RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4164
(147 letters)
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription;
1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Length = 142
Score = 56.6 bits (136), Expect = 3e-11
Identities = 25/27 (92%), Positives = 26/27 (96%)
Query: 1 MSYMLGHLHNGWQVDQAILSEEDRVVI 27
MSYML HLHNGWQVDQAILSEEDRVV+
Sbjct: 1 MSYMLPHLHNGWQVDQAILSEEDRVVV 27
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote
structural genomics, structural genomics consortium,
SGC, U function; 1.73A {Plasmodium yoelii}
Length = 160
Score = 54.8 bits (131), Expect = 2e-10
Identities = 15/27 (55%), Positives = 23/27 (85%)
Query: 1 MSYMLGHLHNGWQVDQAILSEEDRVVI 27
S+ML HL++GW VDQAI++E++R+V
Sbjct: 19 SSFMLQHLNSGWAVDQAIVNEDERLVC 45
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 51.3 bits (123), Expect = 4e-09
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100
+L L+L GN ++ I + + L +LD L+ + + +YR V ++PQL
Sbjct: 96 NLTHLNLSGNKLKDISTLEPLKK--LECLKSLD--LFNCEVTNLNDYRESVFKLLPQLTY 151
Query: 101 LDSVFILPSEKQETNA 116
LD E +++A
Sbjct: 152 LDGYDREDQEAPDSDA 167
Score = 47.8 bits (114), Expect = 7e-08
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 27 IEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 73
+++ ++ L+++ L++L L+ + + +YR V ++PQL LD
Sbjct: 107 LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 50.8 bits (122), Expect = 6e-09
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100
L L L N + ++ + + S + L L + NP+ + YR V +PQ+
Sbjct: 89 DLTELILTNNSLVELGDLDPLAS--LKSLTYLC--ILRNPVTNKKHYRLYVIYKVPQVRV 144
Query: 101 LDSVFILPSEKQETNAL 117
LD + E+QE +
Sbjct: 145 LDFQKVKLKERQEAEKM 161
Score = 47.0 bits (112), Expect = 2e-07
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 27 IEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 73
+ E + L + SL L + NP+ + YR V +PQ+ LD
Sbjct: 100 LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
Score = 28.5 bits (64), Expect = 0.59
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 6/45 (13%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIR 85
R L L G I I + + Q +D N I K+
Sbjct: 20 RDRELDLRGYKIPVIEN----LGATLDQFDAID--FSDNEIRKLD 58
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 48.9 bits (117), Expect = 2e-08
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 27 IEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV 75
I++ ++ L+++ +L++L L+ + + +YR V ++PQL LD
Sbjct: 100 IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148
Score = 47.4 bits (113), Expect = 1e-07
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100
+L L+L GN I+ + + + L +LD L+ + + +YR V ++PQL
Sbjct: 89 NLTHLNLSGNKIKDLSTIEPLKK--LENLKSLD--LFNCEVTNLNDYRENVFKLLPQLTY 144
Query: 101 LDSV 104
LD
Sbjct: 145 LDGY 148
Score = 28.5 bits (64), Expect = 0.56
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100
L LS + I A + + +L L+ L N + E V++ P L
Sbjct: 43 ELEFLSTINVGLTSI----ANLPKL-NKLKKLE--LSDNRVSGGLE---VLAEKCPNLTH 92
Query: 101 LD 102
L+
Sbjct: 93 LN 94
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 49.7 bits (119), Expect = 3e-08
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIR-------EYR 88
+ ++ +LR L + N I E + + + +L L L GNP+ EYR
Sbjct: 111 IEKLVNLRVLYMSNNKITNWGEIDKLAA--LDKLEDLL--LAGNPLYNDYKENNATSEYR 166
Query: 89 AVVSTMIPQLVTLDSVFILPSEKQETNAL 117
V +P L LD + + E+++ N
Sbjct: 167 IEVVKRLPNLKKLDGMPVDVDEREQANVA 195
Score = 27.7 bits (62), Expect = 1.1
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 16/76 (21%)
Query: 27 IEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
++ LS + + L+L N IEKI + L L L N I+KI
Sbjct: 40 MDATLSTLK-----ACKHLALSTNNIEKISSLS-----GMENLRILS--LGRNLIKKIEN 87
Query: 87 YRAVVSTMIPQLVTLD 102
+ + L L
Sbjct: 88 ----LDAVADTLEELW 99
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo
sapiens} PDB: 1xbs_A
Length = 149
Score = 47.7 bits (113), Expect = 9e-08
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 2 SYMLGHLHNGWQVDQAILSEEDRVVI 27
S++L L + +VDQAI S ++V++
Sbjct: 2 SFLLPKLTSKKEVDQAIKSTAEKVLV 27
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 44.7 bits (105), Expect = 3e-06
Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMI 95
+ + L+ L L N +++ + +VS P+LV L+ L GN + + + ++ M+
Sbjct: 504 VANLPRLQELLLCNNRLQQSAAIQPLVS--CPRLVLLN--LQGNSLCQEEGIQERLAEML 559
Query: 96 PQLVTLDS 103
P + ++ +
Sbjct: 560 PSVSSILT 567
Score = 42.8 bits (100), Expect = 1e-05
Identities = 8/48 (16%), Positives = 24/48 (50%)
Query: 27 IEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDS 74
+++ ++ L L L+L GN + + + ++ M+P + ++ +
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 38.8 bits (90), Expect = 3e-04
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI----REYRAVVSTMIP 96
+L+ L+L GN ++ RE + +L L L GN + Y + + P
Sbjct: 197 NLKILNLSGNELKSERELDKIKG---LKLEELW--LDGNSLCDTFRDQSTYISAIRERFP 251
Query: 97 QLVTLDSVFILPS 109
+L+ LD + P
Sbjct: 252 KLLRLDGHELPPP 264
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 37.0 bits (86), Expect = 9e-04
Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 7/105 (6%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMI 95
L + L+ L L N I +R ++ + L L+ L+ +
Sbjct: 174 LAGLTKLQNLYLSKNHISDLRA----LAGL-KNLDVLE--LFSQECLNKPINHQSNLVVP 226
Query: 96 PQLVTLDSVFILPSEKQETNALNAEIRSYLLPKYEKLEAATFKRT 140
+ D + P + + LP++ + F +
Sbjct: 227 NTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQP 271
Score = 26.9 bits (60), Expect = 2.8
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+NS+ + + I+ ++ +P + L L GN + I
Sbjct: 42 QNELNSIDQIIANNSDIKSVQGI-----QYLPNVTKLF--LNGNKLTDI 83
Score = 26.6 bits (59), Expect = 2.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L+ + L++LSL N I I + + PQL +L L N I I
Sbjct: 108 LKDLKKLKSLSLEHNGISDI----NGLVHL-PQLESLY--LGNNKITDI 149
Score = 25.4 bits (56), Expect = 8.0
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 32 SVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+ L + +L L L N ++ + + +L +L L N I I
Sbjct: 82 DIKPLANLKNLGWLFLDENKVKDL-----SSLKDLKKLKSLS--LEHNGISDI 127
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 37.0 bits (86), Expect = 0.001
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 30 YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRA 89
+ + + SL L L N + + + P L TL L N + +++
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV--LSQNHLRSMQKTGE 381
Query: 90 VVSTMIPQLVTLD 102
++ T+ L +LD
Sbjct: 382 ILLTL-KNLTSLD 393
Score = 32.4 bits (74), Expect = 0.042
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTM 94
V + ++ +++ + + + S + L LD L N + + +
Sbjct: 305 VYSLLEKVKRITVENSKVFLV---PCSFSQHLKSLEFLD--LSENLMVEEYLKNSACKGA 359
Query: 95 IPQLVTLD 102
P L TL
Sbjct: 360 WPSLQTLV 367
Score = 28.9 bits (65), Expect = 0.70
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAV 90
LS ++SL+ L+L GNP + + ++ + L TL + E R +
Sbjct: 89 LSSSWFGPLSSLKYLNLMGNPYQTL-GVTSLFPNL-TNLQTLR--IGNVE--TFSEIRRI 142
Query: 91 VSTMIPQLVTLD 102
+ L L+
Sbjct: 143 DFAGLTSLNELE 154
Score = 28.5 bits (64), Expect = 0.72
Identities = 6/46 (13%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
L+ L + N ++ + + +++ P L+ + + N ++ + +
Sbjct: 452 RLQELYISRNKLKTLPD-----ASLFPVLLVMK--ISRNQLKSVPD 490
Score = 27.4 bits (61), Expect = 1.8
Identities = 6/42 (14%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPI 81
L + + N ++ + + + + L + L+ NP
Sbjct: 473 PVLLVMKISRNQLKSVPD--GIFDRL-TSLQKIW--LHTNPW 509
Score = 27.0 bits (60), Expect = 2.4
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
++++L L N I I L L L + I I
Sbjct: 27 AMKSLDLSFNKITYIGHG---DLRACANLQVLI--LKSSRINTI 65
Score = 26.6 bits (59), Expect = 3.5
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
LR +L+ L L + I I E A S L LD L N + +
Sbjct: 45 DLRACANLQVLILKSSRINTI-EGDAFYSL--GSLEHLD--LSDNHLSSL 89
Score = 26.6 bits (59), Expect = 4.1
Identities = 6/54 (11%), Positives = 15/54 (27%), Gaps = 5/54 (9%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+ + SL L + + + I + L L+ + +
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQ---SLKSIRDIHHLT--LHLSESAFL 187
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 35.9 bits (83), Expect = 0.002
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
EY+S + +L+ L+L I+ + + L L+ + GN +IR
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPL-----VGLEELE--MSGNHFPEIRP 235
Score = 34.3 bits (79), Expect = 0.010
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L + L L + GN +IR + L L + + + I
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPG--SFHGL-SSLKKLW--VMNSQVSLI 257
Score = 29.3 bits (66), Expect = 0.47
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
+ ++SL+ L + + + I + LV L+ L N + +
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIER--NAFDGL-ASLVELN--LAHNNLSSLPH 283
Score = 27.8 bits (62), Expect = 1.4
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
R ++ L L L N I +I + L TL+ L+ N + I
Sbjct: 95 FRHLHHLEVLQLGRNSIRQIEVG---AFNGLASLNTLE--LFDNWLTVIPS 140
Score = 27.4 bits (61), Expect = 2.1
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 30 YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREY 87
+ V + SL TL L+ N + I A +L L L NPIE I Y
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPS-GAFEYL--SKLRELW--LRNNPIESIPSY 165
Score = 25.9 bits (57), Expect = 6.6
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
+ R L+L N I+ I+ + L L L N I +I
Sbjct: 76 NTRYLNLMENNIQMIQA--DTFRHL-HHLEVLQ--LGRNSIRQIEV 116
Score = 25.5 bits (56), Expect = 9.0
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
LR L L NPIE I Y +P L+ LD + +E I
Sbjct: 148 KLRELWLRNNPIESIPSY---AFNRVPSLMRLD-LGELKKLEYI 187
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 35.1 bits (80), Expect = 0.005
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 7/94 (7%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMI 95
L + L+ L L N I +R + L L+ L+ +
Sbjct: 171 LAGLTKLQNLYLSKNHISDLRA-----LAGLKNLDVLE--LFSQECLNKPINHQSNLVVP 223
Query: 96 PQLVTLDSVFILPSEKQETNALNAEIRSYLLPKY 129
+ D + P + + LP++
Sbjct: 224 NTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEF 257
Score = 27.8 bits (61), Expect = 1.5
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+NS+ + + I+ ++ + + P + L L GN + I
Sbjct: 39 QNELNSIDQIIANNSDIKSVQG----IQYL-PNVTKLF--LNGNKLTDI 80
Score = 27.8 bits (61), Expect = 1.6
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L+ + L++LSL N I I + + PQL +L L N I I
Sbjct: 105 LKDLKKLKSLSLEHNGISDI----NGLVHL-PQLESLY--LGNNKITDI 146
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 34.7 bits (80), Expect = 0.006
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
Y+S +++LR L+L + +I + +L LD L GN + IR
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL-----IKLDELD--LSGNHLSAIRP 224
Score = 34.0 bits (78), Expect = 0.012
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L + L L L GN + IR + L L + + I+ I
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRP--GSFQGL-MHLQKLW--MIQSQIQVI 246
Score = 28.2 bits (63), Expect = 0.92
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
+ V + + L L L N I I + L TL+ L+ N + I
Sbjct: 79 IKVNSFKHLRHLEILQLSRNHIRTIEIG---AFNGLANLNTLE--LFDNRLTTIPN 129
Score = 28.2 bits (63), Expect = 0.96
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
+ + + L+ L + + I+ I + LV ++ L N + +
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIER--NAFDNL-QSLVEIN--LAHNNLTLLPH 272
Score = 25.5 bits (56), Expect = 8.4
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
+ R L+L+ N I+ I+ + L L L N I I
Sbjct: 65 NTRLLNLHENQIQIIKV--NSFKHL-RHLEILQ--LSRNHIRTIEI 105
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 33.9 bits (78), Expect = 0.011
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
+R + LR L+L NPI I + + +L + L G + +
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGS---MLHELLRLQEIQ--LVGGQLAVVEP 289
Score = 32.4 bits (74), Expect = 0.038
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
+L +LS+ + + AV L L+ L NPI I
Sbjct: 225 NLTSLSITHCNLTAVPY-LAVRHL--VYLRFLN--LSYNPISTIEG 265
Score = 31.6 bits (72), Expect = 0.071
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPI 81
+ + R +N LR L++ GN + + E +V ++ L TL L NP+
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEE--SVFHSV-GNLETLI--LDSNPL 332
Score = 28.9 bits (65), Expect = 0.55
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L ++ + + +L++L + N + I S + L L L + I
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISH--RAFSGL-NSLEQLT--LEKCNLTSI 167
Score = 27.4 bits (61), Expect = 2.0
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
+ + +LRTL L N ++ I V T + L LD + N I + +
Sbjct: 69 SAVEPGAFNNLFNLRTLGLRSNRLKLIPLG---VFTGLSNLTKLD--ISENKIVILLD 121
Score = 27.4 bits (61), Expect = 2.0
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPI 81
+ L ++ L L L I IR+Y + +L L+ + P
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDY---SFKRLYRLKVLE--ISHWPY 212
Score = 26.6 bits (59), Expect = 4.1
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
R L L N I+ + + ++ P L L+ L N + +
Sbjct: 33 ETRLLDLGKNRIKTLNQ--DEFASF-PHLEELE--LNENIVSAV 71
Score = 26.6 bits (59), Expect = 4.2
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
L+ L L L N + + E A + L TL L N ++ I
Sbjct: 47 LNQDEFASFPHLEELELNENIVSAV-EPGAFNNL--FNLRTLG--LRSNRLKLIPL 97
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 33.4 bits (77), Expect = 0.017
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREY---RAVVSTMIPQLVTLDSVLYGNPIE 82
L ++ + L+ N I I +T + L+ NP++
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS--LFSNPVQ 306
Score = 32.7 bits (75), Expect = 0.033
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 9/75 (12%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREY--- 87
+ L LR L L N + K+ + + + L+ N I I
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVKVPG--GLAD--HKYIQVVY--LHNNNISAIGSNDFC 284
Query: 88 RAVVSTMIPQLVTLD 102
+T +
Sbjct: 285 PPGYNTKKASYSGVS 299
Score = 29.6 bits (67), Expect = 0.36
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L+ +N+L L L N I + P L L L N + K+
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNG---SLANTPHLRELH--LNNNKLVKV 255
Score = 29.2 bits (66), Expect = 0.49
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 8/60 (13%)
Query: 28 EEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREY 87
+ + + L + + I I + P L L L GN I K+
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIP------QGLPPSLTELH--LDGNKITKVDAA 210
Score = 29.2 bits (66), Expect = 0.52
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
SL L L GN I K+ + L L L N I +
Sbjct: 193 SLTELHLDGNKITKVDAA---SLKGLNNLAKLG--LSFNSISAV 231
Score = 27.7 bits (62), Expect = 1.5
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIE 82
+L+ L ++ N I K+R+ V + Q++ ++ L NP++
Sbjct: 122 TLQELRVHENEITKVRKS---VFNGLNQMIVVE--LGTNPLK 158
Score = 27.3 bits (61), Expect = 1.8
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREY 87
L L L N ++++ M L L ++ N I K+R+
Sbjct: 101 KLERLYLSKNQLKELP------EKMPKTLQELR--VHENEITKVRKS 139
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 32.9 bits (75), Expect = 0.025
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
+ + +L L LY N I + + QL L L N I +
Sbjct: 107 LFSDLQALEVLLLYNNHIVVVDRN---AFEDMAQLQKLY--LSQNQISRFPV 153
Score = 30.6 bits (69), Expect = 0.16
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
++S V +LR L L N + + E+ + + + L L LY N I +
Sbjct: 77 NFISSEAFVPVPNLRYLDLSSNHLHTLDEF---LFSDLQALEVLL--LYNNHIVVVDR 129
Score = 30.6 bits (69), Expect = 0.18
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 34 FVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
+ R+ +L +L L N + I A V +P L LD L N + + E
Sbjct: 58 WTPTRLTNLHSLLLSHNHLNFI-SSEAFVP--VPNLRYLD--LSSNHLHTLDE 105
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 32.7 bits (75), Expect = 0.029
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 30 YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPI 81
L F + +NSL+ L N I ++ + L L+ L N
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKK--QELQHFPSSLAFLN--LTQNDF 260
Score = 31.5 bits (72), Expect = 0.062
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
E + + +L L L +E++ + L L+ + N +
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPT---AFNSLSSLQVLN--MSHNNFFSL 214
Score = 30.4 bits (69), Expect = 0.19
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 7/74 (9%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYR 88
+ ++SL L + GN + + T + L LD L +E++
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSF--QENFLPDIFTELRNLTFLD--LSQCQLEQLSPT- 193
Query: 89 AVVSTMIPQLVTLD 102
+ L L+
Sbjct: 194 --AFNSLSSLQVLN 205
Score = 29.6 bits (67), Expect = 0.34
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
L L + ++++ E+ +S + L+ LD +
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLS--LRNLIYLD--ISHTHTRVAFN 143
Score = 27.3 bits (61), Expect = 2.0
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
L V ++ L LSL N + + L LD L N + +
Sbjct: 43 LPHGVFDKLTQLTKLSLSSNGLSFK-GCCSQSDFGTTSLKYLD--LSFNGVITMSS 95
Score = 26.5 bits (59), Expect = 3.8
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100
S L L N ++ + V + QL L L N + + L
Sbjct: 29 SATRLELESNKLQSLPHG---VFDKLTQLTKLS--LSSNGLSFK-GCCSQSDFGTTSLKY 82
Query: 101 LD 102
LD
Sbjct: 83 LD 84
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 32.4 bits (74), Expect = 0.043
Identities = 7/58 (12%), Positives = 16/58 (27%), Gaps = 5/58 (8%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
+ + L L + + ++ Y I + L L+ + E
Sbjct: 163 TKIQRKDFAGLTFLEELEIDAS---DLQSYEPKSLKSIQNVSHLI--LHMKQHILLLE 215
Score = 28.2 bits (63), Expect = 1.1
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNP 80
+L +++ L L N ++ + + + L + L+ NP
Sbjct: 272 LLNQISGLLELEFSRNQLKSV--PDGIFDRL-TSLQKIW--LHTNP 312
Score = 28.2 bits (63), Expect = 1.2
Identities = 12/95 (12%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEK--IREYR 88
L+ + ++ L L+ + E + + + L+ L ++ E
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLE---IFVDVTSSVECLE--LRDTDLDTFHFSELS 243
Query: 89 AVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRS 123
+ + + T +V I + L +I
Sbjct: 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278
Score = 27.4 bits (61), Expect = 2.1
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
++++L L N I I L L L N I I
Sbjct: 53 AVKSLDLSNNRITYISNS---DLQRCVNLQALV--LTSNGINTI 91
Score = 27.0 bits (60), Expect = 2.2
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
LS + ++SL L+L GNP + + E + + + +L L V + KI+
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETS--LFSHLTKLQILR-VGNMDTFTKIQR 167
Score = 25.1 bits (55), Expect = 9.6
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+S L+R +L+ L L N I I E + S + L LD L N + +
Sbjct: 67 ISNSDLQRCVNLQALVLTSNGINTI-EEDSFSS--LGSLEHLD--LSYNYLSNL 115
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 31.9 bits (73), Expect = 0.059
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREY---RAVVSTMIPQLVTLDSVLYGNPIE 82
L + L+ + L+ N I K+ + L+ NP+
Sbjct: 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS--LFNNPVP 307
Score = 30.8 bits (70), Expect = 0.13
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+L L L N I+ I +L L L N I I
Sbjct: 194 TLNELHLDHNKIQAIELE---DLLRYSKLYRLG--LGHNQIRMI 232
Score = 30.4 bits (69), Expect = 0.19
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+ + + L R + L L L N I I + +P L L L N + ++
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENG---SLSFLPTLRELH--LDNNKLSRV 256
Score = 27.7 bits (62), Expect = 1.6
Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 8/47 (17%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREY 87
L L + + I + L L L N I+ I
Sbjct: 173 KLNYLRISEAKLTGIP------KDLPETLNELH--LDHNKIQAIELE 211
Score = 27.3 bits (61), Expect = 2.2
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIE 82
SL L ++ N I K+ + V + + + ++ + GNP+E
Sbjct: 124 SLVELRIHDNRIRKVPKG---VFSGLRNMNCIE--MGGNPLE 160
Score = 25.4 bits (56), Expect = 9.9
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L L N I ++R+ + L L L N I KI
Sbjct: 55 DTTLLDLQNNDISELRK--DDFKGL-QHLYALV--LVNNKISKI 93
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 31.5 bits (72), Expect = 0.077
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 30 YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L R + +L L L+GN I + E + L L L+ N + +
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPER---AFRGLHSLDRLL--LHQNRVAHV 192
Score = 30.0 bits (68), Expect = 0.25
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+ R ++SL L L+ N + + + +L+TL L+ N + +
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHP--HAFRDL-GRLMTLY--LFANNLSAL 216
Score = 26.5 bits (59), Expect = 3.2
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+ + L TL L ++++ + + L L L N ++ +
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPG---LFRGLAALQYLY--LQDNALQAL 144
Score = 25.7 bits (57), Expect = 6.6
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
+ + + L+GN I + L L L+ N + +I
Sbjct: 33 ASQRIFLHGNRISHVPAA---SFRACRNLTILW--LHSNVLARIDA 73
Score = 25.3 bits (56), Expect = 7.5
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAV 90
+ R +L L L+ N + +I T + L LD L N ++R
Sbjct: 47 VPAASFRACRNLTILWLHSNVLARIDAA---AFTGLALLEQLD--LSDNA--QLRSVDPA 99
Query: 91 VSTMIPQLVTLD 102
+ +L TL
Sbjct: 100 TFHGLGRLHTLH 111
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 31.7 bits (72), Expect = 0.080
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 28 EEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
+ L R + +L L L N I + + + + L ++D N I + E
Sbjct: 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK--LNSLKSID--FSSNQIFLVCE 165
Score = 30.2 bits (68), Expect = 0.26
Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYR 88
++ +++L+ L+L N + ++ +P++ +D L N I I++
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSS---NFYGLPKVAYID--LQKNHIAIIQDQ- 356
Query: 89 AVVSTMIPQLVTLD 102
+ +L TLD
Sbjct: 357 --TFKFLEKLQTLD 368
Score = 27.8 bits (62), Expect = 1.5
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAV 90
L+ V + L+ L+L N I KI + + L L+ L N + ++
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADE---AFYGLDNLQVLN--LSYNLLGELYSS--- 332
Query: 91 VSTMIPQLVTLD 102
+P++ +D
Sbjct: 333 NFYGLPKVAYID 344
Score = 27.5 bits (61), Expect = 2.1
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREY 87
L V + +LR LSL N + + + + L LD + N +
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRLTVLSH-----NDLPANLEILD--ISRNQLLAPNPD 544
Score = 26.7 bits (59), Expect = 4.0
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 24 RVVIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEK 83
++ E L V ++ L+ L L N + + V + + L L L N +
Sbjct: 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG---VFSHLTALRGLS--LNSNRLTV 518
Query: 84 IREYRAVVSTMIPQLVTLD 102
+ + + L LD
Sbjct: 519 LSH-----NDLPANLEILD 532
Score = 25.9 bits (57), Expect = 7.0
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 30 YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
+ + + L+TL L N + I IP + + L GN + + +
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTIH--------FIPSIPDIF--LSGNKLVTLPK 398
Score = 25.9 bits (57), Expect = 7.1
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
++NSL+++ N I + E + L L N +
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCE-HELEPLQGKTLSFFS--LAANSLYSR 189
Score = 25.5 bits (56), Expect = 9.9
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 6/76 (7%)
Query: 27 IEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
+ R + +LR L L + I + + L L LY +
Sbjct: 60 TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD---AFQGLFHLFELR--LYFCGLSDAVL 114
Query: 87 YRAVVSTMIPQLVTLD 102
+ L LD
Sbjct: 115 KDGYFRNL-KALTRLD 129
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.097
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 110 EKQETNALNAEIRSYLLPKYEKLEAATFKRTAVSVE 145
EKQ L A ++ Y + A K T +E
Sbjct: 18 EKQALKKLQASLKLY-AD--DSAPALAIKAT---ME 47
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens}
PDB: 3rez_A*
Length = 130
Score = 29.8 bits (67), Expect = 0.15
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNP 80
L L GN + + + +P L T L NP
Sbjct: 32 DTTELVLTGNNLTALPPG---LLDALPALRTAH--LGANP 66
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 30.4 bits (69), Expect = 0.17
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
E + ++ L L + N + + Y IP L LD L N + +
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLVALNLY----GQPIPTLKVLD--LSHNHLLHV 310
Score = 30.0 bits (68), Expect = 0.24
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYR 88
L + L TLS+ N +E+I + L L L N + +
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDD---TFQATTSLQNLQ--LSSNRLTHVD--- 181
Query: 89 AVVSTMIPQLVTLD 102
++IP L +
Sbjct: 182 ---LSLIPSLFHAN 192
Score = 30.0 bits (68), Expect = 0.25
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
YL V + V L L L N + + + P+L TL + N +E+I +
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRG---IFHNTPKLTTLS--MSNNNLERIED 158
Score = 27.3 bits (61), Expect = 2.3
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100
L + L N +EKI + + +L L + N + + Y IP L
Sbjct: 249 GLVEVDLSYNELEKIMYH---PFVKMQRLERLY--ISNNRLVALNLY----GQPIPTLKV 299
Query: 101 LD 102
LD
Sbjct: 300 LD 301
Score = 26.9 bits (60), Expect = 2.7
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
N+ + ++ + + K+ + Q+ L+ L IE+I
Sbjct: 45 NNQKIVTFKNSTMRKLPAA---LLDSFRQVELLN--LNDLQIEEIDT 86
Score = 26.5 bits (59), Expect = 3.8
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 13/62 (20%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100
++ L N I +R + +L L L N + P LV
Sbjct: 206 AVEELDASHNSINVVRG------PVNVELTILK--LQHNNLTDTAWLL-----NYPGLVE 252
Query: 101 LD 102
+D
Sbjct: 253 VD 254
Score = 25.8 bits (57), Expect = 6.1
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 8/43 (18%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIE 82
+ L L L N I ++ + L L L N +
Sbjct: 318 DRLENLYLDHNSIVTLKL------STHHTLKNLT--LSHNDWD 352
Score = 25.4 bits (56), Expect = 10.0
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 10/46 (21%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
SL ++ N + + + LD N I +R
Sbjct: 187 SLFHANVSYNLLSTLAIP--------IAVEELD--ASHNSINVVRG 222
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 30.3 bits (69), Expect = 0.19
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAV 90
L + ++ L L N I+ + + + ++ L L+ L N I ++
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASS-DTLEHLN--LQYNFIYDVKG---- 186
Query: 91 VSTMIPQLVTLD 102
+ +L TLD
Sbjct: 187 -QVVFAKLKTLD 197
Score = 28.8 bits (65), Expect = 0.62
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLV 99
+ + L N I +R+ ++ LD L N I+ + + + ++ L
Sbjct: 120 QGKKNIYLANNKITMLRDL---DEGCRSRVQYLD--LKLNEIDTV-NFAELAASS-DTLE 172
Query: 100 TLD 102
L+
Sbjct: 173 HLN 175
Score = 26.5 bits (59), Expect = 3.8
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L +++LRTL L N ++++ P + TL N I ++
Sbjct: 76 LESLSTLRTLDLNNNYVQELLV--------GPSIETLH--AANNNISRV 114
Score = 26.1 bits (58), Expect = 4.3
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
N + + + +++ + + LD L GNP+ +I
Sbjct: 10 NRYKIEKVTDSSLKQALAS---LRQSAWNVKELD--LSGNPLSQI 49
Score = 25.7 bits (57), Expect = 6.4
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 11/62 (17%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100
S+ TL N I ++ + + L N I +R+ ++
Sbjct: 100 SIETLHAANNNISRVS------CSRGQGKKNIY--LANNKITMLRDL---DEGCRSRVQY 148
Query: 101 LD 102
LD
Sbjct: 149 LD 150
Score = 25.3 bits (56), Expect = 9.5
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+S L L L+L N + + + + + L TLD L N ++++
Sbjct: 47 SQISAADLAPFTKLELLNLSSNVLYETLDLES-----LSTLRTLD--LNNNYVQEL 95
Score = 25.3 bits (56), Expect = 10.0
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 8/46 (17%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV-LYGNPIEKI 84
+ +SL N + I + L+ L GN
Sbjct: 214 AGVTWISLRNNKLVLI-------EKALRFSQNLEHFDLRGNGFHCG 252
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 30.2 bits (69), Expect = 0.20
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEK 83
V+ + +L TL L N I IR ++++ ++ + D I+K
Sbjct: 306 VIGGLTNLTTLFLSQNHITDIRP----LASL-SKMDSAD--FANQVIKK 347
Score = 28.7 bits (65), Expect = 0.59
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 7/49 (14%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L + L L + N I I + L L L + I I
Sbjct: 84 LSNLVKLTNLYIGTNKITDISAL-----QNLTNLRELY--LNEDNISDI 125
Score = 26.4 bits (59), Expect = 3.9
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+ S+ L + G + I+ + + L L+ L GN I I
Sbjct: 40 QEELESITKLVVAGEKVASIQG----IEYL-TNLEYLN--LNGNQITDI 81
Score = 26.4 bits (59), Expect = 4.2
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L L++ + ++ + ++ + L +L L N IE I
Sbjct: 156 GLNYLTVTESKVKDVTP----IANL-TDLYSLS--LNYNQIEDI 192
Score = 26.0 bits (58), Expect = 5.4
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L +LSL N IE I ++++ L Y N I I
Sbjct: 178 DLYSLSLNYNQIEDISP----LASL-TSLHYFT--AYVNQITDI 214
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 30.4 bits (69), Expect = 0.22
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 40 NSLRTLSLYGNPIEKIREY-RAVVSTMIPQLVTLDSVLYGNPIEKI 84
+L + L N I+ I + ++LD + NPI+ I
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD--MSLNPIDFI 196
Score = 28.5 bits (64), Expect = 0.88
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPI 81
+L ++ SL TL N IE + + L + L N +
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKG--ILQHFP-KSLAFFN--LTNNSV 557
Score = 28.1 bits (63), Expect = 1.2
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+S + + L NP++ ++ Y + +L LD L IE I
Sbjct: 32 SSTKNIDLSFNPLKILKSY---SFSNFSELQWLD--LSRCEIETI 71
Score = 28.1 bits (63), Expect = 1.2
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 8/63 (12%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLV 99
L++L+L N + +P L LD L N + + L
Sbjct: 328 PFLKSLTLTMNKGSISFK-----KVALPSLSYLD--LSRNALSFSGCC-SYSDLGTNSLR 379
Query: 100 TLD 102
LD
Sbjct: 380 HLD 382
Score = 28.1 bits (63), Expect = 1.3
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L+ L + ++++ E+ A +S + +L+ LD + +
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLS--LEKLLYLD--ISYTNTKID 439
Score = 27.7 bits (62), Expect = 1.6
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 27 IEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
++ V +L L L +E+I V + +L L+ + N + +
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWG---VFDTLHRLQLLN--MSHNNLLFL 512
Score = 27.3 bits (61), Expect = 2.0
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTM 94
+ SL L + + + + L L+ + N I + A S +
Sbjct: 99 SFSGLTSLENLVAVETKLASLES--FPIGQL-ITLKKLN--VAHNFIHSC-KLPAYFSNL 152
Query: 95 IPQLVTLD 102
LV +D
Sbjct: 153 -TNLVHVD 159
Score = 26.9 bits (60), Expect = 2.9
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 33 VFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVS 92
+ NSLR L L N + + +L LD + ++++ E+ A +S
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAIIMSA----NFMGLEELQHLD--FQHSTLKRVTEFSAFLS 422
Query: 93 TMIPQLVTLD 102
+ +L+ LD
Sbjct: 423 --LEKLLYLD 430
Score = 26.1 bits (58), Expect = 4.6
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+ L+ L L IE I + + L L L GNPI+
Sbjct: 52 FSNFSELQWLDLSRCEIETIED--KAWHGL-HHLSNLI--LTGNPIQSF 95
Score = 25.4 bits (56), Expect = 9.8
Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 7/62 (11%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100
SL L L N + + L LD L N + + +L
Sbjct: 351 SLSYLDLSRNALSFSGCC-SYSDLGTNSLRHLD--LSFNGAIIMSA----NFMGLEELQH 403
Query: 101 LD 102
LD
Sbjct: 404 LD 405
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 30.0 bits (68), Expect = 0.23
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMI 95
L ++ L L L+GN I T + ++ +D L G +
Sbjct: 146 LGFLSKLEVLDLHGNEITNTGGL-----TRLKKVNWID--LTGQKCVNEPVKYQPELYIT 198
Query: 96 PQLVTLDSVFILPSEKQETNALNAEIRSYLLPKY 129
+ D +I P + + LP Y
Sbjct: 199 NTVKDPDGRWISPYYISNGGSYVDGCVLWELPVY 232
Score = 26.5 bits (59), Expect = 3.3
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
+L LS+ N ++ I + + +L LD L+GN I
Sbjct: 129 NLEILSIRNNKLKSIVM----LGFL-SKLEVLD--LHGNEITNTGG 167
Score = 25.4 bits (56), Expect = 7.6
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
++ +L+ L L N I + + + + +L L + N ++ +
Sbjct: 59 MQFFTNLKELHLSHNQISDL----SPLKDL-TKLEELS--VNRNRLKNL 100
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 30.2 bits (68), Expect = 0.23
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAV 90
L + ++ L L N I+ + + + ++ L L+ L N I ++
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASS-DTLEHLN--LQYNFIYDVKG---- 186
Query: 91 VSTMIPQLVTLD 102
+ +L TLD
Sbjct: 187 -QVVFAKLKTLD 197
Score = 28.3 bits (63), Expect = 0.97
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLV 99
+ + L N I +R+ ++ LD L N I+ + + + ++ L
Sbjct: 120 QGKKNIYLANNKITMLRDL---DEGCRSRVQYLD--LKLNEIDTV-NFAELAASS-DTLE 172
Query: 100 TLD 102
L+
Sbjct: 173 HLN 175
Score = 26.0 bits (57), Expect = 6.0
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIE 82
+ +SL N + I + + L D L GN
Sbjct: 214 AGVTWISLRNNKLVLIEK---ALRFS-QNLEHFD--LRGNGFH 250
Score = 25.6 bits (56), Expect = 8.1
Identities = 4/46 (8%), Positives = 13/46 (28%), Gaps = 5/46 (10%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIR 85
R + + + V+ +TL+ +++
Sbjct: 336 ARQREIDALKEQYRTVID---QVTLRKQAKITLE--QKKKALDEQV 376
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 30.1 bits (68), Expect = 0.23
Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 27 IEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+E + + +L L L +E++ + L L+ + N ++ +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPT---AFNSLSSLQVLN--MASNQLKSV 509
Score = 29.7 bits (67), Expect = 0.30
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 35 VLRRVNSLRTLSLYGNPIEKIREYR-AVVSTMIPQLVTLDSVLYGNPIEKI 84
+ +L L L N I+ I V+ M ++LD L NP+ I
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD--LSLNPMNFI 192
Score = 27.8 bits (62), Expect = 1.4
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
S + L L NP+ + Y P+L LD L I+ I
Sbjct: 28 FSTKNLDLSFNPLRHLGSY---SFFSFPELQVLD--LSRCEIQTI 67
Score = 27.4 bits (61), Expect = 1.9
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAV 90
L++ ++SL+ L + + + + + L L+ + N I+ +
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENF--PIGHL-KTLKELN--VAHNLIQSFKLPEYF 145
Query: 91 VSTMIPQLVTLD 102
+ + L LD
Sbjct: 146 SN--LTNLEHLD 155
Score = 27.4 bits (61), Expect = 2.2
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L L + ++++ E+ V + L+ LD +
Sbjct: 396 EQLEHLDFQHSNLKQMSEF--SVFLSLRNLIYLD--ISHTHTRVA 436
Score = 27.0 bits (60), Expect = 2.5
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L + L+ L L I+ I + ++ L TL L GNPI+ +
Sbjct: 43 LGSYSFFSFPELQVLDLSRCEIQTIED--GAYQSL-SHLSTLI--LTGNPIQSL 91
Score = 27.0 bits (60), Expect = 3.0
Identities = 14/62 (22%), Positives = 18/62 (29%), Gaps = 7/62 (11%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100
SL L L N + L LD L N + + + QL
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLD--LSFNGVITMSS----NFLGLEQLEH 400
Query: 101 LD 102
LD
Sbjct: 401 LD 402
Score = 25.8 bits (57), Expect = 6.1
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 34 FVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVST 93
SL+ L L N + + + QL LD + ++++ E+ V
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSS----NFLGLEQLEHLD--FQHSNLKQMSEF--SVFL 418
Query: 94 MIPQLVTLD 102
+ L+ LD
Sbjct: 419 SLRNLIYLD 427
Score = 25.8 bits (57), Expect = 6.5
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 30 YLSVFVLRRVNSLRTLSLYGNPI 52
+ + R+ SL+ + L+ NP
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNPW 530
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 30.1 bits (68), Expect = 0.25
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 28 EEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
LS + + SL L L N I+KI+ ++ + + LD L N ++ I
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN--MRRFHVLD--LTFNKVKSI 169
Score = 27.0 bits (60), Expect = 2.8
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+ + ++ L L L N I + + + P L L L N ++ +
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRALGD--QSFLGL-PNLKELA--LDTNQLKSV 386
Score = 26.2 bits (58), Expect = 4.8
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNP 80
+ +L+ L+L N ++ + + + + L + L+ NP
Sbjct: 366 SFLGLPNLKELALDTNQLKSVPD--GIFDRL-TSLQKIW--LHTNP 406
Score = 25.5 bits (56), Expect = 7.8
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 33 VFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
F + ++T L + I + V + L L L N I KI
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFAL---LKSVFSHFTDLEQLT--LAQNEINKI 314
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 29.6 bits (67), Expect = 0.27
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 30 YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRA 89
Y+ L+ + L+ L ++ ++ + V ST L+ + + I
Sbjct: 95 YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST--DIFFILE-ITDNPYMTSIPV--N 149
Query: 90 VVSTMIPQLVTLD 102
+ + +TL
Sbjct: 150 AFQGLCNETLTLK 162
Score = 25.7 bits (57), Expect = 6.3
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNP-IEKI 84
N TL LY N ++ Y A T +L + L N + I
Sbjct: 156 NETLTLKLYNNGFTSVQGY-AFNGT---KLDAVY--LNKNKYLTVI 195
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 29.9 bits (67), Expect = 0.32
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
E + ++ L L + N + + Y IP L LD L N + +
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLVALNLY----GQPIPTLKVLD--LSHNHLLHV 316
Score = 29.9 bits (67), Expect = 0.34
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
YL V + V L L L N + + + P+L TL + N +E+I +
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERNDLSSLPRG---IFHNTPKLTTLS--MSNNNLERIED 164
Score = 28.0 bits (62), Expect = 1.4
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYR 88
L + L TLS+ N +E+I + L L L N + +
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDD---TFQATTSLQNLQ--LSSNRLTHVDL-- 188
Query: 89 AVVSTMIPQLVTLD 102
++IP L +
Sbjct: 189 ----SLIPSLFHAN 198
Score = 26.4 bits (58), Expect = 3.8
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100
L + L N +EKI + + +L L + N + + Y IP L
Sbjct: 255 GLVEVDLSYNELEKIMYH---PFVKMQRLERLY--ISNNRLVALNLY----GQPIPTLKV 305
Query: 101 LD 102
LD
Sbjct: 306 LD 307
Score = 26.0 bits (57), Expect = 5.5
Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
N+ + ++ + + K+ A++ + Q+ L+ L IE+I
Sbjct: 51 NNQKIVTFKNSTMRKLPA--ALLDSF-RQVELLN--LNDLQIEEIDT 92
Score = 25.3 bits (55), Expect = 9.2
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 8/43 (18%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIE 82
+ L L L N I ++ + L L L N +
Sbjct: 324 DRLENLYLDHNSIVTLKL------STHHTLKNLT--LSHNDWD 358
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 29.6 bits (67), Expect = 0.43
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
++ +L+ L L N I+ ++ + L L+ L N I++
Sbjct: 140 TQVQLENLQELLLSNNKIQALKS-EELDIFANSSLKKLE--LSSNQIKEF 186
Score = 29.2 bits (66), Expect = 0.56
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIE 82
SL++L+L N I + + V L LD + NP +
Sbjct: 585 SLKSLNLQKNLITSVEK--KVFGPAFRNLTELD--MRFNPFD 622
Score = 28.0 bits (63), Expect = 1.2
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYR 88
+ + V V + + L+ + L N + + V L +L+ L N I + +
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPAS---VFNNQVSLKSLN--LQKNLITSVEK-- 601
Query: 89 AVVSTMIPQLVTLD 102
V L LD
Sbjct: 602 KVFGPAFRNLTELD 615
Score = 28.0 bits (63), Expect = 1.3
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 32 SVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+ F+ + +L L L N + + +PQL L N I+ +
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGND---SFAWLPQLEYFF--LEYNNIQHL 287
Score = 28.0 bits (63), Expect = 1.4
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
V SL+ L L ++ + + + L LD L N I I
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPL-RNLTILD--LSNNNIANI 495
Score = 27.3 bits (61), Expect = 2.2
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 26 VIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIR 85
+ E L +F SL+ L L N I++ + I +L L L +
Sbjct: 160 LKSEELDIFANS---SLKKLELSSNQIKEFSP-GCFHA--IGRLFGLF--LNNVQLGPSL 211
Query: 86 EYRAVVSTMIPQLVTLD 102
+ + + L
Sbjct: 212 TEKLCLELANTSIRNLS 228
Score = 27.3 bits (61), Expect = 2.5
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Query: 32 SVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVV 91
+ + S+R LSL + + + L LD L N + +
Sbjct: 214 KLCLELANTSIRNLSLSNSQLSTTSN-TTFLGLKWTNLTMLD--LSYNNLNVVGND---S 267
Query: 92 STMIPQLVTLD 102
+PQL
Sbjct: 268 FAWLPQLEYFF 278
Score = 27.3 bits (61), Expect = 2.5
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 27 IEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
I + L+ R + ++ + L N ++ R + + P L L L ++ +
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQL--TRNSFALV-PSLQRLM--LRRVALKNVDS 471
Query: 87 YRAVVSTMIPQLVTLD 102
+ + L LD
Sbjct: 472 SPSPFQPL-RNLTILD 486
Score = 26.9 bits (60), Expect = 3.0
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 32 SVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVV 91
FV + L L+L N I KI S + L LD L N I + +
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIESD--AFSWL-GHLEVLD--LGLNEIGQELTGQEWR 427
Query: 92 STMIPQLVTLD 102
+ + +
Sbjct: 428 G--LENIFEIY 436
Score = 26.1 bits (58), Expect = 5.4
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMI-----PQLVTLDSVLYGNPIEK 83
++ +L + L L L N + ++ ++ + L L+ L N ++
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN--LESNGFDE 550
Query: 84 IREYRAVVSTMIPQLVTLD 102
I V + +L +D
Sbjct: 551 IPVE---VFKDLFELKIID 566
Score = 25.3 bits (56), Expect = 9.0
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+L L L N I+KI+ L+TLD L N +
Sbjct: 98 NLTELHLMSNSIQKIKN--NPFVKQ-KNLITLD--LSHNGLSST 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
c.10.2.7
Length = 347
Score = 29.3 bits (65), Expect = 0.45
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
LR + LR L++ + + + A T P+L L+ L N +E +
Sbjct: 51 DLRGLGELRNLTIVKSGLRFV-APDAFHFT--PRLSRLN--LSFNALESLSW 97
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 29.2 bits (66), Expect = 0.49
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYR 88
+ S + + +L+ L+L GN K + + +L L L + I ++
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV--LSFCDLSSIDQH- 494
Query: 89 AVVSTMIPQLVTLD 102
T + + +D
Sbjct: 495 --AFTSLKMMNHVD 506
Score = 28.4 bits (64), Expect = 0.92
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100
L+ L+L + ++ E + +P L L+ L GN K + + +L
Sbjct: 426 LLKVLNLSHSLLDISSEQ---LFDGLPALQHLN--LQGNHFPKGNIQKTNSLQTLGRLEI 480
Query: 101 LD 102
L
Sbjct: 481 LV 482
Score = 27.7 bits (62), Expect = 1.6
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 27 IEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L L + +LR L L + IE + + L +L+ L N +
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL-SHLQSLN--LSYNEPLSL 391
Score = 26.9 bits (60), Expect = 2.6
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAV 90
LR ++ L++L+L N ++ PQL LD L ++
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTE---AFKECPQLELLD--LAFTRLKVKDAQSPF 421
Query: 91 VSTMIPQLVTLD 102
+ + L L+
Sbjct: 422 QN--LHLLKVLN 431
Score = 26.5 bits (59), Expect = 3.5
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100
+L+ L L N E + + S P L L + GN + + L
Sbjct: 302 TLKKLVLSANKFENL--CQISASNF-PSLTHLS--IKGNTKRLELGTGCLENL--ENLRE 354
Query: 101 LD 102
LD
Sbjct: 355 LD 356
Score = 26.5 bits (59), Expect = 3.7
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYR 88
E L SL LS+ GN + + L LD L + IE
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL--ENLRELD--LSHDDIETSDCCN 369
Query: 89 AVVSTMIPQLVTLD 102
+ + L +L+
Sbjct: 370 LQLRNL-SHLQSLN 382
Score = 26.5 bits (59), Expect = 4.2
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 32 SVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+VF S+ +++L + I L LD L + ++
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSN---TFHCFSGLQELD--LTATHLSEL 293
Score = 26.1 bits (58), Expect = 4.8
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
NS L N + I+ S + L LD L I I
Sbjct: 33 NSTECLEFSFNVLPTIQN--TTFSRL-INLTFLD--LTRCQIYWI 72
Score = 26.1 bits (58), Expect = 5.7
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
++ L +L+ L I I + L +L L N I I
Sbjct: 96 MAETALSGPKALKHLFFIQTGISSIDF--IPLHNQ-KTLESLY--LGSNHISSI 144
Score = 26.1 bits (58), Expect = 5.9
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
R+ +L L L I I E S +L TL L NP+ +
Sbjct: 53 FSRLINLTFLDLTRCQIYWIHE-DTFQSQ--HRLDTLV--LTANPLIFM 96
Score = 25.7 bits (57), Expect = 8.2
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L+ L N I + + + S ++L+ L GN I I
Sbjct: 154 KLKVLDFQNNAIHYLSK-EDMSSLQQATNLSLN--LNGNDIAGI 194
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 28.8 bits (65), Expect = 0.58
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L F + + +L+ L++ N I+ + + + L LD L N I+ I
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN--LTNLEHLD--LSSNKIQSI 164
Score = 27.2 bits (61), Expect = 1.8
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+ ++ L TL L GNPI+ + + + L L + +
Sbjct: 71 AYQSLSHLSTLILTGNPIQSL---ALGAFSGLSSLQKLV--AVETNLASL 115
Score = 25.7 bits (57), Expect = 5.8
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
S + L L NP+ + + P+L LD L I+ I
Sbjct: 29 STKNLDLSFNPLRHL---GSYSFFSFPELQVLD--LSRCEIQTI 67
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 28.8 bits (65), Expect = 0.58
Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 7/71 (9%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLV 99
++ LS N I + + ++ L L ++ +
Sbjct: 353 TNINWLSAGHNQISDLTPL-----ANLTRITQLG--LNDQAWTNAPVNYKANVSIPNTVK 405
Query: 100 TLDSVFILPSE 110
+ I P+
Sbjct: 406 NVTGALIAPAT 416
Score = 27.2 bits (61), Expect = 2.1
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
+L L+LY N I I VS++ +L L Y N + +
Sbjct: 310 NLTYLTLYFNNISDISP----VSSL-TKLQRLF--FYNNKVSDVSS 348
Score = 26.9 bits (60), Expect = 2.6
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+L L L N +E I + + L L LY N I I
Sbjct: 287 TALTNLELNENQLEDISP-----ISNLKNLTYLT--LYFNNISDI 324
Score = 26.5 bits (59), Expect = 3.9
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
N+L ++ N + I + + +LV + + N I I
Sbjct: 68 NNLTQINFSNNQLTDITPLKN-----LTKLVDIL--MNNNQIADI 105
Score = 25.7 bits (57), Expect = 6.2
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+L +L N I I + + L L L GN ++ I
Sbjct: 200 NLESLIATNNQISDITP----LGIL-TNLDELS--LNGNQLKDI 236
Score = 25.7 bits (57), Expect = 6.4
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L + + N I I ++ + L L L+ N I I
Sbjct: 91 KLVDILMNNNQIADITP----LANL-TNLTGLT--LFNNQITDI 127
Score = 25.7 bits (57), Expect = 6.5
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L + +L L L N I + +S + +L L L N I I
Sbjct: 239 LASLTNLTDLDLANNQISNLAP----LSGL-TKLTELK--LGANQISNI 280
Score = 25.3 bits (56), Expect = 8.3
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+L LSL GN ++ I ++++ L LD L N I +
Sbjct: 221 TNLDELSLNGNQLKDIGT----LASL-TNLTDLD--LANNQISNL 258
Score = 25.3 bits (56), Expect = 9.5
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L L L N I I ++ + L L+ L N +E I
Sbjct: 266 KLTELKLGANQISNISP----LAGL-TALTNLE--LNENQLEDI 302
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 29.1 bits (65), Expect = 0.64
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMI 95
+ SL L + N I K+ E + PQL LD + NP I + +V +
Sbjct: 802 ITTCPSLIQLQIGSNDIRKVDE------KLTPQLYILD--IADNPNISI-DVTSVCPYIE 852
Query: 96 PQLVTLD 102
+ L
Sbjct: 853 AGMYVLL 859
Score = 27.5 bits (61), Expect = 1.8
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 32 SVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV-LYGNPIEKI 84
++F + V + ++ N I S + + +V L N I+K
Sbjct: 636 NIFNAKSVYVMGSVDFSYNKIGSEGR-NISCSMDDYKGINASTVTLSYNEIQKF 688
Score = 26.8 bits (59), Expect = 3.1
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 4/47 (8%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
+ + L N ++ I S + + ++D N I
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNAKS--VYVMGSVD--FSYNKIGSEGR 661
Score = 26.0 bits (57), Expect = 6.2
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTM----IPQLVTLDSVLYGNPIEKIREYRAV 90
+ + + T+ L N + I E L T+D L N + + +
Sbjct: 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID--LRFNKLTSLSD--DF 747
Query: 91 VSTMIPQLVTLD 102
+T +P L +D
Sbjct: 748 RATTLPYLSNMD 759
Score = 25.6 bits (56), Expect = 9.0
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100
L L L N IE+I E Q+ L N ++ I S + + +
Sbjct: 596 KLTDLKLDYNQIEEIPED---FCAFTDQVEGLG--FSHNKLKYIPNIFNAKS--VYVMGS 648
Query: 101 LD 102
+D
Sbjct: 649 VD 650
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 28.1 bits (63), Expect = 1.1
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAV 90
S+ L L L+L + K++ V +P L TLD L N ++ + +
Sbjct: 46 FSLATLMPYTRLTQLNLDRAELTKLQ-----VDGTLPVLGTLD--LSHNQLQSL----PL 94
Query: 91 VSTMIPQLVTLD 102
+ +P L LD
Sbjct: 95 LGQTLPALTVLD 106
Score = 26.2 bits (58), Expect = 4.8
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 10/62 (16%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100
L L N + +L L+ L + K++ V +P L T
Sbjct: 32 DTTILHLSENLLYTF---SLATLMPYTRLTQLN--LDRAELTKLQ-----VDGTLPVLGT 81
Query: 101 LD 102
LD
Sbjct: 82 LD 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 27.9 bits (62), Expect = 1.1
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNP-IEKIRE 86
Y++ + + +L+ L + I+ + + + S Q V LD + N I I
Sbjct: 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS---LQKVLLD--IQDNINIHTIER 146
Score = 26.7 bits (59), Expect = 3.3
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 5/41 (12%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPI 81
+ L + I++ A L ++ + N +
Sbjct: 31 NAIELRFVLTKLRVIQK-GAFSG--FGDLEKIE--ISQNDV 66
Score = 25.9 bits (57), Expect = 5.8
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
L L N I++I + QL L+ + N +E++
Sbjct: 154 FESVILWLNKNGIQEIHNS----AFNGTQLDELN-LSDNNNLEELPN 195
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1
c.30.1.1 d.142.1.2
Length = 412
Score = 27.8 bits (63), Expect = 1.2
Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 5/19 (26%)
Query: 23 DRVVIEEYL-----SVFVL 36
VVI+E+L S +
Sbjct: 184 GPVVIDEFLAGNELSAMAV 202
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 27.7 bits (62), Expect = 1.6
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
++ + TLS +G + I + L+ L+ L N I +
Sbjct: 37 QADLDGITTLSAFGTGVTTIEGV-----QYLNNLIGLE--LKDNQITDL 78
Score = 25.8 bits (57), Expect = 5.6
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
++L+ L L N I I ++ + L L + + +
Sbjct: 129 SNLQVLYLDLNQITNISP----LAGL-TNLQYLS--IGNAQVSDL 166
Score = 25.8 bits (57), Expect = 6.0
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L+ + + L L GNP++ + ++ + + TLD L I +
Sbjct: 81 LKNLTKITELELSGNPLKNVSA----IAGL-QSIKTLD--LTSTQITDV 122
Score = 25.4 bits (56), Expect = 7.6
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+L+ LS+ + + ++ + +L TL N I I
Sbjct: 152 NLQYLSIGNAQVSDLTP----LANL-SKLTTLK--ADDNKISDI 188
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ALS collaborative
crystallography; 2.15A {Ehrlichia chaffeensis}
Length = 442
Score = 27.5 bits (62), Expect = 1.6
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 5/19 (26%)
Query: 23 DRVVIEEYL-----SVFVL 36
++IEE+L S F L
Sbjct: 201 CAIIIEEFLEGKEISFFTL 219
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN
structural genomics of infectious diseases, csgid; HET:
MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Length = 431
Score = 27.4 bits (62), Expect = 1.7
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 5/19 (26%)
Query: 23 DRVVIEEYL-----SVFVL 36
R+V+EE+L S V+
Sbjct: 185 HRIVVEEFLDGEEASFIVM 203
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide
synthetase, GAR synthetase, ATP B purine nucleotide
biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus}
PDB: 2yya_A
Length = 424
Score = 27.4 bits (62), Expect = 1.7
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 5/19 (26%)
Query: 23 DRVVIEEYL-----SVFVL 36
+RVVIEE+L S V+
Sbjct: 180 ERVVIEEFLEGEEASYIVM 198
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 27.8 bits (62), Expect = 1.7
Identities = 6/48 (12%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 85 REYRAVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSYLLPKYEKL 132
E V + +L+ + + + A + L +K
Sbjct: 623 TEI-MPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQ 669
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 27.2 bits (61), Expect = 1.8
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIR 85
L++L++ + + R + P+L L + I +
Sbjct: 160 ELKSLNIQFDGVHDYRG----IEDF-PKLNQLY--AFSQTIGGKK 197
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 27.5 bits (61), Expect = 2.0
Identities = 6/48 (12%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 85 REYRAVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSYLLPKYEKL 132
E V + +L+ + + + A + L +K
Sbjct: 140 TEI-MPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQ 186
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 27.3 bits (61), Expect = 2.1
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L+ + L+ + + N ++K+ + P L + N +E++
Sbjct: 149 LQNSSFLKIIDVDNNSLKKL-------PDLPPSLEFIA--AGNNQLEEL 188
Score = 26.5 bits (59), Expect = 3.4
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 14/62 (22%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100
SL ++ N +E++ E + +P L T+ N ++ + + P L
Sbjct: 216 SLESIVAGNNILEELPELQ-----NLPFLTTIY--ADNNLLKTL-------PDLPPSLEA 261
Query: 101 LD 102
L+
Sbjct: 262 LN 263
Score = 26.5 bits (59), Expect = 4.2
Identities = 11/80 (13%), Positives = 21/80 (26%), Gaps = 9/80 (11%)
Query: 5 LGHLHNGWQVDQAILSEEDRVVIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVST 64
+N W + + E +S L L + + E
Sbjct: 36 KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL------ 89
Query: 65 MIPQLVTLDSVLYGNPIEKI 84
P L +L N + ++
Sbjct: 90 -PPHLESLV--ASCNSLTEL 106
Score = 25.3 bits (56), Expect = 8.4
Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 9/51 (17%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE 86
L+ + L + N ++K+ + + L ++ N +E++ E
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPD-------LPLSLESIV--AGNNILEELPE 232
Score = 25.3 bits (56), Expect = 9.1
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 14/63 (22%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLV 99
L L + N +EK+ E + L +D + N ++K+ + P L
Sbjct: 131 PLLEYLGVSNNQLEKLPELQ-----NSSFLKIID--VDNNSLKKL-------PDLPPSLE 176
Query: 100 TLD 102
+
Sbjct: 177 FIA 179
Score = 25.3 bits (56), Expect = 9.4
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 16/62 (25%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100
+L L+ N I + + P L L+ + N + ++ + P+L
Sbjct: 298 NLYYLNASSNEIRSL-------CDLPPSLEELN--VSNNKLIEL-------PALPPRLER 341
Query: 101 LD 102
L
Sbjct: 342 LI 343
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide
synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus
kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Length = 451
Score = 27.1 bits (61), Expect = 2.4
Identities = 8/19 (42%), Positives = 9/19 (47%), Gaps = 5/19 (26%)
Query: 23 DRVVIEEYL-----SVFVL 36
+VVIEEYL S
Sbjct: 201 SQVVIEEYLEGEEFSFMAF 219
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine
nucleotid structural genomics, NPPSFA; 2.80A {Thermus
thermophilus}
Length = 417
Score = 27.0 bits (61), Expect = 2.6
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 5/19 (26%)
Query: 23 DRVVIEEYL-----SVFVL 36
VV+EEYL +V L
Sbjct: 175 GEVVVEEYLEGEEATVLAL 193
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 27.1 bits (60), Expect = 2.6
Identities = 4/48 (8%), Positives = 13/48 (27%), Gaps = 1/48 (2%)
Query: 85 REYRAVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSYLLPKYEKL 132
+ + L + + + + L + Y P ++
Sbjct: 691 TSS-PALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKPVIDRQ 737
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 27.1 bits (60), Expect = 2.7
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 35 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTM 94
+ L TL L N ++++ + + + M L LD + N + + T
Sbjct: 343 NCGHLTELETLILQMNQLKELSKIAEMTTQM-KSLQQLD--ISQNSVSYDEKKGDCSWT- 398
Query: 95 IPQLVTLD 102
L++L+
Sbjct: 399 -KSLLSLN 405
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal
binding; HET: ANP; 2.10A {Bacillus subtilis} PDB:
2xd4_A*
Length = 422
Score = 27.0 bits (61), Expect = 2.8
Identities = 8/19 (42%), Positives = 9/19 (47%), Gaps = 5/19 (26%)
Query: 23 DRVVIEEYL-----SVFVL 36
VVIEEYL S+
Sbjct: 180 ASVVIEEYLSGEEFSLMAF 198
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 26.9 bits (59), Expect = 2.9
Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 79 NPIEKIREYRAVVSTMIPQLVTLDSVFIL-PSEKQETNALNAEIRSYLLPKYEKLEA 134
+R++ +++ L L ++ + K + LN+ IR + +
Sbjct: 230 TGDTALRDFMVNYFSIVKSLDDLFENRVMAFTNKS-VDKLNSIIRKKIFETDKDFIV 285
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine
synthesis, enzyme, protein-ATP complex, structural GE
structural genomics consortium, SGC; HET: ATP; 2.45A
{Homo sapiens}
Length = 452
Score = 26.7 bits (60), Expect = 3.0
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 5/19 (26%)
Query: 23 DRVVIEEYL-----SVFVL 36
+ +VIEE L S
Sbjct: 207 ETIVIEELLDGEEVSCLCF 225
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 26.5 bits (59), Expect = 3.5
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 29 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPI 81
L F + +NSL+ L N I ++ + L L+ L N
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKK--QELQHFPSSLAFLN--LTQNDF 555
Score = 25.4 bits (56), Expect = 8.5
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L+ L L I+ I + ++ L TL L GNPI+ +
Sbjct: 48 FFSFPELQVLDLSRCEIQTIED--GAYQSL-SHLSTLI--LTGNPIQSL 91
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 26.2 bits (58), Expect = 5.7
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 8/54 (14%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L+ + + L L+ N + K+ + P L L+ N + +I
Sbjct: 97 LTNLDVTPLTKLTYLNCDTNKLTKL------DVSQNPLLTYLN--CARNTLTEI 142
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex;
2.3A {Homo sapiens} SCOP: a.118.1.19
Length = 321
Score = 25.3 bits (55), Expect = 9.2
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 39 VNSLRT-----LSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREY--RAVV 91
+ S+RT L L + + + + V +P L+ + Y + RE + +
Sbjct: 39 IRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTM 98
Query: 92 STMIPQL 98
+ ++ +L
Sbjct: 99 AIIVNKL 105
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 25.3 bits (56), Expect = 9.7
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 31 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV-LYGNPIEKI 84
L + + + +L TL + N + +A+ + QLV L + L N ++ +
Sbjct: 76 LPAGIFKELKNLETLWVTDNKL------QALPIGVFDQLVNLAELRLDRNQLKSL 124
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.361
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,188,587
Number of extensions: 122762
Number of successful extensions: 704
Number of sequences better than 10.0: 1
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 332
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)