Query psy4163
Match_columns 85
No_of_seqs 101 out of 240
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 18:30:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10591 SPARC_Ca_bdg: Secrete 99.9 7.8E-24 1.7E-28 140.0 2.2 60 5-65 54-113 (113)
2 cd00252 SPARC_EC SPARC_EC; ext 99.8 9.6E-22 2.1E-26 130.9 5.4 68 6-77 49-116 (116)
3 KOG4004|consensus 99.8 7.6E-21 1.6E-25 138.5 0.5 71 7-77 189-259 (259)
4 KOG4578|consensus 99.7 4.1E-18 8.9E-23 131.0 2.1 68 4-72 332-402 (421)
5 KOG3555|consensus 99.7 1.3E-17 2.8E-22 128.8 3.5 70 6-82 251-320 (434)
6 PF13499 EF-hand_7: EF-hand do 99.3 2E-12 4.4E-17 75.8 5.4 58 7-65 2-65 (66)
7 KOG0044|consensus 99.1 1.9E-10 4E-15 82.7 5.7 67 7-74 102-181 (193)
8 cd00052 EH Eps15 homology doma 99.1 2.7E-10 5.8E-15 66.1 5.2 60 8-68 2-61 (67)
9 smart00027 EH Eps15 homology d 98.9 2.6E-09 5.7E-14 67.5 5.7 61 7-68 12-72 (96)
10 cd05022 S-100A13 S-100A13: S-1 98.9 4.3E-09 9.2E-14 67.1 5.0 70 7-81 10-84 (89)
11 cd05031 S-100A10_like S-100A10 98.8 6.6E-09 1.4E-13 65.5 5.3 60 7-67 10-78 (94)
12 cd00051 EFh EF-hand, calcium b 98.8 1.4E-08 3E-13 55.8 6.0 59 7-66 2-62 (63)
13 cd05027 S-100B S-100B: S-100B 98.8 7.8E-09 1.7E-13 65.4 5.3 61 7-68 10-79 (88)
14 cd05026 S-100Z S-100Z: S-100Z 98.8 8.5E-09 1.8E-13 65.5 5.2 59 8-67 13-80 (93)
15 cd05025 S-100A1 S-100A1: S-100 98.8 9.5E-09 2.1E-13 64.5 5.0 68 7-79 11-87 (92)
16 KOG0034|consensus 98.8 9.5E-09 2.1E-13 73.4 5.4 64 7-71 106-178 (187)
17 PF13833 EF-hand_8: EF-hand do 98.8 1.6E-08 3.5E-13 57.4 5.2 48 19-66 1-51 (54)
18 cd05023 S-100A11 S-100A11: S-1 98.8 1.8E-08 4E-13 63.9 5.2 58 9-67 13-79 (89)
19 cd00213 S-100 S-100: S-100 dom 98.7 2.1E-08 4.5E-13 62.0 5.1 62 7-69 10-80 (88)
20 COG5126 FRQ1 Ca2+-binding prot 98.7 2.1E-08 4.6E-13 70.3 5.6 59 7-66 94-154 (160)
21 cd05029 S-100A6 S-100A6: S-100 98.7 2.2E-08 4.8E-13 63.3 4.9 58 9-67 14-78 (88)
22 PTZ00183 centrin; Provisional 98.7 4.1E-08 8.9E-13 64.6 6.2 61 7-68 92-154 (158)
23 PTZ00184 calmodulin; Provision 98.7 4.8E-08 1E-12 63.3 6.1 59 8-67 87-147 (149)
24 KOG0027|consensus 98.6 6.4E-08 1.4E-12 65.3 5.5 63 7-70 10-74 (151)
25 KOG0027|consensus 98.5 1.9E-07 4.1E-12 63.0 5.4 61 6-67 86-148 (151)
26 PTZ00184 calmodulin; Provision 98.5 4.4E-07 9.5E-12 58.7 5.6 59 8-67 14-74 (149)
27 PTZ00183 centrin; Provisional 98.4 5.8E-07 1.3E-11 59.1 5.7 59 8-67 20-80 (158)
28 cd05030 calgranulins Calgranul 98.4 5.2E-07 1.1E-11 56.7 4.6 61 8-68 11-79 (88)
29 PRK12309 transaldolase/EF-hand 98.2 1.7E-06 3.7E-11 67.7 4.8 51 7-69 336-386 (391)
30 PF00036 EF-hand_1: EF hand; 98.2 2.1E-06 4.6E-11 44.4 2.8 25 42-66 2-26 (29)
31 KOG0037|consensus 98.0 1.2E-05 2.7E-10 59.0 5.9 63 6-69 123-189 (221)
32 PF13202 EF-hand_5: EF hand; P 98.0 5.5E-06 1.2E-10 41.4 2.8 23 42-64 1-23 (25)
33 PF12763 EF-hand_4: Cytoskelet 98.0 1.7E-05 3.6E-10 51.9 5.4 59 9-69 14-72 (104)
34 PF00036 EF-hand_1: EF hand; 98.0 5.2E-06 1.1E-10 42.9 2.3 27 7-34 2-28 (29)
35 KOG0041|consensus 97.9 1.8E-05 3.8E-10 58.3 4.5 61 8-69 102-164 (244)
36 cd05024 S-100A10 S-100A10: A s 97.9 3.2E-05 7E-10 49.9 5.1 57 9-67 12-75 (91)
37 KOG4223|consensus 97.8 1.8E-05 4E-10 60.9 4.0 63 3-66 159-226 (325)
38 PLN02964 phosphatidylserine de 97.8 5.6E-05 1.2E-09 62.6 6.0 61 7-68 181-243 (644)
39 KOG0044|consensus 97.8 4.3E-05 9.4E-10 55.0 4.6 63 3-66 62-126 (193)
40 COG5126 FRQ1 Ca2+-binding prot 97.7 7E-05 1.5E-09 52.6 5.1 63 6-70 19-85 (160)
41 PF13405 EF-hand_6: EF-hand do 97.7 4.1E-05 8.9E-10 39.3 2.7 26 42-67 2-27 (31)
42 KOG0036|consensus 97.7 0.00013 2.8E-09 58.2 6.2 72 9-81 86-160 (463)
43 KOG0377|consensus 97.6 0.00011 2.3E-09 59.5 5.3 62 7-69 549-616 (631)
44 KOG0036|consensus 97.6 0.00017 3.6E-09 57.6 5.5 65 8-73 17-84 (463)
45 PF13202 EF-hand_5: EF hand; P 97.5 6.7E-05 1.5E-09 37.4 1.9 22 9-31 3-24 (25)
46 KOG4251|consensus 97.4 0.00015 3.3E-09 55.2 2.9 62 4-66 100-166 (362)
47 KOG4223|consensus 97.3 0.00015 3.2E-09 56.0 2.4 53 11-64 247-301 (325)
48 PF13405 EF-hand_6: EF-hand do 97.2 0.00035 7.5E-09 35.8 2.2 25 8-33 3-27 (31)
49 PF14658 EF-hand_9: EF-hand do 97.1 0.0017 3.7E-08 39.7 5.4 57 10-67 3-63 (66)
50 KOG0028|consensus 97.1 0.0017 3.7E-08 46.2 5.9 59 7-66 108-168 (172)
51 KOG0046|consensus 97.0 0.0013 2.8E-08 54.0 5.4 65 6-72 20-90 (627)
52 smart00054 EFh EF-hand, calciu 96.9 0.0012 2.7E-08 30.6 2.8 25 42-66 2-26 (29)
53 PLN02964 phosphatidylserine de 96.9 0.0019 4.1E-08 53.7 5.4 55 8-67 146-206 (644)
54 KOG0034|consensus 96.8 0.0021 4.6E-08 46.0 4.4 59 8-68 36-95 (187)
55 KOG0038|consensus 96.7 0.003 6.6E-08 44.9 4.3 64 7-71 110-180 (189)
56 KOG3866|consensus 96.7 0.0019 4.1E-08 50.6 3.5 57 10-67 249-323 (442)
57 KOG0028|consensus 96.6 0.0034 7.4E-08 44.7 4.2 66 8-74 36-103 (172)
58 PF14788 EF-hand_10: EF hand; 96.6 0.007 1.5E-07 35.3 4.8 42 23-64 2-45 (51)
59 KOG0040|consensus 96.6 0.0034 7.4E-08 56.8 4.7 61 9-70 2257-2326(2399)
60 PF13499 EF-hand_7: EF-hand do 96.5 0.0028 6E-08 36.5 2.8 28 42-69 2-29 (66)
61 KOG0031|consensus 96.5 0.0084 1.8E-07 42.6 5.3 57 9-66 36-127 (171)
62 cd00052 EH Eps15 homology doma 96.4 0.0077 1.7E-07 34.3 4.3 34 43-76 2-38 (67)
63 KOG1955|consensus 96.4 0.0048 1E-07 50.8 4.3 58 10-68 236-293 (737)
64 KOG2562|consensus 96.3 0.0067 1.4E-07 49.0 4.7 59 6-65 352-421 (493)
65 KOG4065|consensus 96.2 0.011 2.5E-07 40.4 4.8 63 3-66 65-143 (144)
66 smart00054 EFh EF-hand, calciu 95.7 0.012 2.7E-07 27.0 2.4 26 8-34 3-28 (29)
67 KOG0037|consensus 95.5 0.026 5.6E-07 41.7 4.5 55 7-62 59-116 (221)
68 smart00027 EH Eps15 homology d 95.4 0.026 5.7E-07 35.2 3.8 34 42-75 12-48 (96)
69 cd00252 SPARC_EC SPARC_EC; ext 95.3 0.018 4E-07 38.2 3.0 64 2-66 10-74 (116)
70 PF13833 EF-hand_8: EF-hand do 95.2 0.021 4.5E-07 31.8 2.5 31 3-34 23-53 (54)
71 KOG1029|consensus 95.0 0.024 5.2E-07 48.8 3.4 57 9-66 199-255 (1118)
72 KOG2643|consensus 94.9 0.01 2.2E-07 47.9 0.9 56 10-68 206-261 (489)
73 KOG2562|consensus 94.0 0.066 1.4E-06 43.4 3.6 27 6-33 279-305 (493)
74 KOG4251|consensus 93.9 0.089 1.9E-06 40.4 3.9 52 13-65 289-342 (362)
75 PF10591 SPARC_Ca_bdg: Secrete 93.7 0.077 1.7E-06 34.8 3.0 63 2-67 12-81 (113)
76 KOG2643|consensus 93.2 0.11 2.5E-06 42.0 3.7 65 8-73 236-319 (489)
77 cd00051 EFh EF-hand, calcium b 93.1 0.13 2.9E-06 27.2 2.9 26 42-67 2-27 (63)
78 KOG0031|consensus 92.7 0.47 1E-05 33.8 5.8 62 5-67 101-164 (171)
79 PF14788 EF-hand_10: EF hand; 91.6 0.18 3.9E-06 29.4 2.3 29 6-35 22-50 (51)
80 cd05031 S-100A10_like S-100A10 90.6 0.4 8.7E-06 29.7 3.4 26 42-67 10-37 (94)
81 cd05025 S-100A1 S-100A1: S-100 88.7 0.78 1.7E-05 28.2 3.6 26 42-67 11-38 (92)
82 cd00213 S-100 S-100: S-100 dom 88.6 0.53 1.1E-05 28.5 2.7 26 42-67 10-37 (88)
83 cd05022 S-100A13 S-100A13: S-1 88.4 0.53 1.1E-05 29.7 2.7 29 6-35 48-76 (89)
84 PF06226 DUF1007: Protein of u 88.4 0.38 8.3E-06 34.5 2.3 30 1-35 50-79 (212)
85 KOG4666|consensus 87.2 0.74 1.6E-05 36.4 3.3 62 6-68 297-359 (412)
86 cd05026 S-100Z S-100Z: S-100Z 87.0 0.81 1.7E-05 28.6 2.9 28 7-35 55-82 (93)
87 cd05024 S-100A10 S-100A10: A s 86.7 1.2 2.6E-05 28.6 3.6 38 6-46 49-86 (91)
88 KOG0377|consensus 86.6 0.84 1.8E-05 37.6 3.5 46 21-66 445-490 (631)
89 cd05027 S-100B S-100B: S-100B 86.1 1.3 2.9E-05 27.6 3.5 26 42-67 10-37 (88)
90 KOG0030|consensus 85.4 1.3 2.9E-05 31.0 3.5 59 7-66 13-75 (152)
91 PRK12309 transaldolase/EF-hand 85.4 1.2 2.6E-05 35.2 3.7 26 38-63 332-357 (391)
92 PF09279 EF-hand_like: Phospho 85.2 1.6 3.4E-05 26.3 3.5 60 9-70 4-71 (83)
93 KOG0030|consensus 84.7 2.6 5.7E-05 29.5 4.8 53 11-65 94-148 (152)
94 cd05029 S-100A6 S-100A6: S-100 84.1 1.2 2.6E-05 27.8 2.6 28 6-34 52-79 (88)
95 cd05023 S-100A11 S-100A11: S-1 83.2 1.4 3.1E-05 27.5 2.7 29 41-69 11-40 (89)
96 KOG0998|consensus 82.9 0.37 7.9E-06 41.4 -0.1 59 10-69 288-346 (847)
97 PF06584 DIRP: DIRP; InterPro 80.7 1.5 3.3E-05 29.0 2.3 29 20-48 28-56 (109)
98 PF09069 EF-hand_3: EF-hand; 80.1 7 0.00015 25.0 5.1 60 7-70 5-77 (90)
99 cd05030 calgranulins Calgranul 78.7 2.8 6E-05 25.9 2.9 29 5-34 51-79 (88)
100 PF00404 Dockerin_1: Dockerin 73.7 4.5 9.7E-05 19.4 2.2 17 15-32 1-17 (21)
101 KOG0751|consensus 72.5 7.7 0.00017 32.5 4.6 55 14-69 83-137 (694)
102 KOG0169|consensus 70.8 7.4 0.00016 33.5 4.3 61 9-70 140-205 (746)
103 KOG1029|consensus 69.5 7 0.00015 34.3 3.9 56 10-67 21-76 (1118)
104 PF00046 Homeobox: Homeobox do 69.2 8.7 0.00019 21.2 3.2 28 21-48 23-50 (57)
105 PF14056 DUF4250: Domain of un 69.2 6.1 0.00013 23.2 2.6 25 56-80 20-44 (55)
106 PF05099 TerB: Tellurite resis 69.0 3 6.6E-05 26.9 1.4 51 19-69 36-90 (140)
107 cd00086 homeodomain Homeodomai 68.1 11 0.00023 20.6 3.4 28 21-48 23-50 (59)
108 PF13543 KSR1-SAM: SAM like do 64.5 23 0.0005 24.1 5.0 55 21-77 26-87 (129)
109 PF13404 HTH_AsnC-type: AsnC-t 63.1 13 0.00029 20.1 3.0 27 54-80 15-41 (42)
110 cd07313 terB_like_2 tellurium 61.7 17 0.00036 22.4 3.7 50 19-68 12-65 (104)
111 PF13591 MerR_2: MerR HTH fami 59.9 8.3 0.00018 23.7 2.1 18 57-74 1-18 (84)
112 COG3793 TerB Tellurite resista 59.5 24 0.00052 24.6 4.4 58 13-73 77-142 (144)
113 smart00389 HOX Homeodomain. DN 59.1 19 0.00041 19.5 3.3 28 21-48 23-50 (56)
114 PF12763 EF-hand_4: Cytoskelet 58.7 9 0.0002 24.8 2.1 31 3-34 41-71 (104)
115 PF09107 SelB-wing_3: Elongati 58.0 14 0.00031 21.0 2.7 30 20-52 8-37 (50)
116 PF10668 Phage_terminase: Phag 53.7 16 0.00035 21.7 2.5 28 53-84 19-46 (60)
117 PF12174 RST: RCD1-SRO-TAF4 (R 53.4 28 0.0006 21.1 3.6 53 18-71 4-56 (70)
118 KOG1954|consensus 51.3 26 0.00057 28.7 4.0 48 18-65 455-502 (532)
119 KOG0040|consensus 51.1 19 0.00041 34.1 3.5 30 37-66 2247-2279(2399)
120 KOG1707|consensus 49.6 16 0.00035 30.8 2.7 28 7-35 317-344 (625)
121 KOG0041|consensus 47.2 20 0.00042 26.9 2.6 30 42-71 101-133 (244)
122 TIGR03573 WbuX N-acetyl sugar 47.2 45 0.00099 25.4 4.7 31 20-50 300-332 (343)
123 TIGR01439 lp_hng_hel_AbrB loop 45.7 12 0.00026 19.4 0.9 22 51-72 3-25 (43)
124 PF08279 HTH_11: HTH domain; 44.0 46 0.001 18.0 3.3 29 54-82 13-41 (55)
125 KOG0042|consensus 42.7 32 0.0007 29.2 3.4 57 9-66 597-655 (680)
126 PF12419 DUF3670: SNF2 Helicas 42.3 65 0.0014 21.5 4.4 46 19-64 80-137 (141)
127 PF03374 ANT: Phage antirepres 41.6 29 0.00063 21.7 2.5 25 51-75 19-43 (111)
128 PRK11179 DNA-binding transcrip 41.3 35 0.00076 22.8 3.0 30 54-83 21-50 (153)
129 KOG3077|consensus 41.0 52 0.0011 25.0 4.0 45 37-81 62-109 (260)
130 KOG1707|consensus 41.0 33 0.00071 29.1 3.2 31 39-69 191-228 (625)
131 TIGR03488 cas_Cas5p CRISPR-ass 38.7 21 0.00045 26.2 1.5 59 6-69 55-127 (237)
132 KOG2243|consensus 38.6 73 0.0016 30.9 5.1 62 10-72 4062-4124(5019)
133 cd01671 CARD Caspase activatio 38.2 65 0.0014 18.7 3.5 48 19-69 24-71 (80)
134 cd08330 CARD_ASC_NALP1 Caspase 37.7 63 0.0014 19.8 3.5 46 19-67 26-71 (82)
135 PF00427 PBS_linker_poly: Phyc 37.2 22 0.00047 24.3 1.4 17 53-69 41-57 (131)
136 TIGR02787 codY_Gpos GTP-sensin 35.9 72 0.0016 24.2 4.1 32 43-75 186-217 (251)
137 KOG4347|consensus 35.7 46 0.00099 28.5 3.3 54 6-61 556-611 (671)
138 PF05042 Caleosin: Caleosin re 34.7 22 0.00047 25.5 1.1 27 43-69 10-39 (174)
139 KOG1157|consensus 34.3 9 0.00019 31.4 -1.0 69 2-75 435-503 (543)
140 PRK13503 transcriptional activ 34.2 70 0.0015 22.6 3.7 38 42-79 173-210 (278)
141 PF08414 NADPH_Ox: Respiratory 34.1 29 0.00062 22.8 1.5 18 53-70 41-58 (100)
142 TIGR01488 HAD-SF-IB Haloacid D 33.9 93 0.002 20.2 4.1 42 19-63 6-48 (177)
143 PF07492 Trehalase_Ca-bi: Neut 33.7 12 0.00027 19.5 -0.2 18 43-60 2-19 (30)
144 PF00619 CARD: Caspase recruit 33.5 64 0.0014 18.9 3.0 47 20-69 28-74 (85)
145 PF03979 Sigma70_r1_1: Sigma-7 33.3 46 0.00099 20.2 2.3 33 19-51 18-50 (82)
146 PF08726 EFhand_Ca_insen: Ca2+ 32.8 8.9 0.00019 23.3 -0.9 41 8-51 9-49 (69)
147 PF07900 DUF1670: Protein of u 31.8 1.3E+02 0.0029 22.3 4.9 61 23-83 70-132 (220)
148 PF06627 DUF1153: Protein of u 30.7 63 0.0014 20.9 2.7 27 54-80 47-73 (90)
149 PF05901 Excalibur: Excalibur 30.2 26 0.00057 18.5 0.7 9 13-22 26-34 (37)
150 PF09743 DUF2042: Uncharacteri 30.1 1.2E+02 0.0025 22.8 4.5 54 16-84 45-98 (272)
151 PF08220 HTH_DeoR: DeoR-like h 30.1 92 0.002 17.5 3.1 31 52-82 10-40 (57)
152 PF02209 VHP: Villin headpiece 29.8 58 0.0013 17.4 2.1 17 57-73 2-18 (36)
153 PF01023 S_100: S-100/ICaBP ty 29.6 77 0.0017 17.3 2.6 16 19-34 21-36 (44)
154 PF08044 DUF1707: Domain of un 29.5 28 0.0006 20.0 0.8 15 53-67 20-34 (53)
155 PF09373 PMBR: Pseudomurein-bi 29.0 90 0.0019 15.9 2.9 15 20-34 2-16 (33)
156 PRK11511 DNA-binding transcrip 28.9 1.2E+02 0.0026 19.6 3.9 16 56-71 25-40 (127)
157 KOG0998|consensus 28.9 27 0.00059 30.3 1.0 62 6-68 12-73 (847)
158 smart00088 PINT motif in prote 28.9 1.3E+02 0.0028 17.7 4.2 39 39-82 12-50 (88)
159 smart00753 PAM PCI/PINT associ 28.9 1.3E+02 0.0028 17.7 4.2 39 39-82 12-50 (88)
160 KOG0489|consensus 28.9 57 0.0012 24.1 2.6 30 19-48 180-209 (261)
161 PF06971 Put_DNA-bind_N: Putat 28.5 78 0.0017 18.0 2.6 32 44-75 16-47 (50)
162 TIGR03830 CxxCG_CxxCG_HTH puta 28.4 1.5E+02 0.0033 18.5 4.3 20 19-38 61-80 (127)
163 PRK11169 leucine-responsive tr 28.3 87 0.0019 21.1 3.3 32 52-83 24-55 (164)
164 COG1522 Lrp Transcriptional re 27.5 75 0.0016 20.6 2.8 30 53-82 19-48 (154)
165 PF05920 Homeobox_KN: Homeobox 27.4 1E+02 0.0022 16.5 2.8 27 21-47 9-35 (40)
166 PF09068 EF-hand_2: EF hand; 27.3 71 0.0015 21.3 2.6 58 9-66 45-123 (127)
167 COG2944 Predicted transcriptio 27.0 1.5E+02 0.0033 19.5 4.1 29 22-70 43-71 (104)
168 smart00345 HTH_GNTR helix_turn 26.8 1.1E+02 0.0023 16.1 4.5 30 53-82 16-46 (60)
169 KOG0751|consensus 26.7 1.4E+02 0.003 25.4 4.6 18 48-65 82-99 (694)
170 smart00420 HTH_DEOR helix_turn 26.6 1E+02 0.0022 15.8 3.2 28 55-82 13-40 (53)
171 PLN00010 cyclin-dependent kina 26.6 42 0.00091 21.5 1.3 17 53-70 32-48 (86)
172 PF09012 FeoC: FeoC like trans 25.7 1E+02 0.0022 17.8 2.9 29 54-82 12-40 (69)
173 cd04790 HTH_Cfa-like_unk Helix 25.7 2.3E+02 0.005 19.5 5.2 53 19-74 112-165 (172)
174 PF02319 E2F_TDP: E2F/DP famil 25.1 1E+02 0.0023 18.2 2.8 30 39-68 7-39 (71)
175 PF10075 PCI_Csn8: COP9 signal 25.1 87 0.0019 20.5 2.7 25 55-79 96-120 (143)
176 PF01399 PCI: PCI domain; Int 25.0 1.6E+02 0.0034 17.3 4.0 41 38-83 47-87 (105)
177 PRK02615 thiamine-phosphate py 24.3 72 0.0016 24.9 2.5 36 46-82 10-49 (347)
178 PHA03256 BDLF3; Provisional 24.3 73 0.0016 19.9 2.1 27 55-81 15-41 (77)
179 PRK09430 djlA Dna-J like membr 24.3 1.9E+02 0.0041 21.5 4.7 50 19-68 68-120 (267)
180 PRK08181 transposase; Validate 23.8 1.3E+02 0.0028 22.4 3.7 47 20-67 4-50 (269)
181 smart00344 HTH_ASNC helix_turn 23.7 1.1E+02 0.0025 18.6 2.9 29 54-82 15-43 (108)
182 TIGR01565 homeo_ZF_HD homeobox 23.5 46 0.001 19.5 1.0 24 23-46 30-53 (58)
183 PF08280 HTH_Mga: M protein tr 23.0 1.5E+02 0.0034 16.6 3.3 29 54-82 17-45 (59)
184 COG1274 PckA Phosphoenolpyruva 22.8 1.1E+02 0.0024 25.8 3.3 21 4-25 520-540 (608)
185 PF09851 SHOCT: Short C-termin 22.8 52 0.0011 16.6 1.0 11 54-64 14-24 (31)
186 KOG4233|consensus 22.0 52 0.0011 21.1 1.1 32 35-66 53-89 (90)
187 PLN03225 Serine/threonine-prot 21.6 1.3E+02 0.0029 24.4 3.6 55 11-66 490-546 (566)
188 KOG4578|consensus 21.6 66 0.0014 25.8 1.8 28 6-34 371-398 (421)
189 PF07531 TAFH: NHR1 homology t 21.5 63 0.0014 21.0 1.4 14 54-67 38-51 (96)
190 PF12486 DUF3702: ImpA domain 21.2 54 0.0012 22.7 1.1 22 11-33 75-96 (148)
191 cd02977 ArsC_family Arsenate R 20.9 1.1E+02 0.0023 18.9 2.4 66 11-78 26-95 (105)
192 smart00549 TAFH TAF homology. 20.8 60 0.0013 21.0 1.2 14 54-67 37-50 (92)
193 KOG0491|consensus 20.7 1E+02 0.0022 22.4 2.5 28 21-48 123-150 (194)
194 PF05810 NinF: NinF protein; 20.6 79 0.0017 18.8 1.6 17 38-54 35-51 (58)
195 PF13443 HTH_26: Cro/C1-type H 20.4 1.7E+02 0.0036 16.0 3.8 44 24-74 12-58 (63)
196 PRK10219 DNA-binding transcrip 20.1 2.2E+02 0.0048 17.3 3.9 40 21-68 20-59 (107)
197 TIGR01764 excise DNA binding d 20.1 1.4E+02 0.003 15.0 2.7 16 57-72 2-17 (49)
No 1
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=99.88 E-value=7.8e-24 Score=140.03 Aligned_cols=60 Identities=35% Similarity=0.671 Sum_probs=52.4
Q ss_pred chHhhhchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHh
Q psy4163 5 MVKGTAFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARC 65 (85)
Q Consensus 5 ~v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~c 65 (85)
.++.|+|.+||+| +||+|+++||.++++.++++++|+++|+++||+|+||+||+.||+.|
T Consensus 54 ~~~~W~F~~LD~n-~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 54 RVVHWKFCQLDRN-KDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHHH--T--SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhHhhhcCC-CCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 3889999999999 99999999999999999999999999999999999999999999998
No 2
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.85 E-value=9.6e-22 Score=130.92 Aligned_cols=68 Identities=40% Similarity=0.800 Sum_probs=62.5
Q ss_pred hHhhhchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCChhHHhhHH
Q psy4163 6 VKGTAFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIEDQC 77 (85)
Q Consensus 6 v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~e~~~~~ 77 (85)
-+.|+|.++|+| +||+||++||.+++ +.+.++|+++|++.||+|+||.||++|||.|| +.++++...|
T Consensus 49 ~l~w~F~~lD~d-~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl-~~~~~~~~~~ 116 (116)
T cd00252 49 PVGWMFNQLDGN-YDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF-IKEDDLCEAC 116 (116)
T ss_pred HHHHHHHHHCCC-CCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH-hChhhccccC
Confidence 378999999999 99999999999988 67889999999999999999999999999999 8888875443
No 3
>KOG4004|consensus
Probab=99.80 E-value=7.6e-21 Score=138.45 Aligned_cols=71 Identities=31% Similarity=0.674 Sum_probs=67.7
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCChhHHhhHH
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIEDQC 77 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~e~~~~~ 77 (85)
+.|+|.+||..|.||+||..||.+++..+.++|+|+++|+..||.|+||.|+++||..|||+.+.+|+..|
T Consensus 189 v~wqf~qld~~p~d~~~sh~el~pl~ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gikq~di~~~~ 259 (259)
T KOG4004|consen 189 VHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKDL 259 (259)
T ss_pred eeeeeccccCCCccccccccccccccCCcccHHhhchhhhhcccCCCCCceeHHHhhcccCcchhcccccC
Confidence 47999999999999999999999999999999999999999999999999999999999999999987543
No 4
>KOG4578|consensus
Probab=99.70 E-value=4.1e-18 Score=131.03 Aligned_cols=68 Identities=24% Similarity=0.459 Sum_probs=62.9
Q ss_pred hchHhhhchhcCCCCCCCcccHHhhHHHHHh---hccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCChhH
Q psy4163 4 SMVKGTAFTASPAQHVGRSVSRHELFPIRAN---FMALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDE 72 (85)
Q Consensus 4 ~~v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~---~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~e 72 (85)
+||++|.|.+||+| +++.|+++|+++|... ...+++|+++|+++||+|+|.+||++||..|||+.+++
T Consensus 332 eRvv~w~F~qLdkN-~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~~ 402 (421)
T KOG4578|consen 332 ERVVHWYFNQLDKN-SNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKER 402 (421)
T ss_pred hheeeeeeeeeccc-ccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcccccc
Confidence 57999999999999 9999999999998754 45789999999999999999999999999999998765
No 5
>KOG3555|consensus
Probab=99.69 E-value=1.3e-17 Score=128.81 Aligned_cols=70 Identities=27% Similarity=0.517 Sum_probs=65.3
Q ss_pred hHhhhchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCChhHHhhHHHHHhc
Q psy4163 6 VKGTAFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIEDQCEDVRN 82 (85)
Q Consensus 6 v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~e~~~~~~~~~~ 82 (85)
-++|||++||.| .||.|+.+||+.+... ..|.||++|++.||+.+||.||-.|||.||... ..||++-++
T Consensus 251 s~gWMFnklD~N-~Dl~Ld~sEl~~I~ld--knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~----~~pc~~e~~ 320 (434)
T KOG3555|consen 251 SLGWMFNKLDTN-YDLLLDQSELRAIELD--KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS----DPPCQAELC 320 (434)
T ss_pred hhhhhhhccccc-cccccCHHHhhhhhcc--CchhHHHHHHhhhcccccCccccchhhhhhccC----CCccccHHH
Confidence 478999999999 9999999999999876 789999999999999999999999999999999 789987654
No 6
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.35 E-value=2e-12 Score=75.85 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=51.2
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhhcc------chhhHHHHHhhhcCCCCCcccHHHHHHh
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANFMA------LEHCIAPFLNKCDADDDHLITLKEWARC 65 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~------~e~c~~~f~~~cD~n~Dg~ISl~Ew~~c 65 (85)
++..|..+|+| +||+|+.+||..+...+.. .+..++.+++.+|+|+||.||++||...
T Consensus 2 l~~~F~~~D~d-~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKD-GDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTT-SSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHcCC-ccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 46789999999 9999999999999987653 3467888899999999999999999875
No 7
>KOG0044|consensus
Probab=99.09 E-value=1.9e-10 Score=82.68 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=58.5
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhh----c---------cchhhHHHHHhhhcCCCCCcccHHHHHHhcCCChhHH
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANF----M---------ALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEI 73 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~----~---------~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~e~ 73 (85)
+.|.|..+|.| +||+||+.|+..+.... . .++.++..+++.+|.|+||.||++||......++..+
T Consensus 102 l~w~F~lyD~d-gdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i~ 180 (193)
T KOG0044|consen 102 LKWAFRLYDLD-GDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSIL 180 (193)
T ss_pred hhhhheeecCC-CCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHHH
Confidence 56999999999 99999999999987532 2 2688999999999999999999999999988887765
Q ss_pred h
Q psy4163 74 E 74 (85)
Q Consensus 74 ~ 74 (85)
.
T Consensus 181 ~ 181 (193)
T KOG0044|consen 181 R 181 (193)
T ss_pred H
Confidence 4
No 8
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.08 E-value=2.7e-10 Score=66.11 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=54.4
Q ss_pred hhhchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCC
Q psy4163 8 GTAFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLEL 68 (85)
Q Consensus 8 ~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~ 68 (85)
+-.|..+|+| ++|.|+..||..+....+.++.-++.+++.+|.|++|.|+++||...+.+
T Consensus 2 ~~~F~~~D~~-~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPD-GDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCC-CCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 3469999999 99999999999998877778888999999999999999999999887754
No 9
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.93 E-value=2.6e-09 Score=67.50 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=55.5
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCC
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLEL 68 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~ 68 (85)
+.-.|..+|+| ++|.|+.+||..+....+.++..++.++..+|.+++|.|+++||+..+..
T Consensus 12 l~~~F~~~D~d-~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 12 YEQIFRSLDKN-QDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHhCCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 34569999999 99999999999999888889999999999999999999999999887654
No 10
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.87 E-value=4.3e-09 Score=67.10 Aligned_cols=70 Identities=9% Similarity=0.126 Sum_probs=56.7
Q ss_pred HhhhchhcCC-CCCCCcccHHhhHHHHHh-hc--cch-hhHHHHHhhhcCCCCCcccHHHHHHhcCCChhHHhhHHHHHh
Q psy4163 7 KGTAFTASPA-QHVGRSVSRHELFPIRAN-FM--ALE-HCIAPFLNKCDADDDHLITLKEWARCLELNEDEIEDQCEDVR 81 (85)
Q Consensus 7 ~~w~F~~LD~-n~~Dg~L~~~EL~~~~~~-~~--~~e-~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~e~~~~~~~~~ 81 (85)
+.=.|..+|+ + ++|+|+..||+.++.. ++ ... .-++..++..|+|+||+|+++||...++-- ...|+..+
T Consensus 10 l~~~F~~fd~~~-~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l----~~~~~~~~ 84 (89)
T cd05022 10 LVSNFHKASVKG-GKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL----AKAVKGEK 84 (89)
T ss_pred HHHHHHHHhCCC-CCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH----HHHHHHHh
Confidence 4567999999 9 9999999999999876 43 334 669999999999999999999998877644 45555443
No 11
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.85 E-value=6.6e-09 Score=65.53 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=51.4
Q ss_pred HhhhchhcCC-CCC-CCcccHHhhHHHHHh-------hccchhhHHHHHhhhcCCCCCcccHHHHHHhcC
Q psy4163 7 KGTAFTASPA-QHV-GRSVSRHELFPIRAN-------FMALEHCIAPFLNKCDADDDHLITLKEWARCLE 67 (85)
Q Consensus 7 ~~w~F~~LD~-n~~-Dg~L~~~EL~~~~~~-------~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg 67 (85)
+.-.|..+|. | + +|.|+..||+.++.. ..+++..++.+++.+|.|+||.|+++||+..+.
T Consensus 10 l~~~F~~~D~~d-g~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 10 LILTFHRYAGKD-GDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHhccC-CCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4557999997 8 8 699999999998764 245788999999999999999999999987653
No 12
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.84 E-value=1.4e-08 Score=55.84 Aligned_cols=59 Identities=20% Similarity=0.210 Sum_probs=51.7
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhh--ccchhhHHHHHhhhcCCCCCcccHHHHHHhc
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANF--MALEHCIAPFLNKCDADDDHLITLKEWARCL 66 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~--~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~cl 66 (85)
+.+.|..+|.| ++|.|+.+|+..+...+ ..+..-+..+++.+|.|++|.|++.||...+
T Consensus 2 ~~~~f~~~d~~-~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKD-GDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCC-CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 35779999999 99999999999998765 3566678889999999999999999998765
No 13
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.83 E-value=7.8e-09 Score=65.43 Aligned_cols=61 Identities=13% Similarity=0.209 Sum_probs=52.6
Q ss_pred HhhhchhcC-CCCCCC-cccHHhhHHHHHh-----hc--cchhhHHHHHhhhcCCCCCcccHHHHHHhcCC
Q psy4163 7 KGTAFTASP-AQHVGR-SVSRHELFPIRAN-----FM--ALEHCIAPFLNKCDADDDHLITLKEWARCLEL 68 (85)
Q Consensus 7 ~~w~F~~LD-~n~~Dg-~L~~~EL~~~~~~-----~~--~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~ 68 (85)
+.-.|..+| +| +|| +|+..||+.++.. ++ +++.-++.+++..|.|+||+|+++||+..++-
T Consensus 10 l~~aF~~fD~~d-gdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 10 LIDVFHQYSGRE-GDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHhcccC-CCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 455799998 79 999 6999999999987 44 46777999999999999999999999877653
No 14
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.82 E-value=8.5e-09 Score=65.46 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=49.8
Q ss_pred hhhchhcC-CCCCCC-cccHHhhHHHHHhh-------ccchhhHHHHHhhhcCCCCCcccHHHHHHhcC
Q psy4163 8 GTAFTASP-AQHVGR-SVSRHELFPIRANF-------MALEHCIAPFLNKCDADDDHLITLKEWARCLE 67 (85)
Q Consensus 8 ~w~F~~LD-~n~~Dg-~L~~~EL~~~~~~~-------~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg 67 (85)
.-.|...| +| +|| .||..||+.+.... ...+..++.+++.+|.|+||.|+++||+..++
T Consensus 13 ~~~F~~~dd~d-gdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 13 IRIFHNYSGKE-GDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHccC-CCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 45699999 78 998 59999999998652 23567899999999999999999999987653
No 15
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.81 E-value=9.5e-09 Score=64.46 Aligned_cols=68 Identities=13% Similarity=0.232 Sum_probs=55.9
Q ss_pred HhhhchhcC-CCCCCC-cccHHhhHHHHHh-h------ccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCChhHHhhHH
Q psy4163 7 KGTAFTASP-AQHVGR-SVSRHELFPIRAN-F------MALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIEDQC 77 (85)
Q Consensus 7 ~~w~F~~LD-~n~~Dg-~L~~~EL~~~~~~-~------~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~e~~~~~ 77 (85)
+.-.|..+| +| ++| .|+.+||+.++.. + .+++..++.+++.+|.|++|.|+++||+..+..- ...|
T Consensus 11 l~~~F~~fDd~d-g~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~----~~~~ 85 (92)
T cd05025 11 LINVFHAHSGKE-GDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL----TVAC 85 (92)
T ss_pred HHHHHHHHhccc-CCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH----HHHH
Confidence 445799997 99 999 5999999999864 3 2467889999999999999999999998877643 5555
Q ss_pred HH
Q psy4163 78 ED 79 (85)
Q Consensus 78 ~~ 79 (85)
++
T Consensus 86 ~~ 87 (92)
T cd05025 86 NN 87 (92)
T ss_pred HH
Confidence 54
No 16
>KOG0034|consensus
Probab=98.80 E-value=9.5e-09 Score=73.41 Aligned_cols=64 Identities=25% Similarity=0.321 Sum_probs=54.3
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhhcc---------chhhHHHHHhhhcCCCCCcccHHHHHHhcCCChh
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANFMA---------LEHCIAPFLNKCDADDDHLITLKEWARCLELNED 71 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~---------~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~ 71 (85)
++..|.-+|.| ++|+|+++|+..++..+.. .+.-++.-+...|.|+||+||++||++.+...|.
T Consensus 106 l~faF~vYD~~-~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~ 178 (187)
T KOG0034|consen 106 LRFAFRVYDLD-GDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPD 178 (187)
T ss_pred HHHHHHHhcCC-CCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCcc
Confidence 46789999999 9999999999998865422 2446788999999999999999999999887644
No 17
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.79 E-value=1.6e-08 Score=57.35 Aligned_cols=48 Identities=17% Similarity=0.293 Sum_probs=43.1
Q ss_pred CCCcccHHhhHHHHHhh--c-cchhhHHHHHhhhcCCCCCcccHHHHHHhc
Q psy4163 19 VGRSVSRHELFPIRANF--M-ALEHCIAPFLNKCDADDDHLITLKEWARCL 66 (85)
Q Consensus 19 ~Dg~L~~~EL~~~~~~~--~-~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~cl 66 (85)
++|.|+++||+.++..+ . +++.-++.++..+|.|+||.||++||+.++
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 46999999999999654 4 778889999999999999999999999876
No 18
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.76 E-value=1.8e-08 Score=63.91 Aligned_cols=58 Identities=12% Similarity=0.210 Sum_probs=48.9
Q ss_pred hhchh-cCCCCCCC-cccHHhhHHHHHhh-------ccchhhHHHHHhhhcCCCCCcccHHHHHHhcC
Q psy4163 9 TAFTA-SPAQHVGR-SVSRHELFPIRANF-------MALEHCIAPFLNKCDADDDHLITLKEWARCLE 67 (85)
Q Consensus 9 w~F~~-LD~n~~Dg-~L~~~EL~~~~~~~-------~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg 67 (85)
-.|.. .|++ ++| +||++||+.+.... ...+.-+..+++.+|.|+||+|+++||+..++
T Consensus 13 ~~F~~y~~~d-g~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 13 AVFQKYAGKD-GDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHhccC-CCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 35888 8888 876 99999999998764 23467799999999999999999999987654
No 19
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.74 E-value=2.1e-08 Score=62.02 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=52.2
Q ss_pred HhhhchhcCC--CCCCCcccHHhhHHHHHh-hc------cchhhHHHHHhhhcCCCCCcccHHHHHHhcCCC
Q psy4163 7 KGTAFTASPA--QHVGRSVSRHELFPIRAN-FM------ALEHCIAPFLNKCDADDDHLITLKEWARCLELN 69 (85)
Q Consensus 7 ~~w~F~~LD~--n~~Dg~L~~~EL~~~~~~-~~------~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~ 69 (85)
+.-.|..+|+ | ++|.|+.+||..++.. .+ ..+.-++.+++.+|.|++|.|+++||+..++..
T Consensus 10 l~~~F~~~D~~~~-~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 10 IIDVFHKYSGKEG-DKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHhhccC-CCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4457999999 9 9999999999999864 22 236779999999999999999999998877643
No 20
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.74 E-value=2.1e-08 Score=70.33 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=53.8
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhhc--cchhhHHHHHhhhcCCCCCcccHHHHHHhc
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANFM--ALEHCIAPFLNKCDADDDHLITLKEWARCL 66 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~--~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~cl 66 (85)
+.|.|..+|+| +||+|+..||+.++..++ .+..-++..++.+|+|+||.|+++||+...
T Consensus 94 l~~aF~~fD~d-~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 94 LREAFKLFDKD-HDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred HHHHHHHhCCC-CCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 57999999999 999999999999998754 577789999999999999999999998754
No 21
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.73 E-value=2.2e-08 Score=63.34 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=50.5
Q ss_pred hhchhcCC-CCC-CCcccHHhhHHHHHh-----hccchhhHHHHHhhhcCCCCCcccHHHHHHhcC
Q psy4163 9 TAFTASPA-QHV-GRSVSRHELFPIRAN-----FMALEHCIAPFLNKCDADDDHLITLKEWARCLE 67 (85)
Q Consensus 9 w~F~~LD~-n~~-Dg~L~~~EL~~~~~~-----~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg 67 (85)
-.|.++|. | + +|+|+..||+.++.. ..+++..+..+++..|.|+||+|+++||...++
T Consensus 14 ~~F~~y~~~~-~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 14 AIFHKYSGRE-GDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHccC-CCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 46999998 6 7 899999999999852 335788899999999999999999999987765
No 22
>PTZ00183 centrin; Provisional
Probab=98.72 E-value=4.1e-08 Score=64.61 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=41.2
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhhc--cchhhHHHHHhhhcCCCCCcccHHHHHHhcCC
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANFM--ALEHCIAPFLNKCDADDDHLITLKEWARCLEL 68 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~--~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~ 68 (85)
+...|..+|.| ++|.|+..|+..++...+ ..+.-++..+..+|.|++|.||.+||..++.-
T Consensus 92 l~~~F~~~D~~-~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 92 ILKAFRLFDDD-KTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHhCCC-CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 34567777777 777777777777665433 45555666777777777777777777776654
No 23
>PTZ00184 calmodulin; Provisional
Probab=98.71 E-value=4.8e-08 Score=63.28 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=39.4
Q ss_pred hhhchhcCCCCCCCcccHHhhHHHHHhhc--cchhhHHHHHhhhcCCCCCcccHHHHHHhcC
Q psy4163 8 GTAFTASPAQHVGRSVSRHELFPIRANFM--ALEHCIAPFLNKCDADDDHLITLKEWARCLE 67 (85)
Q Consensus 8 ~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~--~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg 67 (85)
.-.|..+|.| ++|.|++.|+..++...+ .+...++.++..+|.|++|.||+.||..++.
T Consensus 87 ~~~F~~~D~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 87 KEAFKVFDRD-GNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHhhCCC-CCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 4557777777 777777777776665543 3555666677777777777777777766654
No 24
>KOG0027|consensus
Probab=98.64 E-value=6.4e-08 Score=65.33 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=56.5
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhhc--cchhhHHHHHhhhcCCCCCcccHHHHHHhcCCCh
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANFM--ALEHCIAPFLNKCDADDDHLITLKEWARCLELNE 70 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~--~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~ 70 (85)
++=.|..+|+| ++|+|+..||..+...++ +++.-+...++..|+|+||.|++.||+.++....
T Consensus 10 l~~~F~~fD~d-~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 10 LKEAFQLFDKD-GDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred HHHHHHHHCCC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhh
Confidence 45679999999 999999999999998765 5688999999999999999999999999987543
No 25
>KOG0027|consensus
Probab=98.54 E-value=1.9e-07 Score=63.02 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=53.9
Q ss_pred hHhhhchhcCCCCCCCcccHHhhHHHHHhhc--cchhhHHHHHhhhcCCCCCcccHHHHHHhcC
Q psy4163 6 VKGTAFTASPAQHVGRSVSRHELFPIRANFM--ALEHCIAPFLNKCDADDDHLITLKEWARCLE 67 (85)
Q Consensus 6 v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~--~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg 67 (85)
-+.=.|..+|+| +||+||..||+.++..++ .....++..++..|.|+||.|+++||+..+.
T Consensus 86 el~eaF~~fD~d-~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 86 ELKEAFRVFDKD-GDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHHccC-CCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 456689999999 999999999999998764 4567899999999999999999999998764
No 26
>PTZ00184 calmodulin; Provisional
Probab=98.47 E-value=4.4e-07 Score=58.72 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=45.5
Q ss_pred hhhchhcCCCCCCCcccHHhhHHHHHhhc--cchhhHHHHHhhhcCCCCCcccHHHHHHhcC
Q psy4163 8 GTAFTASPAQHVGRSVSRHELFPIRANFM--ALEHCIAPFLNKCDADDDHLITLKEWARCLE 67 (85)
Q Consensus 8 ~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~--~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg 67 (85)
.-.|..+|.| ++|.|+.+|+..+...++ +...-+...++.+|.|++|.|+++||..++.
T Consensus 14 ~~~F~~~D~~-~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 74 (149)
T PTZ00184 14 KEAFSLFDKD-GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMA 74 (149)
T ss_pred HHHHHHHcCC-CCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHH
Confidence 3468888888 888888888888776543 4555678888888888888888888887765
No 27
>PTZ00183 centrin; Provisional
Probab=98.44 E-value=5.8e-07 Score=59.06 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=44.6
Q ss_pred hhhchhcCCCCCCCcccHHhhHHHHHhhc--cchhhHHHHHhhhcCCCCCcccHHHHHHhcC
Q psy4163 8 GTAFTASPAQHVGRSVSRHELFPIRANFM--ALEHCIAPFLNKCDADDDHLITLKEWARCLE 67 (85)
Q Consensus 8 ~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~--~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg 67 (85)
.-.|..+|.| ++|.|+..|+..++...+ +...-+...+..+|.|++|.|++.||...+.
T Consensus 20 ~~~F~~~D~~-~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 80 (158)
T PTZ00183 20 REAFDLFDTD-GSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMT 80 (158)
T ss_pred HHHHHHhCCC-CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 3458888888 888888888888776543 4556677888888888888888888876654
No 28
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.40 E-value=5.2e-07 Score=56.69 Aligned_cols=61 Identities=10% Similarity=0.162 Sum_probs=49.7
Q ss_pred hhhchhcCCCC-CCCcccHHhhHHHHHhhc---cc----hhhHHHHHhhhcCCCCCcccHHHHHHhcCC
Q psy4163 8 GTAFTASPAQH-VGRSVSRHELFPIRANFM---AL----EHCIAPFLNKCDADDDHLITLKEWARCLEL 68 (85)
Q Consensus 8 ~w~F~~LD~n~-~Dg~L~~~EL~~~~~~~~---~~----e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~ 68 (85)
--.|.+.+.+. ++|+|++.||+.+..... ++ +..++.+++.+|.|+||.|+++||...++-
T Consensus 11 ~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 11 INVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 35688888662 368999999999986322 23 788999999999999999999999987763
No 29
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.22 E-value=1.7e-06 Score=67.68 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=45.4
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCC
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELN 69 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~ 69 (85)
+.+.|..+|.| +||.|++.|+.. +..++..+|.|+||.||.+||...++..
T Consensus 336 l~~aF~~~D~d-gdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 336 AQEIFRLYDLD-GDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHHhCCC-CCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 47899999999 999999999942 4778999999999999999999988753
No 30
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.16 E-value=2.1e-06 Score=44.38 Aligned_cols=25 Identities=20% Similarity=0.386 Sum_probs=19.6
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHhc
Q psy4163 42 IAPFLNKCDADDDHLITLKEWARCL 66 (85)
Q Consensus 42 ~~~f~~~cD~n~Dg~ISl~Ew~~cl 66 (85)
++..++.+|.|+||.||++||+.++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 4567788888888888888887765
No 31
>KOG0037|consensus
Probab=98.05 E-value=1.2e-05 Score=59.00 Aligned_cols=63 Identities=11% Similarity=0.137 Sum_probs=56.3
Q ss_pred hHhhh--chhcCCCCCCCcccHHhhHHHHHhh--ccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCC
Q psy4163 6 VKGTA--FTASPAQHVGRSVSRHELFPIRANF--MALEHCIAPFLNKCDADDDHLITLKEWARCLELN 69 (85)
Q Consensus 6 v~~w~--F~~LD~n~~Dg~L~~~EL~~~~~~~--~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~ 69 (85)
|.+|. |.+.|+| ++|.|+.+||+.....+ .++++-++-.++++|.-++|.|.+++|..|+-.-
T Consensus 123 i~~Wr~vF~~~D~D-~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 123 INQWRNVFRTYDRD-RSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHHHHHHHhcccC-CCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 66775 9999999 99999999999998765 4789999999999998889999999999998654
No 32
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.03 E-value=5.5e-06 Score=41.42 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=17.5
Q ss_pred HHHHHhhhcCCCCCcccHHHHHH
Q psy4163 42 IAPFLNKCDADDDHLITLKEWAR 64 (85)
Q Consensus 42 ~~~f~~~cD~n~Dg~ISl~Ew~~ 64 (85)
++.+++.+|.|+||.||.+||..
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHH
Confidence 35677788888888888888865
No 33
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.01 E-value=1.7e-05 Score=51.93 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=52.1
Q ss_pred hhchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCC
Q psy4163 9 TAFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELN 69 (85)
Q Consensus 9 w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~ 69 (85)
-.|..+| . ++|.|+..+..++...-+++..-+...-..+|.|+||.++.+||+-++-+-
T Consensus 14 ~~F~~l~-~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 14 QIFQSLD-P-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHCTS-S-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHhcC-C-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4588888 4 789999999999999889999999999999999999999999999887653
No 34
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.99 E-value=5.2e-06 Score=42.92 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=24.5
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHh
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRAN 34 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~ 34 (85)
++++|..+|+| +||+||.+|+..++..
T Consensus 2 ~~~~F~~~D~d-~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKD-GDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTT-SSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCCcCCHHHHHHHHHh
Confidence 47899999999 9999999999998765
No 35
>KOG0041|consensus
Probab=97.90 E-value=1.8e-05 Score=58.33 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=52.8
Q ss_pred hhhchhcCCCCCCCcccHHhhHHHHHhhccchhh--HHHHHhhhcCCCCCcccHHHHHHhcCCC
Q psy4163 8 GTAFTASPAQHVGRSVSRHELFPIRANFMALEHC--IAPFLNKCDADDDHLITLKEWARCLELN 69 (85)
Q Consensus 8 ~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c--~~~f~~~cD~n~Dg~ISl~Ew~~clg~~ 69 (85)
.-+|.++|.+ .||+|+-.||+.++.+++.|..= .+..++.-|.|.||+||..||.-.|+..
T Consensus 102 ~~~Fk~yDe~-rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 102 ESMFKQYDED-RDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHhccc-ccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 4579999999 99999999999999988765442 5789999999999999999998777653
No 36
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.89 E-value=3.2e-05 Score=49.86 Aligned_cols=57 Identities=9% Similarity=0.127 Sum_probs=45.7
Q ss_pred hhchhcCCCCCCCcccHHhhHHHHHhh-------ccchhhHHHHHhhhcCCCCCcccHHHHHHhcC
Q psy4163 9 TAFTASPAQHVGRSVSRHELFPIRANF-------MALEHCIAPFLNKCDADDDHLITLKEWARCLE 67 (85)
Q Consensus 9 w~F~~LD~n~~Dg~L~~~EL~~~~~~~-------~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg 67 (85)
-.|.++-.+ .+.|++.||+.++..- ..++.-++++++..|.|+||.|+++||....+
T Consensus 12 ~~FhkYaG~--~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 12 LTFHKFAGE--KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHcCC--CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 356666655 4699999999998542 23567799999999999999999999987664
No 37
>KOG4223|consensus
Probab=97.85 E-value=1.8e-05 Score=60.88 Aligned_cols=63 Identities=22% Similarity=0.228 Sum_probs=48.5
Q ss_pred hhchHhhh--chhcCCCCCCCcccHHhhHHHHHhhc-cc--hhhHHHHHhhhcCCCCCcccHHHHHHhc
Q psy4163 3 SSMVKGTA--FTASPAQHVGRSVSRHELFPIRANFM-AL--EHCIAPFLNKCDADDDHLITLKEWARCL 66 (85)
Q Consensus 3 ~~~v~~w~--F~~LD~n~~Dg~L~~~EL~~~~~~~~-~~--e~c~~~f~~~cD~n~Dg~ISl~Ew~~cl 66 (85)
-+|+++|+ |..-|.| +||.||+.|+..+++.-- +. +--++.=+.-.|.|+||+|+++||..=+
T Consensus 159 ~km~~rDe~rFk~AD~d-~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~ 226 (325)
T KOG4223|consen 159 KKMIARDEERFKAADQD-GDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDL 226 (325)
T ss_pred HHHHHHHHHHHhhcccC-CCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHH
Confidence 46777765 9999999 999999999999986421 11 1124556778899999999999997544
No 38
>PLN02964 phosphatidylserine decarboxylase
Probab=97.78 E-value=5.6e-05 Score=62.59 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=52.9
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhhc--cchhhHHHHHhhhcCCCCCcccHHHHHHhcCC
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANFM--ALEHCIAPFLNKCDADDDHLITLKEWARCLEL 68 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~--~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~ 68 (85)
++-.|..+|.| +||.|+..|+..++..+. .++.-+...++.+|.|+||.||.+|+...+..
T Consensus 181 i~~mf~~~D~D-gdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYD-EDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCC-CCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 45678999999 999999999999887654 56667999999999999999999999887655
No 39
>KOG0044|consensus
Probab=97.76 E-value=4.3e-05 Score=55.02 Aligned_cols=63 Identities=17% Similarity=0.079 Sum_probs=48.0
Q ss_pred hhchHhhhchhcCCCCCCCcccHHhhHHHHHh--hccchhhHHHHHhhhcCCCCCcccHHHHHHhc
Q psy4163 3 SSMVKGTAFTASPAQHVGRSVSRHELFPIRAN--FMALEHCIAPFLNKCDADDDHLITLKEWARCL 66 (85)
Q Consensus 3 ~~~v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~--~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~cl 66 (85)
++..+.-.|...|.| +||.|+-+|+.-.... -+..+.-.+--++.+|.|+||.||..|+...+
T Consensus 62 ~~~y~~~vF~~fD~~-~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv 126 (193)
T KOG0044|consen 62 ASKYAELVFRTFDKN-KDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIV 126 (193)
T ss_pred HHHHHHHHHHHhccc-CCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHH
Confidence 355778899999999 9999999995543322 13344445555899999999999999997654
No 40
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=97.73 E-value=7e-05 Score=52.62 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=52.6
Q ss_pred hHhhh--chhcCCCCCCCcccHHhhHHHHHhh--ccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCCh
Q psy4163 6 VKGTA--FTASPAQHVGRSVSRHELFPIRANF--MALEHCIAPFLNKCDADDDHLITLKEWARCLELNE 70 (85)
Q Consensus 6 v~~w~--F~~LD~n~~Dg~L~~~EL~~~~~~~--~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~ 70 (85)
+.+|+ |..+|.| ++|.|+++||..+++.+ +++++-+.+.++..|. +.+.|++.||...++...
T Consensus 19 i~~lkeaF~l~D~d-~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 19 IQELKEAFQLFDRD-SDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHHHHHHhCcC-CCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 45554 9999999 99999999999998754 4788888888888888 888888888888887753
No 41
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.70 E-value=4.1e-05 Score=39.31 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=20.9
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHhcC
Q psy4163 42 IAPFLNKCDADDDHLITLKEWARCLE 67 (85)
Q Consensus 42 ~~~f~~~cD~n~Dg~ISl~Ew~~clg 67 (85)
++.+++.+|.|+||.||.+||..+|.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 46788899999999999999988764
No 42
>KOG0036|consensus
Probab=97.66 E-value=0.00013 Score=58.21 Aligned_cols=72 Identities=21% Similarity=0.327 Sum_probs=60.0
Q ss_pred hhchhcCCCCCCCcccHHhhHHHHHhh--ccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCChhH-HhhHHHHHh
Q psy4163 9 TAFTASPAQHVGRSVSRHELFPIRANF--MALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDE-IEDQCEDVR 81 (85)
Q Consensus 9 w~F~~LD~n~~Dg~L~~~EL~~~~~~~--~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~e-~~~~~~~~~ 81 (85)
-.|..+|.| +||.++..|+.+++..+ .++..-+++|++..|.++++.|+++||..-+-+.+++ +...-.-||
T Consensus 86 ~~F~~iD~~-hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s~i~di~~~W~ 160 (463)
T KOG0036|consen 86 RIFQSIDLE-HDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPESDLEDIYDFWR 160 (463)
T ss_pred HHHhhhccc-cCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCChhHHHHHHHhhh
Confidence 469999999 99999999999998764 4677789999999999999999999999998887644 455444444
No 43
>KOG0377|consensus
Probab=97.62 E-value=0.00011 Score=59.51 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=55.0
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhh------ccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCC
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANF------MALEHCIAPFLNKCDADDDHLITLKEWARCLELN 69 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~------~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~ 69 (85)
+.-.|.-+|+| +.|.||.+|.+.....+ .....|+-...+..|.|+||.|.+.||.++|-+-
T Consensus 549 LetiF~~iD~D-~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 549 LETIFNIIDAD-NSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHHHHHhccC-CCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 45679999999 99999999999877643 2578899999999999999999999999999875
No 44
>KOG0036|consensus
Probab=97.56 E-value=0.00017 Score=57.56 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=54.4
Q ss_pred hhhchhcCCCCCCCcccHHhhHHHHHhhc---cchhhHHHHHhhhcCCCCCcccHHHHHHhcCCChhHH
Q psy4163 8 GTAFTASPAQHVGRSVSRHELFPIRANFM---ALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEI 73 (85)
Q Consensus 8 ~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~---~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~e~ 73 (85)
+-.|..||.+ +||.|+-++|......+. ++..-++.+++.||.|.||++.++||.+.+...+.++
T Consensus 17 ~~lf~~lD~~-~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l 84 (463)
T KOG0036|consen 17 RCLFKELDSK-NDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELEL 84 (463)
T ss_pred HHHHHHhccC-CCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHH
Confidence 5579999999 999999999998776543 4566788999999999999999999999987664443
No 45
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.52 E-value=6.7e-05 Score=37.41 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=20.0
Q ss_pred hhchhcCCCCCCCcccHHhhHHH
Q psy4163 9 TAFTASPAQHVGRSVSRHELFPI 31 (85)
Q Consensus 9 w~F~~LD~n~~Dg~L~~~EL~~~ 31 (85)
=.|.++|+| +||.||..|+..+
T Consensus 3 ~~F~~~D~d-~DG~is~~E~~~~ 24 (25)
T PF13202_consen 3 DAFQQFDTD-GDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHTTT-SSSEEEHHHHHHH
T ss_pred HHHHHHcCC-CCCcCCHHHHHHH
Confidence 369999999 9999999999875
No 46
>KOG4251|consensus
Probab=97.36 E-value=0.00015 Score=55.22 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=50.1
Q ss_pred hchHhhhchhcCCCCCCCcccHHhhHHHHHhh-----ccchhhHHHHHhhhcCCCCCcccHHHHHHhc
Q psy4163 4 SMVKGTAFTASPAQHVGRSVSRHELFPIRANF-----MALEHCIAPFLNKCDADDDHLITLKEWARCL 66 (85)
Q Consensus 4 ~~v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~-----~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~cl 66 (85)
++-+.=+|...|+| .||.||..|++...... ...+.-.+.|+..-|+||||.||.+||.--|
T Consensus 100 rrklmviFsKvDVN-tDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVN-TDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHHHHHhhcccC-ccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 44556789999999 99999999999865432 2334457789999999999999999996655
No 47
>KOG4223|consensus
Probab=97.31 E-value=0.00015 Score=55.96 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=43.9
Q ss_pred chhcCCCCCCCcccHHhhHHHHHhhc--cchhhHHHHHhhhcCCCCCcccHHHHHH
Q psy4163 11 FTASPAQHVGRSVSRHELFPIRANFM--ALEHCIAPFLNKCDADDDHLITLKEWAR 64 (85)
Q Consensus 11 F~~LD~n~~Dg~L~~~EL~~~~~~~~--~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~ 64 (85)
|...|+| +||+|+..||++.+.... ..+--++..+-.-|.|+||++|++|-..
T Consensus 247 ~~~~Dkn-kDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 247 FEFRDKN-KDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HHHhhcC-CCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 6789999 999999999998765432 3455678899999999999999999753
No 48
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.17 E-value=0.00035 Score=35.76 Aligned_cols=25 Identities=20% Similarity=0.061 Sum_probs=21.6
Q ss_pred hhhchhcCCCCCCCcccHHhhHHHHH
Q psy4163 8 GTAFTASPAQHVGRSVSRHELFPIRA 33 (85)
Q Consensus 8 ~w~F~~LD~n~~Dg~L~~~EL~~~~~ 33 (85)
+-.|..+|+| +||+|+..||..++.
T Consensus 3 ~~~F~~~D~d-~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 3 REAFKMFDKD-GDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHH-TT-SSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCC-CCCcCcHHHHHHHHH
Confidence 3469999999 999999999999887
No 49
>PF14658 EF-hand_9: EF-hand domain
Probab=97.14 E-value=0.0017 Score=39.71 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=51.2
Q ss_pred hchhcCCCCCCCcccHHhhHHHHHhh---ccchhhHHHHHhhhcCCCC-CcccHHHHHHhcC
Q psy4163 10 AFTASPAQHVGRSVSRHELFPIRANF---MALEHCIAPFLNKCDADDD-HLITLKEWARCLE 67 (85)
Q Consensus 10 ~F~~LD~n~~Dg~L~~~EL~~~~~~~---~~~e~c~~~f~~~cD~n~D-g~ISl~Ew~~clg 67 (85)
.|...|.+ +.|.|.-+.|..+++.. .+.+.-++.+.+..|+++. |.|+++.||..+.
T Consensus 3 ~F~~fD~~-~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFDTQ-KTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhhcCCc-CCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 68899999 99999999999998753 6789999999999999877 9999999998753
No 50
>KOG0028|consensus
Probab=97.10 E-value=0.0017 Score=46.16 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=45.9
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhhcc--chhhHHHHHhhhcCCCCCcccHHHHHHhc
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANFMA--LEHCIAPFLNKCDADDDHLITLKEWARCL 66 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~--~e~c~~~f~~~cD~n~Dg~ISl~Ew~~cl 66 (85)
+.-+|...|.| ++|.||..+|+.+...+++ .-.-+...+...|.++||.|+.+||...+
T Consensus 108 i~~afrl~D~D-~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~im 168 (172)
T KOG0028|consen 108 IKKAFRLFDDD-KTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIM 168 (172)
T ss_pred HHHHHHccccc-CCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 34578888888 8899999998888877654 34456777788888899999888887654
No 51
>KOG0046|consensus
Probab=97.05 E-value=0.0013 Score=54.03 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=55.7
Q ss_pred hHhhhchhcCCCCCCCcccHHhhHHHHHhhcc-c----hhhHHHHHhhhcCCCCCcccHHHHHH-hcCCChhH
Q psy4163 6 VKGTAFTASPAQHVGRSVSRHELFPIRANFMA-L----EHCIAPFLNKCDADDDHLITLKEWAR-CLELNEDE 72 (85)
Q Consensus 6 v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~-~----e~c~~~f~~~cD~n~Dg~ISl~Ew~~-clg~~~~e 72 (85)
-+.-+|..+| | ++|+++..||.+.....+. . +..++..+...++|.+|+|+++||.. +|++....
T Consensus 20 ~l~~kF~~~d-~-~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~~ 90 (627)
T KOG0046|consen 20 ELKEKFNKLD-D-QKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSKD 90 (627)
T ss_pred HHHHHHHhhc-C-CCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhhh
Confidence 3567899999 9 9999999999998876542 3 77899999999999999999999988 78877554
No 52
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.93 E-value=0.0012 Score=30.60 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=20.2
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHhc
Q psy4163 42 IAPFLNKCDADDDHLITLKEWARCL 66 (85)
Q Consensus 42 ~~~f~~~cD~n~Dg~ISl~Ew~~cl 66 (85)
++..++.+|.|++|.|++.||...+
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHH
Confidence 3567788899999999999988765
No 53
>PLN02964 phosphatidylserine decarboxylase
Probab=96.91 E-value=0.0019 Score=53.67 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=44.3
Q ss_pred hhhchhcCCCCCCCcccHHhhHHHHHhhc---cchhh---HHHHHhhhcCCCCCcccHHHHHHhcC
Q psy4163 8 GTAFTASPAQHVGRSVSRHELFPIRANFM---ALEHC---IAPFLNKCDADDDHLITLKEWARCLE 67 (85)
Q Consensus 8 ~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~---~~e~c---~~~f~~~cD~n~Dg~ISl~Ew~~clg 67 (85)
.-.|..+|.| +||.+ |..+...++ +.+.. ++..++.+|.|+||.|+++||...+.
T Consensus 146 keaF~lfD~d-gdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~ 206 (644)
T PLN02964 146 CESFDLLDPS-SSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIK 206 (644)
T ss_pred HHHHHHHCCC-CCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 3459999999 99996 666666554 44454 78999999999999999999986664
No 54
>KOG0034|consensus
Probab=96.81 E-value=0.0021 Score=45.96 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=45.2
Q ss_pred hhhchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCc-ccHHHHHHhcCC
Q psy4163 8 GTAFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHL-ITLKEWARCLEL 68 (85)
Q Consensus 8 ~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~-ISl~Ew~~clg~ 68 (85)
.-.|.+||.+.++|.++++|+..+... ..-.-+.+.++.+|++++|. |+.+||.+.|.+
T Consensus 36 ~~rF~kl~~~~~~g~lt~eef~~i~~~--~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~ 95 (187)
T KOG0034|consen 36 YERFKKLDRNNGDGYLTKEEFLSIPEL--ALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSV 95 (187)
T ss_pred HHHHHHhccccccCccCHHHHHHHHHH--hcCcHHHHHHHHHhccCCCCccCHHHHHHHHhh
Confidence 346888998878899999999988743 23344667888888888888 888888887765
No 55
>KOG0038|consensus
Probab=96.69 E-value=0.003 Score=44.86 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=51.0
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhhcc---ch----hhHHHHHhhhcCCCCCcccHHHHHHhcCCChh
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANFMA---LE----HCIAPFLNKCDADDDHLITLKEWARCLELNED 71 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~---~e----~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~ 71 (85)
+.+.|.-+|-| +|++|-...|......+-. +. --.++.++.-|.|+||+||+.||-...-..|+
T Consensus 110 ~~YAFkIYDfd-~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raPD 180 (189)
T KOG0038|consen 110 AKYAFKIYDFD-GDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAPD 180 (189)
T ss_pred hhheeEEeecC-CCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCcc
Confidence 46889999999 9999999999988765422 21 12578899999999999999999877655544
No 56
>KOG3866|consensus
Probab=96.68 E-value=0.0019 Score=50.56 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=44.3
Q ss_pred hchhcCCCCCCCcccHHhhHHHHHhh--------cc----------chhhHHHHHhhhcCCCCCcccHHHHHHhcC
Q psy4163 10 AFTASPAQHVGRSVSRHELFPIRANF--------MA----------LEHCIAPFLNKCDADDDHLITLKEWARCLE 67 (85)
Q Consensus 10 ~F~~LD~n~~Dg~L~~~EL~~~~~~~--------~~----------~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg 67 (85)
-|.-.|.| +||+|+..||..+...- +. .-++-...|+.-|+|+|..||++||.+.-.
T Consensus 249 FF~LHD~N-sDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 249 FFALHDLN-SDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred heeeeccC-CcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 47788999 99999999999876431 00 112446689999999999999999987653
No 57
>KOG0028|consensus
Probab=96.62 E-value=0.0034 Score=44.65 Aligned_cols=66 Identities=17% Similarity=0.210 Sum_probs=51.3
Q ss_pred hhhchhcCCCCCCCcccHHhhHHHHHhhc--cchhhHHHHHhhhcCCCCCcccHHHHHHhcCCChhHHh
Q psy4163 8 GTAFTASPAQHVGRSVSRHELFPIRANFM--ALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIE 74 (85)
Q Consensus 8 ~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~--~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~e~~ 74 (85)
.=.|...|.+ ++|+|+-+||.-..+.++ +.+.-+.+.+.-.|.++.|+|+.++|.........+..
T Consensus 36 ~e~f~lfd~~-~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d 103 (172)
T KOG0028|consen 36 KEAFELFDPD-MAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD 103 (172)
T ss_pred HHHHHhhccC-CCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC
Confidence 4568888999 999999999976665544 56777888999999999999999999877554444433
No 58
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.60 E-value=0.007 Score=35.35 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=34.2
Q ss_pred ccHHhhHHHHHhhc--cchhhHHHHHhhhcCCCCCcccHHHHHH
Q psy4163 23 VSRHELFPIRANFM--ALEHCIAPFLNKCDADDDHLITLKEWAR 64 (85)
Q Consensus 23 L~~~EL~~~~~~~~--~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~ 64 (85)
+|-+|++.+++.++ .++..+...++.||.+++|.+--+||..
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~ 45 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEE 45 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHH
Confidence 67899999998754 5788999999999999999999998854
No 59
>KOG0040|consensus
Probab=96.56 E-value=0.0034 Score=56.81 Aligned_cols=61 Identities=11% Similarity=0.164 Sum_probs=52.9
Q ss_pred hhchhcCCCCCCCcccHHhhHHHHHhhc---------cchhhHHHHHhhhcCCCCCcccHHHHHHhcCCCh
Q psy4163 9 TAFTASPAQHVGRSVSRHELFPIRANFM---------ALEHCIAPFLNKCDADDDHLITLKEWARCLELNE 70 (85)
Q Consensus 9 w~F~~LD~n~~Dg~L~~~EL~~~~~~~~---------~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~ 70 (85)
-+|.++|++ ++|.|+.++.+.+++.++ .|++-.+.++..-|+|.||.||+.+|...+--.+
T Consensus 2257 ~~fkhFDke-k~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2257 MMFKHFDKE-KNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred HHHHHhchh-hccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 579999999 999999999999998754 3566788999999999999999999998875443
No 60
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=96.52 E-value=0.0028 Score=36.55 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=23.8
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHhcCCC
Q psy4163 42 IAPFLNKCDADDDHLITLKEWARCLELN 69 (85)
Q Consensus 42 ~~~f~~~cD~n~Dg~ISl~Ew~~clg~~ 69 (85)
++..++.+|.|+||.||.+|+...+..-
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~ 29 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHL 29 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHh
Confidence 5678999999999999999998776543
No 61
>KOG0031|consensus
Probab=96.45 E-value=0.0084 Score=42.59 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=43.0
Q ss_pred hhchhcCCCCCCCcccHHhhHHHHHhhcc-----------------------------------chhhHHHHHhhhcCCC
Q psy4163 9 TAFTASPAQHVGRSVSRHELFPIRANFMA-----------------------------------LEHCIAPFLNKCDADD 53 (85)
Q Consensus 9 w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~-----------------------------------~e~c~~~f~~~cD~n~ 53 (85)
=.|.-+|+| +||.|++..|+....+++. ||.-|..=++.||.++
T Consensus 36 EAF~~mDqn-rDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~ 114 (171)
T KOG0031|consen 36 EAFNLMDQN-RDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEG 114 (171)
T ss_pred HHHHHHhcc-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccC
Confidence 359999999 9999999999998876532 2334555677889999
Q ss_pred CCcccHHHHHHhc
Q psy4163 54 DHLITLKEWARCL 66 (85)
Q Consensus 54 Dg~ISl~Ew~~cl 66 (85)
+|+|--+.+...|
T Consensus 115 ~G~I~~d~lre~L 127 (171)
T KOG0031|consen 115 SGKIDEDYLRELL 127 (171)
T ss_pred CCccCHHHHHHHH
Confidence 9999765554444
No 62
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.44 E-value=0.0077 Score=34.25 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=26.5
Q ss_pred HHHHhhhcCCCCCcccHHHHHHhc---CCChhHHhhH
Q psy4163 43 APFLNKCDADDDHLITLKEWARCL---ELNEDEIEDQ 76 (85)
Q Consensus 43 ~~f~~~cD~n~Dg~ISl~Ew~~cl---g~~~~e~~~~ 76 (85)
+..++.+|.|+||.||.+|+..+| |++.+++..-
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i 38 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQI 38 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHH
Confidence 456788999999999999998877 7765555443
No 63
>KOG1955|consensus
Probab=96.39 E-value=0.0048 Score=50.82 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=50.8
Q ss_pred hchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCC
Q psy4163 10 AFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLEL 68 (85)
Q Consensus 10 ~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~ 68 (85)
.|..+-.| -.|+|+-+--++|..+-+++-.-+..+-+.||+|+||-+||.|||.+|-+
T Consensus 236 QFrtvQpD-p~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 236 QFRTVQPD-PHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred hhhcccCC-cccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 47777777 66999999999998887788778889999999999999999999999865
No 64
>KOG2562|consensus
Probab=96.33 E-value=0.0067 Score=49.04 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=47.2
Q ss_pred hHhhhchhcCCCCCCCcccHHhhHHHHHhh-----------ccchhhHHHHHhhhcCCCCCcccHHHHHHh
Q psy4163 6 VKGTAFTASPAQHVGRSVSRHELFPIRANF-----------MALEHCIAPFLNKCDADDDHLITLKEWARC 65 (85)
Q Consensus 6 v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~-----------~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~c 65 (85)
.+.++|.-||.+ +||+|+..||+.+.... .+-+.+...++..--+-..++|||+++.+|
T Consensus 352 SleYwFrclDld-~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 352 SLEYWFRCLDLD-GDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred chhhheeeeecc-CCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 468899999999 99999999999887532 233556667777776677999999999875
No 65
>KOG4065|consensus
Probab=96.24 E-value=0.011 Score=40.45 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=48.4
Q ss_pred hhchHhhhchhcCCCCCCCcccHHhhHHHHHhh----------------ccchhhHHHHHhhhcCCCCCcccHHHHHHhc
Q psy4163 3 SSMVKGTAFTASPAQHVGRSVSRHELFPIRANF----------------MALEHCIAPFLNKCDADDDHLITLKEWARCL 66 (85)
Q Consensus 3 ~~~v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~----------------~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~cl 66 (85)
|...----|...|.| +||.|+--||.....-. ...++.|...++--|-|+||.|.+.||.+..
T Consensus 65 peqlqfHYF~MHDld-knn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 65 PEQLQFHYFSMHDLD-KNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred HHHHhhhhhhhhccC-cCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 333333458889999 99999999999866321 0136678889999999999999999998754
No 66
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.75 E-value=0.012 Score=26.99 Aligned_cols=26 Identities=12% Similarity=0.028 Sum_probs=22.6
Q ss_pred hhhchhcCCCCCCCcccHHhhHHHHHh
Q psy4163 8 GTAFTASPAQHVGRSVSRHELFPIRAN 34 (85)
Q Consensus 8 ~w~F~~LD~n~~Dg~L~~~EL~~~~~~ 34 (85)
+..|..+|.| ++|.|+..|+..+...
T Consensus 3 ~~~f~~~d~~-~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKD-GDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCC-CCCcEeHHHHHHHHHh
Confidence 5679999999 9999999999887654
No 67
>KOG0037|consensus
Probab=95.52 E-value=0.026 Score=41.69 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=33.2
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhh---ccchhhHHHHHhhhcCCCCCcccHHHH
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANF---MALEHCIAPFLNKCDADDDHLITLKEW 62 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~---~~~e~c~~~f~~~cD~n~Dg~ISl~Ew 62 (85)
+.=.|.+.|+| +.|.|+.+||...+... ...-.=++-.+..+|.+.+|+|...||
T Consensus 59 ~~~~f~~vD~d-~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF 116 (221)
T KOG0037|consen 59 LAGWFQSVDRD-RSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEF 116 (221)
T ss_pred HHHHHHhhCcc-ccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHH
Confidence 34469999999 99999999999886521 112222233444444444444444444
No 68
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=95.43 E-value=0.026 Score=35.23 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=26.4
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHhc---CCChhHHhh
Q psy4163 42 IAPFLNKCDADDDHLITLKEWARCL---ELNEDEIED 75 (85)
Q Consensus 42 ~~~f~~~cD~n~Dg~ISl~Ew~~cl---g~~~~e~~~ 75 (85)
++..+..||.|++|.||.+|+..+| |++..++..
T Consensus 12 l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~ 48 (96)
T smart00027 12 YEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAK 48 (96)
T ss_pred HHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHH
Confidence 4455778999999999999998876 666555443
No 69
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=95.34 E-value=0.018 Score=38.18 Aligned_cols=64 Identities=9% Similarity=0.059 Sum_probs=37.0
Q ss_pred chhchHhhhchhcCCCCCCCcccHHhhHHHHHhh-ccchhhHHHHHhhhcCCCCCcccHHHHHHhc
Q psy4163 2 FSSMVKGTAFTASPAQHVGRSVSRHELFPIRANF-MALEHCIAPFLNKCDADDDHLITLKEWARCL 66 (85)
Q Consensus 2 ~~~~v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~-~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~cl 66 (85)
||+|...|-+.-+-.=.+... ++.+-..+...+ ...+.-+.--+..+|.|+||.||.+|.....
T Consensus 10 ~~~R~~dW~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~ 74 (116)
T cd00252 10 FPLRLRDWFKNVHEDLKERDE-LEKHKLRLKKSLYPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR 74 (116)
T ss_pred HHHHHHHHHHHHHHHHhhccc-chhhhchhhhhhhHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 789999998876541101111 111111111111 1122235557788899999999999998764
No 70
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=95.18 E-value=0.021 Score=31.81 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=26.3
Q ss_pred hhchHhhhchhcCCCCCCCcccHHhhHHHHHh
Q psy4163 3 SSMVKGTAFTASPAQHVGRSVSRHELFPIRAN 34 (85)
Q Consensus 3 ~~~v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~ 34 (85)
+..-+...|..+|.| +||.|+..|+..+...
T Consensus 23 s~~e~~~l~~~~D~~-~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 23 SEEEVDRLFREFDTD-GDGYISFDEFISMMQR 53 (54)
T ss_dssp CHHHHHHHHHHHTTS-SSSSEEHHHHHHHHHH
T ss_pred CHHHHHHHHHhcccC-CCCCCCHHHHHHHHHh
Confidence 444578899999999 9999999999988653
No 71
>KOG1029|consensus
Probab=95.02 E-value=0.024 Score=48.79 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=51.6
Q ss_pred hhchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhc
Q psy4163 9 TAFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCL 66 (85)
Q Consensus 9 w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~cl 66 (85)
=.|+.||+- ..|+||-.--+..+.--+++...+...-..-|+|+||++|-+||.-..
T Consensus 199 QlFNa~Dkt-rsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 199 QLFNALDKT-RSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred HHhhhcccc-cccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 359999999 999999999999887778899999999999999999999999996554
No 72
>KOG2643|consensus
Probab=94.90 E-value=0.01 Score=47.86 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=47.8
Q ss_pred hchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCC
Q psy4163 10 AFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLEL 68 (85)
Q Consensus 10 ~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~ 68 (85)
.|..|| .+|.||-+|+.=+...+..|++-.+-=++.||+|+||.|..+||-....+
T Consensus 206 iF~~lg---~~GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~l 261 (489)
T KOG2643|consen 206 IFYKLG---ESGLISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQL 261 (489)
T ss_pred eEEEcC---CCCeeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHH
Confidence 455555 55999999999999888889888877889999999999999999877654
No 73
>KOG2562|consensus
Probab=93.99 E-value=0.066 Score=43.44 Aligned_cols=27 Identities=11% Similarity=0.012 Sum_probs=23.0
Q ss_pred hHhhhchhcCCCCCCCcccHHhhHHHHH
Q psy4163 6 VKGTAFTASPAQHVGRSVSRHELFPIRA 33 (85)
Q Consensus 6 v~~w~F~~LD~n~~Dg~L~~~EL~~~~~ 33 (85)
|+==+|-.||+| +||.|++.+|..+..
T Consensus 279 viy~kFweLD~D-hd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 279 VIYCKFWELDTD-HDGLIDKEDLKRYGD 305 (493)
T ss_pred HHHHHHhhhccc-cccccCHHHHHHHhc
Confidence 444579999999 999999999998764
No 74
>KOG4251|consensus
Probab=93.88 E-value=0.089 Score=40.36 Aligned_cols=52 Identities=15% Similarity=0.081 Sum_probs=41.8
Q ss_pred hcCCCCCCCcccHHhhHHHHHhhc--cchhhHHHHHhhhcCCCCCcccHHHHHHh
Q psy4163 13 ASPAQHVGRSVSRHELFPIRANFM--ALEHCIAPFLNKCDADDDHLITLKEWARC 65 (85)
Q Consensus 13 ~LD~n~~Dg~L~~~EL~~~~~~~~--~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~c 65 (85)
.+|.| +||.+|.+||..|....+ ..-+-+...+..-|.|+|.++|++|-.+.
T Consensus 289 lIDsN-hDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 289 LIDSN-HDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred HhhcC-CccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 47999 999999999999975433 23344677899999999999999997653
No 75
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=93.70 E-value=0.077 Score=34.85 Aligned_cols=63 Identities=8% Similarity=-0.055 Sum_probs=35.0
Q ss_pred chhchHhhhchhc------CCCCCCCcccHHhhHHHHHhhccchhhHHH-HHhhhcCCCCCcccHHHHHHhcC
Q psy4163 2 FSSMVKGTAFTAS------PAQHVGRSVSRHELFPIRANFMALEHCIAP-FLNKCDADDDHLITLKEWARCLE 67 (85)
Q Consensus 2 ~~~~v~~w~F~~L------D~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~-f~~~cD~n~Dg~ISl~Ew~~clg 67 (85)
||+|.+.|-+..+ +.. .++..+ ..............-+-. .+...|.|+||.++..|+..-..
T Consensus 12 F~~RL~dWf~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~ 81 (113)
T PF10591_consen 12 FPRRLLDWFKNLMEQSKSRDEL-SDHYIE--LLKRDESSSYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRR 81 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC-CSS-HH--HHHHHHHHTGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGS
T ss_pred HHHHHHHHHHHHHHHHhccccc-cccccc--ccccccccchhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHH
Confidence 7899999988753 333 222222 222222222233333444 48999999999999999977766
No 76
>KOG2643|consensus
Probab=93.24 E-value=0.11 Score=41.98 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=45.2
Q ss_pred hhhchhcCCCCCCCcccHHhhHHHHHhhc-------------------cchhhHHHHHhhhcCCCCCcccHHHHHHhcCC
Q psy4163 8 GTAFTASPAQHVGRSVSRHELFPIRANFM-------------------ALEHCIAPFLNKCDADDDHLITLKEWARCLEL 68 (85)
Q Consensus 8 ~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~-------------------~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~ 68 (85)
+=.|..+|.| +||-|+++|+....+... ..+-|..=-.-.|..++++++|.+||.+-...
T Consensus 236 ~IAFKMFD~d-gnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~ 314 (489)
T KOG2643|consen 236 RIAFKMFDLD-GNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQEN 314 (489)
T ss_pred eeeeeeeecC-CCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHH
Confidence 3468999999 999999999998774321 11223332445677899999999999776544
Q ss_pred ChhHH
Q psy4163 69 NEDEI 73 (85)
Q Consensus 69 ~~~e~ 73 (85)
=+.||
T Consensus 315 Lq~Ei 319 (489)
T KOG2643|consen 315 LQEEI 319 (489)
T ss_pred HHHHH
Confidence 34443
No 77
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=93.08 E-value=0.13 Score=27.25 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=21.6
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHhcC
Q psy4163 42 IAPFLNKCDADDDHLITLKEWARCLE 67 (85)
Q Consensus 42 ~~~f~~~cD~n~Dg~ISl~Ew~~clg 67 (85)
+...++.+|.|++|.|+.+|+...+.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~ 27 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALK 27 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 34567889999999999999987773
No 78
>KOG0031|consensus
Probab=92.73 E-value=0.47 Score=33.82 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=54.4
Q ss_pred chHhhhchhcCCCCCCCcccHHhhHHHHHhh--ccchhhHHHHHhhhcCCCCCcccHHHHHHhcC
Q psy4163 5 MVKGTAFTASPAQHVGRSVSRHELFPIRANF--MALEHCIAPFLNKCDADDDHLITLKEWARCLE 67 (85)
Q Consensus 5 ~v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~--~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg 67 (85)
-|+.=.|..+|-+ +.|+|..+.|++++... ...+.-++..++.|=.|..|.|...+|+..+.
T Consensus 101 ~~I~~AF~~FD~~-~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 101 EVILNAFKTFDDE-GSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHhcCcc-CCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 3677789999999 99999999999998654 35777899999999999999999999998764
No 79
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=91.63 E-value=0.18 Score=29.39 Aligned_cols=29 Identities=7% Similarity=0.047 Sum_probs=24.2
Q ss_pred hHhhhchhcCCCCCCCcccHHhhHHHHHhh
Q psy4163 6 VKGTAFTASPAQHVGRSVSRHELFPIRANF 35 (85)
Q Consensus 6 v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~ 35 (85)
-+...|...|+. ++|.|+.+|+..++..+
T Consensus 22 yA~~LFq~~D~s-~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 22 YARQLFQECDKS-QSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHH-SS-SSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-CCCCccHHHHHHHHHHh
Confidence 456789999999 99999999999998753
No 80
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=90.65 E-value=0.4 Score=29.72 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=21.3
Q ss_pred HHHHHhhhcC-CC-CCcccHHHHHHhcC
Q psy4163 42 IAPFLNKCDA-DD-DHLITLKEWARCLE 67 (85)
Q Consensus 42 ~~~f~~~cD~-n~-Dg~ISl~Ew~~clg 67 (85)
+..-+..+|. |+ ||.||..|+..+|.
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~ 37 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLME 37 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHH
Confidence 5566788886 97 69999999998764
No 81
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=88.66 E-value=0.78 Score=28.22 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=22.4
Q ss_pred HHHHHhhhc-CCCCC-cccHHHHHHhcC
Q psy4163 42 IAPFLNKCD-ADDDH-LITLKEWARCLE 67 (85)
Q Consensus 42 ~~~f~~~cD-~n~Dg-~ISl~Ew~~clg 67 (85)
+..-++.+| .|++| .||..|+..+|.
T Consensus 11 l~~~F~~fDd~dg~G~~Is~~El~~~l~ 38 (92)
T cd05025 11 LINVFHAHSGKEGDKYKLSKKELKDLLQ 38 (92)
T ss_pred HHHHHHHHhcccCCCCeECHHHHHHHHH
Confidence 566788896 99999 599999999985
No 82
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=88.59 E-value=0.53 Score=28.53 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.0
Q ss_pred HHHHHhhhcC--CCCCcccHHHHHHhcC
Q psy4163 42 IAPFLNKCDA--DDDHLITLKEWARCLE 67 (85)
Q Consensus 42 ~~~f~~~cD~--n~Dg~ISl~Ew~~clg 67 (85)
+..-+..+|. |++|.||.+|+...+.
T Consensus 10 l~~~F~~~D~~~~~~G~Is~~el~~~l~ 37 (88)
T cd00213 10 IIDVFHKYSGKEGDKDTLSKKELKELLE 37 (88)
T ss_pred HHHHHHHHhhccCCCCcCcHHHHHHHHH
Confidence 4555888999 8999999999998874
No 83
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=88.38 E-value=0.53 Score=29.70 Aligned_cols=29 Identities=7% Similarity=0.059 Sum_probs=24.9
Q ss_pred hHhhhchhcCCCCCCCcccHHhhHHHHHhh
Q psy4163 6 VKGTAFTASPAQHVGRSVSRHELFPIRANF 35 (85)
Q Consensus 6 v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~ 35 (85)
-+.-++..+|.| +||.|+-.|...++..+
T Consensus 48 ~v~~mi~~~D~d-~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 48 GLEEKMKNLDVN-QDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHhCCC-CCCCCcHHHHHHHHHHH
Confidence 457789999999 99999999998887653
No 84
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=88.37 E-value=0.38 Score=34.51 Aligned_cols=30 Identities=13% Similarity=0.178 Sum_probs=24.3
Q ss_pred CchhchHhhhchhcCCCCCCCcccHHhhHHHHHhh
Q psy4163 1 MFSSMVKGTAFTASPAQHVGRSVSRHELFPIRANF 35 (85)
Q Consensus 1 ~~~~~v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~ 35 (85)
|||+.++. .+|.| +||.++.+||..+.+..
T Consensus 50 ~~S~~ll~----~~D~~-~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 50 FFSAYLLE----GLDKD-GDGKLDPEELAALAKEI 79 (212)
T ss_pred hhHHHHHH----hhhhc-ccCCCCHHHHHHHHHHH
Confidence 45665555 78999 99999999999998753
No 85
>KOG4666|consensus
Probab=87.17 E-value=0.74 Score=36.44 Aligned_cols=62 Identities=13% Similarity=0.047 Sum_probs=50.9
Q ss_pred hHhhhchhcCCCCCCCcccHHhhHHHHHh-hccchhhHHHHHhhhcCCCCCcccHHHHHHhcCC
Q psy4163 6 VKGTAFTASPAQHVGRSVSRHELFPIRAN-FMALEHCIAPFLNKCDADDDHLITLKEWARCLEL 68 (85)
Q Consensus 6 v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~-~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~ 68 (85)
+++..|..++++ -||++..++|.-+++. ++...--+.-.+..-+--.||+|+..+|.+-...
T Consensus 297 iiq~afk~f~v~-eDg~~ge~~ls~ilq~~lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 297 IIQYAFKRFSVA-EDGISGEHILSLILQVVLGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred HHHHHHHhcccc-cccccchHHHHHHHHHhcCcceeeccccchhhhcccCcceeHHHHHHHHHh
Confidence 788999999999 9999999999988864 5556666677888888888999999999765433
No 86
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=86.98 E-value=0.81 Score=28.61 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=24.2
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhh
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANF 35 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~ 35 (85)
+.=.+..+|+| +||.|+-+|...++..+
T Consensus 55 v~~i~~elD~n-~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 55 VDKIMNDLDSN-KDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHhCCC-CCCCCCHHHHHHHHHHH
Confidence 45569999999 99999999999888764
No 87
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=86.75 E-value=1.2 Score=28.61 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=29.3
Q ss_pred hHhhhchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHH
Q psy4163 6 VKGTAFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFL 46 (85)
Q Consensus 6 v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~ 46 (85)
++.-.|..||.| +||.|+-+|.-.++..+ .-.|=+-|.
T Consensus 49 ~vd~im~~LD~n-~Dg~vdF~EF~~Lv~~l--~~ac~~~~~ 86 (91)
T cd05024 49 AVDKIMKDLDDC-RDGKVGFQSFFSLIAGL--LIACNDYYV 86 (91)
T ss_pred HHHHHHHHhCCC-CCCcCcHHHHHHHHHHH--HHHHHHHHH
Confidence 456789999999 99999999999998764 344444443
No 88
>KOG0377|consensus
Probab=86.61 E-value=0.84 Score=37.56 Aligned_cols=46 Identities=17% Similarity=0.385 Sum_probs=37.1
Q ss_pred CcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhc
Q psy4163 21 RSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCL 66 (85)
Q Consensus 21 g~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~cl 66 (85)
|.++.+-|+.++.++..-..-+..=++..|..+.|+||+..|+.|.
T Consensus 445 ~~vEeSAlk~Lrerl~s~~sdL~~eF~~~D~~ksG~lsis~Wa~~m 490 (631)
T KOG0377|consen 445 GIVEESALKELRERLRSHRSDLEDEFRKYDPKKSGKLSISHWAKCM 490 (631)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHhcChhhcCeeeHHHHHHHH
Confidence 5667777777777766666667777889999999999999999885
No 89
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=86.05 E-value=1.3 Score=27.57 Aligned_cols=26 Identities=8% Similarity=0.226 Sum_probs=21.0
Q ss_pred HHHHHhhhc-CCCCC-cccHHHHHHhcC
Q psy4163 42 IAPFLNKCD-ADDDH-LITLKEWARCLE 67 (85)
Q Consensus 42 ~~~f~~~cD-~n~Dg-~ISl~Ew~~clg 67 (85)
+..-++.|| .|+|| .|+..|+...|.
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~ 37 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELIN 37 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHH
Confidence 456677897 79999 599999987775
No 90
>KOG0030|consensus
Probab=85.43 E-value=1.3 Score=31.04 Aligned_cols=59 Identities=8% Similarity=0.022 Sum_probs=44.5
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhh--ccchhhHHHHHhhhcCC--CCCcccHHHHHHhc
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANF--MALEHCIAPFLNKCDAD--DDHLITLKEWARCL 66 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~--~~~e~c~~~f~~~cD~n--~Dg~ISl~Ew~~cl 66 (85)
.+=.|.-.|.+ +||.|+-+..-.+++.+ +|.+..+.+-+...+.+ +-.+||+++|.--+
T Consensus 13 ~ke~F~lfD~~-gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~ 75 (152)
T KOG0030|consen 13 FKEAFLLFDRT-GDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMY 75 (152)
T ss_pred HHHHHHHHhcc-CcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHH
Confidence 45578899999 99999999999888765 46677777777777765 45778888885443
No 91
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=85.39 E-value=1.2 Score=35.15 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=22.4
Q ss_pred chhhHHHHHhhhcCCCCCcccHHHHH
Q psy4163 38 LEHCIAPFLNKCDADDDHLITLKEWA 63 (85)
Q Consensus 38 ~e~c~~~f~~~cD~n~Dg~ISl~Ew~ 63 (85)
-+..+...++.||.|+||.||.+||.
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 34556788999999999999999995
No 92
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=85.23 E-value=1.6 Score=26.28 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=45.0
Q ss_pred hhchhcCCCCCCCcccHHhhHHHHHhh----ccchhhHHHHHhhhcCC----CCCcccHHHHHHhcCCCh
Q psy4163 9 TAFTASPAQHVGRSVSRHELFPIRANF----MALEHCIAPFLNKCDAD----DDHLITLKEWARCLELNE 70 (85)
Q Consensus 9 w~F~~LD~n~~Dg~L~~~EL~~~~~~~----~~~e~c~~~f~~~cD~n----~Dg~ISl~Ew~~clg~~~ 70 (85)
-.|.++ .. +.+++|..++..++... .....-++.++..+..+ ..+.+|+++|...|-=+.
T Consensus 4 ~if~~y-s~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 4 EIFRKY-SS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHH-CT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred HHHHHH-hC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 356666 45 67999999999998642 23567778888888654 579999999999884443
No 93
>KOG0030|consensus
Probab=84.69 E-value=2.6 Score=29.55 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=41.5
Q ss_pred chhcCCCCCCCcccHHhhHHHHHhh--ccchhhHHHHHhhhcCCCCCcccHHHHHHh
Q psy4163 11 FTASPAQHVGRSVSRHELFPIRANF--MALEHCIAPFLNKCDADDDHLITLKEWARC 65 (85)
Q Consensus 11 F~~LD~n~~Dg~L~~~EL~~~~~~~--~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~c 65 (85)
....|+. ++|+|.-.||+.++..+ ...+.-+...+.-- .|++|.|.++.|.+-
T Consensus 94 LrvFDke-g~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~ 148 (152)
T KOG0030|consen 94 LRVFDKE-GNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKH 148 (152)
T ss_pred HHhhccc-CCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHH
Confidence 3567999 99999999999988654 35666777777765 678899999998753
No 94
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=84.10 E-value=1.2 Score=27.79 Aligned_cols=28 Identities=7% Similarity=-0.008 Sum_probs=23.9
Q ss_pred hHhhhchhcCCCCCCCcccHHhhHHHHHh
Q psy4163 6 VKGTAFTASPAQHVGRSVSRHELFPIRAN 34 (85)
Q Consensus 6 v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~ 34 (85)
-+...|..+|.| +||.|+-+|...+...
T Consensus 52 ev~~m~~~~D~d-~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 52 EIAKLMEDLDRN-KDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHhcCC-CCCCCcHHHHHHHHHH
Confidence 356679999999 9999999999887765
No 95
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=83.18 E-value=1.4 Score=27.51 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=23.6
Q ss_pred hHHHHHhhhcCCCCC-cccHHHHHHhcCCC
Q psy4163 41 CIAPFLNKCDADDDH-LITLKEWARCLELN 69 (85)
Q Consensus 41 c~~~f~~~cD~n~Dg-~ISl~Ew~~clg~~ 69 (85)
.+..|-++.|.+++| .||.+|+..-++-.
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e 40 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTE 40 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHh
Confidence 456677779999987 99999999888664
No 96
>KOG0998|consensus
Probab=82.89 E-value=0.37 Score=41.40 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=53.7
Q ss_pred hchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCC
Q psy4163 10 AFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELN 69 (85)
Q Consensus 10 ~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~ 69 (85)
.|.+.|.+ ++|.|+-.+..++....+++..-+.+.-..+|..++|.|+++||+-.+.+-
T Consensus 288 if~q~d~~-~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 288 IFSQVDKD-NDGSISSNEARNIFLPFGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHhcccc-CCCcccccccccccccCCCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 58999999 999999999999988888888889999999999999999999998777653
No 97
>PF06584 DIRP: DIRP; InterPro: IPR010561 DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related pathway, which is encoded by multiple eukaryotic genomes and is present in proteins including lin-9 of Caenorhabditis elegans, aly of Drosophila melanogaster and mustard weed. Studies of lin-9 and aly of fruit fly proteins containing DIRP suggest that this domain might be involved in development. Aly, lin-9, act in parallel to, or downstream of, activation of MAPK by the RTK-Ras signalling pathway.
Probab=80.72 E-value=1.5 Score=29.04 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=26.1
Q ss_pred CCcccHHhhHHHHHhhccchhhHHHHHhh
Q psy4163 20 GRSVSRHELFPIRANFMALEHCIAPFLNK 48 (85)
Q Consensus 20 Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~ 48 (85)
-..|++.|+..++..++.+.+|...|++.
T Consensus 28 t~~ltR~eW~~IRr~mGKPRRfS~aF~~e 56 (109)
T PF06584_consen 28 TRKLTRVEWQKIRRSMGKPRRFSPAFLEE 56 (109)
T ss_pred CCccCHHHHHHHHHHcCCCCcCcHHHHHH
Confidence 34799999999999999999999999864
No 98
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=80.07 E-value=7 Score=25.01 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=36.1
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhh-------------ccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCCh
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANF-------------MALEHCIAPFLNKCDADDDHLITLKEWARCLELNE 70 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~-------------~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~ 70 (85)
++..|.++ .| ++|.++++-|..+++.. +..+.-++.-++.. .....|+..+|...+-..|
T Consensus 5 yRylFsli-sd-~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~eP 77 (90)
T PF09069_consen 5 YRYLFSLI-SD-SNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEP 77 (90)
T ss_dssp HHHHHHHH-S--TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--
T ss_pred HHHHHHHH-cC-CCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCC
Confidence 35678888 68 89999999999987643 22344445545443 4688899999999987764
No 99
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=78.70 E-value=2.8 Score=25.87 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=24.4
Q ss_pred chHhhhchhcCCCCCCCcccHHhhHHHHHh
Q psy4163 5 MVKGTAFTASPAQHVGRSVSRHELFPIRAN 34 (85)
Q Consensus 5 ~v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~ 34 (85)
.-+.-.|..+|.| +||.|+-+|+..++..
T Consensus 51 ~~v~~i~~~~D~d-~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 51 KAIDKIFEDLDTN-QDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHcCCC-CCCcCcHHHHHHHHHH
Confidence 3456679999999 9999999999888765
No 100
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=73.72 E-value=4.5 Score=19.35 Aligned_cols=17 Identities=12% Similarity=0.102 Sum_probs=8.7
Q ss_pred CCCCCCCcccHHhhHHHH
Q psy4163 15 PAQHVGRSVSRHELFPIR 32 (85)
Q Consensus 15 D~n~~Dg~L~~~EL~~~~ 32 (85)
|.| +||.++--.+.-+.
T Consensus 1 DvN-~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVN-GDGKVNAIDLALLK 17 (21)
T ss_dssp -TT-SSSSSSHHHHHHHH
T ss_pred CCC-CCCcCCHHHHHHHH
Confidence 455 66666655554443
No 101
>KOG0751|consensus
Probab=72.47 E-value=7.7 Score=32.54 Aligned_cols=55 Identities=9% Similarity=0.047 Sum_probs=41.9
Q ss_pred cCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCC
Q psy4163 14 SPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELN 69 (85)
Q Consensus 14 LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~ 69 (85)
-|.- +||.||-+|..-+...+-.+......-+..||..+.|.+|.+++...++-.
T Consensus 83 aD~t-KDglisf~eF~afe~~lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 83 ADQT-KDGLISFQEFRAFESVLCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred hhhc-ccccccHHHHHHHHhhccCchHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 3556 788888888887766655555666677888888888888888888887754
No 102
>KOG0169|consensus
Probab=70.77 E-value=7.4 Score=33.46 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=49.1
Q ss_pred hhchhcCCCCCCCcccHHhhHHHHHhhc--cchhhHHHHHhhhcCCCCCcccHHHHHH---hcCCCh
Q psy4163 9 TAFTASPAQHVGRSVSRHELFPIRANFM--ALEHCIAPFLNKCDADDDHLITLKEWAR---CLELNE 70 (85)
Q Consensus 9 w~F~~LD~n~~Dg~L~~~EL~~~~~~~~--~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~---clg~~~ 70 (85)
-+|.+.|+| ++|.++..|...+...++ ....-+...++.+|.-+++++...|+.+ +++..+
T Consensus 140 ~~~~~ad~~-~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp 205 (746)
T KOG0169|consen 140 SIFQEADKN-KNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP 205 (746)
T ss_pred HHHHHHccc-cccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc
Confidence 358999999 999999999999886543 4677788888999999999999888754 445554
No 103
>KOG1029|consensus
Probab=69.54 E-value=7 Score=34.34 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=47.1
Q ss_pred hchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcC
Q psy4163 10 AFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLE 67 (85)
Q Consensus 10 ~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg 67 (85)
+|.+|- |+.|++|-.--+.+.-.-++|..-+...-..-|+|+||++...||.-++.
T Consensus 21 qF~~Lk--p~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmk 76 (1118)
T KOG1029|consen 21 QFGQLK--PGQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMK 76 (1118)
T ss_pred HHhccC--CCCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHH
Confidence 477765 68899999999998766677888888888999999999999999966543
No 104
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=69.21 E-value=8.7 Score=21.19 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=25.3
Q ss_pred CcccHHhhHHHHHhhccchhhHHHHHhh
Q psy4163 21 RSVSRHELFPIRANFMALEHCIAPFLNK 48 (85)
Q Consensus 21 g~L~~~EL~~~~~~~~~~e~c~~~f~~~ 48 (85)
.+++..+...+...++.+...|..|+..
T Consensus 23 ~~p~~~~~~~la~~l~l~~~~V~~WF~n 50 (57)
T PF00046_consen 23 PYPSKEEREELAKELGLTERQVKNWFQN 50 (57)
T ss_dssp SSCHHHHHHHHHHHHTSSHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccCHHH
Confidence 7899999999999999999999999864
No 105
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=69.18 E-value=6.1 Score=23.22 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=21.4
Q ss_pred cccHHHHHHhcCCChhHHhhHHHHH
Q psy4163 56 LITLKEWARCLELNEDEIEDQCEDV 80 (85)
Q Consensus 56 ~ISl~Ew~~clg~~~~e~~~~~~~~ 80 (85)
-=|++|+|..++++.+++....+.+
T Consensus 20 ~~sLd~Lc~~~~id~~~l~~kL~~~ 44 (55)
T PF14056_consen 20 YSSLDELCYDYDIDKEELEEKLASI 44 (55)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHc
Confidence 3489999999999999998877664
No 106
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=69.01 E-value=3 Score=26.94 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=39.6
Q ss_pred CCCcccHHhhHHHHHhh----ccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCC
Q psy4163 19 VGRSVSRHELFPIRANF----MALEHCIAPFLNKCDADDDHLITLKEWARCLELN 69 (85)
Q Consensus 19 ~Dg~L~~~EL~~~~~~~----~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~ 69 (85)
-||.++..|+..+...+ ..+.......+..++.-....+++.+++..+.-.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 90 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDS 90 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHh
Confidence 47999999999877654 5567778888888988777789999999888764
No 107
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=68.07 E-value=11 Score=20.58 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=25.4
Q ss_pred CcccHHhhHHHHHhhccchhhHHHHHhh
Q psy4163 21 RSVSRHELFPIRANFMALEHCIAPFLNK 48 (85)
Q Consensus 21 g~L~~~EL~~~~~~~~~~e~c~~~f~~~ 48 (85)
.+.+..|+..+....+.++..|..||..
T Consensus 23 ~~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (59)
T cd00086 23 PYPSREEREELAKELGLTERQVKIWFQN 50 (59)
T ss_pred CCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6899999999999999999999999874
No 108
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=64.51 E-value=23 Score=24.13 Aligned_cols=55 Identities=13% Similarity=0.322 Sum_probs=37.3
Q ss_pred CcccHHhhHHHHHhhccchhhHHHHHhhhcCCCC-------CcccHHHHHHhcCCChhHHhhHH
Q psy4163 21 RSVSRHELFPIRANFMALEHCIAPFLNKCDADDD-------HLITLKEWARCLELNEDEIEDQC 77 (85)
Q Consensus 21 g~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~D-------g~ISl~Ew~~clg~~~~e~~~~~ 77 (85)
.-|+.+|++.+-.++ -+.-.+......=++.+ +.-++..|.++.|+.++.+..-|
T Consensus 26 ~eltqqeIr~lE~KL--vK~fSkQL~~K~k~~~~~~~~~l~~yP~l~~WL~vVgl~~~~i~~i~ 87 (129)
T PF13543_consen 26 SELTQQEIRTLEGKL--VKYFSKQLQCKAKVAERERAAELNSYPSLRQWLRVVGLRPESIQAIL 87 (129)
T ss_pred hHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCccCchhcccCCcHHHHhhhcCCCHHHHHHHH
Confidence 457777887776653 23334444444445555 67899999999999988876554
No 109
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=63.05 E-value=13 Score=20.14 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=20.4
Q ss_pred CCcccHHHHHHhcCCChhHHhhHHHHH
Q psy4163 54 DHLITLKEWARCLELNEDEIEDQCEDV 80 (85)
Q Consensus 54 Dg~ISl~Ew~~clg~~~~e~~~~~~~~ 80 (85)
||++|+.|-...+|+++..+.+....+
T Consensus 15 d~r~s~~~la~~lglS~~~v~~Ri~rL 41 (42)
T PF13404_consen 15 DGRRSYAELAEELGLSESTVRRRIRRL 41 (42)
T ss_dssp -TTS-HHHHHHHHTS-HHHHHHHHHHH
T ss_pred cCCccHHHHHHHHCcCHHHHHHHHHHh
Confidence 699999999999999988877766554
No 110
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=61.74 E-value=17 Score=22.39 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=39.9
Q ss_pred CCCcccHHhhHHHHHh----hccchhhHHHHHhhhcCCCCCcccHHHHHHhcCC
Q psy4163 19 VGRSVSRHELFPIRAN----FMALEHCIAPFLNKCDADDDHLITLKEWARCLEL 68 (85)
Q Consensus 19 ~Dg~L~~~EL~~~~~~----~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~ 68 (85)
.||.++..|..-+... ++.++.-....++.+..-.....++.+|.+-+.-
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5899999999887642 5677888888888888877777899999887653
No 111
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=59.94 E-value=8.3 Score=23.74 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=15.7
Q ss_pred ccHHHHHHhcCCChhHHh
Q psy4163 57 ITLKEWARCLELNEDEIE 74 (85)
Q Consensus 57 ISl~Ew~~clg~~~~e~~ 74 (85)
||++|||...|+.++.+.
T Consensus 1 is~~e~~~~~~i~~~~l~ 18 (84)
T PF13591_consen 1 ISLEEFCEACGIEPEFLR 18 (84)
T ss_pred CCHHHHHHHHCcCHHHHH
Confidence 799999999999987754
No 112
>COG3793 TerB Tellurite resistance protein [Inorganic ion transport and metabolism]
Probab=59.54 E-value=24 Score=24.58 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=44.0
Q ss_pred hcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhh-hc-CCCCCccc------HHHHHHhcCCChhHH
Q psy4163 13 ASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNK-CD-ADDDHLIT------LKEWARCLELNEDEI 73 (85)
Q Consensus 13 ~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~-cD-~n~Dg~IS------l~Ew~~clg~~~~e~ 73 (85)
++|.| ....+.|...+...++.+...++.++.. +. .+.||.++ +.|.|..||+.+.+.
T Consensus 77 ~~~~d---~~~gk~ea~~~I~~lk~d~e~Ae~vL~vAv~VA~aDG~~d~~E~avl~eI~~aLGL~p~~~ 142 (144)
T COG3793 77 SFDTD---FEIGKREAMKEIEDLKHDTEAAEDVLRVAVAVAEADGEFEAEERAVLREIAGALGLSPAEF 142 (144)
T ss_pred Hhhhh---hhhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCHHhc
Confidence 44544 5667778888888888888888888765 33 36899999 778999999987764
No 113
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=59.12 E-value=19 Score=19.47 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=24.3
Q ss_pred CcccHHhhHHHHHhhccchhhHHHHHhh
Q psy4163 21 RSVSRHELFPIRANFMALEHCIAPFLNK 48 (85)
Q Consensus 21 g~L~~~EL~~~~~~~~~~e~c~~~f~~~ 48 (85)
.+.+..++..+...++.+...|..||..
T Consensus 23 ~~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (56)
T smart00389 23 PYPSREEREELAAKLGLSERQVKVWFQN 50 (56)
T ss_pred CCCCHHHHHHHHHHHCcCHHHHHHhHHH
Confidence 3789999999999999999999999864
No 114
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=58.74 E-value=9 Score=24.79 Aligned_cols=31 Identities=6% Similarity=-0.078 Sum_probs=23.4
Q ss_pred hhchHhhhchhcCCCCCCCcccHHhhHHHHHh
Q psy4163 3 SSMVKGTAFTASPAQHVGRSVSRHELFPIRAN 34 (85)
Q Consensus 3 ~~~v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~ 34 (85)
|..++.=.+.--|.| +||+|+..|..-.++.
T Consensus 41 ~~~~L~~IW~LaD~~-~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 41 PRDVLAQIWNLADID-NDGKLDFEEFAIAMHL 71 (104)
T ss_dssp SHHHHHHHHHHH-SS-SSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHhhhcCC-CCCcCCHHHHHHHHHH
Confidence 345667777888999 9999999998865543
No 115
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=58.03 E-value=14 Score=20.98 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=21.7
Q ss_pred CCcccHHhhHHHHHhhccchhhHHHHHhhhcCC
Q psy4163 20 GRSVSRHELFPIRANFMALEHCIAPFLNKCDAD 52 (85)
Q Consensus 20 Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n 52 (85)
.|.++-.|+++... .+.+.+-++++++|..
T Consensus 8 ~~~itv~~~rd~lg---~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLLG---LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHHT---S-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHC---ccHHHHHHHHHHHhcc
Confidence 47777777776654 6788888888888874
No 116
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=53.73 E-value=16 Score=21.75 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.3
Q ss_pred CCCcccHHHHHHhcCCChhHHhhHHHHHhccC
Q psy4163 53 DDHLITLKEWARCLELNEDEIEDQCEDVRNDD 84 (85)
Q Consensus 53 ~Dg~ISl~Ew~~clg~~~~e~~~~~~~~~~~~ 84 (85)
..|.|++.+-..-||++ ..+...|++.|
T Consensus 19 ~~g~i~lkdIA~~Lgvs----~~tIr~WK~~d 46 (60)
T PF10668_consen 19 SNGKIKLKDIAEKLGVS----ESTIRKWKSRD 46 (60)
T ss_pred hCCCccHHHHHHHHCCC----HHHHHHHhhhc
Confidence 58899999999999999 66666777665
No 117
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=53.45 E-value=28 Score=21.14 Aligned_cols=53 Identities=11% Similarity=0.074 Sum_probs=37.8
Q ss_pred CCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCChh
Q psy4163 18 HVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELNED 71 (85)
Q Consensus 18 ~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~ 71 (85)
|..-+++-.-|.+......+ ..-..-....|+.=+.++||.+||.+-+-.-.+
T Consensus 4 P~sp~~~F~~L~~~l~~~l~-~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 4 PTSPWMPFPMLFSALSKHLP-PSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CCCCcccHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 56667777778877776544 334666777777778999999999887754333
No 118
>KOG1954|consensus
Probab=51.30 E-value=26 Score=28.70 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=39.3
Q ss_pred CCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHh
Q psy4163 18 HVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARC 65 (85)
Q Consensus 18 ~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~c 65 (85)
|-||+||-.--+.-+...+++-.-+-+.-+.-|.|+||.+.-+||.-+
T Consensus 455 p~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 455 PVNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred ccCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 577999988777766666677777888889999999999999999643
No 119
>KOG0040|consensus
Probab=51.13 E-value=19 Score=34.10 Aligned_cols=30 Identities=17% Similarity=0.438 Sum_probs=24.2
Q ss_pred cchhhHHHH---HhhhcCCCCCcccHHHHHHhc
Q psy4163 37 ALEHCIAPF---LNKCDADDDHLITLKEWARCL 66 (85)
Q Consensus 37 ~~e~c~~~f---~~~cD~n~Dg~ISl~Ew~~cl 66 (85)
.+|..++.| +++||.+++|.++..+|..||
T Consensus 2247 VtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCL 2279 (2399)
T KOG0040|consen 2247 VTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCL 2279 (2399)
T ss_pred CCHHHHHHHHHHHHHhchhhccCCcHHHHHHHH
Confidence 344444443 789999999999999999998
No 120
>KOG1707|consensus
Probab=49.62 E-value=16 Score=30.83 Aligned_cols=28 Identities=14% Similarity=0.026 Sum_probs=23.6
Q ss_pred HhhhchhcCCCCCCCcccHHhhHHHHHhh
Q psy4163 7 KGTAFTASPAQHVGRSVSRHELFPIRANF 35 (85)
Q Consensus 7 ~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~ 35 (85)
+.=.|...|.| +||-|+..||..+-...
T Consensus 317 l~~~f~~~D~d-~Dg~L~p~El~~LF~~~ 344 (625)
T KOG1707|consen 317 LVDVFEKFDRD-NDGALSPEELKDLFSTA 344 (625)
T ss_pred HHHHHHhccCC-CCCCcCHHHHHHHhhhC
Confidence 34569999999 99999999999887643
No 121
>KOG0041|consensus
Probab=47.23 E-value=20 Score=26.85 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=23.1
Q ss_pred HHHHHhhhcCCCCCcccHHHH---HHhcCCChh
Q psy4163 42 IAPFLNKCDADDDHLITLKEW---ARCLELNED 71 (85)
Q Consensus 42 ~~~f~~~cD~n~Dg~ISl~Ew---~~clg~~~~ 71 (85)
+...++.+|.+.||.|++.|- ..-||.++.
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQT 133 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLGAPQT 133 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhCCchh
Confidence 345788999999999999997 445666643
No 122
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=47.18 E-value=45 Score=25.41 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=17.1
Q ss_pred CCcccHHhhHHHHHhh--ccchhhHHHHHhhhc
Q psy4163 20 GRSVSRHELFPIRANF--MALEHCIAPFLNKCD 50 (85)
Q Consensus 20 Dg~L~~~EL~~~~~~~--~~~e~c~~~f~~~cD 50 (85)
.|.+||+|-..++... ..++..++.|+++.+
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg 332 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG 332 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC
Confidence 4777777776666542 223344555555443
No 123
>TIGR01439 lp_hng_hel_AbrB looped-hinge helix DNA binding domain, AbrB family. This DNA-binding domain family includes AbrB, a transition state regulator in Bacillus subtilis, whose DNA-binding domain structure in solution was determined by NMR. The domain binds DNA as a dimer in what is termed a looped-hinge helix fold. Some members of the family have two copies of the domain in tandem. The domain is found usually at the N-terminus of a small protein. This model excludes members of family TIGR02609.
Probab=45.72 E-value=12 Score=19.44 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=17.4
Q ss_pred CCCCCcccH-HHHHHhcCCChhH
Q psy4163 51 ADDDHLITL-KEWARCLELNEDE 72 (85)
Q Consensus 51 ~n~Dg~ISl-~Ew~~clg~~~~e 72 (85)
.+..|+|++ .+|..-|++.+++
T Consensus 3 i~~kgri~iP~~~r~~l~~~~gd 25 (43)
T TIGR01439 3 VDKKGQIVIPKEIREKLGLKEGD 25 (43)
T ss_pred ECcCCeEEecHHHHHHcCcCCCC
Confidence 366889998 8999999887554
No 124
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=43.99 E-value=46 Score=18.03 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=23.0
Q ss_pred CCcccHHHHHHhcCCChhHHhhHHHHHhc
Q psy4163 54 DHLITLKEWARCLELNEDEIEDQCEDVRN 82 (85)
Q Consensus 54 Dg~ISl~Ew~~clg~~~~e~~~~~~~~~~ 82 (85)
++.||..|...-||++..-+.+....++.
T Consensus 13 ~~~it~~eLa~~l~vS~rTi~~~i~~L~~ 41 (55)
T PF08279_consen 13 KEPITAKELAEELGVSRRTIRRDIKELRE 41 (55)
T ss_dssp TTSBEHHHHHHHCTS-HHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44599999999999998888887777754
No 125
>KOG0042|consensus
Probab=42.66 E-value=32 Score=29.24 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=47.7
Q ss_pred hhchhcCCCCCCCcccHHhhHHHHHhh--ccchhhHHHHHhhhcCCCCCcccHHHHHHhc
Q psy4163 9 TAFTASPAQHVGRSVSRHELFPIRANF--MALEHCIAPFLNKCDADDDHLITLKEWARCL 66 (85)
Q Consensus 9 w~F~~LD~n~~Dg~L~~~EL~~~~~~~--~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~cl 66 (85)
-.|..||.| +-|+.+-..+....... +-++.-...-++.-|.+..|.+++.||..-.
T Consensus 597 ~rf~~lD~~-k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~ 655 (680)
T KOG0042|consen 597 TRFAFLDAD-KKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLM 655 (680)
T ss_pred HHHHhhcch-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHH
Confidence 569999999 88999988888777653 4678888899999999999999999986544
No 126
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=42.30 E-value=65 Score=21.51 Aligned_cols=46 Identities=15% Similarity=-0.001 Sum_probs=36.1
Q ss_pred CCCcccHHhhHHHHHhh-----------ccchhhHHHHHhhhcCCCCCc-ccHHHHHH
Q psy4163 19 VGRSVSRHELFPIRANF-----------MALEHCIAPFLNKCDADDDHL-ITLKEWAR 64 (85)
Q Consensus 19 ~Dg~L~~~EL~~~~~~~-----------~~~e~c~~~f~~~cD~n~Dg~-ISl~Ew~~ 64 (85)
+|..||.+|+..+.... ..++.-+++..+.+...+.+. +|+.|..+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr 137 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALR 137 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHH
Confidence 57889999999998653 256778888888888866664 99988765
No 127
>PF03374 ANT: Phage antirepressor protein KilAC domain; InterPro: IPR005039 This entry is represented by Bacteriophage P1, Ant1 C-terminal domain, which represents the processed Ant2 chain. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Prophages P1 and P7 exist as unit copy DNA plasmids in the bacterial cell. Maintenance of the prophage state requires the continuous expression of two repressors: (i) C1 is a protein which negatively regulates the expression of lytic genes including the C1 inactivator gene coi, and (ii) C4 is an antisense RNA which specifically inhibits the synthesis of an anti-repressor Ant.; GO: 0003677 DNA binding
Probab=41.63 E-value=29 Score=21.74 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=20.8
Q ss_pred CCCCCcccHHHHHHhcCCChhHHhh
Q psy4163 51 ADDDHLITLKEWARCLELNEDEIED 75 (85)
Q Consensus 51 ~n~Dg~ISl~Ew~~clg~~~~e~~~ 75 (85)
++.+|.+|+.++++-||+.+..+..
T Consensus 19 ~~~~~~~ti~~~AK~L~i~~~~l~~ 43 (111)
T PF03374_consen 19 VDSDGLYTIREAAKLLGIGRNKLFQ 43 (111)
T ss_pred HcCCCCccHHHHHHHhCCCHHHHHH
Confidence 4557999999999999999777644
No 128
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=41.32 E-value=35 Score=22.81 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=26.2
Q ss_pred CCcccHHHHHHhcCCChhHHhhHHHHHhcc
Q psy4163 54 DHLITLKEWARCLELNEDEIEDQCEDVRND 83 (85)
Q Consensus 54 Dg~ISl~Ew~~clg~~~~e~~~~~~~~~~~ 83 (85)
||++|..|-.+-+|+++..+.+....+...
T Consensus 21 d~R~s~~eiA~~lglS~~tV~~Ri~rL~~~ 50 (153)
T PRK11179 21 NARTPYAELAKQFGVSPGTIHVRVEKMKQA 50 (153)
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 699999999999999998888888777654
No 129
>KOG3077|consensus
Probab=41.03 E-value=52 Score=24.99 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=38.1
Q ss_pred cchhhHHHHHhhhcCCCCCcc---cHHHHHHhcCCChhHHhhHHHHHh
Q psy4163 37 ALEHCIAPFLNKCDADDDHLI---TLKEWARCLELNEDEIEDQCEDVR 81 (85)
Q Consensus 37 ~~e~c~~~f~~~cD~n~Dg~I---Sl~Ew~~clg~~~~e~~~~~~~~~ 81 (85)
-...|.+-|.++.|+.-+..| .+.-||+-||+.++++..-+-||.
T Consensus 62 s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwk 109 (260)
T KOG3077|consen 62 SEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWK 109 (260)
T ss_pred cHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 467788889999999876555 467899999999999999999986
No 130
>KOG1707|consensus
Probab=41.00 E-value=33 Score=29.10 Aligned_cols=31 Identities=19% Similarity=0.509 Sum_probs=24.0
Q ss_pred hhhH---HHHHhhhcCCCCCcccHHHH----HHhcCCC
Q psy4163 39 EHCI---APFLNKCDADDDHLITLKEW----ARCLELN 69 (85)
Q Consensus 39 e~c~---~~f~~~cD~n~Dg~ISl~Ew----~~clg~~ 69 (85)
..|+ .+.++.||.|.||-+|=.|- ..||+.+
T Consensus 191 p~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~p 228 (625)
T KOG1707|consen 191 PRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTP 228 (625)
T ss_pred HHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCC
Confidence 4554 45778899999999997776 6788876
No 131
>TIGR03488 cas_Cas5p CRISPR-associated protein, Cas5p family. CC Members of this protein family are cas, or CRISPR-associated, proteins. The two sequences in the alignment seed are found within cas gene clusters that are adjacent to CRISPR DNA repeats in two members of the order Bacteroidales, Porphyromonas gingivalis W83 and Bacteroides forsythus ATCC 43037. This cas protein family is unique to the Pgingi (Porphyromonas gingivalis) subtype, but shows some sequence similarity to genes of the Cas5 type (see TIGR02593).
Probab=38.65 E-value=21 Score=26.20 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=41.0
Q ss_pred hHhhhchhcCCCCCCCcccHHhhHHHHHhhcc-------chhhHHHHHhhhcCCCCCcccHHH-------HHHhcCCC
Q psy4163 6 VKGTAFTASPAQHVGRSVSRHELFPIRANFMA-------LEHCIAPFLNKCDADDDHLITLKE-------WARCLELN 69 (85)
Q Consensus 6 v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~-------~e~c~~~f~~~cD~n~Dg~ISl~E-------w~~clg~~ 69 (85)
|++|.|..-|+ .+-.+|+..++.+.+. .--.+--.+.+||++.-..|+.+| |.+|+...
T Consensus 55 vlgwh~~~kdr-----~~i~kdie~irkk~k~~~~~~t~~s~fipll~dffdl~~~~~i~~~~~~ffndlwkr~frr~ 127 (237)
T TIGR03488 55 VLGWHFDRKDR-----EAIQKDIEKIRKKQKKGHIPNTIGSIFIPLLMDFFDLDDQPIIDFDEPCFFNDLWKRAFRRA 127 (237)
T ss_pred hhhcccchhhH-----HHHHHHHHHHHHhcccCCCCCcccceehHHHHHHhhcccccccccCCcchHhHHHHHHHhhc
Confidence 88999976554 4677889998865321 112355578899998888888776 66776543
No 132
>KOG2243|consensus
Probab=38.55 E-value=73 Score=30.93 Aligned_cols=62 Identities=11% Similarity=0.253 Sum_probs=46.6
Q ss_pred hchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhc-CCCCCcccHHHHHHhcCCChhH
Q psy4163 10 AFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCD-ADDDHLITLKEWARCLELNEDE 72 (85)
Q Consensus 10 ~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD-~n~Dg~ISl~Ew~~clg~~~~e 72 (85)
.|..+|-| +.|.||+++....+...+....---.|+-+|- +|.+....+++|..-|--+..+
T Consensus 4062 tfkeydpd-gkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rfhepakd 4124 (5019)
T KOG2243|consen 4062 TFKEYDPD-GKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEPAKD 4124 (5019)
T ss_pred cchhcCCC-CCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHhcCchhh
Confidence 58899999 99999999999988776554444446777775 4777888999998877544333
No 133
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=38.16 E-value=65 Score=18.69 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=36.5
Q ss_pred CCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCC
Q psy4163 19 VGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELN 69 (85)
Q Consensus 19 ~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~ 69 (85)
..|+||.+|...+..... +..-+..|++.... -|.=....||.+|.-.
T Consensus 24 ~~~vlt~~e~~~i~~~~~-~~~k~~~Lld~l~~--kg~~af~~F~~~L~~~ 71 (80)
T cd01671 24 SDGVLTEEEYEKIRSEST-RQDKARKLLDILPR--KGPKAFQSFLQALQET 71 (80)
T ss_pred HcCCCCHHHHHHHHcCCC-hHHHHHHHHHHHHh--cChHHHHHHHHHHHhc
Confidence 358999999999887644 56667888888876 5666778888888654
No 134
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=37.66 E-value=63 Score=19.79 Aligned_cols=46 Identities=7% Similarity=0.020 Sum_probs=35.9
Q ss_pred CCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcC
Q psy4163 19 VGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLE 67 (85)
Q Consensus 19 ~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg 67 (85)
.+|+||.+|...+.... .+...++.++...-. -|.....-|+.+|.
T Consensus 26 ~~~Vit~e~~~~I~a~~-T~~~kar~Lld~l~~--kG~~A~~~F~~~L~ 71 (82)
T cd08330 26 GKKVITQEQYSEVRAEK-TNQEKMRKLFSFVRS--WGASCKDIFYQILR 71 (82)
T ss_pred HCCCCCHHHHHHHHcCC-CcHHHHHHHHHHHHc--cCHHHHHHHHHHHH
Confidence 45899999999988754 456667777777554 78899999999985
No 135
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=37.22 E-value=22 Score=24.26 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=14.3
Q ss_pred CCCcccHHHHHHhcCCC
Q psy4163 53 DDHLITLKEWARCLELN 69 (85)
Q Consensus 53 ~Dg~ISl~Ew~~clg~~ 69 (85)
.+|.||..||.+.|+.+
T Consensus 41 rng~IsVreFVr~La~S 57 (131)
T PF00427_consen 41 RNGQISVREFVRALAKS 57 (131)
T ss_dssp HTTSS-HHHHHHHHHTS
T ss_pred HcCCCcHHHHHHHHHcC
Confidence 38999999999999887
No 136
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=35.93 E-value=72 Score=24.16 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=22.8
Q ss_pred HHHHhhhcCCCCCcccHHHHHHhcCCChhHHhh
Q psy4163 43 APFLNKCDADDDHLITLKEWARCLELNEDEIED 75 (85)
Q Consensus 43 ~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~e~~~ 75 (85)
++.++..+.| ||++|..+-+.-+|++..-++.
T Consensus 186 ~~IL~~L~~~-egrlse~eLAerlGVSRs~ire 217 (251)
T TIGR02787 186 EHIFEELDGN-EGLLVASKIADRVGITRSVIVN 217 (251)
T ss_pred HHHHHHhccc-cccccHHHHHHHHCCCHHHHHH
Confidence 4445554443 7999999999999999544443
No 137
>KOG4347|consensus
Probab=35.72 E-value=46 Score=28.49 Aligned_cols=54 Identities=9% Similarity=0.003 Sum_probs=39.9
Q ss_pred hHhhhchhcCCCCCCCcccHHhhHHHHHhhc--cchhhHHHHHhhhcCCCCCcccHHH
Q psy4163 6 VKGTAFTASPAQHVGRSVSRHELFPIRANFM--ALEHCIAPFLNKCDADDDHLITLKE 61 (85)
Q Consensus 6 v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~--~~e~c~~~f~~~cD~n~Dg~ISl~E 61 (85)
.+...|..+|.+ ++|.||-++|..-+..+. ...+-++=|.+.+|+++| ..-.+|
T Consensus 556 ~~~rlF~l~D~s-~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 556 FLERLFRLLDDS-MTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHHHHHhcccC-CcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 456779999999 999999999988665432 334446778889998877 555444
No 138
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=34.69 E-value=22 Score=25.52 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=19.2
Q ss_pred HHHHhhhcCCCCCcccHHHH---HHhcCCC
Q psy4163 43 APFLNKCDADDDHLITLKEW---ARCLELN 69 (85)
Q Consensus 43 ~~f~~~cD~n~Dg~ISl~Ew---~~clg~~ 69 (85)
++=+..||.|+||.|+.-|= .+.||..
T Consensus 10 QqHvaFFDrd~DGiI~P~dTy~GFraLGf~ 39 (174)
T PF05042_consen 10 QQHVAFFDRDKDGIIYPWDTYQGFRALGFG 39 (174)
T ss_pred hhhhceeCCCCCeeECHHHHHHHHHHhCCC
Confidence 44456899999999998774 3445554
No 139
>KOG1157|consensus
Probab=34.26 E-value=9 Score=31.41 Aligned_cols=69 Identities=12% Similarity=0.091 Sum_probs=50.5
Q ss_pred chhchHhhhchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCChhHHhh
Q psy4163 2 FSSMVKGTAFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIED 75 (85)
Q Consensus 2 ~~~~v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~e~~~ 75 (85)
|||.--.--|+.+|+| ++|-+.-.++.+- ..++.++-- .-...-|.+.+|..+-++|.. ++++.++++.
T Consensus 435 ~~s~~~d~~f~~~~~~-~~~~~~~~~~ie~-e~m~~~~~~--e~~~~~d~~s~~~~~s~~~~~-~~~~~e~lr~ 503 (543)
T KOG1157|consen 435 FPSHQEDCPFSYKPKN-GQGGPVYVIVIEN-EKMGVQEFP--EMSTVSDLLSRAGPGSSRWSM-YQIPAEELRP 503 (543)
T ss_pred CCCccccCceeecCCC-CCCCceEEEEeec-cccCCCCCc--hhhhHHHhhccCCCCccchhh-hcCcHHHhhh
Confidence 5666666779999999 9999988888776 333322221 556788999999999999965 5666666654
No 140
>PRK13503 transcriptional activator RhaS; Provisional
Probab=34.20 E-value=70 Score=22.59 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=30.6
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHhcCCChhHHhhHHHH
Q psy4163 42 IAPFLNKCDADDDHLITLKEWARCLELNEDEIEDQCED 79 (85)
Q Consensus 42 ~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~e~~~~~~~ 79 (85)
+.+++++...+=...||++++++-+|+++.-+.+-+.+
T Consensus 173 i~~~~~~I~~~~~~~~tl~~lA~~~~lS~~~l~r~Fk~ 210 (278)
T PRK13503 173 LNQLLAWLEDHFAEEVNWEALADQFSLSLRTLHRQLKQ 210 (278)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 66677777777778999999999999998877665543
No 141
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=34.06 E-value=29 Score=22.82 Aligned_cols=18 Identities=17% Similarity=0.660 Sum_probs=14.5
Q ss_pred CCCcccHHHHHHhcCCCh
Q psy4163 53 DDHLITLKEWARCLELNE 70 (85)
Q Consensus 53 ~Dg~ISl~Ew~~clg~~~ 70 (85)
.||.++...|..|.|+..
T Consensus 41 ~dG~L~rs~Fg~CIGM~d 58 (100)
T PF08414_consen 41 KDGLLPRSDFGECIGMKD 58 (100)
T ss_dssp BTTBEEGGGHHHHHT--S
T ss_pred cCCcccHHHHHHhcCCcc
Confidence 399999999999999984
No 142
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=33.90 E-value=93 Score=20.15 Aligned_cols=42 Identities=7% Similarity=0.168 Sum_probs=26.8
Q ss_pred CCCcccHHhh-HHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHH
Q psy4163 19 VGRSVSRHEL-FPIRANFMALEHCIAPFLNKCDADDDHLITLKEWA 63 (85)
Q Consensus 19 ~Dg~L~~~EL-~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~ 63 (85)
-||+|+..+. ..+.+.....+.-+..+.+..- .|.|++.++.
T Consensus 6 ~DgTl~~~~s~~~~~~~~~~~~~~~~~~~~~~~---~g~i~~~~~~ 48 (177)
T TIGR01488 6 FDGTLTRQDSLIDLLAKLLGTNDEVIELTRLAP---SGRISFEDAL 48 (177)
T ss_pred CccccccchhhHHHHHHHhCChHHHHHHHHHHH---CCCCCHHHHH
Confidence 4599999888 5565554443333445555553 3788888886
No 143
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=33.74 E-value=12 Score=19.52 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=13.8
Q ss_pred HHHHhhhcCCCCCcccHH
Q psy4163 43 APFLNKCDADDDHLITLK 60 (85)
Q Consensus 43 ~~f~~~cD~n~Dg~ISl~ 60 (85)
+..++.=|+|+|-.||.+
T Consensus 2 ~~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 2 RSLLEQEDTDGNFQITIE 19 (30)
T ss_pred hhHhhccccCCCcEEEEe
Confidence 356677799999999864
No 144
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=33.54 E-value=64 Score=18.91 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=34.4
Q ss_pred CCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCC
Q psy4163 20 GRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELN 69 (85)
Q Consensus 20 Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~ 69 (85)
.|+||..|...+.. ...+...++.+++..-. -|.=....|+.+|.-.
T Consensus 28 ~~vlt~~e~e~I~~-~~t~~~k~~~LLd~l~~--kg~~a~~~F~~~L~~~ 74 (85)
T PF00619_consen 28 RGVLTEEEYEEIRS-EPTRQDKARKLLDILKR--KGPEAFDIFCQALREN 74 (85)
T ss_dssp TTSSSHHHHHHHHT-SSSHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHc-cCChHHHHHHHHHHHHH--HCHHHHHHHHHHHHhh
Confidence 48999999999887 34455568888888554 5556678888887653
No 145
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=33.31 E-value=46 Score=20.23 Aligned_cols=33 Identities=6% Similarity=-0.106 Sum_probs=21.3
Q ss_pred CCCcccHHhhHHHHHhhccchhhHHHHHhhhcC
Q psy4163 19 VGRSVSRHELFPIRANFMALEHCIAPFLNKCDA 51 (85)
Q Consensus 19 ~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~ 51 (85)
..|+||..||..++.....+...+..++..+..
T Consensus 18 ~~G~lT~~eI~~~L~~~~~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDDLDPEQIDEIYDTLED 50 (82)
T ss_dssp HHSS-BHHHHHHH-S-S---HHHHHHHHHHHHT
T ss_pred hcCcCCHHHHHHHcCccCCCHHHHHHHHHHHHH
Confidence 358999999999887666777778888777754
No 146
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=32.80 E-value=8.9 Score=23.35 Aligned_cols=41 Identities=24% Similarity=0.125 Sum_probs=25.9
Q ss_pred hhhchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcC
Q psy4163 8 GTAFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDA 51 (85)
Q Consensus 8 ~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~ 51 (85)
.=.|..| .+ +-++||..||+..+..-.. +-|+.+.-.+-++
T Consensus 9 ~~aFr~l-A~-~KpyVT~~dLr~~l~pe~a-ey~~~~Mp~~~~~ 49 (69)
T PF08726_consen 9 EEAFRAL-AG-GKPYVTEEDLRRSLTPEQA-EYCISRMPPYEGP 49 (69)
T ss_dssp HHHHHHH-CT-SSSCEEHHHHHHHS-CCCH-HHHHCCSEC--SS
T ss_pred HHHHHHH-Hc-CCCcccHHHHHHHcCcHHH-HHHHHHCcccCCC
Confidence 3468888 67 7799999999986554333 5565554444444
No 147
>PF07900 DUF1670: Protein of unknown function (DUF1670); InterPro: IPR012872 The hypothetical eukaryotic proteins found in this family are of unknown function.
Probab=31.75 E-value=1.3e+02 Score=22.27 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=45.4
Q ss_pred ccHHhhHHHHHhhccchhhHHHHHhhhcC--CCCCcccHHHHHHhcCCChhHHhhHHHHHhcc
Q psy4163 23 VSRHELFPIRANFMALEHCIAPFLNKCDA--DDDHLITLKEWARCLELNEDEIEDQCEDVRND 83 (85)
Q Consensus 23 L~~~EL~~~~~~~~~~e~c~~~f~~~cD~--n~Dg~ISl~Ew~~clg~~~~e~~~~~~~~~~~ 83 (85)
++.+++.......+..+--..+.++.|.. +++|.+|...-..-||+++.-+....+++.++
T Consensus 70 ~~~ED~e~~~~~~~~~elr~~rIvRl~~EAy~QgglLT~~Dla~LL~~S~~TI~~~i~~yq~e 132 (220)
T PF07900_consen 70 VDPEDIEMRNEKYGLSELRKHRIVRLTNEAYDQGGLLTQEDLAMLLGISPRTISKDIKEYQKE 132 (220)
T ss_pred cCHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34555555444445555555666666665 78999999999999999999999888888765
No 148
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=30.74 E-value=63 Score=20.87 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=21.2
Q ss_pred CCcccHHHHHHhcCCChhHHhhHHHHH
Q psy4163 54 DHLITLKEWARCLELNEDEIEDQCEDV 80 (85)
Q Consensus 54 Dg~ISl~Ew~~clg~~~~e~~~~~~~~ 80 (85)
.|.||.+|=|+-.+++++|+..=-.++
T Consensus 47 ~Glis~~EA~~rY~Ls~eEf~~W~~av 73 (90)
T PF06627_consen 47 GGLISVEEACRRYGLSEEEFESWQRAV 73 (90)
T ss_dssp CTTS-HHHHHHCTTSSHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 799999999999999999986544443
No 149
>PF05901 Excalibur: Excalibur calcium-binding domain; InterPro: IPR008613 Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognised and the evolution of EF-hand-like domains is probably more complex than previously appreciated [].
Probab=30.23 E-value=26 Score=18.51 Aligned_cols=9 Identities=0% Similarity=-0.326 Sum_probs=7.4
Q ss_pred hcCCCCCCCc
Q psy4163 13 ASPAQHVGRS 22 (85)
Q Consensus 13 ~LD~n~~Dg~ 22 (85)
.||.| +||+
T Consensus 26 ~LDrD-~DGi 34 (37)
T PF05901_consen 26 KLDRD-GDGI 34 (37)
T ss_pred cccCC-CCCC
Confidence 68888 8886
No 150
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=30.10 E-value=1.2e+02 Score=22.84 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=39.2
Q ss_pred CCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCChhHHhhHHHHHhccC
Q psy4163 16 AQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIEDQCEDVRNDD 84 (85)
Q Consensus 16 ~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~e~~~~~~~~~~~~ 84 (85)
.| |..+||++.|..-... .+.. ..|+|++.|-...|+++..-+++...++-+.+
T Consensus 45 ~d-GkeyiT~~~L~~EI~~-------------el~~-~gGRv~~~dL~~~LnVd~~~ie~~~~~i~~~~ 98 (272)
T PF09743_consen 45 TD-GKEYITPEQLEKEIKD-------------ELYV-HGGRVNLVDLAQALNVDLDHIERRAQEIVKSD 98 (272)
T ss_pred CC-CCEEECHHHHHHHHHH-------------HHHH-cCCceEHHHHHHhcCcCHHHHHHHHHHHHhCC
Confidence 35 6788888877764442 2222 36999999999999999888887777765544
No 151
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=30.07 E-value=92 Score=17.49 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=24.9
Q ss_pred CCCCcccHHHHHHhcCCChhHHhhHHHHHhc
Q psy4163 52 DDDHLITLKEWARCLELNEDEIEDQCEDVRN 82 (85)
Q Consensus 52 n~Dg~ISl~Ew~~clg~~~~e~~~~~~~~~~ 82 (85)
...|.+|..|.+.-||+++.-+++-...+-+
T Consensus 10 ~~~~~~s~~ela~~~~VS~~TiRRDl~~L~~ 40 (57)
T PF08220_consen 10 KEKGKVSVKELAEEFGVSEMTIRRDLNKLEK 40 (57)
T ss_pred HHcCCEEHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3468899999999999998888777766644
No 152
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=29.81 E-value=58 Score=17.38 Aligned_cols=17 Identities=6% Similarity=0.454 Sum_probs=13.0
Q ss_pred ccHHHHHHhcCCChhHH
Q psy4163 57 ITLKEWARCLELNEDEI 73 (85)
Q Consensus 57 ISl~Ew~~clg~~~~e~ 73 (85)
+|-+||-.+||++.+|.
T Consensus 2 Lsd~dF~~vFgm~~~eF 18 (36)
T PF02209_consen 2 LSDEDFEKVFGMSREEF 18 (36)
T ss_dssp S-HHHHHHHHSS-HHHH
T ss_pred cCHHHHHHHHCCCHHHH
Confidence 67889999999998875
No 153
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=29.56 E-value=77 Score=17.31 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=13.7
Q ss_pred CCCcccHHhhHHHHHh
Q psy4163 19 VGRSVSRHELFPIRAN 34 (85)
Q Consensus 19 ~Dg~L~~~EL~~~~~~ 34 (85)
....|++.||+.+++.
T Consensus 21 d~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 21 DKDTLSKKELKELLEK 36 (44)
T ss_dssp STTSEEHHHHHHHHHH
T ss_pred CCCeEcHHHHHHHHHH
Confidence 3689999999999875
No 154
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=29.55 E-value=28 Score=19.97 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=11.5
Q ss_pred CCCcccHHHHHHhcC
Q psy4163 53 DDHLITLKEWARCLE 67 (85)
Q Consensus 53 ~Dg~ISl~Ew~~clg 67 (85)
.+|.||.+||-.-++
T Consensus 20 a~GrL~~~Ef~~R~~ 34 (53)
T PF08044_consen 20 AEGRLSLDEFDERLD 34 (53)
T ss_pred HCCCCCHHHHHHHHH
Confidence 489999999965443
No 155
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=29.05 E-value=90 Score=15.92 Aligned_cols=15 Identities=13% Similarity=0.390 Sum_probs=11.1
Q ss_pred CCcccHHhhHHHHHh
Q psy4163 20 GRSVSRHELFPIRAN 34 (85)
Q Consensus 20 Dg~L~~~EL~~~~~~ 34 (85)
.|.|++.|+......
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 577888888877654
No 156
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=28.94 E-value=1.2e+02 Score=19.57 Aligned_cols=16 Identities=6% Similarity=-0.016 Sum_probs=7.1
Q ss_pred cccHHHHHHhcCCChh
Q psy4163 56 LITLKEWARCLELNED 71 (85)
Q Consensus 56 ~ISl~Ew~~clg~~~~ 71 (85)
.+|++|.+.-+|+.+.
T Consensus 25 ~~sl~~lA~~~g~S~~ 40 (127)
T PRK11511 25 PLSLEKVSERSGYSKW 40 (127)
T ss_pred CCCHHHHHHHHCcCHH
Confidence 3444444444444433
No 157
>KOG0998|consensus
Probab=28.93 E-value=27 Score=30.29 Aligned_cols=62 Identities=10% Similarity=0.140 Sum_probs=54.6
Q ss_pred hHhhhchhcCCCCCCCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCC
Q psy4163 6 VKGTAFTASPAQHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLEL 68 (85)
Q Consensus 6 v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~ 68 (85)
+..-.|..+|.. ++|.++-.|-..+....+++..-+-..-.++|..+-|.....+|-.+|.+
T Consensus 12 ~~~~~~~~~d~~-~~G~i~g~~a~~f~~~s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrl 73 (847)
T KOG0998|consen 12 LFDQYFKSADPQ-GDGRITGAEAVAFLSKSGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRL 73 (847)
T ss_pred hHHHhhhccCcc-cCCcccHHHhhhhhhccccchhhhhccccccccccCCccccccccccchH
Confidence 345578999999 99999999999999988888888888889999998899999999888754
No 158
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=28.92 E-value=1.3e+02 Score=17.67 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=28.5
Q ss_pred hhhHHHHHhhhcCCCCCcccHHHHHHhcCCChhHHhhHHHHHhc
Q psy4163 39 EHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIEDQCEDVRN 82 (85)
Q Consensus 39 e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~e~~~~~~~~~~ 82 (85)
++++..+.+.+ ..||+++-...|+++.++++.-+..+-+
T Consensus 12 ~~~l~~l~~~y-----~~i~~~~i~~~~~l~~~~vE~~i~~~i~ 50 (88)
T smart00088 12 LTNLLQLSEPY-----SSISLSDLAKLLGLSVPEVEKLVSKAIR 50 (88)
T ss_pred HHHHHHHhHHh-----ceeeHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 44555555554 4499999999999999988776665543
No 159
>smart00753 PAM PCI/PINT associated module.
Probab=28.92 E-value=1.3e+02 Score=17.67 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=28.5
Q ss_pred hhhHHHHHhhhcCCCCCcccHHHHHHhcCCChhHHhhHHHHHhc
Q psy4163 39 EHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIEDQCEDVRN 82 (85)
Q Consensus 39 e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~e~~~~~~~~~~ 82 (85)
++++..+.+.+ ..||+++-...|+++.++++.-+..+-+
T Consensus 12 ~~~l~~l~~~y-----~~i~~~~i~~~~~l~~~~vE~~i~~~i~ 50 (88)
T smart00753 12 LTNLLQLSEPY-----SSISLSDLAKLLGLSVPEVEKLVSKAIR 50 (88)
T ss_pred HHHHHHHhHHh-----ceeeHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 44555555554 4499999999999999988776665543
No 160
>KOG0489|consensus
Probab=28.87 E-value=57 Score=24.12 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=26.1
Q ss_pred CCCcccHHhhHHHHHhhccchhhHHHHHhh
Q psy4163 19 VGRSVSRHELFPIRANFMALEHCIAPFLNK 48 (85)
Q Consensus 19 ~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~ 48 (85)
.+.+|||.-=.++...+.+.|+.|+-||+.
T Consensus 180 fN~YLtR~RRiEiA~~L~LtErQIKIWFQN 209 (261)
T KOG0489|consen 180 FNKYLTRSRRIEIAHALNLTERQIKIWFQN 209 (261)
T ss_pred cccccchHHHHHHHhhcchhHHHHHHHHHH
Confidence 457899998889999999999999999863
No 161
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=28.53 E-value=78 Score=17.95 Aligned_cols=32 Identities=13% Similarity=0.307 Sum_probs=23.3
Q ss_pred HHHhhhcCCCCCcccHHHHHHhcCCChhHHhh
Q psy4163 44 PFLNKCDADDDHLITLKEWARCLELNEDEIED 75 (85)
Q Consensus 44 ~f~~~cD~n~Dg~ISl~Ew~~clg~~~~e~~~ 75 (85)
+.++.....|--.||-.|-...+|+++..++.
T Consensus 16 r~L~~l~~~G~~~vSS~~La~~~gi~~~qVRK 47 (50)
T PF06971_consen 16 RYLEQLKEEGVERVSSQELAEALGITPAQVRK 47 (50)
T ss_dssp HHHHHHHHTT-SEE-HHHHHHHHTS-HHHHHH
T ss_pred HHHHHHHHcCCeeECHHHHHHHHCCCHHHhcc
Confidence 45666777888899999999999999777653
No 162
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=28.42 E-value=1.5e+02 Score=18.55 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=12.7
Q ss_pred CCCcccHHhhHHHHHhhccc
Q psy4163 19 VGRSVSRHELFPIRANFMAL 38 (85)
Q Consensus 19 ~Dg~L~~~EL~~~~~~~~~~ 38 (85)
.+|.++..+|+.++...+..
T Consensus 61 ~~~~~~~~~i~~~r~~~glt 80 (127)
T TIGR03830 61 VDGLLTPPEIRRIRKKLGLS 80 (127)
T ss_pred ccCCcCHHHHHHHHHHcCCC
Confidence 45677777777776655433
No 163
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=28.30 E-value=87 Score=21.15 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=26.0
Q ss_pred CCCCcccHHHHHHhcCCChhHHhhHHHHHhcc
Q psy4163 52 DDDHLITLKEWARCLELNEDEIEDQCEDVRND 83 (85)
Q Consensus 52 n~Dg~ISl~Ew~~clg~~~~e~~~~~~~~~~~ 83 (85)
-.||++|..|-.+-+|+++.-..+....+.+.
T Consensus 24 q~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~ 55 (164)
T PRK11169 24 QKDGRISNVELSKRVGLSPTPCLERVRRLERQ 55 (164)
T ss_pred ccCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46999999999999999987777776666543
No 164
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=27.49 E-value=75 Score=20.55 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=24.3
Q ss_pred CCCcccHHHHHHhcCCChhHHhhHHHHHhc
Q psy4163 53 DDHLITLKEWARCLELNEDEIEDQCEDVRN 82 (85)
Q Consensus 53 ~Dg~ISl~Ew~~clg~~~~e~~~~~~~~~~ 82 (85)
.|+.+|+.|-.+-+|+++.........+.+
T Consensus 19 ~d~r~~~~eia~~lglS~~~v~~Ri~~L~~ 48 (154)
T COG1522 19 EDARISNAELAERVGLSPSTVLRRIKRLEE 48 (154)
T ss_pred HhCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 478899999999999998877776666544
No 165
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=27.42 E-value=1e+02 Score=16.47 Aligned_cols=27 Identities=11% Similarity=-0.036 Sum_probs=20.2
Q ss_pred CcccHHhhHHHHHhhccchhhHHHHHh
Q psy4163 21 RSVSRHELFPIRANFMALEHCIAPFLN 47 (85)
Q Consensus 21 g~L~~~EL~~~~~~~~~~e~c~~~f~~ 47 (85)
=+-|++|...+.+.-+.....+..||.
T Consensus 9 PYPs~~ek~~L~~~tgls~~Qi~~WF~ 35 (40)
T PF05920_consen 9 PYPSKEEKEELAKQTGLSRKQISNWFI 35 (40)
T ss_dssp GS--HHHHHHHHHHHTS-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567888888888888899999999874
No 166
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=27.33 E-value=71 Score=21.25 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=35.2
Q ss_pred hhchhcCCCCC-CCcccHHhhHHHHHhh-------cc-----c----hh----hHHHHHhhhcCCCCCcccHHHHHHhc
Q psy4163 9 TAFTASPAQHV-GRSVSRHELFPIRANF-------MA-----L----EH----CIAPFLNKCDADDDHLITLKEWARCL 66 (85)
Q Consensus 9 w~F~~LD~n~~-Dg~L~~~EL~~~~~~~-------~~-----~----e~----c~~~f~~~cD~n~Dg~ISl~Ew~~cl 66 (85)
=.|.+.-.+.. |..|+-.|+..+...+ .+ + +. |+.=+++-+|..++|+|+.-++...|
T Consensus 45 ~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL 123 (127)
T PF09068_consen 45 EAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVAL 123 (127)
T ss_dssp HHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHH
T ss_pred HHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHH
Confidence 34666666644 6889999998866432 01 1 23 34447899999999999999887654
No 167
>COG2944 Predicted transcriptional regulator [Transcription]
Probab=27.02 E-value=1.5e+02 Score=19.46 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=19.9
Q ss_pred cccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCCCh
Q psy4163 22 SVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELNE 70 (85)
Q Consensus 22 ~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~ 70 (85)
.++..|++.+++.++ +|..+|.+.||++.
T Consensus 43 ~ls~~eIk~iRe~~~--------------------lSQ~vFA~~L~vs~ 71 (104)
T COG2944 43 TLSPTEIKAIREKLG--------------------LSQPVFARYLGVSV 71 (104)
T ss_pred CCCHHHHHHHHHHhC--------------------CCHHHHHHHHCCCH
Confidence 366666666666543 77888888888873
No 168
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=26.81 E-value=1.1e+02 Score=16.12 Aligned_cols=30 Identities=10% Similarity=0.188 Sum_probs=22.3
Q ss_pred CCCcc-cHHHHHHhcCCChhHHhhHHHHHhc
Q psy4163 53 DDHLI-TLKEWARCLELNEDEIEDQCEDVRN 82 (85)
Q Consensus 53 ~Dg~I-Sl~Ew~~clg~~~~e~~~~~~~~~~ 82 (85)
....+ |..|.+..||++..-+.+-...+.+
T Consensus 16 ~~~~l~s~~~la~~~~vs~~tv~~~l~~L~~ 46 (60)
T smart00345 16 PGDKLPSERELAAQLGVSRTTVREALSRLEA 46 (60)
T ss_pred CCCcCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567 8889999999887777777666654
No 169
>KOG0751|consensus
Probab=26.72 E-value=1.4e+02 Score=25.41 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=14.5
Q ss_pred hhcCCCCCcccHHHHHHh
Q psy4163 48 KCDADDDHLITLKEWARC 65 (85)
Q Consensus 48 ~cD~n~Dg~ISl~Ew~~c 65 (85)
--|..+||.||.+||+.-
T Consensus 82 iaD~tKDglisf~eF~af 99 (694)
T KOG0751|consen 82 IADQTKDGLISFQEFRAF 99 (694)
T ss_pred hhhhcccccccHHHHHHH
Confidence 346789999999999753
No 170
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=26.58 E-value=1e+02 Score=15.76 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=22.1
Q ss_pred CcccHHHHHHhcCCChhHHhhHHHHHhc
Q psy4163 55 HLITLKEWARCLELNEDEIEDQCEDVRN 82 (85)
Q Consensus 55 g~ISl~Ew~~clg~~~~e~~~~~~~~~~ 82 (85)
+.+|..+.+.-|++++.-+.+-...+..
T Consensus 13 ~~~s~~~l~~~l~~s~~tv~~~l~~L~~ 40 (53)
T smart00420 13 GKVSVEELAELLGVSEMTIRRDLNKLEE 40 (53)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5699999999999998777766666654
No 171
>PLN00010 cyclin-dependent kinases regulatory subunit; Provisional
Probab=26.57 E-value=42 Score=21.50 Aligned_cols=17 Identities=24% Similarity=0.761 Sum_probs=14.6
Q ss_pred CCCcccHHHHHHhcCCCh
Q psy4163 53 DDHLITLKEWARCLELNE 70 (85)
Q Consensus 53 ~Dg~ISl~Ew~~clg~~~ 70 (85)
+++.+|-+|| +.||+..
T Consensus 32 k~~LL~E~EW-R~LGIqq 48 (86)
T PLN00010 32 KNRLLSENEW-RAIGVQQ 48 (86)
T ss_pred cCcccCHHHH-HHhcccc
Confidence 5789999999 6999875
No 172
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=25.73 E-value=1e+02 Score=17.80 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=22.2
Q ss_pred CCcccHHHHHHhcCCChhHHhhHHHHHhc
Q psy4163 54 DHLITLKEWARCLELNEDEIEDQCEDVRN 82 (85)
Q Consensus 54 Dg~ISl~Ew~~clg~~~~e~~~~~~~~~~ 82 (85)
.|.+|+.|-..-|+++++.++.-.+-|.+
T Consensus 12 ~~~~S~~eLa~~~~~s~~~ve~mL~~l~~ 40 (69)
T PF09012_consen 12 RGRVSLAELAREFGISPEAVEAMLEQLIR 40 (69)
T ss_dssp S-SEEHHHHHHHTT--HHHHHHHHHHHHC
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 67899999999999999998887777754
No 173
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=25.67 E-value=2.3e+02 Score=19.52 Aligned_cols=53 Identities=21% Similarity=0.235 Sum_probs=35.9
Q ss_pred CCCcccHHhhHHHHHhhccchhhHHHHHhhhcC-CCCCcccHHHHHHhcCCChhHHh
Q psy4163 19 VGRSVSRHELFPIRANFMALEHCIAPFLNKCDA-DDDHLITLKEWARCLELNEDEIE 74 (85)
Q Consensus 19 ~Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~-n~Dg~ISl~Ew~~clg~~~~e~~ 74 (85)
....+++.++..+.+..+.++.-...|=..|.. +-++. .+|..-||+++.|+.
T Consensus 112 ~~~~V~~~~w~~l~~~~g~~~~~m~~wh~~fe~~~p~~h---~~~l~~~g~~~~~~~ 165 (172)
T cd04790 112 EQRLVTKEKWVAILKAAGMDEADMRRWHIEFEKMEPEAH---QEFLQSLGIPEDEIE 165 (172)
T ss_pred ccccCCHHHHHHHHHHcCCChHHHHHHHHHHHHhCcHHH---HHHHHHcCCCHHHHH
Confidence 446677888888777777666666677666664 33433 578888888866653
No 174
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=25.08 E-value=1e+02 Score=18.19 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=25.7
Q ss_pred hhhHHHHHhhhcCCCCCcccHHHHHHhc---CC
Q psy4163 39 EHCIAPFLNKCDADDDHLITLKEWARCL---EL 68 (85)
Q Consensus 39 e~c~~~f~~~cD~n~Dg~ISl~Ew~~cl---g~ 68 (85)
....+.|++.|...+++.|++.+=+..| +.
T Consensus 7 ~~lt~~fi~~~~~~~~~~i~l~~ia~~l~~~~~ 39 (71)
T PF02319_consen 7 KLLTQRFIQLFESSPDKSISLNEIADKLISENV 39 (71)
T ss_dssp HHHHHHHHHHHHHCCCTEEEHHHHHHHCHHHCC
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHccccc
Confidence 3457789999998888999999999998 66
No 175
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=25.06 E-value=87 Score=20.51 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=19.2
Q ss_pred CcccHHHHHHhcCCChhHHhhHHHH
Q psy4163 55 HLITLKEWARCLELNEDEIEDQCED 79 (85)
Q Consensus 55 g~ISl~Ew~~clg~~~~e~~~~~~~ 79 (85)
..||+...+.+||++.+|+..-|.+
T Consensus 96 ~sIs~~~la~~Lg~~~~el~~~~~~ 120 (143)
T PF10075_consen 96 SSISLSDLAEMLGLSEEELEKFIKS 120 (143)
T ss_dssp SEE-HHHHHHHTTS-HHHHHHHHHH
T ss_pred hHcCHHHHHHHhCCCHHHHHHHHHH
Confidence 4599999999999998888777664
No 176
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=25.04 E-value=1.6e+02 Score=17.35 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=29.9
Q ss_pred chhhHHHHHhhhcCCCCCcccHHHHHHhcCCChhHHhhHHHHHhcc
Q psy4163 38 LEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIEDQCEDVRND 83 (85)
Q Consensus 38 ~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~~~~e~~~~~~~~~~~ 83 (85)
.++.+..+... -..||+++....|+++.++++.-+..+-..
T Consensus 47 ~~~~l~~l~~~-----y~~i~~~~ia~~l~~~~~~vE~~l~~~I~~ 87 (105)
T PF01399_consen 47 RRRNLRQLSKP-----YSSISISEIAKALQLSEEEVESILIDLISN 87 (105)
T ss_dssp HHHHHHHHHHC------SEEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-----hcccchHHHHHHhccchHHHHHHHHHHHHC
Confidence 34455566664 455999999999999999988877765443
No 177
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=24.34 E-value=72 Score=24.87 Aligned_cols=36 Identities=31% Similarity=0.685 Sum_probs=24.3
Q ss_pred HhhhcCCC----CCcccHHHHHHhcCCChhHHhhHHHHHhc
Q psy4163 46 LNKCDADD----DHLITLKEWARCLELNEDEIEDQCEDVRN 82 (85)
Q Consensus 46 ~~~cD~n~----Dg~ISl~Ew~~clg~~~~e~~~~~~~~~~ 82 (85)
.+..|.|- -|.=-++|||+ ||++..++-..|..||-
T Consensus 10 ~r~~danl~r~reglrv~e~~~r-~~~~~~~~~~~~k~~r~ 49 (347)
T PRK02615 10 ARILDANLDRAREGLRVLEEWCR-FGLENEDLVERCKDLRQ 49 (347)
T ss_pred HHHHhccchhhhcccHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 34445543 35556788887 68888888888888774
No 178
>PHA03256 BDLF3; Provisional
Probab=24.33 E-value=73 Score=19.94 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=18.0
Q ss_pred CcccHHHHHHhcCCChhHHhhHHHHHh
Q psy4163 55 HLITLKEWARCLELNEDEIEDQCEDVR 81 (85)
Q Consensus 55 g~ISl~Ew~~clg~~~~e~~~~~~~~~ 81 (85)
+.||-++|..|....+..+....+.+.
T Consensus 15 ~~IsE~df~~~~~ff~rpLp~lVaevs 41 (77)
T PHA03256 15 GTIGEREFGELLSWDPTDLPRTVARVY 41 (77)
T ss_pred CccCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 467888888877777666655555543
No 179
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=24.29 E-value=1.9e+02 Score=21.47 Aligned_cols=50 Identities=8% Similarity=-0.013 Sum_probs=31.4
Q ss_pred CCCcccHHhhHHHHH---hhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCC
Q psy4163 19 VGRSVSRHELFPIRA---NFMALEHCIAPFLNKCDADDDHLITLKEWARCLEL 68 (85)
Q Consensus 19 ~Dg~L~~~EL~~~~~---~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~ 68 (85)
.||.+|..|+.-... .+.+++.--+.-...+..-+....++.+++.-|..
T Consensus 68 ADG~Vse~Ei~~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 68 AKGRVTEADIRIASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRS 120 (267)
T ss_pred cCCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 589999999983332 34455554333455555555566778888776643
No 180
>PRK08181 transposase; Validated
Probab=23.80 E-value=1.3e+02 Score=22.38 Aligned_cols=47 Identities=4% Similarity=-0.026 Sum_probs=35.7
Q ss_pred CCcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcC
Q psy4163 20 GRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLE 67 (85)
Q Consensus 20 Dg~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg 67 (85)
-++++..+|...++.++++ .+++.|-...+.-..+.+|..||..-|-
T Consensus 4 ~~~~~~~~l~~~l~~LkL~-~~~~~~~~~~~~a~~~~~~~~e~L~~ll 50 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLP-TIKTLWPQFAEQADKEGWPAARFLAAIA 50 (269)
T ss_pred CCcccHHHHHHHHHHcCch-HHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 3688889999888877654 6677777776666677899999987663
No 181
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=23.70 E-value=1.1e+02 Score=18.61 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=23.8
Q ss_pred CCcccHHHHHHhcCCChhHHhhHHHHHhc
Q psy4163 54 DHLITLKEWARCLELNEDEIEDQCEDVRN 82 (85)
Q Consensus 54 Dg~ISl~Ew~~clg~~~~e~~~~~~~~~~ 82 (85)
++.+|..|-.+-+|+++..+.+....+..
T Consensus 15 ~~~~~~~~la~~l~~s~~tv~~~l~~L~~ 43 (108)
T smart00344 15 DARISLAELAKKVGLSPSTVHNRVKRLEE 43 (108)
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46899999999999998888777777654
No 182
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=23.48 E-value=46 Score=19.50 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=13.6
Q ss_pred ccHHhhHHHHHhhccchhhHHHHH
Q psy4163 23 VSRHELFPIRANFMALEHCIAPFL 46 (85)
Q Consensus 23 L~~~EL~~~~~~~~~~e~c~~~f~ 46 (85)
++..+...++..+++++.-++-||
T Consensus 30 ~~~~~r~~la~~lgl~~~vvKVWf 53 (58)
T TIGR01565 30 KRREEVREFCEEIGVTRKVFKVWM 53 (58)
T ss_pred CCHHHHHHHHHHhCCCHHHeeeec
Confidence 555555556655555555555544
No 183
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=22.99 E-value=1.5e+02 Score=16.60 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=24.6
Q ss_pred CCcccHHHHHHhcCCChhHHhhHHHHHhc
Q psy4163 54 DHLITLKEWARCLELNEDEIEDQCEDVRN 82 (85)
Q Consensus 54 Dg~ISl~Ew~~clg~~~~e~~~~~~~~~~ 82 (85)
.+.+|+.|-+.-||++..-+...+..++.
T Consensus 17 ~~~~~~~ela~~l~~S~rti~~~i~~L~~ 45 (59)
T PF08280_consen 17 NKWITLKELAKKLNISERTIKNDINELNE 45 (59)
T ss_dssp HTSBBHHHHHHHCTS-HHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67799999999999999888888888763
No 184
>COG1274 PckA Phosphoenolpyruvate carboxykinase (GTP) [Energy production and conversion]
Probab=22.79 E-value=1.1e+02 Score=25.83 Aligned_cols=21 Identities=10% Similarity=-0.127 Sum_probs=16.4
Q ss_pred hchHhhhchhcCCCCCCCcccH
Q psy4163 4 SMVKGTAFTASPAQHVGRSVSR 25 (85)
Q Consensus 4 ~~v~~w~F~~LD~n~~Dg~L~~ 25 (85)
+||+.|+|.++|-+ .++.=|.
T Consensus 520 ~rvL~Wi~~R~e~~-~~a~eTp 540 (608)
T COG1274 520 SRVLKWIVDRIEGD-ANAIETP 540 (608)
T ss_pred hhhhhhHHHHhccc-cCccccc
Confidence 78999999999987 6654443
No 185
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=22.79 E-value=52 Score=16.62 Aligned_cols=11 Identities=18% Similarity=0.286 Sum_probs=9.1
Q ss_pred CCcccHHHHHH
Q psy4163 54 DHLITLKEWAR 64 (85)
Q Consensus 54 Dg~ISl~Ew~~ 64 (85)
.|.||-+||-.
T Consensus 14 ~G~IseeEy~~ 24 (31)
T PF09851_consen 14 KGEISEEEYEQ 24 (31)
T ss_pred cCCCCHHHHHH
Confidence 68999999964
No 186
>KOG4233|consensus
Probab=21.96 E-value=52 Score=21.09 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=20.1
Q ss_pred hccchhhHHHHHhhhcC-C----CCCcccHHHHHHhc
Q psy4163 35 FMALEHCIAPFLNKCDA-D----DDHLITLKEWARCL 66 (85)
Q Consensus 35 ~~~~e~c~~~f~~~cD~-n----~Dg~ISl~Ew~~cl 66 (85)
++++|.-.++|++.+=. + +|-.=-+.|||.||
T Consensus 53 lkKdE~lF~~Wlk~~~gat~~~a~~~~~CL~eWc~~F 89 (90)
T KOG4233|consen 53 LKKDEDLFQEWLKETCGATAKQAQDCFNCLNEWCDCF 89 (90)
T ss_pred hcccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh
Confidence 35677777888776532 1 22233578999887
No 187
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=21.65 E-value=1.3e+02 Score=24.45 Aligned_cols=55 Identities=7% Similarity=0.009 Sum_probs=43.5
Q ss_pred chhcCCCCCCCcccHHhhHHHHHhhccchhhHHH--HHhhhcCCCCCcccHHHHHHhc
Q psy4163 11 FTASPAQHVGRSVSRHELFPIRANFMALEHCIAP--FLNKCDADDDHLITLKEWARCL 66 (85)
Q Consensus 11 F~~LD~n~~Dg~L~~~EL~~~~~~~~~~e~c~~~--f~~~cD~n~Dg~ISl~Ew~~cl 66 (85)
..+...+ .+|-.+..||..++..-...+.-+++ +....+.+..|.+|..|...-+
T Consensus 490 ~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (566)
T PLN03225 490 MAKSGTE-KEGGFTEAQLQELREKEPKKKGSAQRNALASALRLQRKGVKTVARTVDEI 546 (566)
T ss_pred HHhcCCC-CCCCccHHHHHHhhhhcCcchhhhhhhhHHHHHhhhhhhhhhhhhhhhcc
Confidence 3455667 88999999999999765555555555 8899999999999999987743
No 188
>KOG4578|consensus
Probab=21.60 E-value=66 Score=25.80 Aligned_cols=28 Identities=11% Similarity=-0.015 Sum_probs=23.1
Q ss_pred hHhhhchhcCCCCCCCcccHHhhHHHHHh
Q psy4163 6 VKGTAFTASPAQHVGRSVSRHELFPIRAN 34 (85)
Q Consensus 6 v~~w~F~~LD~n~~Dg~L~~~EL~~~~~~ 34 (85)
..+-.|..-|.| +|..||-.||+..+..
T Consensus 371 C~rk~~~yCDlN-kDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 371 CSRKFFKYCDLN-KDKKISLDEWRGCLGV 398 (421)
T ss_pred HhhhcchhcccC-CCceecHHHHhhhhcc
Confidence 344468888999 9999999999998753
No 189
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=21.47 E-value=63 Score=20.98 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=11.1
Q ss_pred CCcccHHHHHHhcC
Q psy4163 54 DHLITLKEWARCLE 67 (85)
Q Consensus 54 Dg~ISl~Ew~~clg 67 (85)
+|+|+.+||+.-|.
T Consensus 38 ~~~i~~EeF~~~Lq 51 (96)
T PF07531_consen 38 DGKIEAEEFTSKLQ 51 (96)
T ss_dssp TTSS-HHHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 78999999998774
No 190
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=21.23 E-value=54 Score=22.71 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=18.5
Q ss_pred chhcCCCCCCCcccHHhhHHHHH
Q psy4163 11 FTASPAQHVGRSVSRHELFPIRA 33 (85)
Q Consensus 11 F~~LD~n~~Dg~L~~~EL~~~~~ 33 (85)
-..+|.+ +.+++|-+||+....
T Consensus 75 L~~le~~-rg~Y~TiSeLKT~vy 96 (148)
T PF12486_consen 75 LNQLEEQ-RGKYMTISELKTAVY 96 (148)
T ss_pred HHHHHHh-cCCceeHHHHHHHHH
Confidence 4578999 889999999998764
No 191
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=20.87 E-value=1.1e+02 Score=18.88 Aligned_cols=66 Identities=12% Similarity=0.042 Sum_probs=41.6
Q ss_pred chhcCCCCCCCcccHHhhHHHHHhhcc-chhhHHH---HHhhhcCCCCCcccHHHHHHhcCCChhHHhhHHH
Q psy4163 11 FTASPAQHVGRSVSRHELFPIRANFMA-LEHCIAP---FLNKCDADDDHLITLKEWARCLELNEDEIEDQCE 78 (85)
Q Consensus 11 F~~LD~n~~Dg~L~~~EL~~~~~~~~~-~e~c~~~---f~~~cD~n~Dg~ISl~Ew~~clg~~~~e~~~~~~ 78 (85)
|...|.. ...++..||..+...... .+.-+.+ -.+.-+......+|.+||...+.-.|.-+.+|..
T Consensus 26 ~~~idi~--~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~LikRPii 95 (105)
T cd02977 26 YEFIDYL--KEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLIKRPIV 95 (105)
T ss_pred cEEEeec--cCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCeeeCCEE
Confidence 5556654 367889999999876542 1211211 1122222223578999999999988888888764
No 192
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=20.80 E-value=60 Score=21.04 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=11.9
Q ss_pred CCcccHHHHHHhcC
Q psy4163 54 DHLITLKEWARCLE 67 (85)
Q Consensus 54 Dg~ISl~Ew~~clg 67 (85)
+|.||.+||+.-|.
T Consensus 37 ~~~i~~EeF~~~Lq 50 (92)
T smart00549 37 NGTITAEEFTSRLQ 50 (92)
T ss_pred hCCCCHHHHHHHHH
Confidence 67899999998774
No 193
>KOG0491|consensus
Probab=20.74 E-value=1e+02 Score=22.39 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=23.6
Q ss_pred CcccHHhhHHHHHhhccchhhHHHHHhh
Q psy4163 21 RSVSRHELFPIRANFMALEHCIAPFLNK 48 (85)
Q Consensus 21 g~L~~~EL~~~~~~~~~~e~c~~~f~~~ 48 (85)
.+|+-.|..++...+.+.+..++.||+.
T Consensus 123 rYLS~~e~~ELan~L~LS~~QVKTWFQN 150 (194)
T KOG0491|consen 123 RYLSTPERQELANALSLSETQVKTWFQN 150 (194)
T ss_pred hhcccHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5788888888888888999999999863
No 194
>PF05810 NinF: NinF protein; InterPro: IPR008712 This family consists of several bacteriophage NinF proteins as well as related sequences from Escherichia coli.
Probab=20.60 E-value=79 Score=18.81 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=14.3
Q ss_pred chhhHHHHHhhhcCCCC
Q psy4163 38 LEHCIAPFLNKCDADDD 54 (85)
Q Consensus 38 ~e~c~~~f~~~cD~n~D 54 (85)
=++|+..|+.+=|.|++
T Consensus 35 Ce~C~~E~l~y~DpN~~ 51 (58)
T PF05810_consen 35 CEECCAEWLVYRDPNSS 51 (58)
T ss_pred HHHHHHHHHhhcCCccc
Confidence 37899999999999764
No 195
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=20.44 E-value=1.7e+02 Score=16.02 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=21.0
Q ss_pred cHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHH---HHhcCCChhHHh
Q psy4163 24 SRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEW---ARCLELNEDEIE 74 (85)
Q Consensus 24 ~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew---~~clg~~~~e~~ 74 (85)
+..+|.. ..+.++.-+.++++ ++-..+|++.. |.+||++++|+-
T Consensus 12 t~~~La~---~~gis~~tl~~~~~----~~~~~~~~~~l~~ia~~l~~~~~el~ 58 (63)
T PF13443_consen 12 TQKDLAR---KTGISRSTLSRILN----GKPSNPSLDTLEKIAKALNCSPEELF 58 (63)
T ss_dssp -HHHHHH---HHT--HHHHHHHHT----TT-----HHHHHHHHHHHT--HHHCT
T ss_pred CHHHHHH---HHCcCHHHHHHHHh----cccccccHHHHHHHHHHcCCCHHHHh
Confidence 5555543 34456666666665 21245666655 889999988864
No 196
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=20.13 E-value=2.2e+02 Score=17.31 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=19.4
Q ss_pred CcccHHhhHHHHHhhccchhhHHHHHhhhcCCCCCcccHHHHHHhcCC
Q psy4163 21 RSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLEL 68 (85)
Q Consensus 21 g~L~~~EL~~~~~~~~~~e~c~~~f~~~cD~n~Dg~ISl~Ew~~clg~ 68 (85)
..++-+||.... +.++.-+.+.++..= .+|..+|...+.+
T Consensus 20 ~~~~~~~lA~~~---~~S~~~l~r~f~~~~-----g~s~~~~i~~~Rl 59 (107)
T PRK10219 20 QPLNIDVVAKKS---GYSKWYLQRMFRTVT-----HQTLGDYIRQRRL 59 (107)
T ss_pred CCCCHHHHHHHH---CCCHHHHHHHHHHHH-----CcCHHHHHHHHHH
Confidence 335555554333 344444444444431 2566777665554
No 197
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=20.11 E-value=1.4e+02 Score=15.01 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=10.0
Q ss_pred ccHHHHHHhcCCChhH
Q psy4163 57 ITLKEWARCLELNEDE 72 (85)
Q Consensus 57 ISl~Ew~~clg~~~~e 72 (85)
+|..|-+.-||++..-
T Consensus 2 lt~~e~a~~lgis~~t 17 (49)
T TIGR01764 2 LTVEEAAEYLGVSKDT 17 (49)
T ss_pred CCHHHHHHHHCCCHHH
Confidence 4666777777776443
Done!