RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4163
(85 letters)
>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A
{Homo sapiens} SCOP: a.39.1.3
Length = 151
Score = 72.6 bits (177), Expect = 3e-18
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 21 RSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIEDQC 77
+S EL P+RA + +EHC F CD D+D I L EWA C + + +I+
Sbjct: 93 GYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKDL 149
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 66.5 bits (161), Expect = 3e-15
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 21 RSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIEDQC 77
+S EL P+RA + +EHC F CD D+D I L EWA C + + +I+
Sbjct: 171 GYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKDL 227
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 30.2 bits (69), Expect = 0.043
Identities = 2/31 (6%), Positives = 10/31 (32%), Gaps = 9/31 (29%)
Query: 45 FLNKCDADDDHLITLKEWARCLELNEDEIED 75
L + D+ ++ + +++
Sbjct: 118 ALTRSDSTHM------HA---IDELKAKLKV 139
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 26.8 bits (59), Expect = 0.81
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 10/32 (31%)
Query: 45 FLNKCD-ADDDHLITLKEWARCLELNEDEIED 75
FLNKCD DD+ L LEL E E+ +
Sbjct: 418 FLNKCDMVDDEEL---------LELVEMEVRE 440
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 26.8 bits (60), Expect = 0.89
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 8/31 (25%)
Query: 45 FLNKCDADDDHLITLKEWARCLELNEDEIED 75
F+NK D DD E L+L E E+ D
Sbjct: 134 FMNKVDMVDD-----PEL---LDLVEMEVRD 156
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 26.4 bits (59), Expect = 0.98
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 45 FLNKCDA-DDDHLITLKEWARCLELNE 70
++NK DA D ++ L E LE+ E
Sbjct: 125 YVNKADAVQDSEMVELVE----LEIRE 147
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 26.6 bits (59), Expect = 1.1
Identities = 4/31 (12%), Positives = 9/31 (29%), Gaps = 9/31 (29%)
Query: 45 FLNKCDADDDHLITLKEWARCLELNEDEIED 75
+ K D E ++ E ++
Sbjct: 131 VITKSDNAGT------EE---IKRTEMIMKS 152
>2otn_A Diaminopimelate epimerase; DAP, lysine ME lanthionine, isomerase;
2.40A {Bacillus anthracis str}
Length = 308
Score = 25.3 bits (56), Expect = 2.4
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 15 PAQHVGRSVSRHELFPIRAN--FM 36
P +G + HE+FP R N F+
Sbjct: 200 PLTTLGPVLETHEMFPERVNVEFI 223
>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex,
covalently bound inhibitor, isomer; HET: ZDP; 1.35A
{Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB:
1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A
Length = 274
Score = 25.2 bits (56), Expect = 2.9
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 15 PAQHVGRSVSRHELFPIRAN--FM 36
+ +G + HE FP R N FM
Sbjct: 171 NVEQLGPLLESHERFPERVNAGFM 194
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 24.5 bits (53), Expect = 3.2
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 45 FLNKCDADDDHLITLKEWARCLELNE 70
+ D + D L+TL+E+ + E
Sbjct: 77 VMKNVDTNQDRLVTLEEFLASTQRKE 102
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic;
PLP-independenet amino acid racemase,
aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A
{Arabidopsis thaliana} PDB: 3ekm_A*
Length = 317
Score = 24.9 bits (55), Expect = 3.7
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 15 PAQHVGRSVSRHELFPIRAN--FM 36
+G HE+FP R N F+
Sbjct: 208 NLPEIGPKFEHHEMFPARTNTEFV 231
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis;
NMR {Homo sapiens} SCOP: a.77.1.2
Length = 112
Score = 24.2 bits (52), Expect = 5.2
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 60 KEWARCLELNEDEIEDQCEDVRNDDE 85
KE+ + L L++ EI+
Sbjct: 29 KEFVKRLGLSDHEIDRLELQNGRCLR 54
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
transferase; 2.00A {Oryza sativa japonica group}
Length = 483
Score = 24.6 bits (53), Expect = 5.3
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 8 GTAFTASPAQHVGRSVSRH 26
GTA AS H+G SR
Sbjct: 175 GTARYASVNTHLGIEQSRR 193
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 24.2 bits (52), Expect = 6.0
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 38 LEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIE 74
+ F K D + D ++TL E+ + +++ +
Sbjct: 171 PRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMR 207
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A
{Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A*
2csn_A*
Length = 298
Score = 24.2 bits (53), Expect = 6.2
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 8 GTAFTASPAQHVGRSVSRH 26
GTA S H+GR SR
Sbjct: 180 GTARYMSINTHLGREQSRR 198
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase,
transferase, ATP- binding, phosphorylation,
nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB:
2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Length = 330
Score = 24.3 bits (53), Expect = 6.4
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 8 GTAFTASPAQHVGRSVSRH 26
GTA S H+G+ SR
Sbjct: 179 GTARYMSINTHLGKEQSRR 197
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor,
PF670462, transferase-transferase I complex; HET: 0CK;
1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Length = 296
Score = 23.9 bits (52), Expect = 7.3
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 8 GTAFTASPAQHVGRSVSRH 26
GTA AS H+G SR
Sbjct: 177 GTARYASINTHLGIEQSRR 195
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus
musculus} SCOP: a.77.1.2
Length = 99
Score = 23.6 bits (51), Expect = 7.9
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 60 KEWARCLELNEDEIEDQCEDVRND 83
K AR L+++E +++ E
Sbjct: 29 KRLARELKVSEAKMDGIEEKYPRS 52
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 24.0 bits (53), Expect = 8.4
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 54 DHLITLKEWARCLELNEDEIE 74
+L K+ R + + E+E
Sbjct: 194 QYLTETKQPIRKGDWSNREVE 214
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor,
transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A
3oq9_H
Length = 122
Score = 23.8 bits (51), Expect = 8.8
Identities = 4/24 (16%), Positives = 13/24 (54%)
Query: 60 KEWARCLELNEDEIEDQCEDVRND 83
+ AR L++++ +I+ + +
Sbjct: 21 RRLARQLKVSDTKIDSIEDRYPRN 44
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 23.7 bits (51), Expect = 9.0
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 45 FLNKCDADDDHLITLKEWARCLELNEDEIE 74
F K D + D ++T+ E+ + +E+ +
Sbjct: 191 FFQKMDKNKDGVVTIDEFIESCQKDENIMR 220
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear
matrix, riken structural genomics/proteomics
initiative, RSGI, transport protein; NMR {Homo sapiens}
Length = 110
Score = 23.3 bits (50), Expect = 9.2
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 60 KEWARCLELNEDEIEDQCEDVRNDDE 85
K A LE+ + EI D +
Sbjct: 33 KILAPYLEMKDSEIRQIECDSEDMKM 58
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 23.8 bits (51), Expect = 9.6
Identities = 7/55 (12%), Positives = 20/55 (36%)
Query: 17 QHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELNED 71
+ + ++ ++ + + E +DD +T KE+ N++
Sbjct: 134 MAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLANKE 188
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.416
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,277,494
Number of extensions: 61732
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 48
Length of query: 85
Length of database: 6,701,793
Length adjustment: 53
Effective length of query: 32
Effective length of database: 5,221,980
Effective search space: 167103360
Effective search space used: 167103360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)