Query psy4164
Match_columns 147
No_of_seqs 150 out of 1089
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 18:32:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a9n_A U2A', U2A'; complex (nu 99.3 1.1E-11 3.6E-16 91.5 8.6 81 36-120 84-164 (176)
2 3rw6_A Nuclear RNA export fact 99.3 3.3E-12 1.1E-16 102.6 5.1 67 37-108 193-263 (267)
3 1ds9_A Outer arm dynein; leuci 99.1 9.9E-12 3.4E-16 93.2 2.1 82 30-115 105-193 (198)
4 2ell_A Acidic leucine-rich nuc 98.7 2.5E-09 8.4E-14 77.7 1.4 71 37-111 92-162 (168)
5 2je0_A Acidic leucine-rich nuc 98.6 5.8E-08 2E-12 69.0 5.8 64 37-104 85-148 (149)
6 1dce_A Protein (RAB geranylger 98.1 1.7E-06 6E-11 75.2 4.9 66 33-102 501-566 (567)
7 1xeu_A Internalin C; cellular 97.9 2.7E-07 9.1E-12 72.3 -4.3 73 35-114 145-217 (263)
8 3e6j_A Variable lymphocyte rec 97.8 5.8E-06 2E-10 63.1 1.5 71 37-112 132-206 (229)
9 1h6t_A Internalin B; cell adhe 97.8 3.1E-06 1E-10 67.0 -0.4 73 34-113 172-244 (291)
10 4ezg_A Putative uncharacterize 97.6 5.7E-05 1.9E-09 55.9 4.4 57 35-103 131-188 (197)
11 1h6t_A Internalin B; cell adhe 97.5 0.0001 3.5E-09 58.1 4.8 16 66-83 155-170 (291)
12 1xeu_A Internalin C; cellular 97.5 5.9E-05 2E-09 58.8 3.2 59 33-103 121-179 (263)
13 1m9s_A Internalin B; cell inva 97.4 1.8E-05 6.2E-10 69.4 -0.5 69 35-110 170-238 (605)
14 1h6u_A Internalin H; cell adhe 97.4 0.00016 5.4E-09 57.4 5.0 20 36-55 147-166 (308)
15 2ell_A Acidic leucine-rich nuc 97.4 0.00012 4E-09 52.5 3.5 62 34-103 65-127 (168)
16 4fmz_A Internalin; leucine ric 97.4 0.00024 8.4E-09 56.2 5.6 23 34-56 259-281 (347)
17 1h6u_A Internalin H; cell adhe 97.4 0.00018 6.1E-09 57.1 4.7 23 35-57 124-146 (308)
18 2je0_A Acidic leucine-rich nuc 97.3 0.00012 4.2E-09 51.5 3.1 62 34-103 58-120 (149)
19 2r9u_A Variable lymphocyte rec 97.3 0.00016 5.4E-09 53.1 3.8 40 38-82 79-118 (174)
20 1a9n_A U2A', U2A'; complex (nu 97.3 0.0001 3.5E-09 53.6 2.4 63 34-103 58-120 (176)
21 1m9s_A Internalin B; cell inva 97.3 0.00019 6.4E-09 62.9 4.5 20 36-55 127-146 (605)
22 4ezg_A Putative uncharacterize 97.3 0.00019 6.5E-09 53.0 3.9 15 38-52 86-100 (197)
23 4fmz_A Internalin; leucine ric 97.2 0.0003 1E-08 55.7 4.5 55 36-102 84-138 (347)
24 3g39_A Variable lymphocyte rec 97.1 0.00017 6E-09 52.5 2.4 59 36-102 50-108 (170)
25 1dce_A Protein (RAB geranylger 97.1 0.00038 1.3E-08 60.4 4.8 58 35-103 481-540 (567)
26 2wfh_A SLIT homolog 2 protein 97.1 0.00023 8E-09 52.9 2.7 60 36-103 74-133 (193)
27 2r9u_A Variable lymphocyte rec 97.1 0.00022 7.4E-09 52.3 2.4 61 35-103 52-112 (174)
28 3rfs_A Internalin B, repeat mo 97.0 0.00031 1E-08 54.5 3.0 23 34-56 57-79 (272)
29 4g8a_A TOLL-like receptor 4; l 97.0 0.0002 6.9E-09 60.3 1.8 21 36-56 72-92 (635)
30 1o6v_A Internalin A; bacterial 96.9 0.0007 2.4E-08 56.2 4.5 55 36-102 86-140 (466)
31 4glp_A Monocyte differentiatio 96.9 0.00094 3.2E-08 52.5 4.9 66 36-103 165-231 (310)
32 2v9t_B SLIT homolog 2 protein 96.9 0.00064 2.2E-08 51.4 3.5 32 66-102 127-158 (220)
33 3rfs_A Internalin B, repeat mo 96.9 0.00054 1.8E-08 53.0 3.1 21 35-55 80-100 (272)
34 1o6v_A Internalin A; bacterial 96.9 0.00071 2.4E-08 56.2 4.0 62 31-104 59-120 (466)
35 2ca6_A RAN GTPase-activating p 96.8 0.00021 7.1E-09 57.8 0.5 61 39-101 273-335 (386)
36 3rw6_A Nuclear RNA export fact 96.8 0.0007 2.4E-08 53.9 3.4 63 37-107 167-233 (267)
37 1wwl_A Monocyte differentiatio 96.8 0.0015 5.2E-08 51.4 5.4 35 66-102 200-234 (312)
38 2wfh_A SLIT homolog 2 protein 96.8 0.0006 2.1E-08 50.6 2.8 61 35-103 49-109 (193)
39 3e6j_A Variable lymphocyte rec 96.8 0.00088 3E-08 50.8 3.5 59 36-103 108-166 (229)
40 1w8a_A SLIT protein; signaling 96.8 0.00041 1.4E-08 51.3 1.6 60 36-103 74-133 (192)
41 1w8a_A SLIT protein; signaling 96.7 0.00042 1.4E-08 51.2 1.5 43 36-83 98-140 (192)
42 1ds9_A Outer arm dynein; leuci 96.7 0.00018 6.2E-09 53.2 -0.7 60 33-103 63-122 (198)
43 3g39_A Variable lymphocyte rec 96.7 0.00092 3.2E-08 48.5 3.1 44 36-84 74-117 (170)
44 3m19_A Variable lymphocyte rec 96.7 0.00096 3.3E-08 50.9 3.1 60 36-103 127-186 (251)
45 2v70_A SLIT-2, SLIT homolog 2 96.6 0.0012 4.2E-08 49.7 3.5 32 66-102 128-159 (220)
46 2v9t_B SLIT homolog 2 protein 96.6 0.0007 2.4E-08 51.1 2.0 60 36-103 76-135 (220)
47 4g8a_A TOLL-like receptor 4; l 96.6 0.00079 2.7E-08 56.7 2.5 20 36-55 96-115 (635)
48 2o6r_A Variable lymphocyte rec 96.6 0.00085 2.9E-08 48.4 2.4 60 36-103 72-131 (177)
49 2v70_A SLIT-2, SLIT homolog 2 96.6 0.00091 3.1E-08 50.5 2.5 60 36-103 77-136 (220)
50 3zyj_A Leucine-rich repeat-con 96.5 0.00095 3.2E-08 55.0 2.4 14 66-81 278-291 (440)
51 2o6r_A Variable lymphocyte rec 96.5 0.0011 3.6E-08 47.9 2.4 61 36-104 48-108 (177)
52 2xot_A Amphoterin-induced prot 96.5 0.0015 5.1E-08 52.7 3.3 44 36-84 108-151 (361)
53 2o6s_A Variable lymphocyte rec 96.5 0.0011 3.8E-08 48.9 2.4 59 37-103 97-155 (208)
54 2ifg_A High affinity nerve gro 96.5 0.0015 5.3E-08 51.8 3.2 43 36-83 52-94 (347)
55 3bz5_A Internalin-J, INLJ; leu 96.5 0.0014 4.7E-08 55.1 2.9 30 66-103 105-134 (457)
56 3m19_A Variable lymphocyte rec 96.5 0.0011 3.8E-08 50.5 2.2 59 37-103 80-138 (251)
57 3v47_A TOLL-like receptor 5B a 96.4 0.0014 4.9E-08 53.5 2.9 61 35-103 342-402 (455)
58 3zyj_A Leucine-rich repeat-con 96.4 0.0014 4.9E-08 53.9 2.9 60 36-103 108-167 (440)
59 2o6q_A Variable lymphocyte rec 96.4 0.0017 5.9E-08 50.0 3.1 60 36-103 153-212 (270)
60 2ast_B S-phase kinase-associat 96.4 0.0032 1.1E-07 49.3 4.7 63 36-104 138-203 (336)
61 2o6s_A Variable lymphocyte rec 96.4 0.0013 4.6E-08 48.5 2.4 59 37-103 73-131 (208)
62 2xot_A Amphoterin-induced prot 96.4 0.0011 3.6E-08 53.6 1.7 60 36-103 84-143 (361)
63 2ca6_A RAN GTPase-activating p 96.3 0.0034 1.2E-07 50.6 4.3 66 36-103 240-310 (386)
64 3o6n_A APL1; leucine-rich repe 96.3 0.0027 9.2E-08 51.2 3.6 29 66-102 317-345 (390)
65 2ifg_A High affinity nerve gro 96.3 0.0013 4.6E-08 52.2 1.8 64 32-103 23-87 (347)
66 4fcg_A Uncharacterized protein 96.3 0.002 6.7E-08 51.5 2.7 40 37-82 203-242 (328)
67 4fcg_A Uncharacterized protein 96.3 0.0025 8.7E-08 50.8 3.4 58 36-103 100-157 (328)
68 3o53_A Protein LRIM1, AGAP0063 96.3 0.0011 3.8E-08 52.3 1.2 60 38-107 189-250 (317)
69 3zyi_A Leucine-rich repeat-con 96.2 0.0019 6.5E-08 53.4 2.5 60 36-103 119-178 (452)
70 2z7x_B TOLL-like receptor 1, v 96.2 0.0026 8.8E-08 53.1 3.3 59 35-103 64-122 (520)
71 3o6n_A APL1; leucine-rich repe 96.2 0.0025 8.4E-08 51.4 2.9 32 66-102 140-171 (390)
72 2z62_A TOLL-like receptor 4, v 96.2 0.0037 1.3E-07 48.0 3.8 60 37-103 97-156 (276)
73 2z66_A Variable lymphocyte rec 96.2 0.0011 3.8E-08 51.7 0.8 42 36-81 97-138 (306)
74 1p9a_G Platelet glycoprotein I 96.2 0.0017 6E-08 51.0 1.9 33 66-103 123-155 (290)
75 3zyi_A Leucine-rich repeat-con 96.2 0.0025 8.6E-08 52.7 2.9 14 66-81 289-302 (452)
76 2o6q_A Variable lymphocyte rec 96.2 0.0022 7.4E-08 49.4 2.3 33 66-103 132-164 (270)
77 2z80_A TOLL-like receptor 2, v 96.2 0.0031 1E-07 50.3 3.3 19 36-54 72-90 (353)
78 3bz5_A Internalin-J, INLJ; leu 96.1 0.0025 8.5E-08 53.5 2.8 29 66-102 126-154 (457)
79 1ozn_A Reticulon 4 receptor; N 96.1 0.0033 1.1E-07 48.5 3.3 33 66-103 200-232 (285)
80 1xku_A Decorin; proteoglycan, 96.1 0.0031 1.1E-07 49.6 3.1 60 35-103 211-270 (330)
81 4b8c_D Glucose-repressible alc 96.0 0.0037 1.2E-07 55.6 3.5 58 36-103 266-323 (727)
82 3rfe_A Platelet glycoprotein I 96.0 0.0036 1.2E-07 44.2 2.8 39 38-81 28-67 (130)
83 3oja_B Anopheles plasmodium-re 96.0 0.0037 1.3E-07 53.7 3.4 30 66-103 323-352 (597)
84 2ft3_A Biglycan; proteoglycan, 96.0 0.0032 1.1E-07 49.7 2.7 59 36-103 213-271 (332)
85 2z80_A TOLL-like receptor 2, v 96.0 0.0031 1.1E-07 50.3 2.5 60 36-102 96-155 (353)
86 2z66_A Variable lymphocyte rec 96.0 0.0025 8.7E-08 49.6 2.0 58 37-102 196-254 (306)
87 1p9a_G Platelet glycoprotein I 96.0 0.0024 8.3E-08 50.1 1.9 33 66-103 99-131 (290)
88 2ast_B S-phase kinase-associat 96.0 0.0042 1.4E-07 48.6 3.2 59 38-103 220-279 (336)
89 3a79_B TLR6, VLRB.59, TOLL-lik 96.0 0.0043 1.5E-07 52.6 3.5 57 36-102 96-152 (562)
90 3oja_B Anopheles plasmodium-re 95.9 0.0038 1.3E-07 53.6 2.9 59 37-103 120-178 (597)
91 2z62_A TOLL-like receptor 4, v 95.9 0.0073 2.5E-07 46.3 4.2 45 36-84 120-164 (276)
92 3e4g_A ATP synthase subunit S, 95.9 0.0047 1.6E-07 46.4 3.0 68 33-106 78-149 (176)
93 3g06_A SSPH2 (leucine-rich rep 95.9 0.0068 2.3E-07 53.3 4.5 39 39-83 260-298 (622)
94 2z81_A CD282 antigen, TOLL-lik 95.8 0.0048 1.6E-07 51.6 3.1 61 36-103 70-130 (549)
95 1wwl_A Monocyte differentiatio 95.8 0.004 1.4E-07 49.0 2.5 63 37-103 198-260 (312)
96 2z81_A CD282 antigen, TOLL-lik 95.8 0.0057 1.9E-07 51.1 3.5 56 38-103 449-504 (549)
97 1ozn_A Reticulon 4 receptor; N 95.8 0.0039 1.3E-07 48.1 2.2 13 40-52 105-117 (285)
98 1xku_A Decorin; proteoglycan, 95.8 0.0091 3.1E-07 47.0 4.4 18 37-54 97-114 (330)
99 3ogk_B Coronatine-insensitive 95.7 0.0066 2.3E-07 51.1 3.6 59 38-102 461-519 (592)
100 3a79_B TLR6, VLRB.59, TOLL-lik 95.7 0.0044 1.5E-07 52.5 2.5 59 35-104 71-129 (562)
101 2z7x_B TOLL-like receptor 1, v 95.7 0.0049 1.7E-07 51.4 2.6 59 35-104 40-98 (520)
102 3goz_A Leucine-rich repeat-con 95.7 0.018 6.1E-07 46.2 5.8 61 40-104 80-146 (362)
103 3oja_A Leucine-rich immune mol 95.6 0.0033 1.1E-07 53.0 1.4 39 39-83 190-228 (487)
104 2id5_A Lingo-1, leucine rich r 95.6 0.0036 1.2E-07 51.7 1.6 20 36-55 52-71 (477)
105 3o53_A Protein LRIM1, AGAP0063 95.6 0.004 1.4E-07 49.1 1.8 43 35-84 53-95 (317)
106 2id5_A Lingo-1, leucine rich r 95.6 0.0048 1.6E-07 51.0 2.1 20 36-55 76-95 (477)
107 1ogq_A PGIP-2, polygalacturona 95.6 0.0066 2.3E-07 47.9 2.8 18 36-53 97-114 (313)
108 2z63_A TOLL-like receptor 4, v 95.5 0.0094 3.2E-07 49.9 3.8 59 36-103 96-156 (570)
109 3oja_A Leucine-rich immune mol 95.4 0.0056 1.9E-07 51.6 2.2 53 35-102 53-105 (487)
110 2z63_A TOLL-like receptor 4, v 95.4 0.0045 1.5E-07 51.8 1.4 34 66-104 99-132 (570)
111 2xwt_C Thyrotropin receptor; s 95.4 0.0038 1.3E-07 47.0 0.9 20 38-57 103-122 (239)
112 3v47_A TOLL-like receptor 5B a 95.4 0.0049 1.7E-07 50.3 1.5 62 36-103 75-136 (455)
113 4glp_A Monocyte differentiatio 95.4 0.0045 1.5E-07 48.6 1.2 43 37-83 194-238 (310)
114 3vq2_A TLR4, TOLL-like recepto 95.2 0.0065 2.2E-07 51.5 1.9 59 37-103 77-135 (606)
115 4b8c_D Glucose-repressible alc 95.2 0.0075 2.6E-07 53.6 2.4 58 36-103 243-300 (727)
116 3g06_A SSPH2 (leucine-rich rep 95.2 0.013 4.6E-07 51.4 3.8 19 38-56 79-97 (622)
117 3t6q_A CD180 antigen; protein- 95.2 0.0071 2.4E-07 51.3 2.0 36 66-103 448-483 (606)
118 1ogq_A PGIP-2, polygalacturona 95.2 0.0098 3.4E-07 46.9 2.7 58 36-103 217-275 (313)
119 1z7x_W Ribonuclease inhibitor; 95.2 0.011 3.9E-07 48.1 3.1 64 36-103 52-120 (461)
120 3rgz_A Protein brassinosteroid 95.1 0.0066 2.3E-07 53.8 1.7 17 36-52 122-138 (768)
121 3t6q_A CD180 antigen; protein- 95.1 0.009 3.1E-07 50.6 2.4 31 66-102 499-529 (606)
122 3un9_A NLR family member X1; l 95.0 0.016 5.5E-07 47.4 3.6 43 37-83 208-253 (372)
123 3cvr_A Invasion plasmid antige 94.9 0.016 5.4E-07 50.5 3.5 18 66-85 159-176 (571)
124 4eco_A Uncharacterized protein 94.9 0.014 4.9E-07 50.6 3.2 54 41-102 489-542 (636)
125 2p1m_B Transport inhibitor res 94.9 0.011 3.8E-07 49.6 2.4 58 39-103 455-513 (594)
126 2p1m_B Transport inhibitor res 94.8 0.035 1.2E-06 46.6 5.3 58 37-100 478-535 (594)
127 3e4g_A ATP synthase subunit S, 94.8 0.026 8.8E-07 42.3 4.0 56 40-100 114-171 (176)
128 1ziw_A TOLL-like receptor 3; i 94.7 0.017 5.9E-07 49.7 3.2 61 36-104 69-129 (680)
129 2ft3_A Biglycan; proteoglycan, 94.7 0.037 1.3E-06 43.5 4.8 42 36-83 237-278 (332)
130 1ziw_A TOLL-like receptor 3; i 94.7 0.018 6.3E-07 49.5 3.2 15 39-53 535-549 (680)
131 2xwt_C Thyrotropin receptor; s 94.6 0.0067 2.3E-07 45.6 0.2 42 37-83 77-119 (239)
132 3vq2_A TLR4, TOLL-like recepto 94.5 0.01 3.5E-07 50.3 1.1 18 38-55 397-414 (606)
133 1io0_A Tropomodulin; LRR prote 94.4 0.037 1.3E-06 40.6 4.0 66 37-105 90-160 (185)
134 3j0a_A TOLL-like receptor 5; m 94.2 0.036 1.2E-06 49.5 4.2 17 37-53 94-110 (844)
135 3ogk_B Coronatine-insensitive 94.2 0.036 1.2E-06 46.6 3.9 67 37-106 161-230 (592)
136 4ecn_A Leucine-rich repeat pro 94.2 0.013 4.4E-07 53.6 1.2 64 36-103 511-580 (876)
137 4ecn_A Leucine-rich repeat pro 94.2 0.027 9.2E-07 51.5 3.3 55 41-103 729-783 (876)
138 1jl5_A Outer protein YOPM; leu 94.1 0.022 7.6E-07 47.6 2.5 17 40-56 131-147 (454)
139 4ay9_X Follicle-stimulating ho 93.9 0.0089 3E-07 47.8 -0.3 19 36-54 50-68 (350)
140 1jl5_A Outer protein YOPM; leu 93.9 0.025 8.7E-07 47.2 2.5 16 38-53 193-208 (454)
141 3j0a_A TOLL-like receptor 5; m 93.9 0.019 6.4E-07 51.4 1.7 63 35-103 68-130 (844)
142 1io0_A Tropomodulin; LRR prote 93.8 0.049 1.7E-06 39.9 3.7 72 35-110 60-139 (185)
143 3rgz_A Protein brassinosteroid 93.8 0.028 9.6E-07 49.7 2.6 17 37-53 175-191 (768)
144 3goz_A Leucine-rich repeat-con 93.8 0.055 1.9E-06 43.3 4.1 69 35-105 45-118 (362)
145 1z7x_W Ribonuclease inhibitor; 93.7 0.031 1E-06 45.5 2.6 64 36-105 24-94 (461)
146 3cvr_A Invasion plasmid antige 93.7 0.02 6.9E-07 49.8 1.5 18 67-86 180-197 (571)
147 4eco_A Uncharacterized protein 93.6 0.035 1.2E-06 48.2 2.8 63 35-104 201-281 (636)
148 2ra8_A Uncharacterized protein 91.4 0.07 2.4E-06 43.7 1.7 69 38-109 250-322 (362)
149 2ra8_A Uncharacterized protein 91.2 0.043 1.5E-06 45.0 0.3 43 38-84 277-322 (362)
150 3un9_A NLR family member X1; l 89.9 0.25 8.5E-06 40.2 3.8 70 36-109 179-254 (372)
151 4ay9_X Follicle-stimulating ho 87.8 0.25 8.5E-06 39.2 2.3 40 39-83 29-68 (350)
152 2av4_A Thioredoxin-like protei 86.0 0.23 7.9E-06 36.8 1.1 32 1-32 19-50 (160)
153 3sb4_A Hypothetical leucine ri 80.2 0.51 1.7E-05 37.0 1.0 36 39-79 225-260 (329)
154 3sb4_A Hypothetical leucine ri 67.9 1.8 6.2E-05 33.7 1.3 21 36-57 246-266 (329)
155 1pgv_A TMD-1, tropomodulin TMD 66.7 17 0.00057 27.2 6.5 22 90-111 151-172 (197)
156 1pgv_A TMD-1, tropomodulin TMD 60.9 7.5 0.00026 29.1 3.6 64 35-103 65-133 (197)
157 3rfe_A Platelet glycoprotein I 54.6 7.3 0.00025 26.7 2.4 19 35-53 50-68 (130)
158 4fdw_A Leucine rich hypothetic 35.6 13 0.00043 30.3 1.3 23 35-57 175-197 (401)
159 1qgv_A Spliceosomal protein U5 27.2 27 0.00094 23.7 1.7 31 1-31 1-31 (142)
160 4h09_A Hypothetical leucine ri 26.8 27 0.00093 27.3 1.8 34 36-72 282-315 (379)
161 3gix_A Thioredoxin-like protei 26.1 24 0.00081 24.3 1.2 31 1-31 1-31 (149)
No 1
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=1.1e-11 Score=91.47 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=73.6
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCcccCHHHHHHHH
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETN 115 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~~Vt~~eR~~A~ 115 (147)
+..+++|+.|+|++|+|+++..+..+.. +++|+.| .+.+||++..+.||..++..+|+|+.||...++.+||..|+
T Consensus 84 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~--l~~L~~L--~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~~~~ 159 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVELGDLDPLAS--LKSLTYL--CILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAE 159 (176)
T ss_dssp HHHCTTCCEEECCSCCCCCGGGGGGGGG--CTTCCEE--ECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHHHHH
T ss_pred hhcCCCCCEEECCCCcCCcchhhHhhhc--CCCCCEE--EecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHHHHHH
Confidence 3788999999999999999888777766 8999999 69999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy4164 116 ALNAE 120 (147)
Q Consensus 116 ~~~~~ 120 (147)
.++..
T Consensus 160 ~~~~~ 164 (176)
T 1a9n_A 160 KMFKG 164 (176)
T ss_dssp HTTC-
T ss_pred HHHhc
Confidence 88644
No 2
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=99.26 E-value=3.3e-12 Score=102.62 Aligned_cols=67 Identities=27% Similarity=0.452 Sum_probs=61.1
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccC----cccHHHHHHHHCCCCccccCcccCH
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEK----IREYRAVVSTMIPQLVTLDSVFILP 108 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~----~~~YR~~vi~~lp~L~~LD~~~Vt~ 108 (147)
..+++|+.|+|++|+|+++++++.+.. + +|++| .+.|||+|. .++||..+++.+|+|+.|||.+|++
T Consensus 193 ~~l~~L~~L~Ls~N~i~~~~~l~~l~~--l-~L~~L--~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~p 263 (267)
T 3rw6_A 193 QKAPNLKILNLSGNELKSERELDKIKG--L-KLEEL--WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPP 263 (267)
T ss_dssp HHSTTCCEEECTTSCCCSGGGGGGGTT--S-CCSEE--ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCCC
T ss_pred hhCCCCCEEECCCCccCCchhhhhccc--C-CcceE--EccCCcCccccCcchhHHHHHHHHCcccCeECCcCCCC
Confidence 489999999999999999999888875 5 89999 799999996 4689999999999999999999975
No 3
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=9.9e-12 Score=93.24 Aligned_cols=82 Identities=28% Similarity=0.406 Sum_probs=70.6
Q ss_pred ecchhhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCc-------ccHHHHHHHHCCCCcccc
Q psy4164 30 YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI-------REYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 30 ~~~i~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~-------~~YR~~vi~~lp~L~~LD 102 (147)
+..+..+..+++|+.|+|++|+|+++..+..+.. +++|++| .+.+||++.. ..|+..++..+|+|+.||
T Consensus 105 l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~--l~~L~~L--~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 105 IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAA--LDKLEDL--LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp CCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTT--TTTCSEE--EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCcCCccccCCCCCEEECCCCcCCchhHHHHHhc--CCCCCEE--EecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 3445566788899999999999998887777765 8999999 6999999765 779999999999999999
Q ss_pred CcccCHHHHHHHH
Q psy4164 103 SVFILPSEKQETN 115 (147)
Q Consensus 103 ~~~Vt~~eR~~A~ 115 (147)
+.+|+++||..|+
T Consensus 181 ~~~i~~~e~~~a~ 193 (198)
T 1ds9_A 181 GMPVDVDEREQAN 193 (198)
T ss_dssp CGGGTTTTTTHHH
T ss_pred CcccCHHHHHHHH
Confidence 9999999999984
No 4
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.72 E-value=2.5e-09 Score=77.67 Aligned_cols=71 Identities=25% Similarity=0.410 Sum_probs=61.6
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCcccCHHHH
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEK 111 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~~Vt~~eR 111 (147)
..+++|+.|+|++|+|+++..+..+.. +++|+.| .+.+|+++..+.|+..++..+|+|++||.......++
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~--l~~L~~L--~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKK--LECLKSL--DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSS--CSCCCEE--ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhc--CCCCCEE--EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 358999999999999999877666765 8999999 6999999999999999999999999999987765443
No 5
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.61 E-value=5.8e-08 Score=68.99 Aligned_cols=64 Identities=27% Similarity=0.488 Sum_probs=55.8
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCc
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSV 104 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~ 104 (147)
..+++|+.|++++|+|+++.....+.. +|+|++| .+.+|+++..+.|+..++..+|+|+.||..
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~--l~~L~~L--~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLSTIEPLKK--LENLKSL--DLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHHHHGGGGG--CTTCCEE--ECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhCCCCCEEECCCCcCCChHHHHHHhh--CCCCCEE--eCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 358899999999999988766566665 8999999 699999999999999999999999999975
No 6
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.14 E-value=1.7e-06 Score=75.16 Aligned_cols=66 Identities=24% Similarity=0.349 Sum_probs=54.1
Q ss_pred hhhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 33 VFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 33 i~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
+..+..+++|+.|+|++|+|+.+.....+.. +++|+.| .+.+|+++..+.++..++..+|+|+.||
T Consensus 501 lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~--l~~L~~L--~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLVS--CPRLVLL--NLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CGGGTTCSSCCEEECCSSCCCSSSTTGGGGG--CTTCCEE--ECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CcccCCCCCCcEEECCCCCCCCCCCcHHHhc--CCCCCEE--EecCCcCCCCccHHHHHHHHCcccCccC
Confidence 4456778888888888888888742334554 8999999 6999999998888889999999999987
No 7
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.90 E-value=2.7e-07 Score=72.26 Aligned_cols=73 Identities=16% Similarity=0.127 Sum_probs=45.5
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCcccCHHHHHHH
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQET 114 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~~Vt~~eR~~A 114 (147)
.+..+++|+.|+|++|+|+++ ..+.. +++|+.| .+.+|+++..+.+....+...+.|+.+||..|+++++..+
T Consensus 145 ~l~~l~~L~~L~L~~N~i~~~---~~l~~--l~~L~~L--~l~~N~~~~~~~~~~~~l~~~~~l~~l~~~~i~~~~i~~~ 217 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNEITNT---GGLTR--LKKVNWI--DLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNG 217 (263)
T ss_dssp GGGGCTTCCEEECTTSCCCBC---TTSTT--CCCCCEE--EEEEEEEECCCEECCSEEEEECCCBCTTSCBCCCSEEGGG
T ss_pred HHccCCCCCEEECCCCcCcch---HHhcc--CCCCCEE--eCCCCcccCCccccccceEECCeeecCCCCCcCCCEecCC
Confidence 344555555555555555554 22332 6788888 5888888766533323333468899999999987665543
No 8
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.78 E-value=5.8e-06 Score=63.09 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=47.0
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccC----cccHHHHHHHHCCCCccccCcccCHHHHH
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEK----IREYRAVVSTMIPQLVTLDSVFILPSEKQ 112 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~----~~~YR~~vi~~lp~L~~LD~~~Vt~~eR~ 112 (147)
..+++|+.|+|++|+|+.+.. ..+.. +++|+.| .+.|||+.- ...+|.++....+.+..+||..|...++.
T Consensus 132 ~~l~~L~~L~L~~N~l~~~~~-~~~~~--l~~L~~L--~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~ 206 (229)
T 3e6j_A 132 ERLTHLTHLALDQNQLKSIPH-GAFDR--LSSLTHA--YLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSA 206 (229)
T ss_dssp GGCTTCSEEECCSSCCCCCCT-TTTTT--CTTCCEE--ECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECTTCS
T ss_pred ccCCCCCEEECCCCcCCccCH-HHHhC--CCCCCEE--EeeCCCccCCcchhHHHHHHHHhCccccccccCcccCCCCcC
Confidence 345555555555555554433 22332 6788888 689999853 33478888888889999999888755543
No 9
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.76 E-value=3.1e-06 Score=66.98 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=53.2
Q ss_pred hhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCcccCHHHHHH
Q psy4164 34 FVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQE 113 (147)
Q Consensus 34 ~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~~Vt~~eR~~ 113 (147)
..+..+++|+.|+|++|+|+++.. +.. +++|+.| .+.+|++...+.++...+..+++++.+||..|+++.+..
T Consensus 172 ~~l~~l~~L~~L~L~~N~i~~l~~---l~~--l~~L~~L--~l~~n~i~~~~~~~~~~l~~~~~l~~l~~~~i~~~~~~~ 244 (291)
T 1h6t_A 172 VPLAGLTKLQNLYLSKNHISDLRA---LAG--LKNLDVL--ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 244 (291)
T ss_dssp GGGTTCTTCCEEECCSSCCCBCGG---GTT--CTTCSEE--EEEEEEEECCCEECCSEEEEECCCBCTTSCBCCEEEEGG
T ss_pred hhhcCCCccCEEECCCCcCCCChh---hcc--CCCCCEE--ECcCCcccCCccccccccEEcceEECCCCCCcCCCeecc
Confidence 345666777777777777776543 433 7888888 588999888776665666677899999999998765544
No 10
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.59 E-value=5.7e-05 Score=55.92 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=35.9
Q ss_pred hhhccccccEEEeeCCC-ccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 35 VLRRVNSLRTLSLYGNP-IEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~-I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
.+..+++|+.|+|++|+ |+++.. +.. +++|+.| .+.+|++.... .+..+|+|+.||-
T Consensus 131 ~l~~l~~L~~L~L~~n~~i~~~~~---l~~--l~~L~~L--~l~~n~i~~~~-----~l~~l~~L~~L~l 188 (197)
T 4ezg_A 131 KINTLPKVNSIDLSYNGAITDIMP---LKT--LPELKSL--NIQFDGVHDYR-----GIEDFPKLNQLYA 188 (197)
T ss_dssp HHTTCSSCCEEECCSCTBCCCCGG---GGG--CSSCCEE--ECTTBCCCCCT-----TGGGCSSCCEEEE
T ss_pred HHhhCCCCCEEEccCCCCccccHh---hcC--CCCCCEE--ECCCCCCcChH-----HhccCCCCCEEEe
Confidence 35566777777777776 666542 333 6777777 57777776543 4566777776653
No 11
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.49 E-value=0.0001 Score=58.13 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=7.1
Q ss_pred CccccccccccccCcccC
Q psy4164 66 IPQLVTLDSVLYGNPIEK 83 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~~ 83 (147)
+++|+.| .+.+|.+..
T Consensus 155 l~~L~~L--~L~~N~l~~ 170 (291)
T 1h6t_A 155 LTKLDTL--SLEDNQISD 170 (291)
T ss_dssp CTTCSEE--ECCSSCCCC
T ss_pred CCCCCEE--EccCCcccc
Confidence 3444444 344444443
No 12
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.47 E-value=5.9e-05 Score=58.76 Aligned_cols=59 Identities=24% Similarity=0.210 Sum_probs=42.5
Q ss_pred hhhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 33 VFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 33 i~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+..+++|+.|+|++|+|+++. .+.. +++|+.| .+.+|++... ..+..+++|+.||-
T Consensus 121 ~~~l~~l~~L~~L~Ls~N~i~~~~---~l~~--l~~L~~L--~L~~N~i~~~-----~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 121 TDSLIHLKNLEILSIRNNKLKSIV---MLGF--LSKLEVL--DLHGNEITNT-----GGLTRLKKVNWIDL 179 (263)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCG---GGGG--CTTCCEE--ECTTSCCCBC-----TTSTTCCCCCEEEE
T ss_pred ChhhcCcccccEEECCCCcCCCCh---HHcc--CCCCCEE--ECCCCcCcch-----HHhccCCCCCEEeC
Confidence 445667788888888888888764 3443 7888888 5888888765 24567888887763
No 13
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.41 E-value=1.8e-05 Score=69.38 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=48.7
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCcccCHHH
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE 110 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~~Vt~~e 110 (147)
.+..+++|+.|+|++|+|+++.. +.. |++|+.| .+.+|++...+.++...+..++.|+.+||..++++.
T Consensus 170 ~l~~l~~L~~L~Ls~N~i~~l~~---l~~--l~~L~~L--~L~~N~l~~~p~~~~~~l~~~~~l~~l~g~~~~~~~ 238 (605)
T 1m9s_A 170 PLAGLTKLQNLYLSKNHISDLRA---LAG--LKNLDVL--ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238 (605)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGG---GTT--CTTCSEE--ECCSEEEECCCCCCCSSCEEECCCBCSSSCBCCCSE
T ss_pred hhccCCCCCEEECcCCCCCCChH---Hcc--CCCCCEE--EccCCcCcCCcccccccEEecccccccCCCCcCchh
Confidence 45666777777777777766533 433 7888888 588888887766655556667788888888887654
No 14
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.41 E-value=0.00016 Score=57.36 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=9.1
Q ss_pred hhccccccEEEeeCCCccch
Q psy4164 36 LRRVNSLRTLSLYGNPIEKI 55 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~ 55 (147)
+..+++|+.|+|++|+|+++
T Consensus 147 l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCC
T ss_pred ccCCCCccEEEccCCcCCCC
Confidence 33444444444444444443
No 15
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.36 E-value=0.00012 Score=52.54 Aligned_cols=62 Identities=26% Similarity=0.256 Sum_probs=38.9
Q ss_pred hhhhccccccEEEeeCCCccch-hhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 34 FVLRRVNSLRTLSLYGNPIEKI-REYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 34 ~~L~~l~~L~~L~L~~N~I~~~-~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
..+..+++|+.|+|++|+|+.. ..+ +.. +++|++| .+.+|.+...+.. ..+..+|+|+.||-
T Consensus 65 ~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~--l~~L~~L--~Ls~N~l~~~~~~--~~l~~l~~L~~L~l 127 (168)
T 2ell_A 65 SNLPKLPKLKKLELSENRIFGGLDML--AEK--LPNLTHL--NLSGNKLKDISTL--EPLKKLECLKSLDL 127 (168)
T ss_dssp SSCCCCSSCCEEEEESCCCCSCCCHH--HHH--CTTCCEE--ECBSSSCCSSGGG--GGGSSCSCCCEEEC
T ss_pred hhhccCCCCCEEECcCCcCchHHHHH--Hhh--CCCCCEE--eccCCccCcchhH--HHHhcCCCCCEEEe
Confidence 3455677777777777777763 221 222 6778888 5778877664321 24556778877764
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.36 E-value=0.00024 Score=56.21 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=13.7
Q ss_pred hhhhccccccEEEeeCCCccchh
Q psy4164 34 FVLRRVNSLRTLSLYGNPIEKIR 56 (147)
Q Consensus 34 ~~L~~l~~L~~L~L~~N~I~~~~ 56 (147)
..+..+++|+.|++++|+|+++.
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~~ 281 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDIS 281 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCCG
T ss_pred hhHhcCCCcCEEEccCCccCCCh
Confidence 34555666666666666666653
No 17
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.35 E-value=0.00018 Score=57.05 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=12.1
Q ss_pred hhhccccccEEEeeCCCccchhh
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIRE 57 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~ 57 (147)
.+..+++|+.|+|++|+|+.+..
T Consensus 124 ~l~~l~~L~~L~l~~n~l~~~~~ 146 (308)
T 1h6u_A 124 PLAGLSNLQVLYLDLNQITNISP 146 (308)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGG
T ss_pred hhcCCCCCCEEECCCCccCcCcc
Confidence 34455555555555555555443
No 18
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.33 E-value=0.00012 Score=51.46 Aligned_cols=62 Identities=26% Similarity=0.341 Sum_probs=37.3
Q ss_pred hhhhccccccEEEeeCCCccc-hhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 34 FVLRRVNSLRTLSLYGNPIEK-IREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 34 ~~L~~l~~L~~L~L~~N~I~~-~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
..+..+++|+.|+|++|+|+. +... +.. +++|+.| .+.+|.+...+. ...+..+|+|+.||-
T Consensus 58 ~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~--l~~L~~L--~ls~N~i~~~~~--~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 58 ANLPKLNKLKKLELSDNRVSGGLEVL--AEK--CPNLTHL--NLSGNKIKDLST--IEPLKKLENLKSLDL 120 (149)
T ss_dssp TTCCCCTTCCEEECCSSCCCSCTHHH--HHH--CTTCCEE--ECTTSCCCSHHH--HGGGGGCTTCCEEEC
T ss_pred hhhhcCCCCCEEECCCCcccchHHHH--hhh--CCCCCEE--ECCCCcCCChHH--HHHHhhCCCCCEEeC
Confidence 345566777777777777766 3221 222 6777777 577777765321 124566777777764
No 19
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.33 E-value=0.00016 Score=53.08 Aligned_cols=40 Identities=28% Similarity=0.487 Sum_probs=18.2
Q ss_pred ccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCccc
Q psy4164 38 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIE 82 (147)
Q Consensus 38 ~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~ 82 (147)
.+++|+.|+|++|+|+.+.. ..+.. +++|+.| .+.+||+.
T Consensus 79 ~l~~L~~L~L~~N~l~~l~~-~~~~~--l~~L~~L--~L~~N~~~ 118 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIPR-GAFDN--LKSLTHI--YLYNNPWD 118 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCT-TTTTT--CTTCSEE--ECCSSCBC
T ss_pred CcchhhEEECCCCccceeCH-HHhcc--ccCCCEE--EeCCCCcc
Confidence 34444444444444444322 11222 4555555 45566554
No 20
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.30 E-value=0.0001 Score=53.60 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=46.3
Q ss_pred hhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 34 FVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 34 ~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
..+..+++|+.|+|++|+|+.+.. ..+.. +|+|++| .+.+|.+...+.. ..+..+|+|+.||-
T Consensus 58 ~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~--l~~L~~L--~L~~N~i~~~~~~--~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 58 DGFPLLRRLKTLLVNNNRICRIGE-GLDQA--LPDLTEL--ILTNNSLVELGDL--DPLASLKSLTYLCI 120 (176)
T ss_dssp CCCCCCSSCCEEECCSSCCCEECS-CHHHH--CTTCCEE--ECCSCCCCCGGGG--GGGGGCTTCCEEEC
T ss_pred cccccCCCCCEEECCCCcccccCc-chhhc--CCCCCEE--ECCCCcCCcchhh--HhhhcCCCCCEEEe
Confidence 456778889999999999887642 11344 8999999 6999999765531 24668999998864
No 21
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.29 E-value=0.00019 Score=62.89 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=9.7
Q ss_pred hhccccccEEEeeCCCccch
Q psy4164 36 LRRVNSLRTLSLYGNPIEKI 55 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~ 55 (147)
+..|++|+.|+|++|+|+.+
T Consensus 127 l~~l~~L~~L~Ls~N~l~~l 146 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKITDI 146 (605)
T ss_dssp GGGCTTCSEEECCSSCCCCC
T ss_pred ccCCCccCEEECCCCccCCc
Confidence 44444555555555544444
No 22
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.28 E-value=0.00019 Score=53.05 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=5.8
Q ss_pred ccccccEEEeeCCCc
Q psy4164 38 RVNSLRTLSLYGNPI 52 (147)
Q Consensus 38 ~l~~L~~L~L~~N~I 52 (147)
.+++|+.|++++|+|
T Consensus 86 ~l~~L~~L~l~~n~l 100 (197)
T 4ezg_A 86 GLSNLERLRIMGKDV 100 (197)
T ss_dssp TCTTCCEEEEECTTC
T ss_pred cCCCCCEEEeECCcc
Confidence 333333333333333
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.20 E-value=0.0003 Score=55.66 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=27.6
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
+..+++|++|++++|+|++++. +.. +++|++| .+.+|.+...+. +..+++|+.||
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~~---~~~--l~~L~~L--~l~~n~i~~~~~-----~~~l~~L~~L~ 138 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDISA---LQN--LTNLREL--YLNEDNISDISP-----LANLTKMYSLN 138 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG---GTT--CTTCSEE--ECTTSCCCCCGG-----GTTCTTCCEEE
T ss_pred hhcCCcCCEEEccCCcccCchH---HcC--CCcCCEE--ECcCCcccCchh-----hccCCceeEEE
Confidence 4555566666666665555432 222 4555555 355555544332 33444444444
No 24
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.14 E-value=0.00017 Score=52.47 Aligned_cols=59 Identities=20% Similarity=0.248 Sum_probs=35.5
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
+..+++|+.|+|++|+|+.+.. ..+.. +++|+.| .+.+|.+...+. .++..+++|+.||
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~l~~-~~f~~--l~~L~~L--~L~~N~l~~~~~---~~~~~l~~L~~L~ 108 (170)
T 3g39_A 50 FDRLTQLTRLDLDNNQLTVLPA-GVFDK--LTQLTQL--SLNDNQLKSIPR---GAFDNLKSLTHIW 108 (170)
T ss_dssp TTTCTTCSEEECCSSCCCCCCT-TTTTT--CTTCCEE--ECCSSCCCCCCT---TTTTTCTTCCEEE
T ss_pred hcCcccCCEEECCCCCcCccCh-hhccC--CCCCCEE--ECCCCccCEeCH---HHhcCCCCCCEEE
Confidence 4567777777777777776543 11222 6677777 467776665432 2345566666654
No 25
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.14 E-value=0.00038 Score=60.38 Aligned_cols=58 Identities=26% Similarity=0.421 Sum_probs=39.7
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCc--ccHHHHHHHHCCCCccccC
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI--REYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~--~~YR~~vi~~lp~L~~LD~ 103 (147)
.+..+++|+.|+|++|+|+.++ .+.. +++|+.| .+.+|.+... +. .+..+++|+.||-
T Consensus 481 ~~~~l~~L~~L~Ls~N~l~~lp---~l~~--l~~L~~L--~Ls~N~l~~~~~p~----~l~~l~~L~~L~L 540 (567)
T 1dce_A 481 ALAALRCLEVLQASDNALENVD---GVAN--LPRLQEL--LLCNNRLQQSAAIQ----PLVSCPRLVLLNL 540 (567)
T ss_dssp GGGGCTTCCEEECCSSCCCCCG---GGTT--CSSCCEE--ECCSSCCCSSSTTG----GGGGCTTCCEEEC
T ss_pred hhhcCCCCCEEECCCCCCCCCc---ccCC--CCCCcEE--ECCCCCCCCCCCcH----HHhcCCCCCEEEe
Confidence 4556777777777777777654 3433 6778888 5788877765 33 4667888888764
No 26
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.09 E-value=0.00023 Score=52.90 Aligned_cols=60 Identities=27% Similarity=0.239 Sum_probs=32.0
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|+|+.+.. ..+.. +++|+.| .+.+|.+...+. ..+..+++|+.||-
T Consensus 74 f~~l~~L~~L~Ls~N~l~~i~~-~~f~~--l~~L~~L--~L~~N~l~~~~~---~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 74 FSNMTQLLTLILSYNRLRCIPP-RTFDG--LKSLRLL--SLHGNDISVVPE---GAFNDLSALSHLAI 133 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCT-TTTTT--CTTCCEE--ECCSSCCCBCCT---TTTTTCTTCCEEEC
T ss_pred ccCCCCCCEEECCCCccCEeCH-HHhCC--CCCCCEE--ECCCCCCCeeCh---hhhhcCccccEEEe
Confidence 4455666666666666655432 11222 5666666 466666654432 23445666666643
No 27
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.08 E-value=0.00022 Score=52.32 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=47.2
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
.+..+++|+.|+|++|+|+.+..- .+.. +++|+.| .+.+|.+...+. ..+..+++|+.||-
T Consensus 52 ~~~~l~~L~~L~Ls~N~l~~i~~~-~~~~--l~~L~~L--~L~~N~l~~l~~---~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 52 VFDHLVNLQQLYFNSNKLTAIPTG-VFDK--LTQLTQL--DLNDNHLKSIPR---GAFDNLKSLTHIYL 112 (174)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTT-TTTT--CTTCCEE--ECCSSCCCCCCT---TTTTTCTTCSEEEC
T ss_pred HhcCCcCCCEEECCCCCCCccChh-HhCC--cchhhEE--ECCCCccceeCH---HHhccccCCCEEEe
Confidence 367899999999999999987541 2333 7999999 699999987653 34667899998764
No 28
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.05 E-value=0.00031 Score=54.45 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=13.5
Q ss_pred hhhhccccccEEEeeCCCccchh
Q psy4164 34 FVLRRVNSLRTLSLYGNPIEKIR 56 (147)
Q Consensus 34 ~~L~~l~~L~~L~L~~N~I~~~~ 56 (147)
..+..+++|+.|+|++|+|+.+.
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~~~ 79 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHDIS 79 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCG
T ss_pred cccccCCCCcEEECCCCCCCCch
Confidence 34555666666666666665543
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.01 E-value=0.0002 Score=60.34 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=13.5
Q ss_pred hhccccccEEEeeCCCccchh
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIR 56 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~ 56 (147)
+..+++|++|+|++|+|+.++
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~ 92 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIE 92 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEEC
T ss_pred HhCCCCCCEEECCCCcCCCcC
Confidence 455666777777777666553
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=96.94 E-value=0.0007 Score=56.24 Aligned_cols=55 Identities=24% Similarity=0.407 Sum_probs=24.4
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
+..+++|++|++++|.|..+.. +.. +++|++| .+.+|.+...+. +..+++|+.||
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~---~~~--l~~L~~L--~L~~n~l~~~~~-----~~~l~~L~~L~ 140 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP---LAN--LTNLTGL--TLFNNQITDIDP-----LKNLTNLNRLE 140 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG---GTT--CTTCCEE--ECCSSCCCCCGG-----GTTCTTCSEEE
T ss_pred hhccccCCEEECCCCccccChh---hcC--CCCCCEE--ECCCCCCCCChH-----HcCCCCCCEEE
Confidence 3344444444444444444332 222 4555555 355555444332 34455555544
No 31
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=96.92 E-value=0.00094 Score=52.54 Aligned_cols=66 Identities=24% Similarity=0.225 Sum_probs=34.4
Q ss_pred hhccccccEEEeeCCCccchhhhhh-hhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRA-VVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~-L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|++.....+.. .....+|+|++| .+.+|.+...+..-..++..+++|+.||-
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L--~Ls~N~l~~l~~~~~~l~~~l~~L~~L~L 231 (310)
T 4glp_A 165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL--ALRNTGMETPTGVCAALAAAGVQPHSLDL 231 (310)
T ss_dssp CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC--BCCSSCCCCHHHHHHHHHHHTCCCSSEEC
T ss_pred hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE--ECCCCCCCchHHHHHHHHhcCCCCCEEEC
Confidence 3456666666666666554333211 100125666777 46666665433322234556677776664
No 32
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.88 E-value=0.00064 Score=51.35 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=18.9
Q ss_pred CccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 66 IPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
+++|+.| .+.+|.+..... ..+..+++|+.||
T Consensus 127 l~~L~~L--~L~~N~l~~~~~---~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 127 LHNLNLL--SLYDNKLQTIAK---GTFSPLRAIQTMH 158 (220)
T ss_dssp CTTCCEE--ECCSSCCSCCCT---TTTTTCTTCCEEE
T ss_pred CCCCCEE--ECCCCcCCEECH---HHHhCCCCCCEEE
Confidence 4666666 466776665432 2345567777665
No 33
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=96.87 E-value=0.00054 Score=53.05 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=12.0
Q ss_pred hhhccccccEEEeeCCCccch
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKI 55 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~ 55 (147)
.+..+++|+.|+|++|.|+.+
T Consensus 80 ~l~~l~~L~~L~L~~n~l~~~ 100 (272)
T 3rfs_A 80 ALKELTNLTYLILTGNQLQSL 100 (272)
T ss_dssp GGTTCTTCCEEECTTSCCCCC
T ss_pred hhcCCCCCCEEECCCCccCcc
Confidence 445556666666666665543
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=96.87 E-value=0.00071 Score=56.20 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=51.3
Q ss_pred cchhhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCc
Q psy4164 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSV 104 (147)
Q Consensus 31 ~~i~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~ 104 (147)
..+..+..+++|+.|+|++|.|+++.. +.. +++|++| .+.+|.+..... +..+++|+.||-.
T Consensus 59 ~~l~~~~~l~~L~~L~Ls~n~l~~~~~---~~~--l~~L~~L--~l~~n~l~~~~~-----~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 59 KSIDGVEYLNNLTQINFSNNQLTDITP---LKN--LTKLVDI--LMNNNQIADITP-----LANLTNLTGLTLF 120 (466)
T ss_dssp CCCTTGGGCTTCCEEECCSSCCCCCGG---GTT--CTTCCEE--ECCSSCCCCCGG-----GTTCTTCCEEECC
T ss_pred ccCcchhhhcCCCEEECCCCccCCchh---hhc--cccCCEE--ECCCCccccChh-----hcCCCCCCEEECC
Confidence 345567889999999999999999865 544 8999999 699999887654 7789999999864
No 35
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.85 E-value=0.00021 Score=57.84 Aligned_cols=61 Identities=25% Similarity=0.249 Sum_probs=36.8
Q ss_pred cccccEEEeeCCCccch--hhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccc
Q psy4164 39 VNSLRTLSLYGNPIEKI--REYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTL 101 (147)
Q Consensus 39 l~~L~~L~L~~N~I~~~--~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~L 101 (147)
+++|+.|+|++|+|++. ..+.......+|+|++| .+.+|++.....|...+...+|+++.+
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L--~l~~N~l~~~~~~~~~l~~~l~~~~~~ 335 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL--ELNGNRFSEEDDVVDEIREVFSTRGRG 335 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE--ECTTSBSCTTSHHHHHHHHHHHHHTCC
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE--EccCCcCCcchhHHHHHHHHhhhcCcc
Confidence 66677777777776662 11211110126777777 577888877776667777777765543
No 36
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.83 E-value=0.0007 Score=53.95 Aligned_cols=63 Identities=25% Similarity=0.331 Sum_probs=47.6
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCC--CCcccc--CcccC
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIP--QLVTLD--SVFIL 107 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp--~L~~LD--~~~Vt 107 (147)
..|++|+.|+|++|+|+.++.+..+.. .+|+|+.| .|.+|-+..... +..+. +|+.|+ +-+++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~-~l~~L~~L--~Ls~N~i~~~~~-----l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQ-KAPNLKIL--NLSGNELKSERE-----LDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHH-HSTTCCEE--ECTTSCCCSGGG-----GGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHh-hCCCCCEE--ECCCCccCCchh-----hhhcccCCcceEEccCCcCc
Confidence 468999999999999999988865432 39999999 699999987543 22333 777665 55665
No 37
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=96.82 E-value=0.0015 Score=51.44 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=15.2
Q ss_pred CccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 66 IPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
+++|++| .+.+|.+...+..-..+...+++|+.||
T Consensus 200 l~~L~~L--~L~~N~l~~~~~~~~~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 200 FPTLQVL--ALRNAGMETPSGVCSALAAARVQLQGLD 234 (312)
T ss_dssp CTTCCEE--ECTTSCCCCHHHHHHHHHHTTCCCSEEE
T ss_pred CCCCCEE--ECCCCcCcchHHHHHHHHhcCCCCCEEE
Confidence 4445555 3455544432222223334445555544
No 38
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.81 E-value=0.0006 Score=50.62 Aligned_cols=61 Identities=23% Similarity=0.249 Sum_probs=46.6
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
.+..+++|+.|+|++|+|+.+.. ..+.. +++|+.| .+.+|.+..... ..+..+++|+.||-
T Consensus 49 ~~~~l~~L~~L~Ls~N~i~~i~~-~~f~~--l~~L~~L--~Ls~N~l~~i~~---~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 49 ELSNYKHLTLIDLSNNRISTLSN-QSFSN--MTQLLTL--ILSYNRLRCIPP---RTFDGLKSLRLLSL 109 (193)
T ss_dssp GGGGCTTCCEEECCSSCCCCCCT-TTTTT--CTTCCEE--ECCSSCCCBCCT---TTTTTCTTCCEEEC
T ss_pred HhhcccCCCEEECCCCcCCEeCH-hHccC--CCCCCEE--ECCCCccCEeCH---HHhCCCCCCCEEEC
Confidence 56788999999999999998754 22443 7899999 699999887543 24567888888864
No 39
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=96.78 E-value=0.00088 Score=50.79 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=42.1
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|+|+.+.. .+.. +++|+.| .+.+|.+...+. ..+..+++|+.|+-
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~lp~--~~~~--l~~L~~L--~L~~N~l~~~~~---~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTELPR--GIER--LTHLTHL--ALDQNQLKSIPH---GAFDRLSSLTHAYL 166 (229)
T ss_dssp TTTCTTCCEEECCSSCCCSCCT--TGGG--CTTCSEE--ECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred hCcchhhCeEeccCCcccccCc--cccc--CCCCCEE--ECCCCcCCccCH---HHHhCCCCCCEEEe
Confidence 4567788888888888876532 2333 7889999 688998886553 35667888888764
No 40
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.77 E-value=0.00041 Score=51.25 Aligned_cols=60 Identities=25% Similarity=0.337 Sum_probs=34.0
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|+|+.+.. ..+.. +++|++| .+.+|.+..... ..+..+++|+.||-
T Consensus 74 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~~--l~~L~~L--~L~~N~l~~~~~---~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 74 FEGASHIQELQLGENKIKEISN-KMFLG--LHQLKTL--NLYDNQISCVMP---GSFEHLNSLTSLNL 133 (192)
T ss_dssp TTTCTTCCEEECCSCCCCEECS-SSSTT--CTTCCEE--ECCSSCCCEECT---TSSTTCTTCCEEEC
T ss_pred cCCcccCCEEECCCCcCCccCH-HHhcC--CCCCCEE--ECCCCcCCeeCH---HHhhcCCCCCEEEe
Confidence 3345555555555555554432 11222 5777788 588887765421 24566788887754
No 41
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.75 E-value=0.00042 Score=51.19 Aligned_cols=43 Identities=28% Similarity=0.420 Sum_probs=26.2
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEK 83 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~ 83 (147)
+..+++|+.|+|++|+|+.+.. ..+.. +++|++| .+.+||+.-
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~~~-~~~~~--l~~L~~L--~L~~N~l~c 140 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCVMP-GSFEH--LNSLTSL--NLASNPFNC 140 (192)
T ss_dssp STTCTTCCEEECCSSCCCEECT-TSSTT--CTTCCEE--ECTTCCBCC
T ss_pred hcCCCCCCEEECCCCcCCeeCH-HHhhc--CCCCCEE--EeCCCCccC
Confidence 4566777777777777766422 12322 5677777 477777653
No 42
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.72 E-value=0.00018 Score=53.18 Aligned_cols=60 Identities=27% Similarity=0.203 Sum_probs=35.6
Q ss_pred hhhhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 33 VFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 33 i~~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+..+++|+.|+|++|+|+++... +.. +|+|+.| .+.+|.+...+ -+..+++|+.||-
T Consensus 63 l~~~~~l~~L~~L~l~~n~l~~l~~~--~~~--~~~L~~L--~L~~N~l~~l~-----~~~~l~~L~~L~l 122 (198)
T 1ds9_A 63 ISSLSGMENLRILSLGRNLIKKIENL--DAV--ADTLEEL--WISYNQIASLS-----GIEKLVNLRVLYM 122 (198)
T ss_dssp CCCHHHHTTCCEEEEEEEEECSCSSH--HHH--HHHCSEE--EEEEEECCCHH-----HHHHHHHSSEEEE
T ss_pred ccccccCCCCCEEECCCCCcccccch--hhc--CCcCCEE--ECcCCcCCcCC-----ccccCCCCCEEEC
Confidence 33455666666666666666655432 222 4677777 47777766533 2556677777653
No 43
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.71 E-value=0.00092 Score=48.54 Aligned_cols=44 Identities=25% Similarity=0.378 Sum_probs=35.6
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCc
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~ 84 (147)
+..+++|+.|+|++|+|+.+.. ..+.. +++|+.| .+.+||+.-.
T Consensus 74 f~~l~~L~~L~L~~N~l~~~~~-~~~~~--l~~L~~L--~L~~N~~~c~ 117 (170)
T 3g39_A 74 FDKLTQLTQLSLNDNQLKSIPR-GAFDN--LKSLTHI--WLLNNPWDCA 117 (170)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT-TTTTT--CTTCCEE--ECCSSCBCTT
T ss_pred ccCCCCCCEEECCCCccCEeCH-HHhcC--CCCCCEE--EeCCCCCCCC
Confidence 5689999999999999998754 12443 7999999 6999999644
No 44
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=96.68 E-value=0.00096 Score=50.91 Aligned_cols=60 Identities=23% Similarity=0.306 Sum_probs=37.7
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|+|+.+.. ..+.. +++|+.| .+.+|.+...+. ..+..+++|+.||-
T Consensus 127 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~~--l~~L~~L--~L~~N~l~~~~~---~~~~~l~~L~~L~l 186 (251)
T 3m19_A 127 FDRLTKLKELRLNTNQLQSIPA-GAFDK--LTNLQTL--SLSTNQLQSVPH---GAFDRLGKLQTITL 186 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT-TTTTT--CTTCCEE--ECCSSCCSCCCT---TTTTTCTTCCEEEC
T ss_pred hccCCcccEEECcCCcCCccCH-HHcCc--CcCCCEE--ECCCCcCCccCH---HHHhCCCCCCEEEe
Confidence 4567777777777777776543 12333 6777777 577777765442 24456677777653
No 45
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.65 E-value=0.0012 Score=49.74 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=18.0
Q ss_pred CccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 66 IPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
+++|+.| .+.+|.+..... ..+..+++|+.||
T Consensus 128 l~~L~~L--~L~~N~l~~~~~---~~~~~l~~L~~L~ 159 (220)
T 2v70_A 128 LSSVRLL--SLYDNQITTVAP---GAFDTLHSLSTLN 159 (220)
T ss_dssp CTTCSEE--ECTTSCCCCBCT---TTTTTCTTCCEEE
T ss_pred CccCCEE--ECCCCcCCEECH---HHhcCCCCCCEEE
Confidence 4566666 466666655421 2345567777665
No 46
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.63 E-value=0.0007 Score=51.12 Aligned_cols=60 Identities=27% Similarity=0.323 Sum_probs=33.4
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|+|+.+..- .+.. +++|+.| .+.+|.+..... ..+..+++|+.||-
T Consensus 76 ~~~l~~L~~L~Ls~N~l~~l~~~-~f~~--l~~L~~L--~L~~N~l~~~~~---~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKITELPKS-LFEG--LFSLQLL--LLNANKINCLRV---DAFQDLHNLNLLSL 135 (220)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTT-TTTT--CTTCCEE--ECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred hhCCcCCCEEECCCCcCCccCHh-HccC--CCCCCEE--ECCCCCCCEeCH---HHcCCCCCCCEEEC
Confidence 44555666666666666544321 1222 5667777 577777665432 24556777777764
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.63 E-value=0.00079 Score=56.70 Aligned_cols=20 Identities=40% Similarity=0.684 Sum_probs=12.6
Q ss_pred hhccccccEEEeeCCCccch
Q psy4164 36 LRRVNSLRTLSLYGNPIEKI 55 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~ 55 (147)
+..+++|++|+|++|+|+.+
T Consensus 96 f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 96 YQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEE
T ss_pred hcCCCCCCEEEccCCcCCCC
Confidence 45566666666666666654
No 48
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.62 E-value=0.00085 Score=48.44 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=36.1
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|+|+.+..- .+.. +++|++| .+.+|.+...+. .++..+++|+.||-
T Consensus 72 ~~~l~~L~~L~l~~N~l~~~~~~-~~~~--l~~L~~L--~l~~N~l~~~~~---~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQSLPNG-VFDK--LTQLKEL--ALDTNQLKSVPD---GIFDRLTSLQKIWL 131 (177)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTT-TTTT--CTTCCEE--ECCSSCCSCCCT---TTTTTCTTCCEEEC
T ss_pred ccCCCccCEEECCCCCccccCHH-HhhC--CcccCEE--ECcCCcceEeCH---HHhcCCcccCEEEe
Confidence 34566666666666666654321 1222 5777777 577787765443 34456788887654
No 49
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.61 E-value=0.00091 Score=50.46 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=32.8
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|+|+.+.. ..+.. +++|++| .+.+|.+..... ..+..+++|+.||-
T Consensus 77 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~~--l~~L~~L--~Ls~N~l~~~~~---~~~~~l~~L~~L~L 136 (220)
T 2v70_A 77 FEGASGVNEILLTSNRLENVQH-KMFKG--LESLKTL--MLRSNRITCVGN---DSFIGLSSVRLLSL 136 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCG-GGGTT--CSSCCEE--ECTTSCCCCBCT---TSSTTCTTCSEEEC
T ss_pred hCCCCCCCEEECCCCccCccCH-hHhcC--CcCCCEE--ECCCCcCCeECH---hHcCCCccCCEEEC
Confidence 3445555555555555554432 11222 5677777 577777765421 13446677777764
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=96.54 E-value=0.00095 Score=55.04 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=7.8
Q ss_pred CccccccccccccCcc
Q psy4164 66 IPQLVTLDSVLYGNPI 81 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv 81 (147)
+++|+.| .+.+||+
T Consensus 278 l~~L~~L--~L~~Np~ 291 (440)
T 3zyj_A 278 LHHLERI--HLHHNPW 291 (440)
T ss_dssp CTTCCEE--ECCSSCE
T ss_pred ccCCCEE--EcCCCCc
Confidence 4555555 4566665
No 51
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.53 E-value=0.0011 Score=47.91 Aligned_cols=61 Identities=23% Similarity=0.292 Sum_probs=46.4
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCc
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSV 104 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~ 104 (147)
+..+++|+.|+|++|+|+.+.. ..+.. +++|+.| .+.+|.+...+. ..+..+++|+.||-.
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~--l~~L~~L--~l~~N~l~~~~~---~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQNQIQSLPD-GVFDK--LTKLTIL--YLHENKLQSLPN---GVFDKLTQLKELALD 108 (177)
T ss_dssp TTTCTTCSEEECCSSCCCCCCT-TTTTT--CTTCCEE--ECCSSCCCCCCT---TTTTTCTTCCEEECC
T ss_pred hcCcccccEEECCCCcceEeCh-hHccC--CCccCEE--ECCCCCccccCH---HHhhCCcccCEEECc
Confidence 5788999999999999987643 12333 8999999 699999886553 245678899988753
No 52
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.50 E-value=0.0015 Score=52.71 Aligned_cols=44 Identities=30% Similarity=0.417 Sum_probs=21.6
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCc
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~ 84 (147)
+..+++|+.|+|++|+|+.+.. ..+.. +++|+.| .+.+|.+...
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~~~-~~~~~--l~~L~~L--~L~~N~l~~l 151 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVVDR-NAFED--MAQLQKL--YLSQNQISRF 151 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECT-TTTTT--CTTCCEE--ECCSSCCCSC
T ss_pred hCCCcCCCEEECCCCcccEECH-HHhCC--cccCCEE--ECCCCcCCee
Confidence 3445556666666665554421 11222 4555555 3555555543
No 53
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.50 E-value=0.0011 Score=48.93 Aligned_cols=59 Identities=20% Similarity=0.315 Sum_probs=30.3
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
..+++|+.|+|++|+|+.+.. ..+.. +++|+.| .+.+|.+..... .++..+++|+.||-
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~-~~~~~--l~~L~~L--~l~~N~l~~~~~---~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPD-GVFDK--LTQLKDL--RLYQNQLKSVPD---GVFDRLTSLQYIWL 155 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCT-TTTTT--CTTCCEE--ECCSSCCSCCCT---TTTTTCTTCCEEEC
T ss_pred cCccCCCEEEcCCCcCcccCH-hHhcc--CCcCCEE--ECCCCccceeCH---HHhccCCCccEEEe
Confidence 344455555555555544322 01222 5666666 466776665432 23455677776654
No 54
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.48 E-value=0.0015 Score=51.82 Aligned_cols=43 Identities=28% Similarity=0.328 Sum_probs=22.9
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEK 83 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~ 83 (147)
+..+++|+.|+|++|+|+.+..- .+.. +++|+.| .|.+|.+..
T Consensus 52 ~~~l~~L~~L~l~~N~l~~~~~~-~~~~--l~~L~~L--~l~~N~l~~ 94 (347)
T 2ifg_A 52 LRGLGELRNLTIVKSGLRFVAPD-AFHF--TPRLSRL--NLSFNALES 94 (347)
T ss_dssp SCSCCCCSEEECCSSCCCEECTT-GGGS--CSCCCEE--ECCSSCCSC
T ss_pred hccccCCCEEECCCCccceeCHH-HhcC--CcCCCEE--eCCCCccce
Confidence 44566666666666666654321 1222 5555555 355555544
No 55
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.46 E-value=0.0014 Score=55.05 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=15.6
Q ss_pred CccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 66 IPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+++|++| .+.+|.+...+ +..+++|+.||-
T Consensus 105 l~~L~~L--~L~~N~l~~l~------~~~l~~L~~L~l 134 (457)
T 3bz5_A 105 LTKLTYL--NCDTNKLTKLD------VSQNPLLTYLNC 134 (457)
T ss_dssp CTTCCEE--ECCSSCCSCCC------CTTCTTCCEEEC
T ss_pred CCcCCEE--ECCCCcCCeec------CCCCCcCCEEEC
Confidence 4555555 35555555432 345566665543
No 56
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=96.45 E-value=0.0011 Score=50.52 Aligned_cols=59 Identities=24% Similarity=0.259 Sum_probs=28.3
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
..+++|+.|+|++|+|+.+.. ..+.. +++|++| .+.+|.+...+. .++..+++|+.||-
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~-~~~~~--l~~L~~L--~L~~N~l~~~~~---~~~~~l~~L~~L~L 138 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPL-GVFDH--LTQLDKL--YLGGNQLKSLPS---GVFDRLTKLKELRL 138 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCT-TTTTT--CTTCCEE--ECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred ccCCcCCEEECCCCcccccCh-hHhcc--cCCCCEE--EcCCCcCCCcCh---hHhccCCcccEEEC
Confidence 344444444444444443321 11222 4566666 466666654332 23445666666654
No 57
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=96.44 E-value=0.0014 Score=53.53 Aligned_cols=61 Identities=18% Similarity=0.319 Sum_probs=39.7
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
.+..+++|+.|+|++|+|+.+.. ..+.. +++|++| .+.+|.+...+. .++..+++|+.||-
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~--l~~L~~L--~L~~N~l~~~~~---~~~~~l~~L~~L~l 402 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGD-QSFLG--LPNLKEL--ALDTNQLKSVPD---GIFDRLTSLQKIWL 402 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECT-TTTTT--CTTCCEE--ECCSSCCSCCCT---TTTTTCTTCCEEEC
T ss_pred HhcCcccCCEEECCCCcccccCh-hhccc--cccccEE--ECCCCccccCCH---hHhccCCcccEEEc
Confidence 35567788888888887766522 12333 6778888 578888776543 24567777777664
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=96.44 E-value=0.0014 Score=53.94 Aligned_cols=60 Identities=35% Similarity=0.483 Sum_probs=32.7
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|+|+.+.. ..+. .+++|++| .+.+|++...+. ..+..+++|+.||-
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~-~~~~--~l~~L~~L--~L~~N~i~~~~~---~~~~~l~~L~~L~l 167 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLTTIPN-GAFV--YLSKLKEL--WLRNNPIESIPS---YAFNRIPSLRRLDL 167 (440)
T ss_dssp GTTCSSCCEEECCSSCCSSCCT-TTSC--SCSSCCEE--ECCSCCCCEECT---TTTTTCTTCCEEEC
T ss_pred ccCCccCCEEECCCCcCCeeCH-hHhh--ccccCcee--eCCCCcccccCH---HHhhhCcccCEeCC
Confidence 4455666666666666665432 1122 25677777 577777664432 23345566666554
No 59
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=96.43 E-value=0.0017 Score=49.98 Aligned_cols=60 Identities=27% Similarity=0.427 Sum_probs=36.1
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|+|+.+.. ..+.. +++|+.| .+.+|++...+. ..+..+++|+.||-
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~--l~~L~~L--~L~~N~l~~~~~---~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPE-GAFDK--LTELKTL--KLDNNQLKRVPE---GAFDSLEKLKMLQL 212 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCT-TTTTT--CTTCCEE--ECCSSCCSCCCT---TTTTTCTTCCEEEC
T ss_pred ccCCcccceeEecCCcCcEeCh-hHhcc--CCCcCEE--ECCCCcCCcCCH---HHhccccCCCEEEe
Confidence 4566777777777777766543 11322 5677777 477777765443 23455677776654
No 60
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.42 E-value=0.0032 Score=49.33 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=34.0
Q ss_pred hhccccccEEEeeCC-CccchhhhhhhhhccCccccccccccccC-cccCcccHHHHHHHHCC-CCccccCc
Q psy4164 36 LRRVNSLRTLSLYGN-PIEKIREYRAVVSTMIPQLVTLDSVLYGN-PIEKIREYRAVVSTMIP-QLVTLDSV 104 (147)
Q Consensus 36 L~~l~~L~~L~L~~N-~I~~~~~l~~L~~~~lp~L~~Ld~~l~gN-Pv~~~~~YR~~vi~~lp-~L~~LD~~ 104 (147)
+..+++|+.|+|++| .+++..--..+.. +|+|++| .+.+| .+.... -..++..+| +|+.||-.
T Consensus 138 l~~~~~L~~L~L~~~~~l~~~~l~~~~~~--~~~L~~L--~l~~~~~l~~~~--~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSS--CSRLDEL--NLSWCFDFTEKH--VQVAVAHVSETITQLNLS 203 (336)
T ss_dssp HTTCTTCSEEECTTCBSCCHHHHHHHHHH--CTTCCEE--ECCCCTTCCHHH--HHHHHHHSCTTCCEEECC
T ss_pred HhcCCCCCEEECCCCCCCCHHHHHHHHhc--CCCCCEE--cCCCCCCcChHH--HHHHHHhcccCCCEEEeC
Confidence 455777777777777 5554211112333 6667777 46666 444321 123455666 66666543
No 61
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.42 E-value=0.0013 Score=48.49 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=33.1
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
..+++|++|+|++|+|+.+.. ..+.. +++|++| .+.+|.+..... ..+..+++|+.||-
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~--l~~L~~L--~L~~N~l~~~~~---~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPN-GVFDK--LTQLKEL--ALNTNQLQSLPD---GVFDKLTQLKDLRL 131 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCT-TTTTT--CTTCCEE--ECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred CCCCCcCEEECCCCcCCccCH-hHhcC--ccCCCEE--EcCCCcCcccCH---hHhccCCcCCEEEC
Confidence 455666666666666654432 11222 5667777 467776665432 23456677777764
No 62
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.38 E-value=0.0011 Score=53.62 Aligned_cols=60 Identities=27% Similarity=0.288 Sum_probs=38.1
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|+|+.+.. ..+.. +++|+.| .+.+|.+..... ..+..+++|+.||-
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~~--l~~L~~L--~L~~N~i~~~~~---~~~~~l~~L~~L~L 143 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNHLHTLDE-FLFSD--LQALEVL--LLYNNHIVVVDR---NAFEDMAQLQKLYL 143 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECT-TTTTT--CTTCCEE--ECCSSCCCEECT---TTTTTCTTCCEEEC
T ss_pred ccCCCCCCEEECCCCcCCcCCH-HHhCC--CcCCCEE--ECCCCcccEECH---HHhCCcccCCEEEC
Confidence 4566677777777777665533 11322 6778888 588888765432 24567788888764
No 63
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.28 E-value=0.0034 Score=50.59 Aligned_cols=66 Identities=27% Similarity=0.239 Sum_probs=35.9
Q ss_pred hhccccccEEEeeCCCccchhhh---hhhhhccCccccccccccccCcccCc--ccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREY---RAVVSTMIPQLVTLDSVLYGNPIEKI--REYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l---~~L~~~~lp~L~~Ld~~l~gNPv~~~--~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|+|++.... ..+....+++|+.| .+.+|++... ..+...+...+|+|++||-
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L--~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL--RLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEE--ECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEE--ECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 44556666666666666554221 11111125777777 5777777652 1123344456788888773
No 64
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=96.28 E-value=0.0027 Score=51.20 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=13.9
Q ss_pred CccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 66 IPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
+++|+.| .+.+|++...+ +..+++|+.||
T Consensus 317 l~~L~~L--~L~~N~i~~~~------~~~~~~L~~L~ 345 (390)
T 3o6n_A 317 FDRLENL--YLDHNSIVTLK------LSTHHTLKNLT 345 (390)
T ss_dssp HTTCSEE--ECCSSCCCCCC------CCTTCCCSEEE
T ss_pred cCcCCEE--ECCCCccceeC------chhhccCCEEE
Confidence 3455555 35555554432 33455555554
No 65
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.28 E-value=0.0013 Score=52.18 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=47.5
Q ss_pred chhhhhccccccEEEeeC-CCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 32 SVFVLRRVNSLRTLSLYG-NPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 32 ~i~~L~~l~~L~~L~L~~-N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
.+..+..+.+|+.|+|++ |+|+.+.. ..+.. +++|+.| .|.+|-+..... ..+..+++|+.||-
T Consensus 23 ~ip~l~~~~~L~~L~l~~~n~l~~~~~-~~~~~--l~~L~~L--~l~~N~l~~~~~---~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 23 SLHHLPGAENLTELYIENQQHLQHLEL-RDLRG--LGELRNL--TIVKSGLRFVAP---DAFHFTPRLSRLNL 87 (347)
T ss_dssp TTTTSCSCSCCSEEECCSCSSCCEECG-GGSCS--CCCCSEE--ECCSSCCCEECT---TGGGSCSCCCEEEC
T ss_pred ccCCCCCCCCeeEEEccCCCCCCCcCh-hHhcc--ccCCCEE--ECCCCccceeCH---HHhcCCcCCCEEeC
Confidence 344477788999999997 99998754 12433 8999999 699998876542 24567888888874
No 66
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=96.27 E-value=0.002 Score=51.48 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=17.2
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCccc
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIE 82 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~ 82 (147)
..+++|+.|+|++|+|+.+.. .+.. +++|+.| .+.+|.+.
T Consensus 203 ~~l~~L~~L~L~~N~l~~l~~--~l~~--l~~L~~L--~Ls~n~~~ 242 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPLSALGP--AIHH--LPKLEEL--DLRGCTAL 242 (328)
T ss_dssp GGCTTCCEEEEESSCCCCCCG--GGGG--CTTCCEE--ECTTCTTC
T ss_pred cCCCCCCEEEccCCCCCcCch--hhcc--CCCCCEE--ECcCCcch
Confidence 344444444444444443322 1222 4555555 34554443
No 67
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=96.27 E-value=0.0025 Score=50.82 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=37.3
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|++|+|++|.|+.+.. .+.. +++|++| .+.+|.+...+. .+..+++|+.||-
T Consensus 100 l~~l~~L~~L~L~~n~l~~lp~--~~~~--l~~L~~L--~Ls~n~l~~lp~----~l~~l~~L~~L~L 157 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLMELPD--TMQQ--FAGLETL--TLARNPLRALPA----SIASLNRLRELSI 157 (328)
T ss_dssp GGGGTTCSEEEEESSCCCCCCS--CGGG--GTTCSEE--EEESCCCCCCCG----GGGGCTTCCEEEE
T ss_pred hhhCCCCCEEECCCCCccchhH--HHhc--cCCCCEE--ECCCCccccCcH----HHhcCcCCCEEEC
Confidence 4557778888888888775542 2333 6777777 477777765443 2556677776664
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=96.26 E-value=0.0011 Score=52.34 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=35.9
Q ss_pred ccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC--cccC
Q psy4164 38 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS--VFIL 107 (147)
Q Consensus 38 ~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~--~~Vt 107 (147)
.+++|+.|+|++|+|+.+.. .+.. +++|+.| .+.+|.+...+. .+..+++|+.||- -+++
T Consensus 189 ~l~~L~~L~Ls~N~l~~l~~--~~~~--l~~L~~L--~L~~N~l~~l~~----~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAFMGP--EFQS--AAGVTWI--SLRNNKLVLIEK----ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCTTCCEEECCSSCCCEECG--GGGG--GTTCSEE--ECTTSCCCEECT----TCCCCTTCCEEECTTCCCB
T ss_pred ccccCCEEECCCCcCCcchh--hhcc--cCcccEE--ECcCCcccchhh----HhhcCCCCCEEEccCCCcc
Confidence 35566666666666655432 1333 6777888 578887775443 2456778887763 4444
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=96.23 E-value=0.0019 Score=53.41 Aligned_cols=60 Identities=33% Similarity=0.438 Sum_probs=31.2
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|+|+.+.. ..+. .+++|++| .+.+|++...+. ..+..+++|+.||-
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~-~~~~--~l~~L~~L--~L~~N~l~~~~~---~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPS-GAFE--YLSKLREL--WLRNNPIESIPS---YAFNRVPSLMRLDL 178 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCT-TTSS--SCTTCCEE--ECCSCCCCEECT---TTTTTCTTCCEEEC
T ss_pred ccCcccCCEEECCCCcCCccCh-hhhc--ccCCCCEE--ECCCCCcceeCH---hHHhcCCcccEEeC
Confidence 3445555555555555554332 1122 25677777 577777664332 23345555555554
No 70
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=96.22 E-value=0.0026 Score=53.09 Aligned_cols=59 Identities=24% Similarity=0.121 Sum_probs=34.2
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
.+..+++|++|+|++|+|+.+... . +++|++| .+.+|.+...+- ...+..+++|+.||-
T Consensus 64 ~~~~l~~L~~L~Ls~N~l~~lp~~----~--l~~L~~L--~L~~N~l~~~~~--p~~~~~l~~L~~L~L 122 (520)
T 2z7x_B 64 VFKFNQELEYLDLSHNKLVKISCH----P--TVNLKHL--DLSFNAFDALPI--CKEFGNMSQLKFLGL 122 (520)
T ss_dssp GGTTCTTCCEEECCSSCCCEEECC----C--CCCCSEE--ECCSSCCSSCCC--CGGGGGCTTCCEEEE
T ss_pred HhhcccCCCEEecCCCceeecCcc----c--cCCccEE--eccCCccccccc--hhhhccCCcceEEEe
Confidence 345666777777777776655432 2 6677777 477777654210 013456667766653
No 71
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=96.19 E-value=0.0025 Score=51.43 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=15.9
Q ss_pred CccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 66 IPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
+++|++| .+.+|.+..... ..+..+++|+.||
T Consensus 140 l~~L~~L--~L~~n~l~~~~~---~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 140 TPKLTTL--SMSNNNLERIED---DTFQATTSLQNLQ 171 (390)
T ss_dssp CTTCCEE--ECCSSCCCBCCT---TTTSSCTTCCEEE
T ss_pred CCCCcEE--ECCCCccCccCh---hhccCCCCCCEEE
Confidence 4555555 355555544321 1234556666555
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=96.18 E-value=0.0037 Score=47.96 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=29.2
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
..+++|+.|++++|+|..+.... +. .+++|++| .+.+|.+....- ...+..+++|+.||-
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~-~~--~l~~L~~L--~l~~n~l~~~~l--~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFP-IG--HLKTLKEL--NVAHNLIQSFKL--PEYFSNLTNLEHLDL 156 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCC-CT--TCTTCCEE--ECCSSCCCCCCC--CGGGGGCTTCCEEEC
T ss_pred cCCccccEEECCCCCccccCchh-cc--cCCCCCEE--ECcCCccceecC--chhhccCCCCCEEEC
Confidence 34445555555555544433211 22 25666666 466666654210 013455666666654
No 73
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=96.18 E-value=0.0011 Score=51.66 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=21.3
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcc
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPI 81 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv 81 (147)
+..+++|+.|++++|+|+.+.....+.. +++|++| .+.+|.+
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~--l~~L~~L--~l~~n~l 138 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLS--LRNLIYL--DISHTHT 138 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTT--CTTCCEE--ECTTSCC
T ss_pred cCCCCCCCEEECCCCcccccccchhhhh--ccCCCEE--ECCCCcC
Confidence 3455666666666666655544333332 4555555 3444444
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=96.18 E-value=0.0017 Score=50.98 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=17.9
Q ss_pred CccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 66 IPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+++|++| .+.+|.+...+. .++..+++|+.||-
T Consensus 123 l~~L~~L--~L~~N~l~~~~~---~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 123 LGELQEL--YLKGNELKTLPP---GLLTPTPKLEKLSL 155 (290)
T ss_dssp CTTCCEE--ECTTSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred CCCCCEE--ECCCCCCCccCh---hhcccccCCCEEEC
Confidence 4556666 466666554332 23445666666653
No 75
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=96.15 E-value=0.0025 Score=52.66 Aligned_cols=14 Identities=43% Similarity=0.465 Sum_probs=6.4
Q ss_pred CccccccccccccCcc
Q psy4164 66 IPQLVTLDSVLYGNPI 81 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv 81 (147)
+++|+.| .+.+||+
T Consensus 289 l~~L~~L--~L~~Np~ 302 (452)
T 3zyi_A 289 LRYLVEL--HLHHNPW 302 (452)
T ss_dssp CTTCCEE--ECCSSCE
T ss_pred ccCCCEE--EccCCCc
Confidence 3444444 3445544
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=96.15 E-value=0.0022 Score=49.44 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=15.4
Q ss_pred CccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 66 IPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+++|++| .+.+|.+...+. .++..+++|+.||-
T Consensus 132 l~~L~~L--~Ls~n~l~~~~~---~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 132 LTKLTYL--SLGYNELQSLPK---GVFDKLTSLKELRL 164 (270)
T ss_dssp CTTCCEE--ECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred CcCCCEE--ECCCCcCCccCH---hHccCCcccceeEe
Confidence 3445555 355554443322 12345566665553
No 77
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=96.15 E-value=0.0031 Score=50.27 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=9.3
Q ss_pred hhccccccEEEeeCCCccc
Q psy4164 36 LRRVNSLRTLSLYGNPIEK 54 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~ 54 (147)
+..+++|+.|+|++|+|+.
T Consensus 72 ~~~l~~L~~L~L~~n~l~~ 90 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINT 90 (353)
T ss_dssp TTTCTTCCEEECTTSCCCE
T ss_pred hccCCCCCEEECCCCccCc
Confidence 3444555555555555444
No 78
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.14 E-value=0.0025 Score=53.46 Aligned_cols=29 Identities=31% Similarity=0.297 Sum_probs=15.2
Q ss_pred CccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 66 IPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
+++|++| .+.+|.+...+ +..+++|+.||
T Consensus 126 l~~L~~L--~l~~N~l~~l~------l~~l~~L~~L~ 154 (457)
T 3bz5_A 126 NPLLTYL--NCARNTLTEID------VSHNTQLTELD 154 (457)
T ss_dssp CTTCCEE--ECTTSCCSCCC------CTTCTTCCEEE
T ss_pred CCcCCEE--ECCCCccceec------cccCCcCCEEE
Confidence 4556666 45566555432 34455555554
No 79
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=96.12 E-value=0.0033 Score=48.46 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=21.4
Q ss_pred CccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 66 IPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+++|+.| .+.+|.+...+. ..+..+++|+.||-
T Consensus 200 l~~L~~L--~l~~n~l~~~~~---~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 200 LGRLMTL--YLFANNLSALPT---EALAPLRALQYLRL 232 (285)
T ss_dssp CTTCCEE--ECCSSCCSCCCH---HHHTTCTTCCEEEC
T ss_pred cccccEe--eCCCCcCCcCCH---HHcccCcccCEEec
Confidence 4667777 477777765442 45667788887764
No 80
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=96.11 E-value=0.0031 Score=49.65 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=35.6
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
.+..+++|+.|+|++|+|+.+.. ..+.. +++|+.| .+.+|.+...+. .+..+++|+.||-
T Consensus 211 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~--l~~L~~L--~L~~N~l~~lp~----~l~~l~~L~~L~l 270 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNSISAVDN-GSLAN--TPHLREL--HLNNNKLVKVPG----GLADHKYIQVVYL 270 (330)
T ss_dssp GGTTCTTCCEEECCSSCCCEECT-TTGGG--STTCCEE--ECCSSCCSSCCT----TTTTCSSCCEEEC
T ss_pred HhcCCCCCCEEECCCCcCceeCh-hhccC--CCCCCEE--ECCCCcCccCCh----hhccCCCcCEEEC
Confidence 35566777777777777766532 12333 5677777 477777665443 2455666666654
No 81
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.05 E-value=0.0037 Score=55.64 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=34.6
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|+|+.+.. .+.. |++|++| .|.+|.+...+. -+..+++|+.||-
T Consensus 266 ~~~l~~L~~L~Ls~N~l~~lp~--~~~~--l~~L~~L--~L~~N~l~~lp~----~~~~l~~L~~L~L 323 (727)
T 4b8c_D 266 IKNLSNLRVLDLSHNRLTSLPA--ELGS--CFQLKYF--YFFDNMVTTLPW----EFGNLCNLQFLGV 323 (727)
T ss_dssp GGGGTTCCEEECTTSCCSSCCS--SGGG--GTTCSEE--ECCSSCCCCCCS----STTSCTTCCCEEC
T ss_pred hhCCCCCCEEeCcCCcCCccCh--hhcC--CCCCCEE--ECCCCCCCccCh----hhhcCCCccEEeC
Confidence 5567777777777777775532 2333 5666666 466666655443 1455666666654
No 82
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.03 E-value=0.0036 Score=44.20 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=31.8
Q ss_pred ccc-cccEEEeeCCCccchhhhhhhhhccCccccccccccccCcc
Q psy4164 38 RVN-SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPI 81 (147)
Q Consensus 38 ~l~-~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv 81 (147)
.++ +|+.|+|++|+|+.+.. ..+.. +++|+.| .|.|||.
T Consensus 28 ~lp~~l~~L~Ls~N~l~~l~~-~~f~~--l~~L~~L--~L~~NP~ 67 (130)
T 3rfe_A 28 AFPVDTTELVLTGNNLTALPP-GLLDA--LPALRTA--HLGANPW 67 (130)
T ss_dssp CCCTTCSEEECTTSCCSSCCT-TTGGG--CTTCCEE--ECCSSCC
T ss_pred CCCcCCCEEECCCCcCCccCh-hhhhh--ccccCEE--EecCCCe
Confidence 444 79999999999999865 23444 8899999 7999998
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.03 E-value=0.0037 Score=53.70 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=16.0
Q ss_pred CccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 66 IPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+++|+.| .+.+|++...+ +..+|+|+.||-
T Consensus 323 l~~L~~L--~L~~N~l~~~~------~~~~~~L~~L~l 352 (597)
T 3oja_B 323 FDRLENL--YLDHNSIVTLK------LSTHHTLKNLTL 352 (597)
T ss_dssp HTTCSEE--ECCSSCCCCCC------CCTTCCCSEEEC
T ss_pred CCCCCEE--ECCCCCCCCcC------hhhcCCCCEEEe
Confidence 4555555 35555554432 445666666653
No 84
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.00 E-value=0.0032 Score=49.75 Aligned_cols=59 Identities=24% Similarity=0.228 Sum_probs=30.8
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|+|+.+.. ..+.. +++|+.| .+.+|.+...+. .+..+++|+.||-
T Consensus 213 l~~l~~L~~L~L~~N~l~~~~~-~~~~~--l~~L~~L--~L~~N~l~~lp~----~l~~l~~L~~L~l 271 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIRMIEN-GSLSF--LPTLREL--HLDNNKLSRVPA----GLPDLKLLQVVYL 271 (332)
T ss_dssp STTCTTCSCCBCCSSCCCCCCT-TGGGG--CTTCCEE--ECCSSCCCBCCT----TGGGCTTCCEEEC
T ss_pred hcCCCCCCEEECCCCcCCcCCh-hHhhC--CCCCCEE--ECCCCcCeecCh----hhhcCccCCEEEC
Confidence 4455666666666666655432 11222 5666666 466666654443 1445566665553
No 85
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=95.98 E-value=0.0031 Score=50.26 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=34.7
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
+..+++|++|+|++|+|+.+.. ..+.. +++|++| .+.+|++...+. ...+..+++|+.||
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~-~~~~~--l~~L~~L--~L~~n~l~~l~~--~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSS-SWFKP--LSSLTFL--NLLGNPYKTLGE--TSLFSHLTKLQILR 155 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCH-HHHTT--CTTCSEE--ECTTCCCSSSCS--SCSCTTCTTCCEEE
T ss_pred cCCCCCCCEEECCCCcCCcCCH-hHhCC--CccCCEE--ECCCCCCcccCc--hhhhccCCCCcEEE
Confidence 5567777788888877776543 11333 6777777 477776654321 01234455565555
No 86
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=95.98 E-value=0.0025 Score=49.56 Aligned_cols=58 Identities=19% Similarity=0.211 Sum_probs=28.9
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCC-CCcccc
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIP-QLVTLD 102 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp-~L~~LD 102 (147)
..+++|+.|+|++|+|+++... .+.. +++|+.| .+.+|++..... ..+..+| +|+.||
T Consensus 196 ~~l~~L~~L~L~~N~l~~~~~~-~~~~--l~~L~~L--~L~~N~l~~~~~---~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 196 NSLSSLQVLNMSHNNFFSLDTF-PYKC--LNSLQVL--DYSLNHIMTSKK---QELQHFPSSLAFLN 254 (306)
T ss_dssp TTCTTCCEEECTTSCCSBCCSG-GGTT--CTTCCEE--ECTTSCCCBCSS---SSCCCCCTTCCEEE
T ss_pred cCCCCCCEEECCCCccCccChh-hccC--cccCCEe--ECCCCCCcccCH---HHHHhhhccCCEEE
Confidence 3445555555555555544332 1222 5666666 466776654321 1233443 677654
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=95.98 E-value=0.0024 Score=50.14 Aligned_cols=33 Identities=18% Similarity=0.105 Sum_probs=18.4
Q ss_pred CccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 66 IPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+++|+.| .+.+|.+...+. ..+..+++|+.||-
T Consensus 99 l~~L~~L--~l~~N~l~~l~~---~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 99 LPALTVL--DVSFNRLTSLPL---GALRGLGELQELYL 131 (290)
T ss_dssp CTTCCEE--ECCSSCCCCCCS---STTTTCTTCCEEEC
T ss_pred CCCCCEE--ECCCCcCcccCH---HHHcCCCCCCEEEC
Confidence 5566666 466666654431 23455666766653
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=95.97 E-value=0.0042 Score=48.64 Aligned_cols=59 Identities=20% Similarity=0.144 Sum_probs=26.9
Q ss_pred ccccccEEEeeCCC-ccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 38 RVNSLRTLSLYGNP-IEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 38 ~l~~L~~L~L~~N~-I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
.+++|+.|+|++|. |++ ..+..+.. +++|++| .+.+|+-..... ...+..+|+|+.||-
T Consensus 220 ~~~~L~~L~l~~~~~l~~-~~~~~l~~--l~~L~~L--~l~~~~~~~~~~--~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKN-DCFQEFFQ--LNYLQHL--SLSRCYDIIPET--LLELGEIPTLKTLQV 279 (336)
T ss_dssp HCTTCSEEECTTCTTCCG-GGGGGGGG--CTTCCEE--ECTTCTTCCGGG--GGGGGGCTTCCEEEC
T ss_pred hCCCCCEEeCCCCCcCCH-HHHHHHhC--CCCCCEe--eCCCCCCCCHHH--HHHHhcCCCCCEEec
Confidence 45555555555555 222 22223333 4556666 455554111111 123455677776664
No 89
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=95.95 E-value=0.0043 Score=52.56 Aligned_cols=57 Identities=18% Similarity=0.096 Sum_probs=29.6
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
+..+++|++|+|++|+|+.+... .+++|++| .+.+|.+...+. ...+..+++|+.||
T Consensus 96 ~~~l~~L~~L~Ls~N~l~~lp~~------~l~~L~~L--~Ls~N~l~~l~~--p~~~~~l~~L~~L~ 152 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNRLQNISCC------PMASLRHL--DLSFNDFDVLPV--CKEFGNLTKLTFLG 152 (562)
T ss_dssp TTTCTTCCEEECTTSCCCEECSC------CCTTCSEE--ECCSSCCSBCCC--CGGGGGCTTCCEEE
T ss_pred hCCCCCCCEEECCCCcCCccCcc------ccccCCEE--ECCCCCccccCc--hHhhcccCcccEEe
Confidence 34455555555555555544332 25666666 466666654220 01345666666665
No 90
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.90 E-value=0.0038 Score=53.61 Aligned_cols=59 Identities=24% Similarity=0.281 Sum_probs=28.6
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
..+++|++|+|++|.|+.+..- .+.. +++|++| .+.+|.+..... ..+..+++|+.||-
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~-~~~~--l~~L~~L--~Ls~N~l~~~~~---~~~~~l~~L~~L~L 178 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRG-IFHN--TPKLTTL--SMSNNNLERIED---DTFQATTSLQNLQL 178 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT-TTTT--CTTCCEE--ECCSSCCCBCCT---TTTTTCTTCCEEEC
T ss_pred cCCCCCCEEEeeCCCCCCCCHH-Hhcc--CCCCCEE--EeeCCcCCCCCh---hhhhcCCcCcEEEC
Confidence 3445555555555555433220 1122 5566666 466666554321 13455666666653
No 91
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=95.89 E-value=0.0073 Score=46.30 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=30.8
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCc
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~ 84 (147)
+..+++|+.|+|++|+|+.+.--..+.. +++|+.| .+.+|.+...
T Consensus 120 ~~~l~~L~~L~l~~n~l~~~~l~~~~~~--l~~L~~L--~Ls~N~l~~~ 164 (276)
T 2z62_A 120 IGHLKTLKELNVAHNLIQSFKLPEYFSN--LTNLEHL--DLSSNKIQSI 164 (276)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGG--CTTCCEE--ECCSSCCCEE
T ss_pred cccCCCCCEEECcCCccceecCchhhcc--CCCCCEE--ECCCCCCCcC
Confidence 5677888888888888877432223443 6778888 5777777654
No 92
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.89 E-value=0.0047 Score=46.40 Aligned_cols=68 Identities=7% Similarity=0.024 Sum_probs=48.7
Q ss_pred hhhhhccccccEEEeeCCC-ccchhhhhhhhhc--cCccccccccccccCc-ccCcccHHHHHHHHCCCCccccCccc
Q psy4164 33 VFVLRRVNSLRTLSLYGNP-IEKIREYRAVVST--MIPQLVTLDSVLYGNP-IEKIREYRAVVSTMIPQLVTLDSVFI 106 (147)
Q Consensus 33 i~~L~~l~~L~~L~L~~N~-I~~~~~l~~L~~~--~lp~L~~Ld~~l~gNP-v~~~~~YR~~vi~~lp~L~~LD~~~V 106 (147)
+..+..|++|+.|+|+++. |++ .++..+... ..++|++| .+.+++ |++.. ..-++.+|+|+.||-...
T Consensus 78 L~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L--~Ls~C~~ITD~G---l~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 78 FDHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEM--EIISCGNVTDKG---IIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp GGGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEE--EEESCTTCCHHH---HHHGGGCTTCCEEEEESC
T ss_pred HHHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEE--EcCCCCcCCHHH---HHHHhcCCCCCEEECCCC
Confidence 3457889999999999996 666 566666641 13689999 589987 55432 234578999999986543
No 93
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=95.88 E-value=0.0068 Score=53.25 Aligned_cols=39 Identities=28% Similarity=0.549 Sum_probs=19.0
Q ss_pred cccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccC
Q psy4164 39 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEK 83 (147)
Q Consensus 39 l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~ 83 (147)
+++|+.|+|++|+|+.+.. .+.. +++|+.| .+.+||+..
T Consensus 260 ~~~L~~L~Ls~N~L~~lp~--~l~~--l~~L~~L--~L~~N~l~~ 298 (622)
T 3g06_A 260 PSGLLSLSVYRNQLTRLPE--SLIH--LSSETTV--NLEGNPLSE 298 (622)
T ss_dssp CTTCCEEECCSSCCCSCCG--GGGG--SCTTCEE--ECCSCCCCH
T ss_pred cccCcEEeCCCCCCCcCCH--HHhh--ccccCEE--EecCCCCCC
Confidence 3444444444444443322 1332 5666666 466666653
No 94
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=95.81 E-value=0.0048 Score=51.61 Aligned_cols=61 Identities=23% Similarity=0.289 Sum_probs=28.8
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|++|+|++|+|+.+.. ..+.. +++|++| .+.+|.+..... ...+..+++|+.||-
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~-~~~~~--l~~L~~L--~Ls~n~l~~~~~--~~~~~~l~~L~~L~L 130 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSS-SWFGP--LSSLKYL--NLMGNPYQTLGV--TSLFPNLTNLQTLRI 130 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCH-HHHTT--CTTCCEE--ECTTCCCSSSCS--SCSCTTCTTCCEEEE
T ss_pred ccccccCCEEECCCCccCccCH-HHhcc--CCCCcEE--ECCCCcccccch--hhhhhccCCccEEEC
Confidence 3444555555555555544322 11222 5666666 466666553210 013445666666653
No 95
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=95.81 E-value=0.004 Score=48.98 Aligned_cols=63 Identities=21% Similarity=0.160 Sum_probs=40.6
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
..+++|+.|+|++|+|+.+..+..-....+++|+.| .+.+|.+..... ...+..+++|+.||-
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L--~Ls~N~l~~~~~--~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL--DLSHNSLRDAAG--APSCDWPSQLNSLNL 260 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE--ECTTSCCCSSCC--CSCCCCCTTCCEEEC
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE--ECCCCcCCcccc--hhhhhhcCCCCEEEC
Confidence 677888888888888887665532211136889999 588888876331 001234677777764
No 96
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=95.79 E-value=0.0057 Score=51.15 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=41.2
Q ss_pred ccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 38 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 38 ~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
.+++|+.|+|++|+|+.+... . .+++|+.| .+.+|.+..... ..+..+++|+.||-
T Consensus 449 ~l~~L~~L~Ls~N~l~~ip~~---~--~l~~L~~L--~Ls~N~l~~~~~---~~~~~l~~L~~L~l 504 (549)
T 2z81_A 449 FLPRLQELYISRNKLKTLPDA---S--LFPVLLVM--KISRNQLKSVPD---GIFDRLTSLQKIWL 504 (549)
T ss_dssp CCTTCCEEECCSSCCSSCCCG---G--GCTTCCEE--ECCSSCCCCCCT---TGGGGCTTCCEEEC
T ss_pred cCChhcEEECCCCccCcCCCc---c--cCccCCEE--ecCCCccCCcCH---HHHhcCcccCEEEe
Confidence 678888888888888876653 2 27888888 588888876542 24567888888764
No 97
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=95.77 E-value=0.0039 Score=48.08 Aligned_cols=13 Identities=31% Similarity=0.276 Sum_probs=5.1
Q ss_pred ccccEEEeeCCCc
Q psy4164 40 NSLRTLSLYGNPI 52 (147)
Q Consensus 40 ~~L~~L~L~~N~I 52 (147)
++|+.|+|++|+|
T Consensus 105 ~~L~~L~l~~n~l 117 (285)
T 1ozn_A 105 GRLHTLHLDRCGL 117 (285)
T ss_dssp TTCCEEECTTSCC
T ss_pred cCCCEEECCCCcC
Confidence 3333333333333
No 98
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=95.76 E-value=0.0091 Score=46.95 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=8.7
Q ss_pred hccccccEEEeeCCCccc
Q psy4164 37 RRVNSLRTLSLYGNPIEK 54 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~ 54 (147)
..+++|+.|+|++|+|+.
T Consensus 97 ~~l~~L~~L~Ls~n~l~~ 114 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKE 114 (330)
T ss_dssp TTCTTCCEEECCSSCCSB
T ss_pred cCCCCCCEEECCCCcCCc
Confidence 344455555555554443
No 99
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.73 E-value=0.0066 Score=51.13 Aligned_cols=59 Identities=19% Similarity=0.001 Sum_probs=32.6
Q ss_pred ccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 38 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 38 ~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
.+++|+.|+|++|+|++..-...+. .+++|+.| .+.+|++.... -..++..+|+|+.||
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~~~--~~~~L~~L--~l~~n~l~~~~--~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEFSR--GCPNLQKL--EMRGCCFSERA--IAAAVTKLPSLRYLW 519 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHHHT--CCTTCCEE--EEESCCCBHHH--HHHHHHHCSSCCEEE
T ss_pred hCccceEeeccCCCCCHHHHHHHHh--cCcccCee--eccCCCCcHHH--HHHHHHhcCccCeeE
Confidence 3666777777777766532211222 26777777 47777753321 223445667777665
No 100
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=95.71 E-value=0.0044 Score=52.51 Aligned_cols=59 Identities=22% Similarity=0.185 Sum_probs=44.1
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCc
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSV 104 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~ 104 (147)
.+..+++|++|+|++|+|+.+.. ..+.. +++|++| .+.+|.+..-+.. .+++|+.||-.
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~--l~~L~~L--~Ls~N~l~~lp~~------~l~~L~~L~Ls 129 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLDF-HVFLF--NQDLEYL--DVSHNRLQNISCC------PMASLRHLDLS 129 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEECT-TTTTT--CTTCCEE--ECTTSCCCEECSC------CCTTCSEEECC
T ss_pred hhccCCCccEEECCCCCCCcCCH-HHhCC--CCCCCEE--ECCCCcCCccCcc------ccccCCEEECC
Confidence 46778889999999998887632 22443 7889999 5999998866653 68899998753
No 101
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=95.68 E-value=0.0049 Score=51.36 Aligned_cols=59 Identities=24% Similarity=0.126 Sum_probs=47.0
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCc
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSV 104 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~ 104 (147)
.+..+++|++|+|++|+|+.+.. ..+.. +++|++| .+.+|.+...+.. .+++|++||-.
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~--l~~L~~L--~Ls~N~l~~lp~~------~l~~L~~L~L~ 98 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLDI-SVFKF--NQELEYL--DLSHNKLVKISCH------PTVNLKHLDLS 98 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEEG-GGGTT--CTTCCEE--ECCSSCCCEEECC------CCCCCSEEECC
T ss_pred hccccccccEEecCCCccCCcCh-HHhhc--ccCCCEE--ecCCCceeecCcc------ccCCccEEecc
Confidence 46789999999999999988632 23444 8999999 5999999876653 69999999853
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=95.66 E-value=0.018 Score=46.17 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=26.8
Q ss_pred ccccEEEeeCCCccchhh--hhh-hhhccC-ccccccccccccCcccCccc-HHHHHHHHC-CCCccccCc
Q psy4164 40 NSLRTLSLYGNPIEKIRE--YRA-VVSTMI-PQLVTLDSVLYGNPIEKIRE-YRAVVSTMI-PQLVTLDSV 104 (147)
Q Consensus 40 ~~L~~L~L~~N~I~~~~~--l~~-L~~~~l-p~L~~Ld~~l~gNPv~~~~~-YR~~vi~~l-p~L~~LD~~ 104 (147)
++|+.|+|++|+|++... +.. +.. + ++|++| .+.+|.+..... .-...+..+ ++|+.||-.
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~~L~~L--~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 146 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAA--IPFTITVL--DLGWNDFSSKSSSEFKQAFSNLPASITSLNLR 146 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHT--SCTTCCEE--ECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHh--CCCCccEE--ECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc
Confidence 555555555555544221 111 111 3 556666 466666554331 111122232 366666543
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.64 E-value=0.0033 Score=53.04 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=18.3
Q ss_pred cccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccC
Q psy4164 39 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEK 83 (147)
Q Consensus 39 l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~ 83 (147)
+++|+.|+|++|+|+.+.. .+.. +++|+.| .+.+|.++.
T Consensus 190 l~~L~~L~Ls~N~l~~~~~--~~~~--l~~L~~L--~Ls~N~l~~ 228 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAFMGP--EFQS--AAGVTWI--SLRNNKLVL 228 (487)
T ss_dssp CTTCCEEECCSSCCCEECG--GGGG--GTTCSEE--ECTTSCCCE
T ss_pred CCCCCEEECCCCCCCCCCH--hHcC--CCCccEE--EecCCcCcc
Confidence 4455555555555544322 1222 4555555 355555544
No 104
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=95.63 E-value=0.0036 Score=51.71 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=10.9
Q ss_pred hhccccccEEEeeCCCccch
Q psy4164 36 LRRVNSLRTLSLYGNPIEKI 55 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~ 55 (147)
+..+++|+.|+|++|.|+.+
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~ 71 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAV 71 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEE
T ss_pred ccCCCCCCEEECCCCccCEe
Confidence 44555555555555555543
No 105
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=95.62 E-value=0.004 Score=49.07 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=27.2
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCc
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~ 84 (147)
.+..+++|+.|+|++|+|+.... +.. +++|++| .+.+|.+...
T Consensus 53 ~~~~l~~L~~L~Ls~n~l~~~~~---~~~--l~~L~~L--~Ls~n~l~~l 95 (317)
T 3o53_A 53 DLAPFTKLELLNLSSNVLYETLD---LES--LSTLRTL--DLNNNYVQEL 95 (317)
T ss_dssp HHTTCTTCCEEECTTSCCEEEEE---ETT--CTTCCEE--ECCSSEEEEE
T ss_pred HhhCCCcCCEEECCCCcCCcchh---hhh--cCCCCEE--ECcCCccccc
Confidence 35566777777777777765543 333 6777777 4777766543
No 106
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=95.56 E-value=0.0048 Score=50.96 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=12.1
Q ss_pred hhccccccEEEeeCCCccch
Q psy4164 36 LRRVNSLRTLSLYGNPIEKI 55 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~ 55 (147)
+..+++|+.|+|++|+|+.+
T Consensus 76 ~~~l~~L~~L~L~~n~l~~~ 95 (477)
T 2id5_A 76 FNNLFNLRTLGLRSNRLKLI 95 (477)
T ss_dssp TTTCTTCCEEECCSSCCCSC
T ss_pred hhCCccCCEEECCCCcCCcc
Confidence 44566666666666666554
No 107
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=95.55 E-value=0.0066 Score=47.90 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=8.2
Q ss_pred hhccccccEEEeeCCCcc
Q psy4164 36 LRRVNSLRTLSLYGNPIE 53 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~ 53 (147)
+..+++|++|+|++|+|+
T Consensus 97 l~~l~~L~~L~Ls~n~l~ 114 (313)
T 1ogq_A 97 IAKLTQLHYLYITHTNVS 114 (313)
T ss_dssp GGGCTTCSEEEEEEECCE
T ss_pred HhcCCCCCEEECcCCeeC
Confidence 334444444444444443
No 108
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=95.51 E-value=0.0094 Score=49.86 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=34.5
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCc--ccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI--REYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~--~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|++|++++|+|+.+.... +.. +++|++| .+.+|.+... +. .+..+++|+.||-
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~-~~~--l~~L~~L--~L~~n~l~~~~lp~----~~~~l~~L~~L~l 156 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFP-IGH--LKTLKEL--NVAHNLIQSFKLPE----YFSNLTNLEHLDL 156 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCS-CTT--CTTCCEE--ECCSSCCCCCCCCG----GGGGCTTCCEEEC
T ss_pred hcCccccccccccccccccCCCcc-ccc--cccccEE--ecCCCccceecChh----hhcccCCCCEEeC
Confidence 445566666666666665554321 222 6677777 4777776642 22 3566777777764
No 109
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.44 E-value=0.0056 Score=51.63 Aligned_cols=53 Identities=26% Similarity=0.281 Sum_probs=36.0
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
.+..+++|+.|+|++|.|+.... +.. +++|++| .+.+|.+...+. .|+|+.||
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~---l~~--l~~L~~L--~Ls~N~l~~l~~--------~~~L~~L~ 105 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLD---LES--LSTLRTL--DLNNNYVQELLV--------GPSIETLH 105 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEE---CTT--CTTCCEE--ECCSSEEEEEEE--------CTTCCEEE
T ss_pred HHhCCCCCCEEEeeCCCCCCCcc---ccc--CCCCCEE--EecCCcCCCCCC--------CCCcCEEE
Confidence 45677888888888888876544 433 7888888 588887765432 25666555
No 110
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=95.39 E-value=0.0045 Score=51.83 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=18.2
Q ss_pred CccccccccccccCcccCcccHHHHHHHHCCCCccccCc
Q psy4164 66 IPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSV 104 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~ 104 (147)
+++|++| .+.+|.+...+.+ .+..+++|+.||-.
T Consensus 99 l~~L~~L--~L~~n~l~~l~~~---~~~~l~~L~~L~L~ 132 (570)
T 2z63_A 99 LSSLQKL--VAVETNLASLENF---PIGHLKTLKELNVA 132 (570)
T ss_dssp CTTCCEE--ECTTSCCCCSTTC---SCTTCTTCCEEECC
T ss_pred ccccccc--cccccccccCCCc---cccccccccEEecC
Confidence 4555555 3555555443321 25567777777653
No 111
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=95.39 E-value=0.0038 Score=46.96 Aligned_cols=20 Identities=10% Similarity=0.346 Sum_probs=10.7
Q ss_pred ccccccEEEeeCCCccchhh
Q psy4164 38 RVNSLRTLSLYGNPIEKIRE 57 (147)
Q Consensus 38 ~l~~L~~L~L~~N~I~~~~~ 57 (147)
.+++|+.|++++|+|+.+..
T Consensus 103 ~l~~L~~L~l~~n~l~~lp~ 122 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKMFPD 122 (239)
T ss_dssp CCTTCCEEEEEEECCCSCCC
T ss_pred CCCCCCEEeCCCCCCccccc
Confidence 45555555555555555443
No 112
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=95.36 E-value=0.0049 Score=50.29 Aligned_cols=62 Identities=19% Similarity=0.140 Sum_probs=31.5
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|++|+|++|+|..+.. ..+.. +++|++| .+.+|.+.... .....+..+++|+.||-
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~-~~~~~--l~~L~~L--~L~~n~l~~~~-~~~~~~~~l~~L~~L~L 136 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLET-GAFNG--LANLEVL--TLTQCNLDGAV-LSGNFFKPLTSLEMLVL 136 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECT-TTTTT--CTTCCEE--ECTTSCCBTHH-HHSSTTTTCTTCCEEEC
T ss_pred ccccccCCEEeCCCCccCccCh-hhccC--cccCCEE--eCCCCCCCccc-cCcccccCcccCCEEEC
Confidence 4455566666666666554311 11222 5666666 46666655311 01123556677777654
No 113
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=95.35 E-value=0.0045 Score=48.59 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=22.0
Q ss_pred hccccccEEEeeCCCccchhhhhh-h-hhccCccccccccccccCcccC
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRA-V-VSTMIPQLVTLDSVLYGNPIEK 83 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~-L-~~~~lp~L~~Ld~~l~gNPv~~ 83 (147)
..+++|++|+|++|+|+.+..+.. + .. +++|++| .+.+|.+..
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~--l~~L~~L--~Ls~N~l~~ 238 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAA--GVQPHSL--DLSHNSLRA 238 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHH--TCCCSSE--ECTTSCCCC
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhc--CCCCCEE--ECCCCCCCc
Confidence 356666666666666665544311 1 12 4555555 355555443
No 114
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=95.23 E-value=0.0065 Score=51.54 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=31.3
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
..+++|++|+|++|+|+.+.. ..+.. +++|++| .+.+|.+...+.. .+..+++|+.||-
T Consensus 77 ~~l~~L~~L~Ls~n~l~~~~p-~~~~~--l~~L~~L--~L~~n~l~~~~~~---~~~~l~~L~~L~L 135 (606)
T 3vq2_A 77 HGLHHLSNLILTGNPIQSFSP-GSFSG--LTSLENL--VAVETKLASLESF---PIGQLITLKKLNV 135 (606)
T ss_dssp TTCTTCCEEECTTCCCCCCCT-TSSTT--CTTCCEE--ECTTSCCCCSSSS---CCTTCTTCCEEEC
T ss_pred hchhhcCEeECCCCcccccCh-hhcCC--cccCCEE--EccCCcccccccc---ccCCCCCCCEEeC
Confidence 445555555555555554411 11222 5666666 4666666544321 2566777777764
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.22 E-value=0.0075 Score=53.62 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=37.4
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|.|+.+.. .+.. |++|+.| .|.+|.+...+. -+..|++|++||-
T Consensus 243 ~~~l~~L~~L~Ls~N~l~~lp~--~~~~--l~~L~~L--~Ls~N~l~~lp~----~~~~l~~L~~L~L 300 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNSLTELPA--EIKN--LSNLRVL--DLSHNRLTSLPA----ELGSCFQLKYFYF 300 (727)
T ss_dssp GGGCCSCSCCBCTTSCCSCCCG--GGGG--GTTCCEE--ECTTSCCSSCCS----SGGGGTTCSEEEC
T ss_pred hcCCCCCCEEEeeCCcCcccCh--hhhC--CCCCCEE--eCcCCcCCccCh----hhcCCCCCCEEEC
Confidence 3466777777777777775432 2433 6778888 478887775543 2466777777764
No 116
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=95.18 E-value=0.013 Score=51.36 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=11.4
Q ss_pred ccccccEEEeeCCCccchh
Q psy4164 38 RVNSLRTLSLYGNPIEKIR 56 (147)
Q Consensus 38 ~l~~L~~L~L~~N~I~~~~ 56 (147)
.+++|++|+|++|+|+.+.
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp 97 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLP 97 (622)
T ss_dssp CCTTCCEEEECSCCCSCCC
T ss_pred cCCCCCEEEcCCCcCCcCC
Confidence 4556666666666666543
No 117
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=95.18 E-value=0.0071 Score=51.28 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=18.7
Q ss_pred CccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 66 IPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+|+|++| .+.+|++....-.....+..+++|+.||-
T Consensus 448 l~~L~~L--~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 448 LPALQHL--NLQGNHFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp CTTCCEE--ECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred CCCCCEE--ECCCCCCCccccccchhhccCCCccEEEC
Confidence 5666666 46666665421001123556677776654
No 118
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=95.17 E-value=0.0098 Score=46.90 Aligned_cols=58 Identities=19% Similarity=0.096 Sum_probs=29.8
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccC-cccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEK-IREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~-~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|+|+.... .+. .+++|++| .+.+|.+.. .+. .+..+++|+.||-
T Consensus 217 ~~~l~~L~~L~L~~N~l~~~~~--~~~--~l~~L~~L--~Ls~N~l~~~~p~----~l~~l~~L~~L~L 275 (313)
T 1ogq_A 217 FGSDKNTQKIHLAKNSLAFDLG--KVG--LSKNLNGL--DLRNNRIYGTLPQ----GLTQLKFLHSLNV 275 (313)
T ss_dssp CCTTSCCSEEECCSSEECCBGG--GCC--CCTTCCEE--ECCSSCCEECCCG----GGGGCTTCCEEEC
T ss_pred HhcCCCCCEEECCCCceeeecC--ccc--ccCCCCEE--ECcCCcccCcCCh----HHhcCcCCCEEEC
Confidence 3455566666666666553211 122 25666666 466666652 222 2455666666653
No 119
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.15 E-value=0.011 Score=48.11 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=30.1
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCc----cccccccccccCcccCcc-cHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIP----QLVTLDSVLYGNPIEKIR-EYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp----~L~~Ld~~l~gNPv~~~~-~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|+|.+.. +..+.. .++ +|++| .+.+|.+.... ..-...+..+++|+.||-
T Consensus 52 l~~~~~L~~L~Ls~n~l~~~~-~~~l~~-~l~~~~~~L~~L--~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 120 (461)
T 1z7x_W 52 LRVNPALAELNLRSNELGDVG-VHCVLQ-GLQTPSCKIQKL--SLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120 (461)
T ss_dssp HHTCTTCCEEECTTCCCHHHH-HHHHHH-TTCSTTCCCCEE--ECTTSCCBGGGHHHHHHHTTSCTTCCEEEC
T ss_pred HHhCCCcCEEeCCCCcCChHH-HHHHHH-HHhhCCCceeEE--EccCCCCCHHHHHHHHHHHccCCceeEEEC
Confidence 344566666666666665421 111211 122 46666 46666555322 111233445555665554
No 120
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=95.11 E-value=0.0066 Score=53.75 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=7.7
Q ss_pred hhccccccEEEeeCCCc
Q psy4164 36 LRRVNSLRTLSLYGNPI 52 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I 52 (147)
+..+++|++|+|++|.+
T Consensus 122 l~~l~~L~~L~Ls~n~l 138 (768)
T 3rgz_A 122 LGSCSGLKFLNVSSNTL 138 (768)
T ss_dssp GGGCTTCCEEECCSSEE
T ss_pred HhCCCCCCEEECcCCcc
Confidence 33444444444444444
No 121
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=95.11 E-value=0.009 Score=50.65 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=15.2
Q ss_pred CccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 66 IPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
+++|+.| .+.+|.+..... ..+..+++| .||
T Consensus 499 l~~L~~L--~Ls~N~l~~~~~---~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 499 LKMMNHV--DLSHNRLTSSSI---EALSHLKGI-YLN 529 (606)
T ss_dssp CTTCCEE--ECCSSCCCGGGG---GGGTTCCSC-EEE
T ss_pred ccCCCEE--ECCCCccCcCCh---hHhCccccc-EEE
Confidence 4556666 366666554321 233445555 553
No 122
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.03 E-value=0.016 Score=47.44 Aligned_cols=43 Identities=28% Similarity=0.275 Sum_probs=19.8
Q ss_pred hccccccEEEeeCCCccchhh--h-hhhhhccCccccccccccccCcccC
Q psy4164 37 RRVNSLRTLSLYGNPIEKIRE--Y-RAVVSTMIPQLVTLDSVLYGNPIEK 83 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~--l-~~L~~~~lp~L~~Ld~~l~gNPv~~ 83 (147)
...++|+.|+|++|.|++... + ..+.. .++|++| .+.+|++..
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~--~~~L~~L--~Ls~N~i~~ 253 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTAALALARAARE--HPSLELL--HLYFNELSS 253 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHHHHHHHHHHHH--CSSCCEE--ECTTSSCCH
T ss_pred hcCCCcCeEECCCCCCCHHHHHHHHHHHHh--CCCCCEE--eccCCCCCH
Confidence 334455555555555544221 1 11211 4566666 366666544
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=94.92 E-value=0.016 Score=50.50 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=9.1
Q ss_pred CccccccccccccCcccCcc
Q psy4164 66 IPQLVTLDSVLYGNPIEKIR 85 (147)
Q Consensus 66 lp~L~~Ld~~l~gNPv~~~~ 85 (147)
+++|+.| .+.+|.+...+
T Consensus 159 l~~L~~L--~Ls~N~L~~lp 176 (571)
T 3cvr_A 159 PTSLEVL--SVRNNQLTFLP 176 (571)
T ss_dssp CTTCCEE--ECCSSCCSCCC
T ss_pred CCCcCEE--ECCCCCCCCcc
Confidence 3455555 35555555443
No 124
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=94.91 E-value=0.014 Score=50.57 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=26.7
Q ss_pred cccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCcccc
Q psy4164 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102 (147)
Q Consensus 41 ~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD 102 (147)
+|+.|+|++|+|+.+.. .+....+++|+.| .+.+|.+...+. -+..+++|+.||
T Consensus 489 ~L~~L~Ls~N~l~~lp~--~~~~~~l~~L~~L--~Ls~N~l~~ip~----~~~~l~~L~~L~ 542 (636)
T 4eco_A 489 LLTSIDLRFNKLTKLSD--DFRATTLPYLVGI--DLSYNSFSKFPT----QPLNSSTLKGFG 542 (636)
T ss_dssp GCCEEECCSSCCCBCCG--GGSTTTCTTCCEE--ECCSSCCSSCCC----GGGGCSSCCEEE
T ss_pred CccEEECcCCcCCccCh--hhhhccCCCcCEE--ECCCCCCCCcCh----hhhcCCCCCEEE
Confidence 45555555555543322 1110025666666 466666665432 234566666665
No 125
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=94.90 E-value=0.011 Score=49.64 Aligned_cols=58 Identities=12% Similarity=0.053 Sum_probs=36.2
Q ss_pred cccccEEEeeCCCccchhhhhhh-hhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 39 VNSLRTLSLYGNPIEKIREYRAV-VSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 39 l~~L~~L~L~~N~I~~~~~l~~L-~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+++|+.|+|++|.|++. .+..+ .. +|+|+.| .+.+|++.+.. -..++..+|+|+.||-
T Consensus 455 ~~~L~~L~L~~~~i~~~-~~~~l~~~--~~~L~~L--~L~~n~~~~~~--~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDL-GMHHVLSG--CDSLRKL--EIRDCPFGDKA--LLANASKLETMRSLWM 513 (594)
T ss_dssp CTTCCEEEEESCCSSHH-HHHHHHHH--CTTCCEE--EEESCSCCHHH--HHHTGGGGGGSSEEEE
T ss_pred chhccEeeccCCCCcHH-HHHHHHhc--CCCcCEE--ECcCCCCcHHH--HHHHHHhCCCCCEEee
Confidence 67788888888877553 33333 33 7888888 57888873221 1234456778887763
No 126
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=94.84 E-value=0.035 Score=46.62 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=42.7
Q ss_pred hccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCcc
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~ 100 (147)
..+++|+.|+|++|++++ ..+..+.. .+|+|+.| .+.+|++... . -..+...+|+|+.
T Consensus 478 ~~~~~L~~L~L~~n~~~~-~~~~~~~~-~l~~L~~L--~l~~~~~~~~-~-~~~l~~~lp~l~i 535 (594)
T 2p1m_B 478 SGCDSLRKLEIRDCPFGD-KALLANAS-KLETMRSL--WMSSCSVSFG-A-CKLLGQKMPKLNV 535 (594)
T ss_dssp HHCTTCCEEEEESCSCCH-HHHHHTGG-GGGGSSEE--EEESSCCBHH-H-HHHHHHHCTTEEE
T ss_pred hcCCCcCEEECcCCCCcH-HHHHHHHH-hCCCCCEE--eeeCCCCCHH-H-HHHHHHhCCCCEE
Confidence 678999999999999944 44443432 48999999 6999999432 2 3446688999854
No 127
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=94.84 E-value=0.026 Score=42.30 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=44.6
Q ss_pred ccccEEEeeCCC-ccchhhhhhhhhccCccccccccccccCc-ccCcccHHHHHHHHCCCCcc
Q psy4164 40 NSLRTLSLYGNP-IEKIREYRAVVSTMIPQLVTLDSVLYGNP-IEKIREYRAVVSTMIPQLVT 100 (147)
Q Consensus 40 ~~L~~L~L~~N~-I~~~~~l~~L~~~~lp~L~~Ld~~l~gNP-v~~~~~YR~~vi~~lp~L~~ 100 (147)
++|+.|+|+++. |++ .++..+.. +|+|++| .+.+.| +++...-...+-..+|+++.
T Consensus 114 ~~L~~L~Ls~C~~ITD-~Gl~~L~~--~~~L~~L--~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTD-KGIIALHH--FRNLKYL--FLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp HHCCEEEEESCTTCCH-HHHHHGGG--CTTCCEE--EEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCEEEcCCCCcCCH-HHHHHHhc--CCCCCEE--ECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 579999999985 777 67777865 8999999 699998 55544446778889999875
No 128
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=94.74 E-value=0.017 Score=49.66 Aligned_cols=61 Identities=25% Similarity=0.352 Sum_probs=34.1
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccCc
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSV 104 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~~ 104 (147)
+..+++|++|+|++|+|+.+.. ..+.. +++|++| .+.+|.+...+. ..+..+++|+.||-.
T Consensus 69 ~~~l~~L~~L~L~~n~l~~l~~-~~~~~--l~~L~~L--~L~~n~l~~~~~---~~~~~l~~L~~L~Ls 129 (680)
T 1ziw_A 69 CQKLPMLKVLNLQHNELSQLSD-KTFAF--CTNLTEL--HLMSNSIQKIKN---NPFVKQKNLITLDLS 129 (680)
T ss_dssp HHHCTTCCEEECCSSCCCCCCT-TTTTT--CTTCSEE--ECCSSCCCCCCS---CTTTTCTTCCEEECC
T ss_pred HhcccCcCEEECCCCccCccCh-hhhcc--CCCCCEE--ECCCCccCccCh---hHccccCCCCEEECC
Confidence 3455566666666666554432 01222 5677777 477776655431 134567788877753
No 129
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=94.66 E-value=0.037 Score=43.47 Aligned_cols=42 Identities=26% Similarity=0.312 Sum_probs=25.2
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccC
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEK 83 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~ 83 (147)
+..+++|+.|+|++|+|+.+..- +.. +++|+.| .+.+|++..
T Consensus 237 ~~~l~~L~~L~L~~N~l~~lp~~--l~~--l~~L~~L--~l~~N~l~~ 278 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSRVPAG--LPD--LKLLQVV--YLHTNNITK 278 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTT--GGG--CTTCCEE--ECCSSCCCB
T ss_pred hhCCCCCCEEECCCCcCeecChh--hhc--CccCCEE--ECCCCCCCc
Confidence 55667777777777777755431 332 5666666 466666554
No 130
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=94.65 E-value=0.018 Score=49.50 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=6.5
Q ss_pred cccccEEEeeCCCcc
Q psy4164 39 VNSLRTLSLYGNPIE 53 (147)
Q Consensus 39 l~~L~~L~L~~N~I~ 53 (147)
+++|+.|+|++|+|+
T Consensus 535 l~~L~~L~L~~N~l~ 549 (680)
T 1ziw_A 535 LSHLHILNLESNGFD 549 (680)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CCCCCEEECCCCCCC
Confidence 344444444444444
No 131
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=94.57 E-value=0.0067 Score=45.59 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=20.3
Q ss_pred hccccccEEEeeC-CCccchhhhhhhhhccCccccccccccccCcccC
Q psy4164 37 RRVNSLRTLSLYG-NPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEK 83 (147)
Q Consensus 37 ~~l~~L~~L~L~~-N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~ 83 (147)
..+++|+.|+|++ |+|+.+..- .+. .+++|++| .+.+|.+..
T Consensus 77 ~~l~~L~~L~l~~~n~l~~i~~~-~f~--~l~~L~~L--~l~~n~l~~ 119 (239)
T 2xwt_C 77 YNLSKVTHIEIRNTRNLTYIDPD-ALK--ELPLLKFL--GIFNTGLKM 119 (239)
T ss_dssp ESCTTCCEEEEEEETTCCEECTT-SEE--CCTTCCEE--EEEEECCCS
T ss_pred CCCcCCcEEECCCCCCeeEcCHH-HhC--CCCCCCEE--eCCCCCCcc
Confidence 3455555666655 555544320 111 14555555 355555544
No 132
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=94.45 E-value=0.01 Score=50.33 Aligned_cols=18 Identities=11% Similarity=0.396 Sum_probs=8.3
Q ss_pred ccccccEEEeeCCCccch
Q psy4164 38 RVNSLRTLSLYGNPIEKI 55 (147)
Q Consensus 38 ~l~~L~~L~L~~N~I~~~ 55 (147)
.+++|+.|++++|+|...
T Consensus 397 ~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp TCTTCCEEECTTSEEEST
T ss_pred CCCCCCeeECCCCccCCc
Confidence 344444444444444443
No 133
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.42 E-value=0.037 Score=40.59 Aligned_cols=66 Identities=20% Similarity=0.174 Sum_probs=30.6
Q ss_pred hccccccEEEeeCCCccchhhhhhhhh--ccCcccccccccc--ccCcccCcc-cHHHHHHHHCCCCccccCcc
Q psy4164 37 RRVNSLRTLSLYGNPIEKIREYRAVVS--TMIPQLVTLDSVL--YGNPIEKIR-EYRAVVSTMIPQLVTLDSVF 105 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~l~~L~~--~~lp~L~~Ld~~l--~gNPv~~~~-~YR~~vi~~lp~L~~LD~~~ 105 (147)
...++|+.|+|++|.|.+.. +..+.. ...+.|++| .+ .+|++.... ..-...+...++|+.||-..
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g-~~~l~~~L~~n~~L~~L--~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSG-ILALVEALQSNTSLIEL--RIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHH-HHHHHHGGGGCSSCCEE--ECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HhCCCcCEEECcCCcCCHHH-HHHHHHHHHhCCCceEE--EecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 34455555555555555421 111111 013556666 35 566665432 12233445556666666433
No 134
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=94.22 E-value=0.036 Score=49.53 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=7.9
Q ss_pred hccccccEEEeeCCCcc
Q psy4164 37 RRVNSLRTLSLYGNPIE 53 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~ 53 (147)
..+++|+.|+|++|.++
T Consensus 94 ~~l~~L~~L~Ls~n~l~ 110 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLS 110 (844)
T ss_dssp CSCSSCCCEECTTCCCS
T ss_pred cCCcccCEeeCcCCCCC
Confidence 34444444444444444
No 135
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=94.21 E-value=0.036 Score=46.61 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=41.1
Q ss_pred hccccccEEEeeCCCccchhh--hhhhhhccCccccccccccccCcccCcc-cHHHHHHHHCCCCccccCccc
Q psy4164 37 RRVNSLRTLSLYGNPIEKIRE--YRAVVSTMIPQLVTLDSVLYGNPIEKIR-EYRAVVSTMIPQLVTLDSVFI 106 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~~~~~--l~~L~~~~lp~L~~Ld~~l~gNPv~~~~-~YR~~vi~~lp~L~~LD~~~V 106 (147)
..|++|+.|+|++|.+.+... +..+.. .+|+|++| .+.+|.+.... ..-..++..+|+|+.|+-...
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~-~~~~L~~L--~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQ-HNTSLEVL--NFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHH-HCCCCCEE--ECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHh-cCCCccEE--EeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 378888888888888765421 333321 36778888 57777765321 223345666777777765443
No 136
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=94.19 E-value=0.013 Score=53.60 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=31.9
Q ss_pred hhccccccEEEeeCCC-ccc--h-hhhhhhh--hccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 36 LRRVNSLRTLSLYGNP-IEK--I-REYRAVV--STMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~-I~~--~-~~l~~L~--~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+..+++|+.|+|++|+ |+. + ..+..+. ...+|+|+.| .+.+|.+...+. ...+..+++|+.||-
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L--~Ls~N~L~~ip~--~~~l~~L~~L~~L~L 580 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF--YMGYNNLEEFPA--SASLQKMVKLGLLDC 580 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE--ECCSSCCCBCCC--HHHHTTCTTCCEEEC
T ss_pred HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE--EeeCCcCCccCC--hhhhhcCCCCCEEEC
Confidence 5566677777777776 553 2 1222221 0114566666 466666553332 123455555555553
No 137
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=94.17 E-value=0.027 Score=51.49 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=26.1
Q ss_pred cccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 41 ~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
+|+.|+|++|+|+.+.. .+....+++|+.| .+.+|.+...+. -+..+++|+.||-
T Consensus 729 ~L~~L~Ls~N~L~~lp~--~l~~~~l~~L~~L--~Ls~N~L~~lp~----~l~~L~~L~~L~L 783 (876)
T 4ecn_A 729 LLTTIDLRFNKLTSLSD--DFRATTLPYLSNM--DVSYNCFSSFPT----QPLNSSQLKAFGI 783 (876)
T ss_dssp GCCEEECCSSCCCCCCG--GGSTTTCTTCCEE--ECCSSCCSSCCC----GGGGCTTCCEEEC
T ss_pred CccEEECCCCCCccchH--HhhhccCCCcCEE--EeCCCCCCccch----hhhcCCCCCEEEC
Confidence 45555555555543322 1110025666666 466666655332 2345566666543
No 138
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=94.14 E-value=0.022 Score=47.57 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=8.8
Q ss_pred ccccEEEeeCCCccchh
Q psy4164 40 NSLRTLSLYGNPIEKIR 56 (147)
Q Consensus 40 ~~L~~L~L~~N~I~~~~ 56 (147)
++|++|++++|+|+.+.
T Consensus 131 ~~L~~L~L~~n~l~~lp 147 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP 147 (454)
T ss_dssp TTCCEEECCSSCCSSCC
T ss_pred CCCCEEECcCCCCCCCc
Confidence 35555555555555443
No 139
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=93.95 E-value=0.0089 Score=47.81 Aligned_cols=19 Identities=11% Similarity=0.244 Sum_probs=16.0
Q ss_pred hhccccccEEEeeCCCccc
Q psy4164 36 LRRVNSLRTLSLYGNPIEK 54 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~ 54 (147)
+..+++|+.|+|++|+|..
T Consensus 50 f~~l~~L~~L~Ls~N~i~~ 68 (350)
T 4ay9_X 50 FSGFGDLEKIEISQNDVLE 68 (350)
T ss_dssp STTCTTCCEEEEECCTTCC
T ss_pred HcCCCCCCEEECcCCCCCC
Confidence 5678999999999999854
No 140
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=93.95 E-value=0.025 Score=47.20 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=6.6
Q ss_pred ccccccEEEeeCCCcc
Q psy4164 38 RVNSLRTLSLYGNPIE 53 (147)
Q Consensus 38 ~l~~L~~L~L~~N~I~ 53 (147)
.+++|+.|++++|+|+
T Consensus 193 ~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 193 NLPFLTAIYADNNSLK 208 (454)
T ss_dssp TCTTCCEEECCSSCCS
T ss_pred CCCCCCEEECCCCcCC
Confidence 3344444444444443
No 141
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=93.89 E-value=0.019 Score=51.39 Aligned_cols=63 Identities=22% Similarity=0.196 Sum_probs=39.7
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCCCCccccC
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDS 103 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp~L~~LD~ 103 (147)
.+..+++|++|+|++|.|..+.. ..+.. +++|++| .+.+|.+....- ....+..+++|+.||-
T Consensus 68 ~f~~L~~L~~L~Ls~N~l~~~~p-~~~~~--l~~L~~L--~Ls~n~l~~~~~-~~~~~~~L~~L~~L~L 130 (844)
T 3j0a_A 68 AFRNLPNLRILDLGSSKIYFLHP-DAFQG--LFHLFEL--RLYFCGLSDAVL-KDGYFRNLKALTRLDL 130 (844)
T ss_dssp TTSSCTTCCEEECTTCCCCEECT-TSSCS--CSSCCCE--ECTTCCCSSCCS-TTCCCSSCSSCCEEEE
T ss_pred HhcCCCCCCEEECCCCcCcccCH-hHccC--CcccCEe--eCcCCCCCcccc-cCccccccCCCCEEEC
Confidence 35677777777777777776521 12333 6888888 588887765210 0113567888888874
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.85 E-value=0.049 Score=39.90 Aligned_cols=72 Identities=13% Similarity=0.004 Sum_probs=47.7
Q ss_pred hhhccccccEEEeeCCCccchhh--h-hhhhhccCccccccccccccCcccCcc-cHHHHHHHHCCCCccccC----ccc
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIRE--Y-RAVVSTMIPQLVTLDSVLYGNPIEKIR-EYRAVVSTMIPQLVTLDS----VFI 106 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~--l-~~L~~~~lp~L~~Ld~~l~gNPv~~~~-~YR~~vi~~lp~L~~LD~----~~V 106 (147)
.+...++|+.|+|++|+|.+... + +.+.. .++|++| .+.+|.+.... ..=...+...++|+.||- ..|
T Consensus 60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~--n~~L~~L--~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV--NNTLKSL--NVESNFISGSGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHH--CSSCCEE--ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred HHHhCCCcCEEECcCCCCChHHHHHHHHHHHh--CCCcCEE--ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 35667889999999999987432 2 12332 5789999 69999887642 112234555678998886 466
Q ss_pred CHHH
Q psy4164 107 LPSE 110 (147)
Q Consensus 107 t~~e 110 (147)
+++-
T Consensus 136 ~~~g 139 (185)
T 1io0_A 136 GNNV 139 (185)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6554
No 143
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=93.78 E-value=0.028 Score=49.71 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=7.4
Q ss_pred hccccccEEEeeCCCcc
Q psy4164 37 RRVNSLRTLSLYGNPIE 53 (147)
Q Consensus 37 ~~l~~L~~L~L~~N~I~ 53 (147)
..+++|+.|++++|.|.
T Consensus 175 ~~l~~L~~L~Ls~n~l~ 191 (768)
T 3rgz_A 175 DGCGELKHLAISGNKIS 191 (768)
T ss_dssp TCCTTCCEEECCSSEEE
T ss_pred ccCCCCCEEECCCCccc
Confidence 33444444444444443
No 144
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=93.77 E-value=0.055 Score=43.26 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=46.9
Q ss_pred hhhccc-cccEEEeeCCCccch--hhhhhhhhccCccccccccccccCcccCcc-cHHHHHHHHC-CCCccccCcc
Q psy4164 35 VLRRVN-SLRTLSLYGNPIEKI--REYRAVVSTMIPQLVTLDSVLYGNPIEKIR-EYRAVVSTMI-PQLVTLDSVF 105 (147)
Q Consensus 35 ~L~~l~-~L~~L~L~~N~I~~~--~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~-~YR~~vi~~l-p~L~~LD~~~ 105 (147)
.+..++ +|+.|+|++|+|++. ..+..+-...+++|++| .+.+|.+.... ..-...+..+ ++|+.||-..
T Consensus 45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L--~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 118 (362)
T 3goz_A 45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSL--NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW 118 (362)
T ss_dssp HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEE--ECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEE--ECcCCcCChHHHHHHHHHHHhCCCCccEEECcC
Confidence 456777 899999999999874 33433322113899999 69999988653 2223344455 8999988654
No 145
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=93.75 E-value=0.031 Score=45.51 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=46.6
Q ss_pred hhccccccEEEeeCCCccchh--hhhh-hhhccCccccccccccccCcccCcccHHHHHHHHCC----CCccccCcc
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIR--EYRA-VVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIP----QLVTLDSVF 105 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~--~l~~-L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp----~L~~LD~~~ 105 (147)
+..+++|+.|+|++|.|++.. .+.. +.. +++|++| .+.+|.+.+.. -..+...++ +|+.||-..
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~--~~~L~~L--~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~L~~ 94 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRV--NPALAEL--NLRSNELGDVG--VHCVLQGLQTPSCKIQKLSLQN 94 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHT--CTTCCEE--ECTTCCCHHHH--HHHHHHTTCSTTCCCCEEECTT
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHh--CCCcCEE--eCCCCcCChHH--HHHHHHHHhhCCCceeEEEccC
Confidence 678999999999999998653 3332 433 7999999 59999887532 234555566 799988654
No 146
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=93.69 E-value=0.02 Score=49.80 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=11.2
Q ss_pred ccccccccccccCcccCccc
Q psy4164 67 PQLVTLDSVLYGNPIEKIRE 86 (147)
Q Consensus 67 p~L~~Ld~~l~gNPv~~~~~ 86 (147)
++|+.| .+.+|.+...+.
T Consensus 180 ~~L~~L--~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 180 ESLEAL--DVSTNLLESLPA 197 (571)
T ss_dssp TTCCEE--ECCSSCCSSCCC
T ss_pred CCCCEE--ECcCCCCCchhh
Confidence 566777 477777665443
No 147
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=93.61 E-value=0.035 Score=48.16 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=42.4
Q ss_pred hhhccccccEEEeeCCCccc------------------hhhhhhhhhccCccccccccccccCcccCcccHHHHHHHHCC
Q psy4164 35 VLRRVNSLRTLSLYGNPIEK------------------IREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIP 96 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~------------------~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~lp 96 (147)
.+..+++|++|+|++|.|+. +.. .+....+++|++| .+.+|.+...-- ..+..++
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~--~l~~~~l~~L~~L--~L~~n~l~~~~p---~~l~~l~ 273 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE--DLKWDNLKDLTDV--EVYNCPNLTKLP---TFLKALP 273 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEE--EEECCTTCSSCC---TTTTTCS
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCch--hhhhcccCCCCEE--EecCCcCCccCh---HHHhcCC
Confidence 47788999999999999987 322 2220027888888 588887654311 2456778
Q ss_pred CCccccCc
Q psy4164 97 QLVTLDSV 104 (147)
Q Consensus 97 ~L~~LD~~ 104 (147)
+|+.||-.
T Consensus 274 ~L~~L~Ls 281 (636)
T 4eco_A 274 EMQLINVA 281 (636)
T ss_dssp SCCEEECT
T ss_pred CCCEEECc
Confidence 88887754
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=91.40 E-value=0.07 Score=43.70 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=32.9
Q ss_pred ccccccEEEeeCCCccchhhhhhhhh-ccCccccccccccccCcccCccc-HHHHHHHHCCCCccccC--cccCHH
Q psy4164 38 RVNSLRTLSLYGNPIEKIREYRAVVS-TMIPQLVTLDSVLYGNPIEKIRE-YRAVVSTMIPQLVTLDS--VFILPS 109 (147)
Q Consensus 38 ~l~~L~~L~L~~N~I~~~~~l~~L~~-~~lp~L~~Ld~~l~gNPv~~~~~-YR~~vi~~lp~L~~LD~--~~Vt~~ 109 (147)
.||+|+.|+|++|.|.+... ..+.. ..+|+|++| .+..|-+.+..- .-..-+..+|+|+.||- ..|+++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~-~~la~a~~~~~L~~L--dLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVV-EMFLESDILPQLETM--DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHH-HHHHHCSSGGGCSEE--ECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCCCcCEEeCCCCCCchHHH-HHHHhCccCCCCCEE--ECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 35666666666666654211 11111 125667777 356665544210 00111245677777663 445543
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=91.21 E-value=0.043 Score=45.01 Aligned_cols=43 Identities=14% Similarity=0.069 Sum_probs=32.9
Q ss_pred ccccccEEEeeCCCccchh--hh-hhhhhccCccccccccccccCcccCc
Q psy4164 38 RVNSLRTLSLYGNPIEKIR--EY-RAVVSTMIPQLVTLDSVLYGNPIEKI 84 (147)
Q Consensus 38 ~l~~L~~L~L~~N~I~~~~--~l-~~L~~~~lp~L~~Ld~~l~gNPv~~~ 84 (147)
.+++|++|+|+.|.|.+.. .+ ..+.. +++|+.| .+..|++.+.
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~--l~~L~~L--~L~~n~i~d~ 322 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDK--IKHLKFI--NMKYNYLSDE 322 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHH--HTTCSEE--ECCSBBCCHH
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhccc--CCcceEE--ECCCCcCCHH
Confidence 6899999999999998853 22 22333 7999999 5899988754
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=89.90 E-value=0.25 Score=40.24 Aligned_cols=70 Identities=19% Similarity=0.005 Sum_probs=48.1
Q ss_pred hhccccccEEEeeCCCccchhh--h-hhhhhccCccccccccccccCcccCcc-cHHHHHHHHCCCCccccC--cccCHH
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIRE--Y-RAVVSTMIPQLVTLDSVLYGNPIEKIR-EYRAVVSTMIPQLVTLDS--VFILPS 109 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~--l-~~L~~~~lp~L~~Ld~~l~gNPv~~~~-~YR~~vi~~lp~L~~LD~--~~Vt~~ 109 (147)
+..+++|++|+|++|.|.+... + ..+.. .++|+.| .+.+|.+.... ..-...+...|+|+.||- -.|++.
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~--~~~L~~L--~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDR--NRQLQEL--NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGG--CSCCCEE--ECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc--CCCcCeE--ECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 4678999999999999987432 2 22333 6899999 69999987643 223344556788888773 455543
No 151
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=87.80 E-value=0.25 Score=39.23 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=29.8
Q ss_pred cccccEEEeeCCCccchhhhhhhhhccCccccccccccccCcccC
Q psy4164 39 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEK 83 (147)
Q Consensus 39 l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gNPv~~ 83 (147)
.++++.|+|++|+|+.+.. ..+.. +++|++| .+.+|.+.+
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~-~~f~~--l~~L~~L--~Ls~N~i~~ 68 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQK-GAFSG--FGDLEKI--EISQNDVLE 68 (350)
T ss_dssp CTTCSEEEEESCCCSEECT-TSSTT--CTTCCEE--EEECCTTCC
T ss_pred CCCCCEEEccCCcCCCcCH-HHHcC--CCCCCEE--ECcCCCCCC
Confidence 3689999999999998753 12433 7888888 588887643
No 152
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=86.00 E-value=0.23 Score=36.75 Aligned_cols=32 Identities=47% Similarity=0.852 Sum_probs=25.8
Q ss_pred CCcccccccccccchhhccccccceEEEeecc
Q psy4164 1 MSYMLGHLHNGWQVDQAILSEEDRVVIEEYLS 32 (147)
Q Consensus 1 ~~~~l~~L~~~~~v~~~i~~~~~~l~~lr~~~ 32 (147)
||+|++++.+.+..++.+..+.+++++++|..
T Consensus 19 ~s~mv~~l~t~~~f~~~v~~~~~k~VVVdF~A 50 (160)
T 2av4_A 19 SSFMLQHLNSGWAVDQAIVNEDERLVCIRFGH 50 (160)
T ss_dssp ---CCEECCSHHHHHHHHHHCSSSEEEEEEEC
T ss_pred hhhhhhccCCHHHHHHHHHhcCCCEEEEEEEC
Confidence 59999999999999999986558999999875
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=80.25 E-value=0.51 Score=37.00 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=24.7
Q ss_pred cccccEEEeeCCCccchhhhhhhhhccCccccccccccccC
Q psy4164 39 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGN 79 (147)
Q Consensus 39 l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~Ld~~l~gN 79 (147)
+++|+.|+|++|+|+.+..- .+.. +++|+.| .+..|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~-aF~~--~~~L~~l--~l~~n 260 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDF-TFAQ--KKYLLKI--KLPHN 260 (329)
T ss_dssp CTTCCEEECTTBCCCEECTT-TTTT--CTTCCEE--ECCTT
T ss_pred cCCCeEEECCCCCcceecHh-hhhC--CCCCCEE--ECCcc
Confidence 78899999998888887653 2322 5667666 45555
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=67.88 E-value=1.8 Score=33.72 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=14.4
Q ss_pred hhccccccEEEeeCCCccchhh
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIRE 57 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~ 57 (147)
+..|++|+.|+|.+| |..+..
T Consensus 246 F~~~~~L~~l~l~~n-i~~I~~ 266 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN-LKTIGQ 266 (329)
T ss_dssp TTTCTTCCEEECCTT-CCEECT
T ss_pred hhCCCCCCEEECCcc-cceehH
Confidence 566778888888777 655443
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=66.71 E-value=17 Score=27.21 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=12.4
Q ss_pred HHHHHCCCCccccCcccCHHHH
Q psy4164 90 VVSTMIPQLVTLDSVFILPSEK 111 (147)
Q Consensus 90 ~vi~~lp~L~~LD~~~Vt~~eR 111 (147)
.++..=++|+.||-..-....|
T Consensus 151 ~aL~~N~tL~~L~l~~~~~g~~ 172 (197)
T 1pgv_A 151 MAIEENESLLRVGISFASMEAR 172 (197)
T ss_dssp HHHHHCSSCCEEECCCCCHHHH
T ss_pred HHHHhCCCcCeEeccCCCccHH
Confidence 3455556777766655444444
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=60.95 E-value=7.5 Score=29.15 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=41.7
Q ss_pred hhhccccccEEEeeCCCccchhhhhhhhhc--cCccccccccccccCcccCcccHHHHHHHHC---CCCccccC
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVST--MIPQLVTLDSVLYGNPIEKIREYRAVVSTMI---PQLVTLDS 103 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~l~~L~~~--~lp~L~~Ld~~l~gNPv~~~~~YR~~vi~~l---p~L~~LD~ 103 (147)
.|..-..|+.|+|++|+|.+..- ..+... .=+.|++| .|..|.+....- ..+...| +.|+.|+-
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga-~alA~aL~~N~tL~~L--~L~~N~Ig~~Ga--~ala~aL~~N~tL~~L~L 133 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEA-RGLIELIETSPSLRVL--NVESNFLTPELL--ARLLRSTLVTQSIVEFKA 133 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHH-TTHHHHHHHCSSCCEE--ECCSSBCCHHHH--HHHHHHTTTTCCCSEEEC
T ss_pred HHhhCCCcCEEEccCCCCChHHH-HHHHHHHhcCCccCeE--ecCCCcCCHHHH--HHHHHHHhhCCceeEEEC
Confidence 36667789999999999987532 222210 13789999 699999876431 2333344 46888875
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=54.57 E-value=7.3 Score=26.73 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.5
Q ss_pred hhhccccccEEEeeCCCcc
Q psy4164 35 VLRRVNSLRTLSLYGNPIE 53 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~ 53 (147)
.+..+++|+.|+|++|++.
T Consensus 50 ~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 50 LLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TGGGCTTCCEEECCSSCCB
T ss_pred hhhhccccCEEEecCCCee
Confidence 3578899999999999984
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=35.58 E-value=13 Score=30.31 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=18.5
Q ss_pred hhhccccccEEEeeCCCccchhh
Q psy4164 35 VLRRVNSLRTLSLYGNPIEKIRE 57 (147)
Q Consensus 35 ~L~~l~~L~~L~L~~N~I~~~~~ 57 (147)
.+..|++|+.++|.+|+|+.+..
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~ 197 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPA 197 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECT
T ss_pred HhhCcccCCeeecCCCcceEech
Confidence 36678899999999998887654
No 159
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=27.21 E-value=27 Score=23.70 Aligned_cols=31 Identities=81% Similarity=1.209 Sum_probs=23.4
Q ss_pred CCcccccccccccchhhccccccceEEEeec
Q psy4164 1 MSYMLGHLHNGWQVDQAILSEEDRVVIEEYL 31 (147)
Q Consensus 1 ~~~~l~~L~~~~~v~~~i~~~~~~l~~lr~~ 31 (147)
||++++.+.+...++..+....++.+.+-|-
T Consensus 1 Ms~~l~~i~~~~~~~~~v~~~~~k~vlv~F~ 31 (142)
T 1qgv_A 1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFG 31 (142)
T ss_dssp -CCSSCBCCSHHHHHHHHHTCSSSEEEEEEE
T ss_pred CchHHhccCCHHHHHHHHHhcCCCEEEEEEE
Confidence 8999999999999998887633677766654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=26.78 E-value=27 Score=27.26 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=21.3
Q ss_pred hhccccccEEEeeCCCccchhhhhhhhhccCcccccc
Q psy4164 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL 72 (147)
Q Consensus 36 L~~l~~L~~L~L~~N~I~~~~~l~~L~~~~lp~L~~L 72 (147)
+..|.+|+.+.+.+|.|+.+.+-. +.. +.+|+.+
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~a-F~~--c~~L~~i 315 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRV-FMD--CVKLSSV 315 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTT-TTT--CTTCCEE
T ss_pred cccccccccccccccccceehhhh-hcC--CCCCCEE
Confidence 456778888888877777765431 222 5566666
No 161
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=26.13 E-value=24 Score=24.26 Aligned_cols=31 Identities=32% Similarity=0.437 Sum_probs=24.3
Q ss_pred CCcccccccccccchhhccccccceEEEeec
Q psy4164 1 MSYMLGHLHNGWQVDQAILSEEDRVVIEEYL 31 (147)
Q Consensus 1 ~~~~l~~L~~~~~v~~~i~~~~~~l~~lr~~ 31 (147)
+|+|++.+.+...++..+.....+.+.+.|-
T Consensus 1 gs~~l~~i~~~~~~~~~i~~~~~k~vlv~F~ 31 (149)
T 3gix_A 1 GSFLLPKLTSKKEVDQAIKSTAEKVLVLRFG 31 (149)
T ss_dssp -CCSCCEECSHHHHHHHHHHCCSSEEEEEEE
T ss_pred CCcceeecCCHHHHHHHHHhcCCCEEEEEEE
Confidence 5899999999999999997444777777664
Done!