDKNMFTNFP 107
N ISLV G +LV + P L G ++L+ K +D++ F
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLV---VSGPPQSLYG-LNLTLRKAKAPSGLDQSR-IPFS 410
Query: 108 NLKILYLHKNQIEEYLSVFV------LRRVNSLRTLSLYGNPIE------KI-------- 147
K+ + + +L V L + L L N + +I
Sbjct: 411 ERKLKFSN-----RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 148 REYRAVVSTMIPQLVTLDSVFILP 171
+ R + ++ ++V D + LP
Sbjct: 466 SDLRVLSGSISERIV--DCIIRLP 487
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 32.6 bits (73), Expect = 0.074
Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 15/109 (13%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
L L + +P + P L + L + + V ++ +
Sbjct: 224 LVLYVGVEDYGFDGDMNVFRPLFS--KDRFPNL------KWLGIVDAEEQNV-VVEMFLE 274
Query: 77 RTILDPDLIGWIDLSFNNIKNVDKNMF----TNFPNLKILYLHKNQIEE 121
IL P L +D+S + + + +LK + + N + +
Sbjct: 275 SDIL-PQLE-TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.082
Identities = 25/228 (10%), Positives = 67/228 (29%), Gaps = 72/228 (31%)
Query: 1 MSEYYKTSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHR-----LG---ES---PPML 49
+ +K ++ ++ ++ + ++ L+P +R L S P +L
Sbjct: 343 TWDNWK-----------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPD----LIGWIDLSFNNIKNVDKNMFTN 105
+ +W K ++ ++ L ++++ I + ++
Sbjct: 392 LSL-----IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE---- 442
Query: 106 FPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY-------------RA 152
LH++ ++ Y N +T + +Y
Sbjct: 443 ------YALHRSIVDHY---------NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 153 VVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSYLLP------KYEK 194
T+ + LD F+ +K ++ +L Y+
Sbjct: 488 ERMTLFRMVF-LDFRFL--EQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Score = 27.9 bits (61), Expect = 3.3
Identities = 17/135 (12%), Positives = 47/135 (34%), Gaps = 31/135 (22%)
Query: 53 YDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKIL 112
++T + I V+ D+ V + +++++ K++ + + +
Sbjct: 9 FETGEHQYQYKDILSVF-EDAFVD------------NFDCKDVQDMPKSILSK-EEIDHI 54
Query: 113 YLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172
+ K+ + L +F TL + V + +++ ++ F++
Sbjct: 55 IMSKDAVSGTLRLFW--------TLLSKQEEM---------VQKFVEEVLRINYKFLMSP 97
Query: 173 EKQETNALNAEIRSY 187
K E + R Y
Sbjct: 98 IKTEQRQPSMMTRMY 112
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.27
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 173 EKQETNALNAEIRSYLLPKYEKLEAATFKRTAVSVE 208
EKQ L A ++ Y + A K T +E
Sbjct: 18 EKQALKKLQASLKLY-AD--DSAPALAIKAT---ME 47
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc
binding, metal binding protein; 3.00A {Saccharomyces
cerevisiae} PDB: 3vh2_A
Length = 598
Score = 29.4 bits (66), Expect = 0.94
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 14/108 (12%)
Query: 11 PEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYG 70
P FK LD SF Q + +LK +V +L + L D ++ S +++ L
Sbjct: 14 PAFKSFLDTSFFQ-------ELSRLKLDVLKLDSTCQPLTVNLDLHNIPKSADQVPLFLT 66
Query: 71 LDSLVHRTILDPDLI---GWIDLSFNNI---KNVDKNMFTNFPNLKIL 112
S + + G I +FN + KN+DK +F + L+
Sbjct: 67 NRSFEKHNNKRTNEVPLQGSI-FNFNVLDEFKNLDKQLFLHQRALECW 113
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 28.3 bits (64), Expect = 1.8
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 40/93 (43%)
Query: 55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIG-----WIDLSFNNIK------------- 96
S+ +S N+++ G I P ++DLS N ++
Sbjct: 176 FTSMTISRNRLT---G-------KI--PPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 97 ---NVDKNMFT-------NFPNLKILYLHKNQI 119
++ KN NL L L N+I
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256
Score = 27.9 bits (63), Expect = 2.2
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 34/78 (43%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIG------WIDLSFNNIKNVDKNMFT----- 104
L+++H +S G I PD + +D S+N +
Sbjct: 104 HYLYITHTNVS---G-------AI--PDFLSQIKTLVTLDFSYNA--------LSGTLPP 143
Query: 105 ---NFPNLKILYLHKNQI 119
+ PNL + N+I
Sbjct: 144 SISSLPNLVGITFDGNRI 161
Score = 26.0 bits (58), Expect = 9.3
Identities = 15/117 (12%), Positives = 28/117 (23%), Gaps = 25/117 (21%)
Query: 47 PMLVGRYDTRSLWLSHNKISLVYG-----LDSLVHRTILD----------PDL-----IG 86
P + + LS N + G S + + + +
Sbjct: 191 PPTFANLNLAFVDLSRNMLE---GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNP 143
+DL N I T L L + N + + + + N
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG--EIPQGGNLQRFDVSAYANNK 302
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 28.2 bits (64), Expect = 2.3
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 14 KIPLDLSFQQIQSLDKVAVQKLK 36
IP + ++ + SL +KL
Sbjct: 589 HIPDNFNYDSLNSLSSEGREKLL 611
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 28.2 bits (64), Expect = 2.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 14 KIPLDLSFQQIQSLDKVAVQKLK 36
KIP D+ + +I L K A +KLK
Sbjct: 583 KIPPDIDYDKIPGLTKEAREKLK 605
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA;
tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 28.2 bits (64), Expect = 2.4
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 14 KIPLDLSFQQIQSLDKVAVQKLK 36
+P L ++Q+ L + KL
Sbjct: 591 LLPATLDYRQVSGLSNEVIAKLN 613
>3b21_A ORF169B, OSPI; bacterial protein, effector, type 3 secretion SYST
unknown function; 2.01A {Shigella flexneri}
Length = 220
Score = 27.8 bits (61), Expect = 2.5
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 117 NQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEK 174
N+I EY++ F R + + + + +P E ++R ++ I Q + SV ++ E+
Sbjct: 93 NEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQ 150
>2htd_A Predicted flavin-nucleotide-binding protein from family
structurally related to pyridoxine...; putative
pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A
{Lactobacillus delbrueckii subsp}
Length = 140
Score = 27.1 bits (60), Expect = 2.7
Identities = 5/43 (11%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 79 ILDPDLIGWIDLSFNN-IKNVDKN-----MFTNFPNLKILYLH 115
+LDP + +++ + +N+ + + + P+ + +
Sbjct: 62 VLDPSHLQYLEKTKGEAYENIKRGSKVALVAADVPSHTAVRVL 104
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 27.7 bits (61), Expect = 4.0
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 111 ILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI------EKIREYRAVVSTMIPQ 160
+LYL++N +++Y+ ++V ++VN R + G + + I+ VV
Sbjct: 788 VLYLYRNNLQKYIEIYV-QKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFST 842
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 27.4 bits (61), Expect = 4.5
Identities = 5/44 (11%), Positives = 13/44 (29%)
Query: 152 AVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSYLLPKYEKL 195
V + +L+ + + + A + L +K
Sbjct: 626 MPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQ 669
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 26.7 bits (59), Expect = 4.5
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHK-NQIE----EYLSVFVLRRVNSLRTLSLYG 141
ID + + I ++ + ++ + L K + IE E LS + S+ + +
Sbjct: 65 AIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQ-KSMLEMEIIS 123
Query: 142 NP 143
Sbjct: 124 CG 125
>3t7h_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, ligase;
1.60A {Saccharomyces cerevisiae} PDB: 3t7f_A 3t7g_A
3ruj_A
Length = 291
Score = 27.0 bits (59), Expect = 5.0
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 14/118 (11%)
Query: 1 MSEYYKTSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWL 60
MS S P FK LD SF Q + +LK +V +L + L D ++
Sbjct: 3 MSSERVLSYAPAFKSFLDTSFFQ-------ELSRLKLDVLKLDSTCQPLTVNLDLHNIPK 55
Query: 61 SHNKISLVYGLDSLVHRTILDPDLI---GWIDLSFNNI---KNVDKNMFTNFPNLKIL 112
S +++ L S + + G I +FN + KN+DK +F + L+
Sbjct: 56 SADQVPLFLTNRSFEKHNNKRTNEVPLQGSI-FNFNVLDEFKNLDKQLFLHQRALECW 112
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 26.9 bits (59), Expect = 5.3
Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 142 NPIEKIREYRAVVSTMIPQLVTLDSVFIL-PSEKQETNALNAEIRSYLLPKYEKLEA 197
+R++ +++ L L ++ + K + LN+ IR + +
Sbjct: 230 TGDTALRDFMVNYFSIVKSLDDLFENRVMAFTNKS-VDKLNSIIRKKIFETDKDFIV 285
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 26.7 bits (59), Expect = 6.3
Identities = 6/48 (12%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 148 REYRAVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSYLLPKYEKL 195
E V + +L+ + + + A + L +K
Sbjct: 140 TEI-MPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQ 186
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 26.7 bits (59), Expect = 6.4
Identities = 4/48 (8%), Positives = 13/48 (27%), Gaps = 1/48 (2%)
Query: 148 REYRAVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSYLLPKYEKL 195
+ + L + + + + L + Y P ++
Sbjct: 691 TSS-PALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKPVIDRQ 737
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.383
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,106,842
Number of extensions: 176139
Number of successful extensions: 2215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 753
Number of HSP's successfully gapped: 447
Length of query: 210
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 121
Effective length of database: 4,216,824
Effective search space: 510235704
Effective search space used: 510235704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)