RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4164
(147 letters)
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 48.6 bits (115), Expect = 1e-08
Identities = 24/26 (92%), Positives = 25/26 (96%)
Query: 2 SYMLGHLHNGWQVDQAILSEEDRVVI 27
SYML HLHNGWQVDQAILSEEDRVV+
Sbjct: 1 SYMLPHLHNGWQVDQAILSEEDRVVV 26
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 37.4 bits (86), Expect = 1e-04
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 43 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLD 102
+ L L N +++ + +VS P+LV L+ L GN + + + ++ M+P + ++
Sbjct: 68 QELLLCNNRLQQSAAIQPLVS--CPRLVLLN--LQGNSLCQEEGIQERLAEMLPSVSSIL 123
Query: 103 S 103
+
Sbjct: 124 T 124
Score = 37.0 bits (85), Expect = 2e-04
Identities = 8/48 (16%), Positives = 24/48 (50%)
Query: 27 IEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDS 74
+++ ++ L L L+L GN + + + ++ M+P + ++ +
Sbjct: 77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 124
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 32.5 bits (73), Expect = 0.008
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 34 FVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIRE----YRA 89
++++ +L+ L+L GN ++ RE I L + L GN + Y +
Sbjct: 85 SIVQKAPNLKILNLSGNELKSERE-----LDKIKGLKLEELWLDGNSLSDTFRDQSTYIS 139
Query: 90 VVSTMIPQLVTLDSVFILP 108
+ P+L+ LD + P
Sbjct: 140 AIRERFPKLLRLDGHELPP 158
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 31.1 bits (69), Expect = 0.028
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 76 LYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNAL 117
+ NP+ + YR V +PQ+ LD + E+QE +
Sbjct: 119 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKM 160
Score = 28.4 bits (62), Expect = 0.23
Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 6/67 (8%)
Query: 42 LRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTL 101
R L L G I I + + Q +D N I K+ + + +
Sbjct: 20 DRELDLRGYKIPVIEN----LGATLDQFDAID--FSDNEIRKLDGFPLLRRLKTLLVNNN 73
Query: 102 DSVFILP 108
I
Sbjct: 74 RICRIGE 80
Score = 23.7 bits (50), Expect = 7.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 47 LYGNPIEKIREYRAVVSTMIPQLVTLD 73
+ NP+ + YR V +PQ+ LD
Sbjct: 119 ILRNPVTNKKHYRLYVIYKVPQVRVLD 145
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 31.3 bits (69), Expect = 0.034
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 16/62 (25%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVT 100
SL L++ N + ++ + P+L L N + ++ E + L
Sbjct: 285 SLEELNVSNNKLIEL-------PALPPRLERLI--ASFNHLAEVPE-------LPQNLKQ 328
Query: 101 LD 102
L
Sbjct: 329 LH 330
Score = 30.9 bits (68), Expect = 0.052
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 9/44 (20%)
Query: 41 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
L L N + ++ E + L L + NP+ +
Sbjct: 305 RLERLIASFNHLAEVPE-------LPQNLKQLH--VEYNPLREF 339
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 29.7 bits (65), Expect = 0.10
Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 22/116 (18%)
Query: 1 MSYMLGHLHNGWQVDQAILSEEDRVVIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRA 60
+ L ++ + I + + L ++ L L L GNP+
Sbjct: 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND----- 155
Query: 61 VVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNA 116
EYR V +P L LD + + E+++ N
Sbjct: 156 -----------------YKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQANV 194
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 29.9 bits (65), Expect = 0.11
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 35 VLRRVNSLRTLSLYGNPI--EKIREYRAVVSTMIPQLVTLDSVLYGNPI-EKIREYRAVV 91
L +SLR L L N + I + V L L LY E++ + +
Sbjct: 392 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV--LYDIYWSEEMEDRLQAL 449
Query: 92 STMIPQLVTL 101
P L +
Sbjct: 450 EKDKPSLRVI 459
Score = 26.9 bits (57), Expect = 1.0
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 35 VLRRVNSLRTLSLYGNPI-EKIREYRAVVSTMIPQLVTLDSVLYGNPI 81
+L + + + L + E + + + P L L+ L N +
Sbjct: 22 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN--LRSNEL 67
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 29.6 bits (65), Expect = 0.12
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 40 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV-LYGNPIE 82
++ + L+ N I I + + V L+ NP++
Sbjct: 242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285
Score = 25.0 bits (53), Expect = 5.0
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 36 LRRVNSLRTLSLYGNPIE 53
+ S +SL+ NP++
Sbjct: 268 NTKKASYSGVSLFSNPVQ 285
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 28.7 bits (62), Expect = 0.23
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 41 SLRTLSLYGNPI--EKIREYRAVVSTMIPQLVTLDSVLYGNPIEK 83
L+TL L N I + +R + V+ +P L+ L+ L GN +
Sbjct: 274 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE--LNGNRFSE 316
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 27.2 bits (58), Expect = 0.86
Identities = 8/73 (10%), Positives = 17/73 (23%), Gaps = 3/73 (4%)
Query: 1 MSYMLGHLHNGWQVDQAILSEEDRVVIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRA 60
+ + + + Q E L V + L + I + Y
Sbjct: 162 KNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY-- 219
Query: 61 VVSTMIPQLVTLD 73
+ +L
Sbjct: 220 -GLENLKKLRARS 231
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 26.5 bits (57), Expect = 1.2
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 73
L + L+ L L N I +R + L L+
Sbjct: 174 LAGLTKLQNLYLSKNHISDLRALAG-----LKNLDVLE 206
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 26.5 bits (57), Expect = 1.4
Identities = 7/67 (10%), Positives = 18/67 (26%), Gaps = 12/67 (17%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVLYGNPIEKIREYRAVVSTMI 95
+ + L+ L N + + + + L N I + +
Sbjct: 325 VSSLTKLQRLFFANNKVSDVSSLAN-----LTNINWLS--AGHNQISDLTPLAN-----L 372
Query: 96 PQLVTLD 102
++ L
Sbjct: 373 TRITQLG 379
Score = 24.6 bits (52), Expect = 5.7
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 11/47 (23%)
Query: 40 NSLRTLSLYGNPIEKIR--EYRAVVSTMIPQLVTLDSVLYGNPIEKI 84
+ + TL I+ I EY + L ++ N + I
Sbjct: 44 DQVTTLQADRLGIKSIDGVEY-------LNNLTQIN--FSNNQLTDI 81
>d1g5ga1 f.12.1.1 (A:33-66,A:224-454) Head and neck region of the
ectodomain of NDV fusion glycoprotein {Newcastle disease
virus [TaxId: 11176]}
Length = 265
Score = 24.9 bits (54), Expect = 4.9
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 18/98 (18%)
Query: 49 GNPIEK---IREYRAVVSTMIPQLVT--------LDSVLY-----GNPIE-KIREYRAVV 91
+P I+ + + L+T L S++ GNPI + +
Sbjct: 37 TSPALTQLTIQALYNLAGGNMDYLLTKLGVGNNQLSSLISSGLITGNPILYDSQTQLLGI 96
Query: 92 STMIPQLVTLDSVFILPSEKQETNALNAEIRSYLLPKY 129
+P + L+++ E + + L+PK
Sbjct: 97 QVTLPSVGNLNNMRATYLETLSVSTTKGFASA-LVPKV 133
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 24.2 bits (51), Expect = 7.6
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 5/38 (13%)
Query: 36 LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 73
L + +L + L N I + L +
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPLAN-----TSNLFIVT 223
>d2fx0a2 a.121.1.1 (A:77-198) Hemolysin II regulatory protein,
HlyIIR {Bacillus cereus [TaxId: 1396]}
Length = 122
Score = 23.7 bits (51), Expect = 8.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 50 NPIEKIREYRAVVSTMI---PQLVTL---DSVLYGNPIEKIREY 87
NPI +REY V +T I P++ TL + + +EKI+ Y
Sbjct: 2 NPINALREYLTVFTTHIKENPEIGTLAYEEIIKESARLEKIKPY 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.361
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 515,621
Number of extensions: 22098
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 28
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.0 bits)