RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4162
(210 letters)
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 55.1 bits (132), Expect = 9e-11
Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 13/124 (10%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILD----------PDLIGWIDLSFNNIKNVDKNM--- 102
R L L+H ++++ L+ L+ T LD P L L +
Sbjct: 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60
Query: 103 FTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLV 162
N P L+ L L N++++ ++ L L L+L GN + + + ++ M+P +
Sbjct: 61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120
Query: 163 TLDS 166
++ +
Sbjct: 121 SILT 124
Score = 29.7 bits (66), Expect = 0.13
Identities = 15/103 (14%), Positives = 39/103 (37%), Gaps = 12/103 (11%)
Query: 17 LDLSFQQIQ----SLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLD 72
LDLS +++ +L + ++ E+ + + L L +N++ +
Sbjct: 25 LDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQ 84
Query: 73 SLVHRTILDPDLIGWIDLSFNNIKNVD---KNMFTNFPNLKIL 112
LV L ++L N++ + + + P++ +
Sbjct: 85 PLVSCPRLV-----LLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 43.7 bits (102), Expect = 2e-06
Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 18/164 (10%)
Query: 18 DLSFQQIQSLDKVAVQKLKPNVHRLGES----PPMLVGRYDTRSLWLSHNKISLVYGLDS 73
+L +Q++ L + ++ + L P LV + L + + + ++
Sbjct: 3 ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEE 62
Query: 74 LVHRTILDPDLIGWIDLSFNNIKNVD--KNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
+ + ++LS N + +D ++ PNLKIL L N+++ +
Sbjct: 63 NIPE-------LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKG 114
Query: 132 NSLRTLSLYGNPIEKIRE----YRAVVSTMIPQLVTLDSVFILP 171
L L L GN + Y + + P+L+ LD + P
Sbjct: 115 LKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELPP 158
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 42.0 bits (97), Expect = 1e-05
Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 25/199 (12%)
Query: 1 MSEYYKTSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWL 60
M++ T+I +I + +KV + + P + ++ + L + L L
Sbjct: 1 MAKA--TTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLK---ACKHLAL 55
Query: 61 SHNKISLVYGLDSLVHRTILDPDLIGWI-------------DLSFNNIKNVDKNMFTNFP 107
S N I + L + + IL +L + + +
Sbjct: 56 STNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLV 115
Query: 108 NLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI-------REYRAVVSTMIPQ 160
NL++LY+ N+I + + L ++ L L L GNP+ EYR V +P
Sbjct: 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN 175
Query: 161 LVTLDSVFILPSEKQETNA 179
L LD + + E+++ N
Sbjct: 176 LKKLDGMPVDVDEREQANV 194
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 41.9 bits (97), Expect = 2e-05
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 82 PDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYG 141
P +DL N I + F N NL L L N+I +S + L L L
Sbjct: 30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSK 88
Query: 142 NPIEKIRE 149
N ++++ E
Sbjct: 89 NQLKELPE 96
Score = 38.1 bits (87), Expect = 4e-04
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
DT L L +NKI+ + + + + L N I + F L+ LY
Sbjct: 32 DTALLDLQNNKIT------EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 85
Query: 114 LHKNQIEE 121
L KNQ++E
Sbjct: 86 LSKNQLKE 93
Score = 34.2 bits (77), Expect = 0.007
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 87 WIDLSFNNIKNVDKNMF------TNFPNLKILYLHKNQIEEY-LSVFVLRRVNSLRTLSL 139
+ L NNI + N F T + + L N ++ + + R V + L
Sbjct: 246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
Score = 33.9 bits (76), Expect = 0.009
Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 16/137 (11%)
Query: 18 DLSFQQIQSLDKVAVQKLK----PNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDS 73
++ I ++ + L L G + L LS N I +
Sbjct: 156 RIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI------SA 209
Query: 74 LVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE-----YLSVFVL 128
+ + ++ + + + L+ N + V + + ++++YLH N I +
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYN 268
Query: 129 RRVNSLRTLSLYGNPIE 145
+ S +SL+ NP++
Sbjct: 269 TKKASYSGVSLFSNPVQ 285
Score = 27.7 bits (60), Expect = 0.97
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 40 HRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIK--N 97
++L + P L + ++L +N IS + D + L N ++
Sbjct: 229 NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288
Query: 98 VDKNMFTNFPNLKILYL 114
+ + F + L
Sbjct: 289 IQPSTFRCVYVRAAVQL 305
Score = 27.7 bits (60), Expect = 1.0
Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 3/106 (2%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
L LS Q++ L + + L+ E + ++ + + + + +
Sbjct: 84 LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 143
Query: 77 RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEY 122
+ +I ++ NI + + + P+L L+L N+I +
Sbjct: 144 GAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKV 186
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 41.1 bits (95), Expect = 2e-05
Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 26/164 (15%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
LDL +I + + ++ S N+I + G L
Sbjct: 23 LDLRGYKIPVI------------------ENLGATLDQFDAIDFSDNEIRKLDGFPLLRR 64
Query: 77 RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRT 136
+ + ++ N I + + + P+L L L N + E + L + SL
Sbjct: 65 --------LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 116
Query: 137 LSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNAL 180
L + NP+ + YR V +PQ+ LD + E+QE +
Sbjct: 117 LCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKM 160
Score = 33.8 bits (76), Expect = 0.007
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 4/82 (4%)
Query: 90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
L+ I+ + +TN + L L +I ++ + N I K+
Sbjct: 3 LTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLGATLD--QFDAIDFSDNEIRKLDG 58
Query: 150 YRAVVSTMIPQLVTLDSVFILP 171
+ + + I
Sbjct: 59 FPLLRRLKTLLVNNNRICRIGE 80
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 41.3 bits (95), Expect = 4e-05
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146
+++S N + + P L+ L N + E V +L+ L + NP+ +
Sbjct: 288 ELNVSNNKLIELPAL----PPRLERLIASFNHLAE-----VPELPQNLKQLHVEYNPLRE 338
Query: 147 I 147
Sbjct: 339 F 339
Score = 37.5 bits (85), Expect = 7e-04
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 12/79 (15%)
Query: 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146
N N +++ P+L+ L + N++ E ++ L L N + +
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP-----PRLERLIASFNHLAE 318
Query: 147 IREYRAVVSTMIPQLVTLD 165
+ E + L L
Sbjct: 319 VPE-------LPQNLKQLH 330
Score = 36.0 bits (81), Expect = 0.002
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 21/85 (24%)
Query: 56 RSLWLSHNKI-SLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYL 114
L +S+NK+ L L + SFN++ V + NLK L++
Sbjct: 287 EELNVSNNKLIELPALPPRLER-----------LIASFNHLAEVPELP----QNLKQLHV 331
Query: 115 HKNQIEEYLSVFVLRRVNSLRTLSL 139
N + E+ + S+ L +
Sbjct: 332 EYNPLREFPDIP-----ESVEDLRM 351
Score = 26.3 bits (56), Expect = 2.8
Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 21/106 (19%)
Query: 17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
L+L+ + SL E PP L SL S N ++ + L +
Sbjct: 43 LELNNLGLSSLP---------------ELPPHL------ESLVASCNSLTELPELPQSLK 81
Query: 77 RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEY 122
++D + + + ++ + + ++ +I +
Sbjct: 82 SLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDV 127
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 40.0 bits (92), Expect = 1e-04
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146
++ L FNNI ++ ++ L+ L+ N++ V L + ++ LS N I
Sbjct: 311 YLTLYFNNISDISP--VSSLTKLQRLFFANNKVS---DVSSLANLTNINWLSAGHNQISD 365
Query: 147 I 147
+
Sbjct: 366 L 366
Score = 38.1 bits (87), Expect = 5e-04
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
+ L+ ++NK+S V L +L + I W+ N I ++ N + L L+
Sbjct: 332 QRLFFANNKVSDVSSLANLTN--------INWLSAGHNQISDLTP--LANLTRITQLGLN 381
Query: 116 KN 117
Sbjct: 382 DQ 383
Score = 33.1 bits (74), Expect = 0.023
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 10/77 (12%)
Query: 58 LWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKN 117
L ++ L T L IK++D NL + N
Sbjct: 27 TVLGKTNVTDTVSQTDLDQVTTLQ--------ADRLGIKSIDG--VEYLNNLTQINFSNN 76
Query: 118 QIEEYLSVFVLRRVNSL 134
Q+ + + L ++ +
Sbjct: 77 QLTDITPLKNLTKLVDI 93
Score = 30.4 bits (67), Expect = 0.13
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
D+ +++ D L + D T+ + L + I+ S+ + +
Sbjct: 9 DTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK---SIDGVEYL 65
Query: 132 NSLRTLSLYGNPIEKI 147
N+L ++ N + I
Sbjct: 66 NNLTQINFSNNQLTDI 81
Score = 30.0 bits (66), Expect = 0.21
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
+L I + G++ L + T + + S N + ++ N L + ++
Sbjct: 47 TTLQADRLGIKSIDGVEYLNNLTQI--------NFSNNQLTDITP--LKNLTKLVDILMN 96
Query: 116 KNQ 118
NQ
Sbjct: 97 NNQ 99
Score = 28.8 bits (63), Expect = 0.53
Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 14/119 (11%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILD---------PDLIGWIDLSFNNIKNVDKNMFTNF 106
L L+ N++ + L SL + T LD L G L+ + + +
Sbjct: 222 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL 281
Query: 107 PNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
L L + + + + + +L L+LY N I I + + +L L
Sbjct: 282 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS-----LTKLQRLF 335
Score = 27.3 bits (59), Expect = 1.5
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146
+ + N I ++ NL L L+ NQ+++ + L + +L L L N I
Sbjct: 201 SLIATNNQISDITPLGI--LTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISN 255
Query: 147 I 147
+
Sbjct: 256 L 256
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 39.7 bits (91), Expect = 1e-04
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 2/57 (3%)
Query: 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNP 143
+DL N I T L L + N + + + + N
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG--EIPQGGNLQRFDVSAYANNK 302
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 39.5 bits (90), Expect = 1e-04
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
NN++ + ++F IL + + +I L + L + LR S Y
Sbjct: 181 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTYNL 235
Score = 34.5 bits (77), Expect = 0.006
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQ 118
+D+S I ++ N L+ + +
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 29.1 bits (63), Expect = 0.32
Identities = 6/36 (16%), Positives = 18/36 (50%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYL 123
+ ++ + K F+ F +L+ + + +N + E +
Sbjct: 34 LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69
Score = 27.2 bits (58), Expect = 1.5
Identities = 2/34 (5%), Positives = 9/34 (26%), Gaps = 3/34 (8%)
Query: 88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE 121
+ + + ++ N L ++
Sbjct: 13 FLCQESKVTEIPSDLPRN---AIELRFVLTKLRV 43
Score = 25.6 bits (54), Expect = 4.6
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146
+ L+ N I+ + F ++ N +E L V + L + I
Sbjct: 157 ILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS 215
Query: 147 I 147
+
Sbjct: 216 L 216
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 40.0 bits (91), Expect = 1e-04
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 88 IDLSFNNIKNVD-KNMFTNFPNLKILYLHKNQI-EEYLSVF--VLRRVNSLRTLSLYGNP 143
+D+ + + + +++ L + E LR +L L+L N
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66
Query: 144 I 144
+
Sbjct: 67 L 67
Score = 39.6 bits (90), Expect = 1e-04
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNI-----KNVDKNMFTNFPNLK 110
R LWL+ +S SL + + L +DLS N + + +++ L+
Sbjct: 372 RVLWLADCDVSDS-SCSSLAATLLANHSLR-ELDLSNNCLGDAGILQLVESVRQPGCLLE 429
Query: 111 ILYLHKNQIEEYLSVF---VLRRVNSLRTLS 138
L L+ E + + + SLR +S
Sbjct: 430 QLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460
Score = 36.9 bits (83), Expect = 0.001
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 87 WIDLSFNNIKNVD----KNMFTNFPNLKILYLHKNQIEE----YLSVFVLRRVNSLRTLS 138
+ L+ ++ + +L+ L L N + + L V + L L
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432
Query: 139 LYGNPI-EKIREYRAVVSTMIPQLVTL 164
LY E++ + + P L +
Sbjct: 433 LYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 36.5 bits (82), Expect = 0.002
Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 19/98 (19%)
Query: 56 RSLWLSHNKIS---LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK----NMFTNFPN 108
+SL + ++S L L ++ L + + P
Sbjct: 5 QSLDIQCEELSDARWAELLPLLQQCQVVR--------LDDCGLTEARCKDISSALRVNPA 56
Query: 109 LKILYLHKNQIE----EYLSVFVLRRVNSLRTLSLYGN 142
L L L N++ + + ++ LSL
Sbjct: 57 LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
Score = 32.6 bits (72), Expect = 0.028
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI-EEYLSVF--VLRRVNSLRTLSLYGNP 143
L ++ + + + L++L+L + + S L +SLR L L N
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408
Query: 144 I 144
+
Sbjct: 409 L 409
Score = 30.7 bits (67), Expect = 0.13
Identities = 7/59 (11%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 108 NLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI-EKIREYRAVVSTMIPQLVTLD 165
+++ L + ++ + +L + + + L + E + + + P L L+
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 38.9 bits (89), Expect = 2e-04
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 74 LVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS 133
L + + + L+ NN+ + + NL L L +N + F +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF--GSHL 196
Query: 134 LRTLSLYGNP 143
L L+GNP
Sbjct: 197 LPFAFLHGNP 206
Score = 34.7 bits (78), Expect = 0.005
Identities = 8/48 (16%), Positives = 15/48 (31%)
Query: 82 PDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129
P + LS N + + L L L + ++ + L
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP 77
Score = 25.1 bits (53), Expect = 8.1
Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 11/69 (15%)
Query: 54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
DT L LS N + T L+ + L+ N+ + L +L
Sbjct: 32 DTTILHLSENLLY-----------TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG 80
Query: 114 LHKNQIEEY 122
+
Sbjct: 81 TLDLSHNQL 89
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 37.9 bits (86), Expect = 5e-04
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 59 WLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNI-----KNVDKNMFTNFPNLKILY 113
L+ +S + + L+ + + L +N I + + + P+L L
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308
Query: 114 LHKNQIEE 121
L+ N+ E
Sbjct: 309 LNGNRFSE 316
Score = 32.9 bits (73), Expect = 0.020
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 87 WIDLSFNNIKN------VDKNMFTNFPNLKILYLHKNQIE----EYLSVFVLRRVNSLRT 136
+ L+ + VD L+ L L N+IE L + ++ L
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306
Query: 137 LSLYGNPIEK 146
L L GN +
Sbjct: 307 LELNGNRFSE 316
Score = 29.8 bits (65), Expect = 0.23
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Query: 89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQI-EEYLSVF--VLRRVNSLRTLSLYGNPIE 145
++ + K+V + + ++K + L N I E + L
Sbjct: 14 AITTEDEKSVFAVLLED-DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72
Query: 146 KIREYRAVVSTMIPQL 161
++++ ++ Q
Sbjct: 73 RVKDEIPEALRLLLQA 88
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 32.3 bits (72), Expect = 0.028
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYG 141
L LS + + D L+ LYL KN I + L + +L L L+
Sbjct: 155 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFS 209
Score = 29.2 bits (64), Expect = 0.27
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 58 LWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKN 117
L ++ + L + I I + ++IK+V PN+ L+L+ N
Sbjct: 29 DNLKKKSVTDAVTQNEL--------NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGN 78
Query: 118 QIEEY 122
++ +
Sbjct: 79 KLTDI 83
Score = 28.8 bits (63), Expect = 0.33
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 81 DPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLY 140
D I + D ++ + + + I+ SV ++ + ++ L L
Sbjct: 20 DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 76
Query: 141 GNPI 144
GN +
Sbjct: 77 GNKL 80
Score = 26.1 bits (56), Expect = 2.8
Identities = 6/44 (13%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 104 TNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
F L K + + ++ +NS+ + + I+ +
Sbjct: 21 DAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV 61
Score = 25.4 bits (54), Expect = 5.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILD 81
++L+LS N IS + L L + +L+
Sbjct: 181 QNLYLSKNHISDLRALAGLKNLDVLE 206
Score = 25.0 bits (53), Expect = 6.2
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 8/40 (20%)
Query: 56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNI 95
+ +++ I V G+ L + T L L+ N +
Sbjct: 49 DQIIANNSDIKSVQGIQYLPNVTKL--------FLNGNKL 80
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 32.5 bits (72), Expect = 0.032
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 46 PPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTN 105
P G +L L + L + ++ L N ++ + + F +
Sbjct: 98 PATFHGLGRLHTLHLDRCGL------QELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 106 FPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
NL L+LH N+I + R ++SL L L+ N + +
Sbjct: 152 LGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHV 192
Score = 31.3 bits (69), Expect = 0.072
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 82 PDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYL 123
P I L N I +V F NL IL+LH N +
Sbjct: 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Score = 30.2 bits (66), Expect = 0.16
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 23/98 (23%)
Query: 70 GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE-------- 121
L +L T D + + L N I +V + F +L L LH+N++
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 122 ---------------YLSVFVLRRVNSLRTLSLYGNPI 144
L L + +L+ L L NP
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
Score = 27.9 bits (60), Expect = 0.82
Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 20/113 (17%)
Query: 54 DTRSLWLSHNKISLV-----YGLDSLVHRTILDPDLIGWIDLSF--------------NN 94
++ ++L N+IS V +L + L +F
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 95 IKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
+++VD F L L+L + L + R + +L+ L L N ++ +
Sbjct: 93 LRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQAL 144
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 31.5 bits (70), Expect = 0.045
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSL 139
+ N I ++ + PNL ++L NQI V L ++L ++L
Sbjct: 177 TLKADDNKISDIS--PLASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTL 224
Score = 30.4 bits (67), Expect = 0.13
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 81 DPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLY 140
DP L I ++ D + + L + ++ ++ +N+L L L
Sbjct: 15 DPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71
Query: 141 GNPI 144
N I
Sbjct: 72 DNQI 75
Score = 29.6 bits (65), Expect = 0.20
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 105 NFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
N + K+ + + ++ ++ + TLS +G + I
Sbjct: 17 ALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTI 56
Score = 29.6 bits (65), Expect = 0.20
Identities = 15/79 (18%), Positives = 23/79 (29%), Gaps = 8/79 (10%)
Query: 87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146
LS N + D N L L N+I + L + +L + L N I
Sbjct: 153 LQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKNNQISD 209
Query: 147 IREYRAVVSTMIPQLVTLD 165
+ L +
Sbjct: 210 VSPLAN-----TSNLFIVT 223
>d1jb7b_ b.40.4.3 (B:) Core domain of telomere end binding protein
beta subunit {Oxytricha nova [TaxId: 200597]}
Length = 216
Score = 28.5 bits (63), Expect = 0.48
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 106 FPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQL 161
FPN+ I+ L I LRRVNS + Y N E R +V + P L
Sbjct: 67 FPNVNIVDLTDKVIVINNWSLELRRVNSAEVFTSYAN-----LEARLIVHSFKPNL 117
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 28.1 bits (61), Expect = 0.69
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 103 FTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTL 137
N L+ L + N++ + VL ++ +L +L
Sbjct: 168 LANLTTLERLDISSNKVS---DISVLAKLTNLESL 199
Score = 25.8 bits (55), Expect = 3.5
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 72 DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
D+ +++ D L + D T+ + L + I+ S+ + +
Sbjct: 5 DTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK---SIDGVEYL 61
Query: 132 NSLRTLSLYGNP 143
N+L ++ N
Sbjct: 62 NNLTQINFSNNQ 73
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 229
Score = 26.0 bits (57), Expect = 3.1
Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 16/138 (11%)
Query: 19 LSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRT 78
LS + S + V ++ N+ +LG L RS ++ + + + + T
Sbjct: 75 LSQSILSSNEIVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLT 134
Query: 79 ILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY---LH---KNQIEEYLSVFVLRRVN 132
L + F IK ++ F L L ++++ + +
Sbjct: 135 QL-------AVIRFQTIKKTVEDFQDIFKELGAKISSILVDWCSDEVDNHFKLI---DKQ 184
Query: 133 SLRTLSLYGNPIEKIREY 150
L L I+ R+
Sbjct: 185 LLNDEMLSPGSIKSSRKQ 202
>d1gvha1 a.1.1.2 (A:1-146) Flavohemoglobin, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 146
Score = 24.6 bits (53), Expect = 7.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 100 KNMFTNFPNLKILYLHKNQ 118
MFT+ P LK ++ NQ
Sbjct: 30 DRMFTHNPELKEIFNMSNQ 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.383
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 754,713
Number of extensions: 34107
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 73
Length of query: 210
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,295,466
Effective search space: 167115114
Effective search space used: 167115114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.2 bits)