Query psy4164
Match_columns 147
No_of_seqs 150 out of 1089
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 18:32:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14580 LRR_9: Leucine-rich r 99.8 9E-21 2E-25 145.7 4.0 83 37-123 85-167 (175)
2 KOG1644|consensus 99.7 2.4E-17 5.1E-22 129.4 2.1 78 37-118 85-162 (233)
3 KOG2123|consensus 99.5 1.3E-14 2.9E-19 119.1 1.9 86 28-117 51-138 (388)
4 KOG2982|consensus 99.0 1.5E-10 3.4E-15 96.1 1.6 94 34-133 218-319 (418)
5 KOG2739|consensus 99.0 2.9E-10 6.3E-15 91.9 2.4 77 36-116 87-163 (260)
6 KOG3207|consensus 98.8 1.7E-09 3.8E-14 93.0 0.8 101 13-118 272-376 (505)
7 KOG3414|consensus 98.8 2.9E-09 6.3E-14 77.9 1.5 36 1-36 1-36 (142)
8 KOG3763|consensus 98.6 1.4E-08 3E-13 89.4 1.8 69 37-110 241-315 (585)
9 KOG1259|consensus 98.5 3.6E-08 7.8E-13 82.5 2.1 82 31-116 365-449 (490)
10 PF02966 DIM1: Mitosis protein 98.2 3.9E-07 8.5E-12 67.1 0.5 36 4-39 1-36 (133)
11 PF12799 LRR_4: Leucine Rich r 98.0 8.4E-06 1.8E-10 49.0 3.3 40 40-85 1-40 (44)
12 PF14580 LRR_9: Leucine-rich r 97.7 2.6E-05 5.7E-10 60.0 2.7 51 31-85 104-154 (175)
13 PF12799 LRR_4: Leucine Rich r 97.5 0.0001 2.3E-09 44.2 2.6 29 31-59 14-43 (44)
14 PF13855 LRR_8: Leucine rich r 97.4 3.2E-05 6.9E-10 48.7 -0.0 42 35-81 20-61 (61)
15 PF13855 LRR_8: Leucine rich r 97.4 0.00014 3E-09 45.7 2.7 56 40-103 1-56 (61)
16 smart00446 LRRcap occurring C- 97.3 0.00015 3.2E-09 39.1 2.0 22 85-106 2-23 (26)
17 KOG1644|consensus 97.0 0.00028 6.1E-09 56.1 1.5 64 32-102 56-119 (233)
18 KOG1859|consensus 97.0 0.00025 5.4E-09 65.3 1.0 74 35-112 249-327 (1096)
19 KOG0531|consensus 96.9 0.00042 9.1E-09 59.1 1.4 63 31-100 108-171 (414)
20 smart00365 LRR_SD22 Leucine-ri 96.3 0.0019 4.2E-08 34.7 1.2 21 39-59 1-21 (26)
21 KOG0617|consensus 96.3 0.00082 1.8E-08 52.9 -0.4 59 5-72 26-84 (264)
22 KOG0618|consensus 96.0 0.002 4.4E-08 60.4 0.3 21 36-56 403-423 (1081)
23 KOG4579|consensus 95.4 0.0032 6.9E-08 47.8 -0.6 59 36-104 73-131 (177)
24 KOG3665|consensus 95.4 0.012 2.6E-07 54.1 3.0 77 37-116 170-269 (699)
25 PF13504 LRR_7: Leucine rich r 95.2 0.013 2.9E-07 28.2 1.4 16 40-55 1-16 (17)
26 KOG0531|consensus 95.1 0.0077 1.7E-07 51.4 0.8 46 32-84 132-177 (414)
27 KOG2123|consensus 95.1 0.0075 1.6E-07 50.5 0.5 67 32-107 33-101 (388)
28 PLN00410 U5 snRNP protein, DIM 95.0 0.01 2.2E-07 44.3 1.1 34 1-34 1-34 (142)
29 KOG4194|consensus 94.9 0.012 2.6E-07 53.5 1.4 57 40-104 173-229 (873)
30 KOG2982|consensus 94.9 0.011 2.4E-07 49.9 0.9 44 37-83 68-111 (418)
31 KOG2739|consensus 94.8 0.014 3E-07 47.7 1.4 79 25-108 50-130 (260)
32 KOG0618|consensus 94.7 0.01 2.2E-07 56.0 0.6 47 33-84 376-422 (1081)
33 KOG3207|consensus 94.4 0.02 4.3E-07 50.2 1.5 67 34-103 140-229 (505)
34 smart00370 LRR Leucine-rich re 94.4 0.028 6E-07 29.4 1.5 19 39-57 1-19 (26)
35 smart00369 LRR_TYP Leucine-ric 94.4 0.028 6E-07 29.4 1.5 19 39-57 1-19 (26)
36 cd00116 LRR_RI Leucine-rich re 94.2 0.044 9.5E-07 43.8 3.0 12 92-103 217-228 (319)
37 PF00560 LRR_1: Leucine Rich R 94.1 0.025 5.3E-07 28.8 0.9 17 41-57 1-17 (22)
38 KOG1259|consensus 94.0 0.019 4.1E-07 48.7 0.6 26 33-58 322-347 (490)
39 KOG0617|consensus 93.6 0.016 3.4E-07 45.7 -0.5 63 30-102 23-85 (264)
40 cd00116 LRR_RI Leucine-rich re 93.5 0.089 1.9E-06 42.0 3.7 44 37-83 190-235 (319)
41 KOG4237|consensus 93.5 0.019 4E-07 50.0 -0.3 44 35-83 86-130 (498)
42 KOG4194|consensus 93.3 0.036 7.8E-07 50.5 1.2 22 36-57 313-334 (873)
43 KOG0472|consensus 93.3 0.037 8.1E-07 48.4 1.3 44 34-83 499-542 (565)
44 KOG3665|consensus 92.9 0.071 1.5E-06 49.1 2.4 67 32-103 212-282 (699)
45 PF13516 LRR_6: Leucine Rich r 92.8 0.041 8.9E-07 28.2 0.5 17 39-55 1-17 (24)
46 KOG4237|consensus 92.4 0.052 1.1E-06 47.3 0.9 22 36-57 270-291 (498)
47 PLN03150 hypothetical protein; 92.3 0.16 3.4E-06 46.0 3.9 59 36-103 438-497 (623)
48 KOG1859|consensus 91.0 0.058 1.2E-06 50.3 -0.4 35 34-73 181-215 (1096)
49 PLN00113 leucine-rich repeat r 90.4 0.24 5.2E-06 46.2 3.1 19 35-53 88-106 (968)
50 COG4886 Leucine-rich repeat (L 90.4 0.13 2.8E-06 43.0 1.2 61 32-102 130-192 (394)
51 KOG1909|consensus 90.3 0.51 1.1E-05 40.4 4.7 64 35-102 208-276 (382)
52 KOG3864|consensus 89.7 0.19 4E-06 40.1 1.5 70 32-106 117-186 (221)
53 smart00368 LRR_RI Leucine rich 88.5 0.28 6E-06 26.3 1.2 15 40-54 2-16 (28)
54 PLN00113 leucine-rich repeat r 88.1 0.5 1.1E-05 44.1 3.5 15 66-82 546-560 (968)
55 smart00364 LRR_BAC Leucine-ric 87.2 0.32 6.9E-06 26.1 0.9 20 40-59 2-21 (26)
56 KOG0444|consensus 86.0 0.33 7E-06 45.1 0.9 46 35-82 121-186 (1255)
57 PRK15387 E3 ubiquitin-protein 83.9 0.59 1.3E-05 43.8 1.7 41 40-84 402-460 (788)
58 PRK15387 E3 ubiquitin-protein 83.6 1.1 2.3E-05 42.1 3.2 18 40-57 382-399 (788)
59 PLN03150 hypothetical protein; 82.7 1.3 2.8E-05 40.1 3.3 43 35-83 461-504 (623)
60 KOG0472|consensus 82.3 0.32 6.9E-06 42.8 -0.7 45 35-85 247-291 (565)
61 COG4886 Leucine-rich repeat (L 82.2 1 2.2E-05 37.6 2.3 69 31-109 107-176 (394)
62 KOG3763|consensus 79.7 1.1 2.4E-05 40.4 1.8 78 37-123 215-298 (585)
63 KOG2120|consensus 77.3 0.78 1.7E-05 39.0 0.1 67 31-103 303-370 (419)
64 KOG4579|consensus 73.9 1.5 3.3E-05 33.4 0.9 72 35-115 48-121 (177)
65 KOG1947|consensus 70.5 3.7 8E-05 34.4 2.6 15 90-104 289-303 (482)
66 KOG0444|consensus 69.6 1.4 3.1E-05 41.0 -0.1 33 66-104 338-370 (1255)
67 KOG3864|consensus 65.8 5.9 0.00013 31.7 2.6 59 38-100 149-208 (221)
68 PRK15370 E3 ubiquitin-protein 64.8 5.3 0.00011 37.4 2.5 16 40-55 367-382 (754)
69 KOG4658|consensus 64.7 6.9 0.00015 37.3 3.3 15 36-50 567-581 (889)
70 PLN03210 Resistant to P. syrin 64.5 7.3 0.00016 37.8 3.5 34 40-79 846-879 (1153)
71 KOG1909|consensus 63.0 14 0.0003 31.9 4.5 96 14-112 149-257 (382)
72 PLN03210 Resistant to P. syrin 57.9 8.5 0.00018 37.4 2.7 12 38-49 632-643 (1153)
73 smart00367 LRR_CC Leucine-rich 53.6 13 0.00029 19.0 1.9 16 39-54 1-17 (26)
74 KOG0532|consensus 50.9 9 0.0002 35.2 1.5 41 39-85 210-250 (722)
75 TIGR00864 PCC polycystin catio 49.8 10 0.00022 40.3 1.9 16 37-52 16-31 (2740)
76 KOG1947|consensus 47.1 22 0.00047 29.7 3.2 61 38-103 267-328 (482)
77 PRK15370 E3 ubiquitin-protein 44.8 8.5 0.00019 36.0 0.5 41 40-83 388-429 (754)
78 COG5238 RNA1 Ran GTPase-activa 42.3 24 0.00051 30.0 2.7 65 35-103 209-279 (388)
79 PF07723 LRR_2: Leucine Rich R 41.9 19 0.00042 18.8 1.4 22 41-62 1-22 (26)
80 COG5238 RNA1 Ran GTPase-activa 40.8 27 0.00058 29.7 2.7 41 36-79 88-130 (388)
81 KOG4658|consensus 33.1 23 0.00049 33.9 1.3 20 36-55 591-610 (889)
82 KOG4341|consensus 27.9 21 0.00046 31.6 0.2 68 36-107 160-227 (483)
83 cd02986 DLP Dim1 family, Dim1- 23.8 42 0.00091 24.1 1.1 23 11-33 2-24 (114)
No 1
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.81 E-value=9e-21 Score=145.71 Aligned_cols=83 Identities=31% Similarity=0.468 Sum_probs=52.6
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCcccCHHHHHHHHH
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNA 116 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~~Vt~~eR~~A~~ 116 (147)
..||+|+.|+|++|+|.++.++..|.. +|+|+.| .+.|||+|+.++||.+|++.+|+|+.|||..|+++||+.|+.
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~--l~~L~~L--~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~~ 160 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSS--LPKLRVL--SLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEEERQEAEK 160 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG---TT--EE--E-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-B------
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHc--CCCccee--eccCCcccchhhHHHHHHHHcChhheeCCEEccHHHhccccc
Confidence 368999999999999999999999987 9999999 799999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q psy4164 117 LNAEIRS 123 (147)
Q Consensus 117 ~~~~~~~ 123 (147)
+|..-+.
T Consensus 161 ~f~~~~~ 167 (175)
T PF14580_consen 161 LFKGKRA 167 (175)
T ss_dssp -------
T ss_pred ccccccc
Confidence 9876443
No 2
>KOG1644|consensus
Probab=99.66 E-value=2.4e-17 Score=129.44 Aligned_cols=78 Identities=32% Similarity=0.482 Sum_probs=74.3
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCcccCHHHHHHHHH
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNA 116 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~~Vt~~eR~~A~~ 116 (147)
..+|+|++|.|.||.|..+.+++.|.. ||+|++| ++.|||++..++||.||++.+|+|+.||+..|+.+||++|+.
T Consensus 85 ~~~p~l~~L~LtnNsi~~l~dl~pLa~--~p~L~~L--tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~ 160 (233)
T KOG1644|consen 85 TFLPNLKTLILTNNSIQELGDLDPLAS--CPKLEYL--TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEV 160 (233)
T ss_pred hhccccceEEecCcchhhhhhcchhcc--CCcccee--eecCCchhcccCceeEEEEecCcceEeehhhhhHHHHHHHHH
Confidence 457889999999999999999999977 9999999 999999999999999999999999999999999999999999
Q ss_pred HH
Q psy4164 117 LN 118 (147)
Q Consensus 117 ~~ 118 (147)
++
T Consensus 161 ~f 162 (233)
T KOG1644|consen 161 FF 162 (233)
T ss_pred Hh
Confidence 97
No 3
>KOG2123|consensus
Probab=99.47 E-value=1.3e-14 Score=119.14 Aligned_cols=86 Identities=31% Similarity=0.361 Sum_probs=78.0
Q ss_pred EeecchhhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCc--ccHHHHHHHHCCCCccccCcc
Q psy4164 28 EEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI--REYRAVVSTMIPQLVTLDSVF 105 (147)
Q Consensus 28 lr~~~i~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~--~~YR~~vi~~lp~L~~LD~~~ 105 (147)
..+..+..+..|.+|+.|||..|.|.+++++..|.. +|+|++| +|..||||.. .+||..|+..||+|+.||..+
T Consensus 51 NkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLkn--lpsLr~L--WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 51 NKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKN--LPSLRTL--WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred cccccchhHHHHHHHHHHHHHhcccccHHHHHHHhc--CchhhhH--hhccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 344456678899999999999999999999999998 9999999 9999999976 589999999999999999999
Q ss_pred cCHHHHHHHHHH
Q psy4164 106 ILPSEKQETNAL 117 (147)
Q Consensus 106 Vt~~eR~~A~~~ 117 (147)
||++|-++|-.-
T Consensus 127 VteeEle~ALr~ 138 (388)
T KOG2123|consen 127 VTEEELEEALRD 138 (388)
T ss_pred ccHHHHHHHHhc
Confidence 999999888554
No 4
>KOG2982|consensus
Probab=98.98 E-value=1.5e-10 Score=96.11 Aligned_cols=94 Identities=28% Similarity=0.362 Sum_probs=80.5
Q ss_pred hhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCc---ccHHHHHHHHCCCCccccCcccCHHH
Q psy4164 34 FVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI---REYRAVVSTMIPQLVTLDSVFILPSE 110 (147)
Q Consensus 34 ~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~---~~YR~~vi~~lp~L~~LD~~~Vt~~e 110 (147)
.+...+|.+-.|+|+.|+|.+|+.++.|+. +|.|..| ++..||+.+. ..-|.-+|++||++++|+|+.|+.+|
T Consensus 218 k~se~~p~~~~LnL~~~~idswasvD~Ln~--f~~l~dl--Rv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss~e 293 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGANNIDSWASVDALNG--FPQLVDL--RVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISSRE 293 (418)
T ss_pred ccCCCCCcchhhhhcccccccHHHHHHHcC--Cchhhee--eccCCcccccccCCcceEEEEeeccceEEecCcccchhh
Confidence 355678888899999999999999999988 9999999 9999999653 34588999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhc----c-hhHHHH
Q psy4164 111 KQETNALNAEIRSYLL----P-KYEKLE 133 (147)
Q Consensus 111 R~~A~~~~~~~~~~~~----~-~~~~~~ 133 (147)
|.+.|.. ++|+|+- | +|++++
T Consensus 294 r~dSEr~--fVRyym~qke~p~ky~el~ 319 (418)
T KOG2982|consen 294 RKDSERR--FVRYYMSQKELPDKYGELE 319 (418)
T ss_pred hhhhHHH--HHHHHhhhhhcchhhhhHH
Confidence 9999997 5777763 4 555554
No 5
>KOG2739|consensus
Probab=98.96 E-value=2.9e-10 Score=91.92 Aligned_cols=77 Identities=27% Similarity=0.475 Sum_probs=70.1
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCcccCHHHHHHHH
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETN 115 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~~Vt~~eR~~A~ 115 (147)
...+|+|++|+|++|+|++++.+..+.. +++|.+|| +..|+++.-.+||..|...+|+|++||+..|..+|...|.
T Consensus 87 ~e~~P~l~~l~ls~Nki~~lstl~pl~~--l~nL~~Ld--l~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~~ 162 (260)
T KOG2739|consen 87 AEKAPNLKVLNLSGNKIKDLSTLRPLKE--LENLKSLD--LFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPEAD 162 (260)
T ss_pred hhhCCceeEEeecCCccccccccchhhh--hcchhhhh--cccCCccccccHHHHHHHHhhhhccccccccCCccccccc
Confidence 4567999999999999999999999987 99999995 8899999999999999999999999999999988876654
Q ss_pred H
Q psy4164 116 A 116 (147)
Q Consensus 116 ~ 116 (147)
.
T Consensus 163 ~ 163 (260)
T KOG2739|consen 163 A 163 (260)
T ss_pred c
Confidence 4
No 6
>KOG3207|consensus
Probab=98.77 E-value=1.7e-09 Score=93.05 Aligned_cols=101 Identities=23% Similarity=0.221 Sum_probs=82.5
Q ss_pred cchhhccccccceEEEeecchh---hhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcc-cHH
Q psy4164 13 QVDQAILSEEDRVVIEEYLSVF---VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIR-EYR 88 (147)
Q Consensus 13 ~v~~~i~~~~~~l~~lr~~~i~---~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~-~YR 88 (147)
-+++++.+. +.+..+-+-++. -...|++|+.|++..|+|.+|..++.+.. +++|+.| .+.+||+...+ .-+
T Consensus 272 ~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~--l~nlk~l--~~~~n~ln~e~~~a~ 346 (505)
T KOG3207|consen 272 GLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT--LENLKHL--RITLNYLNKETDTAK 346 (505)
T ss_pred chhhhhccc-cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhc--cchhhhh--hccccccccccccee
Confidence 344555554 566655444432 24689999999999999999999999987 9999999 89999997654 337
Q ss_pred HHHHHHCCCCccccCcccCHHHHHHHHHHH
Q psy4164 89 AVVSTMIPQLVTLDSVFILPSEKQETNALN 118 (147)
Q Consensus 89 ~~vi~~lp~L~~LD~~~Vt~~eR~~A~~~~ 118 (147)
..||+++++|..|++..|.+.||+.||..+
T Consensus 347 ~~VIAr~~~l~~LN~~di~p~eRR~AEl~~ 376 (505)
T KOG3207|consen 347 LLVIARISQLVKLNDVDISPNERRDAELYY 376 (505)
T ss_pred EEeeeehhhhhhhcccccChHHhhhhhhhH
Confidence 789999999999999999999999999874
No 7
>KOG3414|consensus
Probab=98.75 E-value=2.9e-09 Score=77.89 Aligned_cols=36 Identities=50% Similarity=0.823 Sum_probs=33.7
Q ss_pred CCcccccccccccchhhccccccceEEEeecchhhh
Q psy4164 1 MSYMLGHLHNGWQVDQAILSEEDRVVIEEYLSVFVL 36 (147)
Q Consensus 1 ~~~~l~~L~~~~~v~~~i~~~~~~l~~lr~~~i~~L 36 (147)
|||++|+|+++|+||++|+++.++++++|||+-++.
T Consensus 1 ms~lLp~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp 36 (142)
T KOG3414|consen 1 MSYLLPTLHSGWEVDQAILSTEERLVVIRFGRDWDP 36 (142)
T ss_pred CceeccccccHHHHHHHHhcccceEEEEEecCCCCc
Confidence 899999999999999999999999999999986553
No 8
>KOG3763|consensus
Probab=98.61 E-value=1.4e-08 Score=89.44 Aligned_cols=69 Identities=32% Similarity=0.441 Sum_probs=58.4
Q ss_pred hccccccEEEeeCC--CccchhhhhhhhhccCccccccccccccCcccCcc----cHHHHHHHHCCCCccccCcccCHHH
Q psy4164 37 RRVNSLRTLSLYGN--PIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIR----EYRAVVSTMIPQLVTLDSVFILPSE 110 (147)
Q Consensus 37 ~~l~~L~~L~L~~N--~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~----~YR~~vi~~lp~L~~LD~~~Vt~~e 110 (147)
+..|+|++|+|++| .|.+..++.++.. +.|++| .+.|||+|..- .|-.+|...+|+|..|||.+|.++-
T Consensus 241 q~apklk~L~LS~N~~~~~~~~el~K~k~---l~Leel--~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG~ev~~~~ 315 (585)
T KOG3763|consen 241 QIAPKLKTLDLSHNHSKISSESELDKLKG---LPLEEL--VLEGNPLCTTFSDRSEYVSAIRELFPKLLRLDGVEVQPEV 315 (585)
T ss_pred HhcchhheeecccchhhhcchhhhhhhcC---CCHHHe--eecCCccccchhhhHHHHHHHHHhcchheeecCcccCccc
Confidence 47899999999999 8898888888874 679999 89999999864 3444777799999999999997643
No 9
>KOG1259|consensus
Probab=98.53 E-value=3.6e-08 Score=82.54 Aligned_cols=82 Identities=29% Similarity=0.325 Sum_probs=70.2
Q ss_pred cchhhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCC---CCccccCcccC
Q psy4164 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIP---QLVTLDSVFIL 107 (147)
Q Consensus 31 ~~i~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp---~L~~LD~~~Vt 107 (147)
+++++|.++-+|.+|++++|+|..++++....+ ||.|+.| .+.+||+....+||..|++.+. +=-+||+++-+
T Consensus 365 E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~--LPCLE~l--~L~~NPl~~~vdYRTKVLa~FGERaSE~~LD~~~~~ 440 (490)
T KOG1259|consen 365 ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGN--LPCLETL--RLTGNPLAGSVDYRTKVLARFGERASEISLDNEPGN 440 (490)
T ss_pred hhhhhhHhhhhheeccccccchhhHHHhccccc--ccHHHHH--hhcCCCccccchHHHHHHHHHhhhhhheecCCCCcc
Confidence 356788899999999999999999999999887 9999999 8999999999999999999985 45678888777
Q ss_pred HHHHHHHHH
Q psy4164 108 PSEKQETNA 116 (147)
Q Consensus 108 ~~eR~~A~~ 116 (147)
+.|-...+-
T Consensus 441 ~~ELDTV~V 449 (490)
T KOG1259|consen 441 QQELDTVLV 449 (490)
T ss_pred hhhhhHHHH
Confidence 766554433
No 10
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.19 E-value=3.9e-07 Score=67.08 Aligned_cols=36 Identities=53% Similarity=0.788 Sum_probs=29.0
Q ss_pred ccccccccccchhhccccccceEEEeecchhhhhcc
Q psy4164 4 MLGHLHNGWQVDQAILSEEDRVVIEEYLSVFVLRRV 39 (147)
Q Consensus 4 ~l~~L~~~~~v~~~i~~~~~~l~~lr~~~i~~L~~l 39 (147)
+||||+++|+||++|+++.++++++|||+-++..++
T Consensus 1 ~L~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm 36 (133)
T PF02966_consen 1 LLPHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCM 36 (133)
T ss_dssp SSEEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHH
T ss_pred CCcccCccchHHHHHhccCceEEEEEeCCCCCccHH
Confidence 689999999999999999999999999986654444
No 11
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=8.4e-06 Score=49.02 Aligned_cols=40 Identities=35% Similarity=0.534 Sum_probs=29.5
Q ss_pred ccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcc
Q psy4164 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIR 85 (147)
Q Consensus 40 ~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~ 85 (147)
++|++|++++|+|++++. .+.. ||+|+.| .+.+|++++-+
T Consensus 1 ~~L~~L~l~~N~i~~l~~--~l~~--l~~L~~L--~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP--ELSN--LPNLETL--NLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGG--HGTT--CTTSSEE--EETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCc--hHhC--CCCCCEE--EecCCCCCCCc
Confidence 578999999999998766 2444 7889999 68999887643
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.69 E-value=2.6e-05 Score=59.99 Aligned_cols=51 Identities=33% Similarity=0.489 Sum_probs=35.6
Q ss_pred cchhhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcc
Q psy4164 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIR 85 (147)
Q Consensus 31 ~~i~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~ 85 (147)
+++..+..||+|+.|+|.||+|++...+..+....+|+|+.|| |.+|+..+
T Consensus 104 ~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD----~~~V~~~E 154 (175)
T PF14580_consen 104 NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD----GQDVTEEE 154 (175)
T ss_dssp CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET----TEETTS-B
T ss_pred HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC----CEEccHHH
Confidence 3456788999999999999999999998877666799999997 77777655
No 13
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.47 E-value=0.0001 Score=44.19 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=25.1
Q ss_pred cchhh-hhccccccEEEeeCCCccchhhhh
Q psy4164 31 LSVFV-LRRVNSLRTLSLYGNPIEKIREYR 59 (147)
Q Consensus 31 ~~i~~-L~~l~~L~~L~L~~N~I~~~~~l~ 59 (147)
.++.. +..|++|+.|++++|+|++++.+.
T Consensus 14 ~~l~~~l~~l~~L~~L~l~~N~i~~i~~l~ 43 (44)
T PF12799_consen 14 TDLPPELSNLPNLETLNLSNNPISDISPLS 43 (44)
T ss_dssp SSHGGHGTTCTTSSEEEETSSCCSBEGGGT
T ss_pred cccCchHhCCCCCCEEEecCCCCCCCcCCC
Confidence 35666 889999999999999999988764
No 14
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.42 E-value=3.2e-05 Score=48.67 Aligned_cols=42 Identities=29% Similarity=0.380 Sum_probs=32.4
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcc
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPI 81 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv 81 (147)
.+..+++|+.|++++|+|+.++. +.+.. +|+|++| .+.+|++
T Consensus 20 ~f~~l~~L~~L~l~~N~l~~i~~-~~f~~--l~~L~~L--~l~~N~l 61 (61)
T PF13855_consen 20 SFSNLPNLETLDLSNNNLTSIPP-DAFSN--LPNLRYL--DLSNNNL 61 (61)
T ss_dssp TTTTGTTESEEEETSSSESEEET-TTTTT--STTESEE--EETSSSB
T ss_pred HHcCCCCCCEeEccCCccCccCH-HHHcC--CCCCCEE--eCcCCcC
Confidence 56788999999999999987754 23544 8889999 6888875
No 15
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.40 E-value=0.00014 Score=45.74 Aligned_cols=56 Identities=29% Similarity=0.373 Sum_probs=44.9
Q ss_pred ccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 40 ~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
|+|+.|++++|+|+.+.. +.+.. +++|++| .+.+|.+...+. ..+..+|+|++||-
T Consensus 1 p~L~~L~l~~n~l~~i~~-~~f~~--l~~L~~L--~l~~N~l~~i~~---~~f~~l~~L~~L~l 56 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPP-DSFSN--LPNLETL--DLSNNNLTSIPP---DAFSNLPNLRYLDL 56 (61)
T ss_dssp TTESEEEETSSTESEECT-TTTTT--GTTESEE--EETSSSESEEET---TTTTTSTTESEEEE
T ss_pred CcCcEEECCCCCCCccCH-HHHcC--CCCCCEe--EccCCccCccCH---HHHcCCCCCCEEeC
Confidence 689999999999998865 23544 8999999 699999976543 46788999998874
No 16
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=97.34 E-value=0.00015 Score=39.14 Aligned_cols=22 Identities=36% Similarity=0.586 Sum_probs=19.5
Q ss_pred ccHHHHHHHHCCCCccccCccc
Q psy4164 85 REYRAVVSTMIPQLVTLDSVFI 106 (147)
Q Consensus 85 ~~YR~~vi~~lp~L~~LD~~~V 106 (147)
++||.+|++.+|+|++||....
T Consensus 2 ~~YR~~Vi~~LPqL~~LD~~~~ 23 (26)
T smart00446 2 AHYREKVIRLLPQLRKLDXXXX 23 (26)
T ss_pred ccHHHHHHHHCCccceeccccc
Confidence 5799999999999999998643
No 17
>KOG1644|consensus
Probab=97.02 E-value=0.00028 Score=56.07 Aligned_cols=64 Identities=28% Similarity=0.362 Sum_probs=49.3
Q ss_pred chhhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 32 SVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 32 ~i~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
.+.++..++.|.+|.|++|+|+.++.. |.. .+|+|.+| .+.+|-+++-.+. .=.+.+|+|++|-
T Consensus 56 ~l~~lp~l~rL~tLll~nNrIt~I~p~--L~~-~~p~l~~L--~LtnNsi~~l~dl--~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 56 KLDNLPHLPRLHTLLLNNNRITRIDPD--LDT-FLPNLKTL--ILTNNSIQELGDL--DPLASCPKLEYLT 119 (233)
T ss_pred hcccCCCccccceEEecCCcceeeccc--hhh-hccccceE--EecCcchhhhhhc--chhccCCccceee
Confidence 346788999999999999999999774 332 48999999 8999999876542 2356677776654
No 18
>KOG1859|consensus
Probab=96.99 E-value=0.00025 Score=65.32 Aligned_cols=74 Identities=24% Similarity=0.197 Sum_probs=51.8
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCC-----CCccccCcccCHH
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIP-----QLVTLDSVFILPS 109 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp-----~L~~LD~~~Vt~~ 109 (147)
++.++++|+.|+|+.|-|....++..|-. |-.|+.| +|.|||+|-.+-||..+..++- .=-.|||..++..
T Consensus 249 gie~LksL~~LDlsyNll~~hseL~pLws--Ls~L~~L--~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDgk~l~~~ 324 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSEHSELEPLWS--LSSLIVL--WLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDGKALGGR 324 (1096)
T ss_pred hHHhhhhhhccchhHhhhhcchhhhHHHH--HHHHHHH--hhcCCccccCHHHHHHHHhHhccccCCcceEecceeccch
Confidence 34455555555555555555555555543 5677888 8999999999999999887764 4457999999877
Q ss_pred HHH
Q psy4164 110 EKQ 112 (147)
Q Consensus 110 eR~ 112 (147)
|-.
T Consensus 325 efw 327 (1096)
T KOG1859|consen 325 EFW 327 (1096)
T ss_pred hhh
Confidence 643
No 19
>KOG0531|consensus
Probab=96.88 E-value=0.00042 Score=59.09 Aligned_cols=63 Identities=25% Similarity=0.236 Sum_probs=47.9
Q ss_pred cchhh-hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCcc
Q psy4164 31 LSVFV-LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100 (147)
Q Consensus 31 ~~i~~-L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~ 100 (147)
..+.+ +.+|++|+.|+|++|.|.++.++..+ +.|+.| .+.||+++...+|.......++.|.+
T Consensus 108 ~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l-----~~L~~L--~l~~N~i~~~~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 108 EKIENLLSSLVNLQVLDLSFNKITKLEGLSTL-----TLLKEL--NLSGNLISDISGLESLKSLKLLDLSY 171 (414)
T ss_pred hhcccchhhhhcchheeccccccccccchhhc-----cchhhh--eeccCcchhccCCccchhhhcccCCc
Confidence 35667 88899999999999999998887555 449999 79999999988877633333333333
No 20
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=96.34 E-value=0.0019 Score=34.74 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=19.0
Q ss_pred cccccEEEeeCCCccchhhhh
Q psy4164 39 VNSLRTLSLYGNPIEKIREYR 59 (147)
Q Consensus 39 l~~L~~L~L~~N~I~~~~~l~ 59 (147)
+.+|+.|+|++|+|+.+++++
T Consensus 1 L~~L~~L~L~~NkI~~IEnL~ 21 (26)
T smart00365 1 LTNLEELDLSQNKIKKIENLD 21 (26)
T ss_pred CCccCEEECCCCccceecCcc
Confidence 468999999999999999876
No 21
>KOG0617|consensus
Probab=96.33 E-value=0.00082 Score=52.87 Aligned_cols=59 Identities=25% Similarity=0.392 Sum_probs=38.3
Q ss_pred cccccccccchhhccccccceEEEeecchhhhhccccccEEEeeCCCccchhhhhhhhhccCcccccc
Q psy4164 5 LGHLHNGWQVDQAILSEEDRVVIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL 72 (147)
Q Consensus 5 l~~L~~~~~v~~~i~~~~~~l~~lr~~~i~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~L 72 (147)
+|+|+....+.++-++- +|+.++ . .++..+.+|++|++.+|+|+++.. .+.. +|+|+.|
T Consensus 26 ~~gLf~~s~ITrLtLSH-NKl~~v---p-pnia~l~nlevln~~nnqie~lp~--~iss--l~klr~l 84 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSH-NKLTVV---P-PNIAELKNLEVLNLSNNQIEELPT--SISS--LPKLRIL 84 (264)
T ss_pred cccccchhhhhhhhccc-Cceeec---C-CcHHHhhhhhhhhcccchhhhcCh--hhhh--chhhhhe
Confidence 56666666666666665 666644 1 356788899999999999887643 2222 4555555
No 22
>KOG0618|consensus
Probab=95.98 E-value=0.002 Score=60.45 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=10.2
Q ss_pred hhccccccEEEeeCCCccchh
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIR 56 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~ 56 (147)
+.+++.|+.|+|+||+++.+.
T Consensus 403 ~~kle~LeeL~LSGNkL~~Lp 423 (1081)
T KOG0618|consen 403 LRKLEELEELNLSGNKLTTLP 423 (1081)
T ss_pred HhchHHhHHHhcccchhhhhh
Confidence 344445555555555554443
No 23
>KOG4579|consensus
Probab=95.42 E-value=0.0032 Score=47.79 Aligned_cols=59 Identities=29% Similarity=0.309 Sum_probs=48.9
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCc
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSV 104 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~ 104 (147)
-..|+.+++|||++|.|+++.+= +.. +|.|+.| .+..||+-..+ +||+.|.++-+||.-
T Consensus 73 t~kf~t~t~lNl~~neisdvPeE--~Aa--m~aLr~l--Nl~~N~l~~~p----~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 73 TIKFPTATTLNLANNEISDVPEE--LAA--MPALRSL--NLRFNPLNAEP----RVIAPLIKLDMLDSP 131 (177)
T ss_pred hhccchhhhhhcchhhhhhchHH--Hhh--hHHhhhc--ccccCccccch----HHHHHHHhHHHhcCC
Confidence 35778999999999999998763 654 8999999 89999998766 488888888888863
No 24
>KOG3665|consensus
Probab=95.41 E-value=0.012 Score=54.07 Aligned_cols=77 Identities=16% Similarity=0.183 Sum_probs=40.0
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhc--------------------cCccccccccccccCcccCcc-cHH--HHHHH
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVST--------------------MIPQLVTLDSVLYGNPIEKIR-EYR--AVVST 93 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~--------------------~lp~L~~Ld~~l~gNPv~~~~-~YR--~~vi~ 93 (147)
..||+|..||+++-+|+++.++..|.++ .|.+|+.|| +....-.... .-+ ...-.
T Consensus 170 ~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD--IS~~~~~~~~~ii~qYlec~~ 247 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD--ISRDKNNDDTKIIEQYLECGM 247 (699)
T ss_pred hccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee--ccccccccchHHHHHHHHhcc
Confidence 4666677777777666666655444331 156777776 3333222211 001 11223
Q ss_pred HCCCCccccCcccCHHHHHHHHH
Q psy4164 94 MIPQLVTLDSVFILPSEKQETNA 116 (147)
Q Consensus 94 ~lp~L~~LD~~~Vt~~eR~~A~~ 116 (147)
-||.|++||=+ .|+-..+..+.
T Consensus 248 ~LpeLrfLDcS-gTdi~~~~le~ 269 (699)
T KOG3665|consen 248 VLPELRFLDCS-GTDINEEILEE 269 (699)
T ss_pred cCccccEEecC-CcchhHHHHHH
Confidence 48999999976 34333333333
No 25
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.16 E-value=0.013 Score=28.17 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=11.1
Q ss_pred ccccEEEeeCCCccch
Q psy4164 40 NSLRTLSLYGNPIEKI 55 (147)
Q Consensus 40 ~~L~~L~L~~N~I~~~ 55 (147)
++|+.|+|++|+|+++
T Consensus 1 ~~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSL 16 (17)
T ss_dssp TT-SEEEETSS--SSE
T ss_pred CccCEEECCCCCCCCC
Confidence 5799999999998865
No 26
>KOG0531|consensus
Probab=95.12 E-value=0.0077 Score=51.36 Aligned_cols=46 Identities=30% Similarity=0.302 Sum_probs=32.4
Q ss_pred chhhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCc
Q psy4164 32 SVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84 (147)
Q Consensus 32 ~i~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~ 84 (147)
++.++.+++.|+.|++++|+|++++++.. +++|+.+ .+.+|.+...
T Consensus 132 ~i~~l~~l~~L~~L~l~~N~i~~~~~~~~-----l~~L~~l--~l~~n~i~~i 177 (414)
T KOG0531|consen 132 KLEGLSTLTLLKELNLSGNLISDISGLES-----LKSLKLL--DLSYNRIVDI 177 (414)
T ss_pred cccchhhccchhhheeccCcchhccCCcc-----chhhhcc--cCCcchhhhh
Confidence 56678888999999999999999888754 3445555 3455544443
No 27
>KOG2123|consensus
Probab=95.06 E-value=0.0075 Score=50.47 Aligned_cols=67 Identities=27% Similarity=0.246 Sum_probs=52.5
Q ss_pred chhhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccc--cCcccC
Q psy4164 32 SVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTL--DSVFIL 107 (147)
Q Consensus 32 ~i~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~L--D~~~Vt 107 (147)
+|+-..+|+-|++|.|+-|+|+++..+ .. |.+|+.| +|..|-|..-+. .+-+..+|+|+.| |.-+..
T Consensus 33 DIsic~kMp~lEVLsLSvNkIssL~pl---~r--CtrLkEl--YLRkN~I~sldE--L~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 33 DISICEKMPLLEVLSLSVNKISSLAPL---QR--CTRLKEL--YLRKNCIESLDE--LEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HHHHHHhcccceeEEeeccccccchhH---HH--HHHHHHH--HHHhcccccHHH--HHHHhcCchhhhHhhccCCcc
Confidence 667778999999999999999997765 33 6889999 999999887664 4456678888764 445543
No 28
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=94.99 E-value=0.01 Score=44.30 Aligned_cols=34 Identities=56% Similarity=0.990 Sum_probs=31.2
Q ss_pred CCcccccccccccchhhccccccceEEEeecchh
Q psy4164 1 MSYMLGHLHNGWQVDQAILSEEDRVVIEEYLSVF 34 (147)
Q Consensus 1 ~~~~l~~L~~~~~v~~~i~~~~~~l~~lr~~~i~ 34 (147)
||+++++|++.|.+|++|.++.+++++++|..-+
T Consensus 1 ~~~~l~~l~s~~e~d~~I~~~~~~lVVvdF~A~W 34 (142)
T PLN00410 1 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDW 34 (142)
T ss_pred CcchHhhhCCHHHHHHHHHhcCCCEEEEEEECCC
Confidence 8999999999999999999888999999998643
No 29
>KOG4194|consensus
Probab=94.87 E-value=0.012 Score=53.46 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=41.9
Q ss_pred ccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCc
Q psy4164 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSV 104 (147)
Q Consensus 40 ~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~ 104 (147)
.+|+.|+|++|.|++++. ..+.. |.+|.+| .|..|-++.-+. ++..+||+|+.||-.
T Consensus 173 ~ni~~L~La~N~It~l~~-~~F~~--lnsL~tl--kLsrNrittLp~---r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLET-GHFDS--LNSLLTL--KLSRNRITTLPQ---RSFKRLPKLESLDLN 229 (873)
T ss_pred CCceEEeecccccccccc-ccccc--cchheee--ecccCcccccCH---HHhhhcchhhhhhcc
Confidence 468888888888887654 34443 6677777 688888877664 688889999999853
No 30
>KOG2982|consensus
Probab=94.85 E-value=0.011 Score=49.94 Aligned_cols=44 Identities=32% Similarity=0.456 Sum_probs=37.3
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccC
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEK 83 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~ 83 (147)
..+..++.|+|.+|+|++|+++..+.. ++|.|+.| .+..||+..
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile-~lP~l~~L--Nls~N~L~s 111 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILE-QLPALTTL--NLSCNSLSS 111 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHh-cCccceEe--eccCCcCCC
Confidence 467889999999999999999977653 69999999 899998864
No 31
>KOG2739|consensus
Probab=94.78 E-value=0.014 Score=47.67 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=58.8
Q ss_pred eEEEeecchhhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCc
Q psy4164 25 VVIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSV 104 (147)
Q Consensus 25 l~~lr~~~i~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~ 104 (147)
+++++...++.+..+|+|+.|.++.|......++.-+.. .+|+|++| .+.||-+..... ..=++.+++|..||..
T Consensus 50 ~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e-~~P~l~~l--~ls~Nki~~lst--l~pl~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 50 VINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAE-KAPNLKVL--NLSGNKIKDLST--LRPLKELENLKSLDLF 124 (260)
T ss_pred hhccceeecccCCCcchhhhhcccCCcccccccceehhh-hCCceeEE--eecCCccccccc--cchhhhhcchhhhhcc
Confidence 334444456678899999999999997777777777765 36999999 899998765332 3356788889999984
Q ss_pred --ccCH
Q psy4164 105 --FILP 108 (147)
Q Consensus 105 --~Vt~ 108 (147)
.++.
T Consensus 125 n~~~~~ 130 (260)
T KOG2739|consen 125 NCSVTN 130 (260)
T ss_pred cCCccc
Confidence 4444
No 32
>KOG0618|consensus
Probab=94.75 E-value=0.01 Score=55.97 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=35.2
Q ss_pred hhhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCc
Q psy4164 33 VFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84 (147)
Q Consensus 33 i~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~ 84 (147)
+..+.++++|++|+|++|++..+..- ++.+ |+.|+.| .|.||-++..
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas-~~~k--le~LeeL--~LSGNkL~~L 422 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPAS-KLRK--LEELEEL--NLSGNKLTTL 422 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHH-HHhc--hHHhHHH--hcccchhhhh
Confidence 35688999999999999999977653 3444 6667777 5777766553
No 33
>KOG3207|consensus
Probab=94.40 E-value=0.02 Score=50.16 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=50.7
Q ss_pred hhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcc----cCccc-----------------H--HHH
Q psy4164 34 FVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPI----EKIRE-----------------Y--RAV 90 (147)
Q Consensus 34 ~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv----~~~~~-----------------Y--R~~ 90 (147)
.+.+.|++++.|+|++|-+..|..+.++.. .||+|+.| .+..|-+ ..... | -+.
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~e-qLp~Le~L--Nls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~ 216 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAE-QLPSLENL--NLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQW 216 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHH-hcccchhc--ccccccccCCccccchhhhhhhheEEeccCCCCHHHHHH
Confidence 367889999999999999999999988874 79999999 6666644 22111 1 456
Q ss_pred HHHHCCCCccccC
Q psy4164 91 VSTMIPQLVTLDS 103 (147)
Q Consensus 91 vi~~lp~L~~LD~ 103 (147)
+...+|+|+.|+-
T Consensus 217 ~~~~fPsl~~L~L 229 (505)
T KOG3207|consen 217 ILLTFPSLEVLYL 229 (505)
T ss_pred HHHhCCcHHHhhh
Confidence 7777888877764
No 34
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.36 E-value=0.028 Score=29.40 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=16.2
Q ss_pred cccccEEEeeCCCccchhh
Q psy4164 39 VNSLRTLSLYGNPIEKIRE 57 (147)
Q Consensus 39 l~~L~~L~L~~N~I~~~~~ 57 (147)
+++|+.|+|++|+|+.+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4689999999999998754
No 35
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.36 E-value=0.028 Score=29.40 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=16.2
Q ss_pred cccccEEEeeCCCccchhh
Q psy4164 39 VNSLRTLSLYGNPIEKIRE 57 (147)
Q Consensus 39 l~~L~~L~L~~N~I~~~~~ 57 (147)
+++|+.|+|++|+|+.+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4689999999999998754
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=94.18 E-value=0.044 Score=43.81 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=5.0
Q ss_pred HHHCCCCccccC
Q psy4164 92 STMIPQLVTLDS 103 (147)
Q Consensus 92 i~~lp~L~~LD~ 103 (147)
+..+|+|+.||-
T Consensus 217 ~~~~~~L~~L~l 228 (319)
T cd00116 217 LASLKSLEVLNL 228 (319)
T ss_pred hcccCCCCEEec
Confidence 333444444443
No 37
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.08 E-value=0.025 Score=28.76 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=14.3
Q ss_pred cccEEEeeCCCccchhh
Q psy4164 41 SLRTLSLYGNPIEKIRE 57 (147)
Q Consensus 41 ~L~~L~L~~N~I~~~~~ 57 (147)
+|++|+|++|+|+.+..
T Consensus 1 ~L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPS 17 (22)
T ss_dssp TESEEEETSSEESEEGT
T ss_pred CccEEECCCCcCEeCCh
Confidence 58999999999997643
No 38
>KOG1259|consensus
Probab=94.03 E-value=0.019 Score=48.74 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=19.5
Q ss_pred hhhhhccccccEEEeeCCCccchhhh
Q psy4164 33 VFVLRRVNSLRTLSLYGNPIEKIREY 58 (147)
Q Consensus 33 i~~L~~l~~L~~L~L~~N~I~~~~~l 58 (147)
+-.|..+++|+.|+|++|.++++++.
T Consensus 322 v~nLa~L~~L~~LDLS~N~Ls~~~Gw 347 (490)
T KOG1259|consen 322 VQNLAELPQLQLLDLSGNLLAECVGW 347 (490)
T ss_pred ehhhhhcccceEeecccchhHhhhhh
Confidence 34577788888888888888777664
No 39
>KOG0617|consensus
Probab=93.63 E-value=0.016 Score=45.74 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=44.0
Q ss_pred ecchhhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 30 YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 30 ~~~i~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
|.++.++-.+.++..|.|++|+++.+.. .... +.+|+.| .+..|.+.+-+. -|..+|+|+.|+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vpp--nia~--l~nlevl--n~~nnqie~lp~----~issl~klr~ln 85 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPP--NIAE--LKNLEVL--NLSNNQIEELPT----SISSLPKLRILN 85 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCC--cHHH--hhhhhhh--hcccchhhhcCh----hhhhchhhhhee
Confidence 5667788889999999999999988743 2333 6678888 688887776543 344444444444
No 40
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=93.55 E-value=0.089 Score=42.01 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=26.4
Q ss_pred hccccccEEEeeCCCccchhh--hhhhhhccCccccccccccccCcccC
Q psy4164 37 RRVNSLRTLSLYGNPIEKIRE--YRAVVSTMIPQLVTLDSVLYGNPIEK 83 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~--l~~L~~~~lp~L~~Ld~~l~gNPv~~ 83 (147)
..+++|+.|+|++|.|++... +.... ..+|+|+.| .+.+|++.+
T Consensus 190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~-~~~~~L~~L--~ls~n~l~~ 235 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDEGASALAETL-ASLKSLEVL--NLGDNNLTD 235 (319)
T ss_pred HhCCCCCEEeccCCccChHHHHHHHHHh-cccCCCCEE--ecCCCcCch
Confidence 345578888888887765421 21111 125777777 477777765
No 41
>KOG4237|consensus
Probab=93.51 E-value=0.019 Score=49.97 Aligned_cols=44 Identities=36% Similarity=0.554 Sum_probs=32.8
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhccCcccccccccccc-CcccC
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYG-NPIEK 83 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~g-NPv~~ 83 (147)
.++.+++|+.|+|++|+|+.+.. +.+.. +++|.+| .+.| |-|++
T Consensus 86 aF~~l~~LRrLdLS~N~Is~I~p-~AF~G--L~~l~~L--vlyg~NkI~~ 130 (498)
T KOG4237|consen 86 AFKTLHRLRRLDLSKNNISFIAP-DAFKG--LASLLSL--VLYGNNKITD 130 (498)
T ss_pred hccchhhhceecccccchhhcCh-Hhhhh--hHhhhHH--HhhcCCchhh
Confidence 36789999999999999999865 23443 6667777 6666 66654
No 42
>KOG4194|consensus
Probab=93.34 E-value=0.036 Score=50.53 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=15.5
Q ss_pred hhccccccEEEeeCCCccchhh
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIRE 57 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~ 57 (147)
-+.+++|+.|+|++|+|+.+++
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred hhhcccceeEeccccccccCCh
Confidence 4567777777777777777654
No 43
>KOG0472|consensus
Probab=93.34 E-value=0.037 Score=48.40 Aligned_cols=44 Identities=30% Similarity=0.431 Sum_probs=37.9
Q ss_pred hhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccC
Q psy4164 34 FVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEK 83 (147)
Q Consensus 34 ~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~ 83 (147)
.++..|.+|.+|+|.+|.|..+..+ +.+ +.+|++| -+.|||+..
T Consensus 499 ~~l~nm~nL~tLDL~nNdlq~IPp~--Lgn--mtnL~hL--eL~gNpfr~ 542 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDLQQIPPI--LGN--MTNLRHL--ELDGNPFRQ 542 (565)
T ss_pred HHhhhhhhcceeccCCCchhhCChh--hcc--ccceeEE--EecCCccCC
Confidence 4588999999999999999988775 666 8999999 599999984
No 44
>KOG3665|consensus
Probab=92.89 E-value=0.071 Score=49.12 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=43.5
Q ss_pred chhhhhccccccEEEeeCCCccchhhh-h---hhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 32 SVFVLRRVNSLRTLSLYGNPIEKIREY-R---AVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 32 ~i~~L~~l~~L~~L~L~~N~I~~~~~l-~---~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
++.+|-.+++|++||+|..+-.+...+ . ... -.||+|+.|| +.|.-+.+. .=..++..=|+|+.+-.
T Consensus 212 ~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~-~~LpeLrfLD--cSgTdi~~~--~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 212 DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG-MVLPELRFLD--CSGTDINEE--ILEELLNSHPNLQQIAA 282 (699)
T ss_pred hHHHHhcccCCCeeeccccccccchHHHHHHHHhc-ccCccccEEe--cCCcchhHH--HHHHHHHhCccHhhhhh
Confidence 455677788888888887766554422 1 122 1479999996 778776653 24556667777776553
No 45
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.83 E-value=0.041 Score=28.24 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=12.0
Q ss_pred cccccEEEeeCCCccch
Q psy4164 39 VNSLRTLSLYGNPIEKI 55 (147)
Q Consensus 39 l~~L~~L~L~~N~I~~~ 55 (147)
+++|+.|+|++|+|++.
T Consensus 1 ~~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDE 17 (24)
T ss_dssp -TT-SEEE-TSSBEHHH
T ss_pred CCCCCEEEccCCcCCHH
Confidence 47899999999998763
No 46
>KOG4237|consensus
Probab=92.44 E-value=0.052 Score=47.28 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=19.8
Q ss_pred hhccccccEEEeeCCCccchhh
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIRE 57 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~ 57 (147)
+..+++|+.|+|+||+|+.+++
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred HhhcccceEeccCCCccchhhh
Confidence 6789999999999999999865
No 47
>PLN03150 hypothetical protein; Provisional
Probab=92.33 E-value=0.16 Score=45.99 Aligned_cols=59 Identities=24% Similarity=0.261 Sum_probs=33.5
Q ss_pred hhccccccEEEeeCCCccc-hhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEK-IREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~-~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|+++. +.. .+.. +++|+.| .+.+|.+....- ..+..+++|+.||-
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~--~~~~--l~~L~~L--dLs~N~lsg~iP---~~l~~L~~L~~L~L 497 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPP--SLGS--ITSLEVL--DLSYNSFNGSIP---ESLGQLTSLRILNL 497 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCCh--HHhC--CCCCCEE--ECCCCCCCCCCc---hHHhcCCCCCEEEC
Confidence 5567777888888887753 221 1332 5666666 466666653211 13455666666653
No 48
>KOG1859|consensus
Probab=91.01 E-value=0.058 Score=50.32 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=22.9
Q ss_pred hhhhccccccEEEeeCCCccchhhhhhhhhccCccccccc
Q psy4164 34 FVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 73 (147)
Q Consensus 34 ~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld 73 (147)
+.|+-++.|+.|||++|++++++.+ .. ||+|++||
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~~L---r~--l~~LkhLD 215 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVDNL---RR--LPKLKHLD 215 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhHHH---Hh--cccccccc
Confidence 3566777788888888887776643 32 55555554
No 49
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=90.39 E-value=0.24 Score=46.20 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=15.2
Q ss_pred hhhccccccEEEeeCCCcc
Q psy4164 35 VLRRVNSLRTLSLYGNPIE 53 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~ 53 (147)
.+..+++|+.|+|++|++.
T Consensus 88 ~~~~l~~L~~L~Ls~n~~~ 106 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQLS 106 (968)
T ss_pred HHhCCCCCCEEECCCCccC
Confidence 3567888888888888886
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.35 E-value=0.13 Score=43.00 Aligned_cols=61 Identities=25% Similarity=0.333 Sum_probs=36.9
Q ss_pred chhhhhccc--cccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 32 SVFVLRRVN--SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 32 ~i~~L~~l~--~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
++.....+. +|+.|++++|.|.++. ..+.. +|+|+.| .+..|++++.+. ....+++|+.|+
T Consensus 130 ~i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~--l~~L~~L--~l~~N~l~~l~~----~~~~~~~L~~L~ 192 (394)
T COG4886 130 DIPPLIGLLKSNLKELDLSDNKIESLP--SPLRN--LPNLKNL--DLSFNDLSDLPK----LLSNLSNLNNLD 192 (394)
T ss_pred cCccccccchhhcccccccccchhhhh--hhhhc--ccccccc--ccCCchhhhhhh----hhhhhhhhhhee
Confidence 344444443 7888888888887763 12333 6788888 588888877553 222555555443
No 51
>KOG1909|consensus
Probab=90.30 E-value=0.51 Score=40.40 Aligned_cols=64 Identities=23% Similarity=0.266 Sum_probs=38.2
Q ss_pred hhhccccccEEEeeCCCccchhhh---hhhhhccCccccccccccccCcccCcc--cHHHHHHHHCCCCcccc
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREY---RAVVSTMIPQLVTLDSVLYGNPIEKIR--EYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l---~~L~~~~lp~L~~Ld~~l~gNPv~~~~--~YR~~vi~~lp~L~~LD 102 (147)
.+..|++|++|+|..|-++.-..+ +.|.. +|+|+.| ++..+-+.... .+-..+-...|+|++|+
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s--~~~L~El--~l~dcll~~~Ga~a~~~al~~~~p~L~vl~ 276 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSS--WPHLREL--NLGDCLLENEGAIAFVDALKESAPSLEVLE 276 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcc--cchheee--cccccccccccHHHHHHHHhccCCCCceec
Confidence 577889999999999988776554 22333 5666666 55554444332 22233334456666665
No 52
>KOG3864|consensus
Probab=89.69 E-value=0.19 Score=40.11 Aligned_cols=70 Identities=20% Similarity=0.114 Sum_probs=51.1
Q ss_pred chhhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCccc
Q psy4164 32 SVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSVFI 106 (147)
Q Consensus 32 ~i~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~~V 106 (147)
...++.+++.|+.|.+++..=-+-..++.+.. -.|+|+.| .+.|||--... =.+.+..+++|+.|+-...
T Consensus 117 Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L--~lsgC~rIT~~--GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 117 GLEHLRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDL--DLSGCPRITDG--GLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HHHHHhccchhhhheeccccchhhHHHHHhcc-cccchhee--eccCCCeechh--HHHHHHHhhhhHHHHhcCc
Confidence 34567888888888888876655556666665 47999999 59999954433 3678888888888876444
No 53
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.50 E-value=0.28 Score=26.30 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=13.5
Q ss_pred ccccEEEeeCCCccc
Q psy4164 40 NSLRTLSLYGNPIEK 54 (147)
Q Consensus 40 ~~L~~L~L~~N~I~~ 54 (147)
++|+.|+|++|.|.+
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 589999999999976
No 54
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=88.12 E-value=0.5 Score=44.08 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=7.4
Q ss_pred CccccccccccccCccc
Q psy4164 66 IPQLVTLDSVLYGNPIE 82 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~ 82 (147)
+++|+.| .+.+|.+.
T Consensus 546 l~~L~~L--~Ls~N~l~ 560 (968)
T PLN00113 546 MPVLSQL--DLSQNQLS 560 (968)
T ss_pred cccCCEE--ECCCCccc
Confidence 4455555 35555544
No 55
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.20 E-value=0.32 Score=26.14 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=17.1
Q ss_pred ccccEEEeeCCCccchhhhh
Q psy4164 40 NSLRTLSLYGNPIEKIREYR 59 (147)
Q Consensus 40 ~~L~~L~L~~N~I~~~~~l~ 59 (147)
++|+.|++++|+++++.++.
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL~ 21 (26)
T smart00364 2 PSLKELNVSNNQLTSLPELX 21 (26)
T ss_pred cccceeecCCCccccCcccc
Confidence 47999999999999987753
No 56
>KOG0444|consensus
Probab=85.99 E-value=0.33 Score=45.13 Aligned_cols=46 Identities=28% Similarity=0.278 Sum_probs=31.2
Q ss_pred hhhccccccEEEeeCCCccchhhh--hhhhh------------------ccCccccccccccccCccc
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREY--RAVVS------------------TMIPQLVTLDSVLYGNPIE 82 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l--~~L~~------------------~~lp~L~~Ld~~l~gNPv~ 82 (147)
+|..-+++-+|||++|+|..+..= -+|.. ..|-.|++| .|.+||+.
T Consensus 121 ~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL--~Ls~NPL~ 186 (1255)
T KOG0444|consen 121 NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL--KLSNNPLN 186 (1255)
T ss_pred hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhh--hcCCChhh
Confidence 577778889999999999887641 11111 012466777 59999985
No 57
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=83.93 E-value=0.59 Score=43.80 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=26.0
Q ss_pred ccccEEEeeCCCccchhhhh------------------hhhhccCccccccccccccCcccCc
Q psy4164 40 NSLRTLSLYGNPIEKIREYR------------------AVVSTMIPQLVTLDSVLYGNPIEKI 84 (147)
Q Consensus 40 ~~L~~L~L~~N~I~~~~~l~------------------~L~~~~lp~L~~Ld~~l~gNPv~~~ 84 (147)
++|+.|++++|+|+.+..+- .+. .+++|..| .+.+||++..
T Consensus 402 s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt~LP~sl~--~L~~L~~L--dLs~N~Ls~~ 460 (788)
T PRK15387 402 SELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLI--HLSSETTV--NLEGNPLSER 460 (788)
T ss_pred cCCCEEEccCCcCCCCCcchhhhhhhhhccCcccccChHHh--hccCCCeE--ECCCCCCCch
Confidence 46677777777766654320 122 25778888 6999999753
No 58
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=83.64 E-value=1.1 Score=42.12 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=13.9
Q ss_pred ccccEEEeeCCCccchhh
Q psy4164 40 NSLRTLSLYGNPIEKIRE 57 (147)
Q Consensus 40 ~~L~~L~L~~N~I~~~~~ 57 (147)
.+|+.|+|++|+|+.+..
T Consensus 382 ~~L~~LdLs~N~Lt~LP~ 399 (788)
T PRK15387 382 SGLKELIVSGNRLTSLPV 399 (788)
T ss_pred cccceEEecCCcccCCCC
Confidence 478888888888886653
No 59
>PLN03150 hypothetical protein; Provisional
Probab=82.69 E-value=1.3 Score=40.12 Aligned_cols=43 Identities=30% Similarity=0.371 Sum_probs=31.3
Q ss_pred hhhccccccEEEeeCCCccc-hhhhhhhhhccCccccccccccccCcccC
Q psy4164 35 VLRRVNSLRTLSLYGNPIEK-IREYRAVVSTMIPQLVTLDSVLYGNPIEK 83 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~-~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~ 83 (147)
.+..+++|+.|+|++|+++. +.+ .+.. +++|+.| .+.+|.+..
T Consensus 461 ~~~~l~~L~~LdLs~N~lsg~iP~--~l~~--L~~L~~L--~Ls~N~l~g 504 (623)
T PLN03150 461 SLGSITSLEVLDLSYNSFNGSIPE--SLGQ--LTSLRIL--NLNGNSLSG 504 (623)
T ss_pred HHhCCCCCCEEECCCCCCCCCCch--HHhc--CCCCCEE--ECcCCcccc
Confidence 46788999999999999974 222 2443 7888888 577887653
No 60
>KOG0472|consensus
Probab=82.32 E-value=0.32 Score=42.79 Aligned_cols=45 Identities=29% Similarity=0.449 Sum_probs=29.2
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcc
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIR 85 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~ 85 (147)
.+++++.|.+|+|..|+++.+.+ .++. +.+|..|| +..|-++.-+
T Consensus 247 ~~~~L~~l~vLDLRdNklke~Pd--e~cl--LrsL~rLD--lSNN~is~Lp 291 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNKLKEVPD--EICL--LRSLERLD--LSNNDISSLP 291 (565)
T ss_pred HhcccccceeeeccccccccCch--HHHH--hhhhhhhc--ccCCccccCC
Confidence 34567777777777777777654 2333 56677774 7777666543
No 61
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=82.22 E-value=1 Score=37.63 Aligned_cols=69 Identities=28% Similarity=0.283 Sum_probs=51.9
Q ss_pred cchhhhhccccccEEEeeCCCccchhhhhhhhhccC-ccccccccccccCcccCcccHHHHHHHHCCCCccccCcccCHH
Q psy4164 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMI-PQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 109 (147)
Q Consensus 31 ~~i~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~l-p~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~~Vt~~ 109 (147)
.++..+..++.+..|++.+|.|+++.....+ + ++|+.| .+.+|.+...+ .-+..+|+|+.||-..=.-.
T Consensus 107 ~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~----~~~nL~~L--~l~~N~i~~l~----~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 107 SNISELLELTNLTSLDLDNNNITDIPPLIGL----LKSNLKEL--DLSDNKIESLP----SPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred cCchhhhcccceeEEecCCcccccCcccccc----chhhcccc--cccccchhhhh----hhhhccccccccccCCchhh
Confidence 3445566778899999999999998775333 4 389999 69999877643 36789999999997554333
No 62
>KOG3763|consensus
Probab=79.68 E-value=1.1 Score=40.39 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=55.4
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccC--cccCcccHHHHHHHHCCCC----ccccCcccCHHH
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGN--PIEKIREYRAVVSTMIPQL----VTLDSVFILPSE 110 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gN--Pv~~~~~YR~~vi~~lp~L----~~LD~~~Vt~~e 110 (147)
.++|.+..|+|++|++..++.+..+.. ..|+|+.| .|.+| -+... .=+..+..| -.|+|-+|...=
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq-~apklk~L--~LS~N~~~~~~~-----~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQ-IAPKLKTL--DLSHNHSKISSE-----SELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHH-hcchhhee--ecccchhhhcch-----hhhhhhcCCCHHHeeecCCccccch
Confidence 478999999999999999999988874 57999999 69999 22221 112222222 257899998777
Q ss_pred HHHHHHHHHHHhh
Q psy4164 111 KQETNALNAEIRS 123 (147)
Q Consensus 111 R~~A~~~~~~~~~ 123 (147)
+..|+-.- .+++
T Consensus 287 ~~~s~yv~-~i~~ 298 (585)
T KOG3763|consen 287 SDRSEYVS-AIRE 298 (585)
T ss_pred hhhHHHHH-HHHH
Confidence 77776543 4443
No 63
>KOG2120|consensus
Probab=77.32 E-value=0.78 Score=39.04 Aligned_cols=67 Identities=24% Similarity=0.175 Sum_probs=42.9
Q ss_pred cchhhh-hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 31 LSVFVL-RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 31 ~~i~~L-~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
.+++.| +.+|+|..|+|+.|.--+-+-+..+.+ ||.|++| ++..+ ...+--...-+...|+|.+||-
T Consensus 303 sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k--f~~L~~l--SlsRC--Y~i~p~~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 303 SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK--FNYLQHL--SLSRC--YDIIPETLLELNSKPSLVYLDV 370 (419)
T ss_pred hHHHHHHHhCCceeeeccccccccCchHHHHHHh--cchheee--ehhhh--cCCChHHeeeeccCcceEEEEe
Confidence 345544 579999999999886544466666666 8888888 44433 1111112233567899999986
No 64
>KOG4579|consensus
Probab=73.86 E-value=1.5 Score=33.42 Aligned_cols=72 Identities=22% Similarity=0.248 Sum_probs=55.4
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC--cccCHHHHH
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS--VFILPSEKQ 112 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~--~~Vt~~eR~ 112 (147)
.+..-..|...+|++|.+++... ++.. .+|.+++| .+..|.+.+.+. . ++.+|.|+.|+- -++..+-|-
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~--kft~-kf~t~t~l--Nl~~neisdvPe---E-~Aam~aLr~lNl~~N~l~~~p~v 118 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPK--KFTI-KFPTATTL--NLANNEISDVPE---E-LAAMPALRSLNLRFNPLNAEPRV 118 (177)
T ss_pred HHhCCceEEEEecccchhhhCCH--HHhh-ccchhhhh--hcchhhhhhchH---H-HhhhHHhhhcccccCccccchHH
Confidence 45667788899999999998755 4542 37899999 899999998875 3 889999998886 455655566
Q ss_pred HHH
Q psy4164 113 ETN 115 (147)
Q Consensus 113 ~A~ 115 (147)
-|.
T Consensus 119 i~~ 121 (177)
T KOG4579|consen 119 IAP 121 (177)
T ss_pred HHH
Confidence 555
No 65
>KOG1947|consensus
Probab=70.54 E-value=3.7 Score=34.38 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=7.5
Q ss_pred HHHHHCCCCccccCc
Q psy4164 90 VVSTMIPQLVTLDSV 104 (147)
Q Consensus 90 ~vi~~lp~L~~LD~~ 104 (147)
.+...+|+|+.||-.
T Consensus 289 ~i~~~~~~L~~L~l~ 303 (482)
T KOG1947|consen 289 SIAERCPSLRELDLS 303 (482)
T ss_pred HHHHhcCcccEEeee
Confidence 444555555555543
No 66
>KOG0444|consensus
Probab=69.63 E-value=1.4 Score=41.05 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=20.8
Q ss_pred CccccccccccccCcccCcccHHHHHHHHCCCCccccCc
Q psy4164 66 IPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSV 104 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~ 104 (147)
|++|+.| .|..|-+-.-++ -|..||.|++||-.
T Consensus 338 C~kL~kL--~L~~NrLiTLPe----aIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 338 CVKLQKL--KLDHNRLITLPE----AIHLLPDLKVLDLR 370 (1255)
T ss_pred hHHHHHh--cccccceeechh----hhhhcCCcceeecc
Confidence 4566666 566665554443 67777777777753
No 67
>KOG3864|consensus
Probab=65.81 E-value=5.9 Score=31.71 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=41.5
Q ss_pred ccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCc-ccHHHHHHHHCCCCcc
Q psy4164 38 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI-REYRAVVSTMIPQLVT 100 (147)
Q Consensus 38 ~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~-~~YR~~vi~~lp~L~~ 100 (147)
-.++|+.|+|++|+=-+-.++..|.+ |++|+.| .+.+=|-... ...-..+=..||++..
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~--lknLr~L--~l~~l~~v~~~e~~~~~Le~aLP~c~I 208 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLK--LKNLRRL--HLYDLPYVANLELVQRQLEEALPKCDI 208 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHH--hhhhHHH--HhcCchhhhchHHHHHHHHHhCcccce
Confidence 57899999999996555577777866 8999999 6666664433 2233445567787664
No 68
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=64.76 E-value=5.3 Score=37.36 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=9.5
Q ss_pred ccccEEEeeCCCccch
Q psy4164 40 NSLRTLSLYGNPIEKI 55 (147)
Q Consensus 40 ~~L~~L~L~~N~I~~~ 55 (147)
++|+.|+|++|+|+.+
T Consensus 367 ~~L~~LdLs~N~Lt~L 382 (754)
T PRK15370 367 PTITTLDVSRNALTNL 382 (754)
T ss_pred CCcCEEECCCCcCCCC
Confidence 4566666666666554
No 69
>KOG4658|consensus
Probab=64.74 E-value=6.9 Score=37.31 Aligned_cols=15 Identities=47% Similarity=0.689 Sum_probs=12.9
Q ss_pred hhccccccEEEeeCC
Q psy4164 36 LRRVNSLRTLSLYGN 50 (147)
Q Consensus 36 L~~l~~L~~L~L~~N 50 (147)
+..+|.|++|+|++|
T Consensus 567 f~~m~~LrVLDLs~~ 581 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGN 581 (889)
T ss_pred HhhCcceEEEECCCC
Confidence 778899999999976
No 70
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=64.47 E-value=7.3 Score=37.83 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=20.8
Q ss_pred ccccEEEeeCCCccchhhhhhhhhccCccccccccccccC
Q psy4164 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGN 79 (147)
Q Consensus 40 ~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gN 79 (147)
.+|+.|+|++|.|+.+.. .+.. +++|+.| .+.++
T Consensus 846 ~nL~~L~Ls~n~i~~iP~--si~~--l~~L~~L--~L~~C 879 (1153)
T PLN03210 846 TNISDLNLSRTGIEEVPW--WIEK--FSNLSFL--DMNGC 879 (1153)
T ss_pred cccCEeECCCCCCccChH--HHhc--CCCCCEE--ECCCC
Confidence 466777777777766543 2322 6777777 46663
No 71
>KOG1909|consensus
Probab=63.02 E-value=14 Score=31.92 Aligned_cols=96 Identities=19% Similarity=0.068 Sum_probs=64.0
Q ss_pred chhhccccccceEEEeecc-----------hhhhhccccccEEEeeCCCccchhh-hhhhhhccCccccccccccccCcc
Q psy4164 14 VDQAILSEEDRVVIEEYLS-----------VFVLRRVNSLRTLSLYGNPIEKIRE-YRAVVSTMIPQLVTLDSVLYGNPI 81 (147)
Q Consensus 14 v~~~i~~~~~~l~~lr~~~-----------i~~L~~l~~L~~L~L~~N~I~~~~~-l~~L~~~~lp~L~~Ld~~l~gNPv 81 (147)
+...+.+. .++-++-+++ -..++..+.|+.+-+..|.|..-.. +-...-.++|+|+.|| +.+|-+
T Consensus 149 ~~kk~~~~-~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLd--l~DNtf 225 (382)
T KOG1909|consen 149 VNKKAASK-PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLD--LRDNTF 225 (382)
T ss_pred HHhccCCC-cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeee--cccchh
Confidence 44445554 5666654432 1357788999999999999977554 2222223589999995 999988
Q ss_pred cCcc-cHHHHHHHHCCCCccccCcccCHHHHH
Q psy4164 82 EKIR-EYRAVVSTMIPQLVTLDSVFILPSEKQ 112 (147)
Q Consensus 82 ~~~~-~YR~~vi~~lp~L~~LD~~~Vt~~eR~ 112 (147)
+... .|=...+..+|+|+.|......-+.+-
T Consensus 226 t~egs~~LakaL~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 226 TLEGSVALAKALSSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred hhHHHHHHHHHhcccchheeeccccccccccc
Confidence 7653 345556667788888888777544443
No 72
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=57.85 E-value=8.5 Score=37.39 Aligned_cols=12 Identities=33% Similarity=0.661 Sum_probs=5.6
Q ss_pred ccccccEEEeeC
Q psy4164 38 RVNSLRTLSLYG 49 (147)
Q Consensus 38 ~l~~L~~L~L~~ 49 (147)
.+++|+.|+|++
T Consensus 632 ~l~~Lk~L~Ls~ 643 (1153)
T PLN03210 632 SLTGLRNIDLRG 643 (1153)
T ss_pred cCCCCCEEECCC
Confidence 344444444444
No 73
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=53.59 E-value=13 Score=18.99 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=11.9
Q ss_pred cccccEEEeeCCC-ccc
Q psy4164 39 VNSLRTLSLYGNP-IEK 54 (147)
Q Consensus 39 l~~L~~L~L~~N~-I~~ 54 (147)
+++|+.|+|++.. |++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 5788888888875 555
No 74
>KOG0532|consensus
Probab=50.87 E-value=9 Score=35.23 Aligned_cols=41 Identities=22% Similarity=0.210 Sum_probs=30.1
Q ss_pred cccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcc
Q psy4164 39 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIR 85 (147)
Q Consensus 39 l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~ 85 (147)
.-.|..|+++.|+|+.+.- .+.+ +..|.+| .|..||+..-+
T Consensus 210 ~LpLi~lDfScNkis~iPv--~fr~--m~~Lq~l--~LenNPLqSPP 250 (722)
T KOG0532|consen 210 SLPLIRLDFSCNKISYLPV--DFRK--MRHLQVL--QLENNPLQSPP 250 (722)
T ss_pred CCceeeeecccCceeecch--hhhh--hhhheee--eeccCCCCCCh
Confidence 3467888889998888753 3443 6788888 79999997643
No 75
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=49.80 E-value=10 Score=40.26 Aligned_cols=16 Identities=31% Similarity=0.598 Sum_probs=8.6
Q ss_pred hccccccEEEeeCCCc
Q psy4164 37 RRVNSLRTLSLYGNPI 52 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I 52 (147)
..+++|+.|+|++|++
T Consensus 16 ~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 16 ANLCNLSEIDLSGNPF 31 (2740)
T ss_pred ccCCCceEEEeeCCcc
Confidence 3445555555555555
No 76
>KOG1947|consensus
Probab=47.05 E-value=22 Score=29.71 Aligned_cols=61 Identities=25% Similarity=0.209 Sum_probs=37.9
Q ss_pred ccccccEEEeeCCC-ccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 38 RVNSLRTLSLYGNP-IEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 38 ~l~~L~~L~L~~N~-I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
.+++|+.|.+.+.. +++ +++..+.. .+|+|++| .+.++....+...... ...+|+|+.|.-
T Consensus 267 ~c~~L~~L~l~~c~~lt~-~gl~~i~~-~~~~L~~L--~l~~c~~~~d~~l~~~-~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTD-EGLVSIAE-RCPSLREL--DLSGCHGLTDSGLEAL-LKNCPNLRELKL 328 (482)
T ss_pred hCCCcceEccCCCCccch-hHHHHHHH-hcCcccEE--eeecCccchHHHHHHH-HHhCcchhhhhh
Confidence 47888888865555 444 44544442 47888888 5776665544445555 445887666543
No 77
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=44.84 E-value=8.5 Score=36.00 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=31.7
Q ss_pred ccccEEEeeCCCccchhh-hhhhhhccCccccccccccccCcccC
Q psy4164 40 NSLRTLSLYGNPIEKIRE-YRAVVSTMIPQLVTLDSVLYGNPIEK 83 (147)
Q Consensus 40 ~~L~~L~L~~N~I~~~~~-l~~L~~~~lp~L~~Ld~~l~gNPv~~ 83 (147)
..|+.|++++|+|..+.+ +..+.. .+|++..| .+.+||+..
T Consensus 388 ~sL~~LdLs~N~L~~LP~sl~~~~~-~~~~l~~L--~L~~Npls~ 429 (754)
T PRK15370 388 AALQIMQASRNNLVRLPESLPHFRG-EGPQPTRI--IVEYNPFSE 429 (754)
T ss_pred HHHHHHhhccCCcccCchhHHHHhh-cCCCccEE--EeeCCCccH
Confidence 379999999999998765 444432 36889999 699999964
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=42.35 E-value=24 Score=29.96 Aligned_cols=65 Identities=22% Similarity=0.170 Sum_probs=38.6
Q ss_pred hhhccccccEEEeeCCCccchhhh---hhhhhccCccccccccccccCcccCc---ccHHHHHHHHCCCCccccC
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREY---RAVVSTMIPQLVTLDSVLYGNPIEKI---REYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l---~~L~~~~lp~L~~Ld~~l~gNPv~~~---~~YR~~vi~~lp~L~~LD~ 103 (147)
++..+++|++|+|+.|-++..... +.++. .|.|+.| .+..+-+... .-+|.+--...|+|..|-+
T Consensus 209 gl~y~~~LevLDlqDNtft~~gS~~La~al~~--W~~lrEL--~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~ 279 (388)
T COG5238 209 GLFYSHSLEVLDLQDNTFTLEGSRYLADALCE--WNLLREL--RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPG 279 (388)
T ss_pred HHHHhCcceeeeccccchhhhhHHHHHHHhcc--cchhhhc--cccchhhccccHHHHHHHhhhhcCCCcccccc
Confidence 467889999999999988775543 12333 5667777 5555544332 1234444445566665544
No 79
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=41.93 E-value=19 Score=18.80 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=16.2
Q ss_pred cccEEEeeCCCccchhhhhhhh
Q psy4164 41 SLRTLSLYGNPIEKIREYRAVV 62 (147)
Q Consensus 41 ~L~~L~L~~N~I~~~~~l~~L~ 62 (147)
+|++|.|....+.+-+.+..|.
T Consensus 1 sLKtL~L~~v~f~~~~~l~~Ll 22 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLL 22 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhh
Confidence 4788888888887766666654
No 80
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=40.78 E-value=27 Score=29.66 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=21.7
Q ss_pred hhccccccEEEeeCCCccc--hhhhhhhhhccCccccccccccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEK--IREYRAVVSTMIPQLVTLDSVLYGN 79 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~--~~~l~~L~~~~lp~L~~Ld~~l~gN 79 (147)
|-+||+|+..+||.|.+.. .+.+..+.. +-..|++| .+..|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is-~~t~l~HL--~l~Nn 130 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLIS-SSTDLVHL--KLNNN 130 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHh-cCCCceeE--EeecC
Confidence 4466777777777776643 333433332 23455555 44444
No 81
>KOG4658|consensus
Probab=33.14 E-value=23 Score=33.89 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=14.4
Q ss_pred hhccccccEEEeeCCCccch
Q psy4164 36 LRRVNSLRTLSLYGNPIEKI 55 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~ 55 (147)
+..+-+|++|+|++..|..+
T Consensus 591 I~~Li~LryL~L~~t~I~~L 610 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTGISHL 610 (889)
T ss_pred HhhhhhhhcccccCCCcccc
Confidence 45677778888888887754
No 82
>KOG4341|consensus
Probab=27.88 E-value=21 Score=31.61 Aligned_cols=68 Identities=13% Similarity=0.039 Sum_probs=39.4
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCcccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSVFIL 107 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~~Vt 107 (147)
...+|+++.|.+.+..--+-..+..+.. .+++|++| .+.+.+.-.... =.++..-+|+|++|+-+-.+
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~-~C~~l~~l--~L~~c~~iT~~~-Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLAR-YCRKLRHL--NLHSCSSITDVS-LKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHH-hcchhhhh--hhcccchhHHHH-HHHHHHhhhhHHHhhhccCc
Confidence 4567788877777765322233344443 57888888 466655432221 23466677777777765443
No 83
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=23.80 E-value=42 Score=24.08 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=19.2
Q ss_pred cccchhhccccccceEEEeecch
Q psy4164 11 GWQVDQAILSEEDRVVIEEYLSV 33 (147)
Q Consensus 11 ~~~v~~~i~~~~~~l~~lr~~~i 33 (147)
..++|++|.++.+++++++|..-
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~ 24 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRD 24 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCC
Confidence 35688999988899999999863
Done!