BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4165
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 88/199 (44%), Gaps = 30/199 (15%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A + + + M G + V +G G + +F A + R +++IDE DA +
Sbjct: 54 LLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARA-RAPCIVYIDEIDAVGK 112
Query: 60 KRS------SETISESLRATLNAFLYRT-GEQSDKFMLVLAS-NTPQQFDWAV--NDRLD 109
KRS S T E TLN L G + ++VLAS N D A+ RLD
Sbjct: 113 KRSTTMSGFSNTEEEQ---TLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLD 169
Query: 110 EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGR 169
V LPTL ER + + L ++ T ++A +T G SG
Sbjct: 170 RHVFIDLPTLQERREIFEQHLKSLKLTQSS-------------TFYSQRLAELTPGFSGA 216
Query: 170 EIAKLGVAWQASAYASEDG 188
+IA + +A+ +A+ +G
Sbjct: 217 DIAN--ICNEAALHAAREG 233
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 26/211 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A + + + ++G D M G + + +F+ A + ++FIDE DA R
Sbjct: 60 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAP-CIIFIDEIDAVGR 118
Query: 60 KRSSETIS--ESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
+R + + TLN L E ++ +++ A+N P D A+ R D V
Sbjct: 119 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVV 178
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
LP + RE++++++ RR+ +AP D + + IA T G SG ++A
Sbjct: 179 VGLPDVRGREQILKVHM------------RRVPLAP-DIDA--AIIARGTPGFSGADLAN 223
Query: 174 LGVAWQASAYASEDGVLTEAMV-MSKVEDSI 203
L +A+ +A+ +MV K +D I
Sbjct: 224 L--VNEAALFAARGNKRVVSMVEFEKAKDKI 252
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 18/128 (14%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYR---TGEQSDKFMLVLASNTPQQFDWAV 104
++FIDE D+ RS E SE+ R FL + G +D +++ A+N P D A+
Sbjct: 230 IIFIDEIDSLCGSRS-ENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAI 288
Query: 105 NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE 164
R ++ + PLP + R + RL+ G + + D+ L K T+
Sbjct: 289 RRRFEKRIYIPLPEAHARAAMFRLHL----------GSTQNSLTEADFQELGRK----TD 334
Query: 165 GLSGREIA 172
G SG +I+
Sbjct: 335 GYSGADIS 342
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYR----TGEQSDKFMLVLASNTPQQFDWA 103
V+FIDE D+ L +R ES R FL + T D+ ++V A+N PQ+ D A
Sbjct: 179 VIFIDEIDSLLSQRGDGE-HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEA 237
Query: 104 VNDRLDEMVEFPLPTLNERERLV 126
RL + + PLP + R+++V
Sbjct: 238 ARRRLVKRLYIPLPEASARKQIV 260
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 18/128 (14%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYR---TGEQSDKFMLVLASNTPQQFDWAV 104
++FIDE DA R E SE+ R L + G S +++ A+N P Q D A+
Sbjct: 122 IIFIDEVDALTGTRG-EGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAI 180
Query: 105 NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE 164
R + + PLP L R + + G + DY +L +TE
Sbjct: 181 RRRFERRIYIPLPDLAARTTMFEINV----------GDTPCVLTKEDYRTL----GAMTE 226
Query: 165 GLSGREIA 172
G SG +IA
Sbjct: 227 GYSGSDIA 234
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 18/128 (14%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYR---TGEQSDKFMLVLASNTPQQFDWAV 104
++FIDE D+ RS E SE+ R FL + G +D +++ A+N P D A+
Sbjct: 108 IIFIDEIDSLCGSRS-ENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAI 166
Query: 105 NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE 164
R ++ + PLP + R + +L+ G + + D+ L K T+
Sbjct: 167 RRRFEKRIYIPLPEPHARAAMFKLHL----------GTTQNSLTEADFRELGRK----TD 212
Query: 165 GLSGREIA 172
G SG +I+
Sbjct: 213 GYSGADIS 220
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM--GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFL 58
+ AK +A+ SG+++ + G ++ M G S A+ +VF A +S V+F DE DA
Sbjct: 59 LLAKAVANESGLNFISVKGPELLNMYVGESE-RAVRQVFQRAKNSAP-CVIFFDEVDALC 116
Query: 59 RKRSSETISESLRATLNAFLYRTG-EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVEFP 115
+RS S+R G E + ++ A+N P D A+ RLD+ +
Sbjct: 117 PRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVG 176
Query: 116 LPTLNER 122
LP +R
Sbjct: 177 LPPPADR 183
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 34/218 (15%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ A+ +AHH+ + ++G + V G + ++F A ++ F+DE D+
Sbjct: 197 LLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSII-FMDEIDSIGS 255
Query: 60 KR---SSETISESLRATLNAFLYRTG-EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
R S SE R L G E S +++A+N D A+ R+D +E
Sbjct: 256 TRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIE 315
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
FP P++ R ++R++ K L K+A G SG ++
Sbjct: 316 FPPPSVAARAEILRIHSRKMNLTRGIN---------------LRKVAEKMNGCSGADVK- 359
Query: 174 LGVAWQASAYA---------SEDGVLTEAMVMSKVEDS 202
GV +A YA ED L VM+K +++
Sbjct: 360 -GVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQET 396
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 18/128 (14%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYR---TGEQSDKFMLVLASNTPQQFDWAV 104
++FID+ DA R E SE+ R L + G S +++ A+N P Q D A+
Sbjct: 146 IIFIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAI 204
Query: 105 NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE 164
R + + PLP L R + + P+ K DY +L + +TE
Sbjct: 205 RRRFERRIYIPLPDLAARTTMFEINVGD---TPSVLTKE-------DYRTLGA----MTE 250
Query: 165 GLSGREIA 172
G SG +IA
Sbjct: 251 GYSGSDIA 258
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 18/128 (14%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYR---TGEQSDKFMLVLASNTPQQFDWAV 104
++FID+ DA R E SE+ R L + G S +++ A+N P Q D A+
Sbjct: 131 IIFIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAI 189
Query: 105 NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE 164
R + + PLP L R + + G + DY +L + +TE
Sbjct: 190 RRRFERRIYIPLPDLAARTTMFEINV----------GDTPCVLTKEDYRTLGA----MTE 235
Query: 165 GLSGREIA 172
G SG +IA
Sbjct: 236 GYSGSDIA 243
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 18/128 (14%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYR---TGEQSDKFMLVLASNTPQQFDWAV 104
++FID+ DA R E SE+ R L + G S +++ A+N P Q D A+
Sbjct: 113 IIFIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAI 171
Query: 105 NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE 164
R + + PLP L R + + G + DY +L +TE
Sbjct: 172 RRRFERRIYIPLPDLAARTTMFEINV----------GDTPCVLTKEDYRTL----GAMTE 217
Query: 165 GLSGREIA 172
G SG +IA
Sbjct: 218 GYSGSDIA 225
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 2 FAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
A+ +A + + + +G D M G + +F+ A ++FIDE DA RK
Sbjct: 65 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP-CIVFIDEIDAVGRK 123
Query: 61 RSSET--ISESLRATLNAFLYRT-GEQSDKFMLVL-ASNTPQQFDWAV--NDRLDEMVEF 114
R S ++ TLN L G + D ++V+ A+N P D A+ R D +
Sbjct: 124 RGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAI 183
Query: 115 PLPTLNERERLVRLY 129
P + RE+++R++
Sbjct: 184 DAPDVKGREQILRIH 198
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 2 FAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
A+ +A + + + +G D M G + +F+ A ++FIDE DA RK
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP-CIVFIDEIDAVGRK 147
Query: 61 RSSET--ISESLRATLNAFLYRT-GEQSDKFMLVL-ASNTPQQFDWAV--NDRLDEMVEF 114
R S ++ TLN L G + D ++V+ A+N P D A+ R D +
Sbjct: 148 RGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAI 207
Query: 115 PLPTLNERERLVRLY 129
P + RE+++R++
Sbjct: 208 DAPDVKGREQILRIH 222
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 2 FAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
A+ +A + + + +G D M G + +F+ A +V FIDE DA RK
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV-FIDEIDAVGRK 147
Query: 61 RSSET--ISESLRATLNAFLYRT-GEQSDKFMLVL-ASNTPQQFDWAV--NDRLDEMVEF 114
R S ++ TLN L G + D ++V+ A+N P D A+ R D +
Sbjct: 148 RGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAI 207
Query: 115 PLPTLNERERLVRLY 129
P + RE+++R++
Sbjct: 208 DAPDVKGREQILRIH 222
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 2 FAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
A+ +A + + + +G D M G + +F+ A +V FIDE DA RK
Sbjct: 80 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV-FIDEIDAVGRK 138
Query: 61 RSSET--ISESLRATLNAFLYRT-GEQSDKFMLVL-ASNTPQQFDWAV--NDRLDEMVEF 114
R S ++ TLN L G + D ++V+ A+N P D A+ R D +
Sbjct: 139 RGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAI 198
Query: 115 PLPTLNERERLVRLY 129
P + RE+++R++
Sbjct: 199 DAPDVKGREQILRIH 213
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 17/103 (16%)
Query: 33 IHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS--ESLRATLNAFLYRTGEQSDKF-- 88
I ++F +A + ++F+DE DA +R SE S ++ TL L Q D F
Sbjct: 263 IREMFAYAKE-HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT----QMDGFDN 317
Query: 89 ----MLVLASNTPQQFDWAV--NDRLDEMVEFPLPTLNERERL 125
+++A+N P D A+ RLD VE PLP NE RL
Sbjct: 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLP--NEAGRL 358
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM--GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFL 58
+ AK +A+ ++ + G ++ M G S + ++FD A + VLF DE D+
Sbjct: 64 LLAKAIANECQANFISIKGPELLTMWFGESEAN-VREIFDKARQA-APCVLFFDELDSIA 121
Query: 59 RKRSSETISESLRA--TLNAFLYRTGEQSDK--FMLVLASNTPQQFDWAV--NDRLDEMV 112
+ R A +N L S K ++ A+N P D A+ RLD+++
Sbjct: 122 KARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 181
Query: 113 EFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIA 172
PLP +E+ R+ L K L+ +P +A +T G SG ++
Sbjct: 182 YIPLP--DEKSRVAIL-------------KANLRKSPVAKDVDLEFLAKMTNGFSGADLT 226
Query: 173 KL 174
++
Sbjct: 227 EI 228
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM--GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFL 58
+ AK +A+ ++ + G ++ M G S + ++FD A + VLF DE D+
Sbjct: 526 LLAKAIANECQANFISIKGPELLTMWFGESEAN-VREIFDKARQAAP-CVLFFDELDSIA 583
Query: 59 RKRSSETISESLRA--TLNAFLYRTGEQSDK--FMLVLASNTPQQFDWAV--NDRLDEMV 112
+ R A +N L S K ++ A+N P D A+ RLD+++
Sbjct: 584 KARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643
Query: 113 EFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIA 172
PLP +E+ R+ L K L+ +P +A +T G SG ++
Sbjct: 644 YIPLP--DEKSRVAIL-------------KANLRKSPVAKDVDLEFLAKMTNGFSGADLT 688
Query: 173 KL 174
++
Sbjct: 689 EI 690
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 24/229 (10%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDV-APMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ A+ +A+ +G + ++ G ++ + + + + K F+ A + ++ FIDE DA
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAII-FIDELDAIAP 311
Query: 60 KRSSETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFP 115
KR +T E R ++ L +Q +++ A+N P D A+ R D V+
Sbjct: 312 KR-EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Query: 116 LPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLG 175
+P R +++++ + +K+A D L ++A+ T G G ++A L
Sbjct: 371 IPDATGRLEILQIH------------TKNMKLA--DDVDL-EQVANETHGHVGADLAALC 415
Query: 176 --VAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESF 222
A QA + L + + ++V +S+ RW Q +P +
Sbjct: 416 SEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM--GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFL 58
+ AK +A+ ++ + G ++ M G S + ++FD A + VLF DE D+
Sbjct: 526 LLAKAIANECQANFISIKGPELLTMWFGESEAN-VREIFDKARQAAP-CVLFFDELDSIA 583
Query: 59 RKRSSETISESLRA--TLNAFLYRTGEQSDK--FMLVLASNTPQQFDWAV--NDRLDEMV 112
+ R A +N L S K ++ A+N P D A+ RLD+++
Sbjct: 584 KARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643
Query: 113 EFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIA 172
PLP +E+ R+ L K L+ +P +A +T G SG ++
Sbjct: 644 YIPLP--DEKSRVAIL-------------KANLRKSPVAKDVDLEFLAKMTNGFSGADLT 688
Query: 173 KL 174
++
Sbjct: 689 EI 690
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 24/229 (10%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDV-APMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ A+ +A+ +G + ++ G ++ + + + + K F+ A + ++ FIDE DA
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAII-FIDELDAIAP 311
Query: 60 KRSSETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFP 115
KR +T E R ++ L +Q +++ A+N P D A+ R D V+
Sbjct: 312 KR-EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Query: 116 LPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLG 175
+P R +++++ + +K+A D L ++A+ T G G ++A L
Sbjct: 371 IPDATGRLEILQIH------------TKNMKLA--DDVDL-EQVANETHGHVGADLAALC 415
Query: 176 --VAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESF 222
A QA + L + + ++V +S+ RW Q +P +
Sbjct: 416 SEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 24/229 (10%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDV-APMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ A+ +A+ +G + ++ G ++ + + + + K F+ A + ++ FIDE DA
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAII-FIDELDAIAP 311
Query: 60 KRSSETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFP 115
KR +T E R ++ L +Q +++ A+N P D A+ R D V+
Sbjct: 312 KR-EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Query: 116 LPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLG 175
+P R +++++ + +K+A D L ++A+ T G G ++A L
Sbjct: 371 IPDATGRLEILQIH------------TKNMKLA--DDVDL-EQVANETHGHVGADLAALC 415
Query: 176 --VAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESF 222
A QA + L + + ++V +S+ RW Q +P +
Sbjct: 416 SEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 24/229 (10%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDV-APMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ A+ +A+ +G + ++ G ++ + + + + K F+ A + ++ FIDE DA
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAII-FIDELDAIAP 311
Query: 60 KRSSETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFP 115
KR +T E R ++ L +Q +++ A+N P D A+ R D V+
Sbjct: 312 KR-EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Query: 116 LPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLG 175
+P R +++++ + +K+A D L ++A+ T G G ++A L
Sbjct: 371 IPDATGRLEILQIH------------TKNMKLA--DDVDL-EQVANETHGHVGADLAALC 415
Query: 176 --VAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESF 222
A QA + L + + ++V +S+ RW Q +P +
Sbjct: 416 SEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 24/229 (10%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDV-APMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ A+ +A+ +G + ++ G ++ + + + + K F+ A + ++ FIDE DA
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAII-FIDELDAIAP 311
Query: 60 KRSSETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFP 115
KR +T E R ++ L +Q +++ A+N P D A+ R D V+
Sbjct: 312 KR-EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Query: 116 LPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLG 175
+P R +++++ + +K+A D L ++A+ T G G ++A L
Sbjct: 371 IPDATGRLEILQIH------------TKNMKLA--DDVDL-EQVANETHGHVGADLAALC 415
Query: 176 --VAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESF 222
A QA + L + + ++V +S+ RW Q +P +
Sbjct: 416 SEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ A+ +A+ + + + G + V G + ++F+ A + +K ++F DE DA
Sbjct: 258 LCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMART-KKACIIFFDEIDAVGG 316
Query: 60 KRSSETI---SESLRATLNAFLYRTG-EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
R + +E R L G + ++ A+N P D A+ R+D VE
Sbjct: 317 ARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVE 376
Query: 114 FPLPTLNERERLVRLY 129
F LP L R + R++
Sbjct: 377 FSLPDLEGRANIFRIH 392
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 48 VLFIDEADAFLRKRSSETIS---ESLRATLNAFLYRTGEQSDKFMLVLA-SNTPQQFDWA 103
++FIDE DA KR S E R L G SD + VLA +N D A
Sbjct: 277 IIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPA 336
Query: 104 V--NDRLDEMVEFPLPTLNERERLVRLY 129
+ + RLD +EFPLP+ + R ++++++
Sbjct: 337 LLRSGRLDRKIEFPLPSEDSRAQILQIH 364
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 18/132 (13%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYRTG----EQSDKFMLVLASNTPQQFDWA 103
++FIDE D+ L +RSS S R + G D+ +++ A+N PQ+ D A
Sbjct: 116 IIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEA 175
Query: 104 VNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT 163
R + V LP RE L+ K QG +P D +L ++A +T
Sbjct: 176 ALRRFTKRVYVSLPDEQTRELLLNRLLQK-------QG------SPLDTEAL-RRLAKIT 221
Query: 164 EGLSGREIAKLG 175
+G SG ++ L
Sbjct: 222 DGYSGSDLTALA 233
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQS---DKFMLVLASNTPQQFDWAV 104
++FID+ D+ L +R S R + G QS D+ +++ A+N PQ+ D AV
Sbjct: 210 IIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAV 269
Query: 105 NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE 164
R + V LP NE RL+ L QG +P L +++A +T+
Sbjct: 270 LRRFIKRVYVSLP--NEETRLLLLKNLL-----CKQG------SPLTQKEL-AQLARMTD 315
Query: 165 GLSGREIAKL 174
G SG ++ L
Sbjct: 316 GYSGSDLTAL 325
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 67/178 (37%), Gaps = 23/178 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A + + + G + V G + + +F A ++ FIDE DA
Sbjct: 66 LLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSII-FIDEIDAIAA 124
Query: 60 KRSSETIS---ESLRATLNAFLYRTG-EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
KR+ E R + G + ++ A+N P D A+ R D ++E
Sbjct: 125 KRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIE 184
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREI 171
P P R +++++ K L +IA +TEG G E+
Sbjct: 185 VPAPDEKGRLEILKIHTRKMNLAEDVN---------------LEEIAKMTEGCVGAEL 227
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDV-APMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ A+ +A+ +G + ++ G ++ + + + + K F+ A + ++ FIDE DA
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAII-FIDELDAIAP 311
Query: 60 KRSSETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFP 115
KR +T E R ++ L +Q +++ A+N P D A+ R D V+
Sbjct: 312 KR-EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Query: 116 LPTLNERERLVRLY 129
+P R +++++
Sbjct: 371 IPDATGRLEILQIH 384
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 15/150 (10%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
M K +A+ + + + G + V G + VF A + ++ FIDE D+
Sbjct: 221 MLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSII-FIDEVDSIAT 279
Query: 60 KR-SSETIS--ESLRATLNAFLYRTG-EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
KR ++T S E R + G +QS +++A+N D A+ RLD +E
Sbjct: 280 KRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIE 339
Query: 114 FPLPTLNERERLVRLYF----DKFVLQPAA 139
FP + RER RL F K L P A
Sbjct: 340 FP-SLRDRRER--RLIFGTIASKMSLAPEA 366
>pdb|3CDZ|B Chain B, Crystal Structure Of Human Factor Viii
Length = 684
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 91 VLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKR 143
+ A +T + F W D L M+ + T R++ LY +F++ + GK+
Sbjct: 411 INAWSTKEPFSWIKVDLLAPMIIHGIKTQGARQKFSSLYISQFIIMYSLDGKK 463
>pdb|2R7E|B Chain B, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 770
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 91 VLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKR 143
+ A +T + F W D L M+ + T R++ LY +F++ + GK+
Sbjct: 497 INAWSTKEPFSWIKVDLLAPMIIHGIKTQGARQKFSSLYISQFIIMYSLDGKK 549
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSG------VTAIHKVFDW-ASSSRKGLVLFIDE 53
+ A+ LA H + AI + G G +T + + DW ++KG+V FIDE
Sbjct: 87 LMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIV-FIDE 145
Query: 54 ADAFLRKRSSETIS 67
D R + +I+
Sbjct: 146 IDKISRLSENRSIT 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.129 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,705,000
Number of Sequences: 62578
Number of extensions: 245531
Number of successful extensions: 762
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 35
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)