RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4163
(85 letters)
>d1sraa_ a.39.1.3 (A:) C-terminal (EC) domain of
BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId:
9606]}
Length = 151
Score = 73.1 bits (179), Expect = 8e-19
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 21 RSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIED 75
+S EL P+RA + +EHC F CD D+D I L EWA C + + +I+
Sbjct: 93 GYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDK 147
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}
Length = 201
Score = 27.1 bits (59), Expect = 0.21
Identities = 8/58 (13%), Positives = 19/58 (32%)
Query: 17 QHVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIE 74
+ + +S + + + E DD +T KE+ N++ +
Sbjct: 126 TAIFKMISPEDTKHLPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILR 183
>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed
(Chenopodium album) [TaxId: 3559]}
Length = 81
Score = 24.1 bits (52), Expect = 1.7
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 45 FLNKCDADDDHLITLKEWARCLELNEDEIED 75
+ + D D D I+ E+ N ++D
Sbjct: 46 MMAEIDTDGDGFISFDEFTDFARANRGLVKD 76
>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB
{Human (Homo sapiens) [TaxId: 9606]}
Length = 180
Score = 24.3 bits (52), Expect = 1.9
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 38 LEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIE 74
++ I L + D D D I L E+ + + D
Sbjct: 138 MKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFAS 174
>d1icha_ a.77.1.2 (A:) Tumor necrosis factor receptor-1 death
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 23.7 bits (51), Expect = 2.4
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 60 KEWARCLELNEDEIEDQCEDVRNDDE 85
KE+ + L L++ EI+
Sbjct: 17 KEFVKRLGLSDHEIDRLELQNGRCLR 42
>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting
protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 178
Score = 24.0 bits (51), Expect = 2.6
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 38 LEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIE 74
+ F K D + D ++TL E+ + +++ +
Sbjct: 133 PRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMR 169
>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein
{Sandworm (Nereis diversicolor) [TaxId: 126592]}
Length = 174
Score = 23.9 bits (50), Expect = 2.8
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 23 VSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCL 66
+SR E + + D ++D L++L+E+
Sbjct: 111 ISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAG 154
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 23.8 bits (51), Expect = 3.4
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 31 IRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIEDQCEDVRNDDE 85
+ + ++NK DA D + +EL E EI + + E
Sbjct: 111 LLLARQIGVEHVVVYVNKADAVQD--------SEMVELVELEIRELLTEFGYKGE 157
>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2,
GCAP-2 {Cow (Bos taurus) [TaxId: 9913]}
Length = 189
Score = 23.7 bits (50), Expect = 3.4
Identities = 6/57 (10%), Positives = 20/57 (35%)
Query: 18 HVGRSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIE 74
+ ++ S + + E + D + D ++L E+ ++ ++
Sbjct: 125 KLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARRDKWVMK 181
>d1fada_ a.77.1.2 (A:) FADD (Mort1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 95
Score = 23.0 bits (49), Expect = 4.1
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 60 KEWARCLELNEDEIEDQCEDVRND 83
K AR L+++E +++ E
Sbjct: 25 KRLARELKVSEAKMDGIEEKYPRS 48
>d2gf5a1 a.77.1.2 (A:89-191) FADD (Mort1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 23.0 bits (49), Expect = 4.3
Identities = 4/24 (16%), Positives = 13/24 (54%)
Query: 60 KEWARCLELNEDEIEDQCEDVRND 83
+ AR L++++ +I+ + +
Sbjct: 25 RRLARQLKVSDTKIDSIEDRYPRN 48
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 190
Score = 23.2 bits (49), Expect = 5.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 36 MALEHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIE 74
E + D ++D ITL E+ +++ I
Sbjct: 143 ATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVDPSIIG 181
>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}
Length = 181
Score = 22.9 bits (48), Expect = 6.9
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 39 EHCIAPFLNKCDADDDHLITLKEWARCLELNEDEIE 74
E + D + D ++L+E+ R + + +
Sbjct: 142 EKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVR 177
>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 22.3 bits (47), Expect = 7.2
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 34 NFMALEHCIAPFLNKCDADDDHLITLKEWARCLELNE 70
+ D + D L+TL+E+ + E
Sbjct: 62 MEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQRKE 98
>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein
{Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}
Length = 185
Score = 22.7 bits (47), Expect = 8.6
Identities = 6/46 (13%), Positives = 8/46 (17%)
Query: 21 RSVSRHELFPIRANFMALEHCIAPFLNKCDADDDHLITLKEWARCL 66
V E NF + N L +
Sbjct: 120 GIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELY 165
>d1ddfa_ a.77.1.2 (A:) Fas {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 22.2 bits (47), Expect = 10.0
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 60 KEWARCLELNEDEIEDQCEDVRND 83
K + R +NE +I++ D D
Sbjct: 30 KGFVRKNGVNEAKIDEIKNDNVQD 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.416
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 315,158
Number of extensions: 12191
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 33
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)