BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4165
(242 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NVR9|ATAD3_XENTR ATPase family AAA domain-containing protein 3 OS=Xenopus tropicalis
GN=atad3 PE=2 SV=1
Length = 594
Score = 358 bits (918), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 160/212 (75%), Positives = 189/212 (89%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HKVFDWA +S++GL+LF+DEADAFLRK
Sbjct: 356 LFAKKLAMHSGMDYAIMTGGDVAPMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRK 415
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RS+E ISE LRATLNAFLYRTGEQS+KFMLVLASN P+QFDWA+NDR+DE+V F LP L
Sbjct: 416 RSTEKISEDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLE 475
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVRLYFDK+VLQPA++GK+RLKVA FDY CS +A +TEG+SGREI+KLGVAWQA
Sbjct: 476 ERERLVRLYFDKYVLQPASEGKQRLKVAQFDYGKKCSDLAQLTEGMSGREISKLGVAWQA 535
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW 212
+AYASEDG+L EAM+ ++V D+IR H+ K+ W
Sbjct: 536 AAYASEDGILNEAMIDARVADAIRQHQQKMEW 567
>sp|Q58E76|ATD3A_XENLA ATPase family AAA domain-containing protein 3-A OS=Xenopus laevis
GN=atad3-a PE=2 SV=1
Length = 593
Score = 358 bits (918), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 160/212 (75%), Positives = 191/212 (90%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HKVFDWA +S++GL+LF+DEADAFLRK
Sbjct: 356 LFAKKLAMHSGMDYAIMTGGDVAPMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRK 415
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RS+E ISE LRATLNAFLYRTGEQS+KFMLVLASN P+QFDWA+NDR+DE+V F LP L
Sbjct: 416 RSTEKISEDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLE 475
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVRLYFDK+VLQPA++GK+RLKVA FDY CS+++ +TEG+SGREI+KLGVAWQA
Sbjct: 476 ERERLVRLYFDKYVLQPASEGKQRLKVAQFDYGKKCSELSKLTEGMSGREISKLGVAWQA 535
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW 212
+AYASEDG+LTEAM+ ++V D+IR H+ K+ W
Sbjct: 536 AAYASEDGILTEAMIDARVADAIRQHQQKMAW 567
>sp|Q6PAX2|ATD3B_XENLA ATPase family AAA domain-containing protein 3-B OS=Xenopus laevis
GN=atad3-b PE=2 SV=1
Length = 593
Score = 356 bits (913), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 160/212 (75%), Positives = 190/212 (89%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HS MDYAIMTGGDVAPMG GVTA+HKVFDWA +S++GL+LF+DEADAFLRK
Sbjct: 356 LFAKKLAMHSSMDYAIMTGGDVAPMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRK 415
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RS+E ISE LRATLNAFLYRTGEQS+KFMLVLASN P+QFDWA+NDR+DE+V F LP L
Sbjct: 416 RSTEKISEDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLE 475
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVRLYFDK+VLQPA++GK+RLKVA FDY CS++A +TEG+SGREI+KLGVAWQA
Sbjct: 476 ERERLVRLYFDKYVLQPASEGKQRLKVAQFDYGKKCSELATLTEGMSGREISKLGVAWQA 535
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW 212
+AYASEDG+LTEAM+ ++V D+IR H+ K+ W
Sbjct: 536 AAYASEDGILTEAMIDARVADAIRQHQQKMEW 567
>sp|A7YWC4|ATAD3_BOVIN ATPase family AAA domain-containing protein 3 OS=Bos taurus
GN=ATAD3 PE=2 SV=1
Length = 586
Score = 345 bits (886), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 155/212 (73%), Positives = 188/212 (88%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HKVFDWAS+SR+GL+LF+DEADAFLRK
Sbjct: 359 LFAKKLALHSGMDYAIMTGGDVAPMGRDGVTAMHKVFDWASTSRRGLLLFVDEADAFLRK 418
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRATLNAFL+RTG+ S KFMLVLASN P+QFDWA+NDR+DEMV F LP
Sbjct: 419 RATEKISEDLRATLNAFLHRTGQHSSKFMLVLASNQPEQFDWAINDRIDEMVSFELPQRE 478
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVR+YFDK+VL+PA +GK+RLK+A FDY CS+IA +TEG+SGREI++L VAWQA
Sbjct: 479 ERERLVRMYFDKYVLKPATEGKQRLKLAQFDYGKKCSEIAQLTEGMSGREISQLAVAWQA 538
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW 212
AYASEDGVLTEAM+ ++V+D+I+ H+ K++W
Sbjct: 539 MAYASEDGVLTEAMMDARVQDAIQQHRQKMQW 570
>sp|Q925I1|ATAD3_MOUSE ATPase family AAA domain-containing protein 3 OS=Mus musculus
GN=Atad3 PE=1 SV=1
Length = 591
Score = 343 bits (881), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 154/212 (72%), Positives = 188/212 (88%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HKVFDWAS+SR+GL+LF+DEADAFLRK
Sbjct: 359 LFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKVFDWASTSRRGLLLFVDEADAFLRK 418
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRATLNAFL+RTG+ S KFMLVLASN P+QFDWA+NDR+DEMV F LP
Sbjct: 419 RATEKISEDLRATLNAFLHRTGQHSSKFMLVLASNQPEQFDWAINDRIDEMVCFALPQRE 478
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVR+YFDK+VL+PA +GK+RLKVA FDY CS++A +TEG+SGREIA+L VAWQA
Sbjct: 479 ERERLVRMYFDKYVLKPATEGKQRLKVAQFDYGKKCSEVAQLTEGMSGREIAQLAVAWQA 538
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW 212
AY+SEDGVLTEAM+ ++V+D+++ H+ K++W
Sbjct: 539 MAYSSEDGVLTEAMMDARVQDAVQQHQQKMQW 570
>sp|Q3KRE0|ATAD3_RAT ATPase family AAA domain-containing protein 3 OS=Rattus norvegicus
GN=Atad3 PE=1 SV=1
Length = 591
Score = 343 bits (879), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 159/232 (68%), Positives = 197/232 (84%), Gaps = 5/232 (2%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HKVFDWAS+SR+GL+LF+DEADAFLRK
Sbjct: 359 LFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKVFDWASTSRRGLLLFVDEADAFLRK 418
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRATLNAFL+RTG+ S+KFMLVLASN P+QFDWA+NDR+DEMV F LP
Sbjct: 419 RATEKISEDLRATLNAFLHRTGQHSNKFMLVLASNQPEQFDWAINDRIDEMVCFALPQRE 478
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVR+YFDK+VL+PA +GK+RLKVA FDY CS++A +T G+SGREIA+L VAWQA
Sbjct: 479 ERERLVRMYFDKYVLKPATEGKQRLKVAQFDYGKKCSEVAQLTAGMSGREIAQLAVAWQA 538
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGVDKSSPSH 232
AY+SEDGVLTEAM+ ++V+D+++ H+ K++W + E P+S + S P H
Sbjct: 539 MAYSSEDGVLTEAMMDARVQDAVQQHQQKMQW-LKVERPDS----EASKPPH 585
>sp|Q9NVI7|ATD3A_HUMAN ATPase family AAA domain-containing protein 3A OS=Homo sapiens
GN=ATAD3A PE=1 SV=2
Length = 634
Score = 340 bits (873), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 151/212 (71%), Positives = 189/212 (89%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HK+FDWA++SR+GL+LF+DEADAFLRK
Sbjct: 408 LFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFVDEADAFLRK 467
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRATLNAFLYRTG+ S+KFMLVLASN P+QFDWA+NDR++EMV F LP
Sbjct: 468 RATEKISEDLRATLNAFLYRTGQHSNKFMLVLASNQPEQFDWAINDRINEMVHFDLPGQE 527
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVR+YFDK+VL+PA +GK+RLK+A FDY CS++A +TEG+SGREIA+L V+WQA
Sbjct: 528 ERERLVRMYFDKYVLKPATEGKQRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQA 587
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW 212
+AYASEDGVLTEAM+ ++V+D+++ H+ K+ W
Sbjct: 588 TAYASEDGVLTEAMMDTRVQDAVQQHQQKMCW 619
>sp|Q5T9A4|ATD3B_HUMAN ATPase family AAA domain-containing protein 3B OS=Homo sapiens
GN=ATAD3B PE=1 SV=1
Length = 648
Score = 318 bits (815), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 145/212 (68%), Positives = 182/212 (85%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HK+FDWA++SR+GL+LF+DEADAFLRK
Sbjct: 360 LFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFMDEADAFLRK 419
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E IS+ LRATLNAFLY G+ S+KFMLVLASN P+QFD A+N R+D MV F LP
Sbjct: 420 RATEEISKDLRATLNAFLYHMGQHSNKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQE 479
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVRL+FD VL+PA +GKRRLK+A FDY CS++A +TEG+SGREIA+L V+WQA
Sbjct: 480 ERERLVRLHFDNCVLKPATEGKRRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQA 539
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW 212
+AYAS+DGVLTEAM+ + V+D+++ ++ K+RW
Sbjct: 540 TAYASKDGVLTEAMMDACVQDAVQQYRQKMRW 571
>sp|Q5T2N8|ATD3C_HUMAN ATPase family AAA domain-containing protein 3C OS=Homo sapiens
GN=ATAD3C PE=2 SV=2
Length = 411
Score = 313 bits (801), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 144/221 (65%), Positives = 184/221 (83%), Gaps = 1/221 (0%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HK+FDWA++SR+GL+LF+DEADAFLRK
Sbjct: 185 LFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFVDEADAFLRK 244
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRATLNAFLYRTG+ S+KFML+LAS P+QFDWA+N +D MV F LP
Sbjct: 245 RATEKISEDLRATLNAFLYRTGQHSNKFMLILASCHPEQFDWAINACIDVMVHFDLPGQE 304
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ER RLVR+Y +++VL+PA +GKRRLK+A FDY C +IA +TEG+S R+IA+L V+WQA
Sbjct: 305 ERARLVRMYLNEYVLKPATEGKRRLKLAQFDYGRKCLEIARLTEGMSCRKIAQLAVSWQA 364
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW-QSEQESPE 220
+AYAS+DGVLTEAM+ + V+D ++ H+ +RW + E+ PE
Sbjct: 365 TAYASKDGVLTEAMMDACVQDFVQQHQQMMRWLKGERPGPE 405
>sp|Q20748|ATAD3_CAEEL ATPase family AAA domain-containing protein 3 OS=Caenorhabditis
elegans GN=atad-3 PE=3 SV=2
Length = 595
Score = 290 bits (742), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 131/214 (61%), Positives = 169/214 (78%), Gaps = 2/214 (0%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAK LA HSG+DYA++TGGD+AP+G GV+AIHKVFDWAS SRKGL++FIDEADAFL+K
Sbjct: 357 LFAKSLAQHSGLDYAVLTGGDIAPLGRDGVSAIHKVFDWASKSRKGLIVFIDEADAFLQK 416
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RS +SE RA LNAFL+RTGEQS KFMLV+ASN P+QFDWAVNDR D++VEF LP +
Sbjct: 417 RSKNGMSEDTRAALNAFLFRTGEQSRKFMLVVASNQPEQFDWAVNDRFDQLVEFTLPGME 476
Query: 121 ERERLVRLYFDKFVLQPAAQGKR--RLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAW 178
ERER++ YF++ ++ PA G R RLK+ FD+ + C+++A T G+SGRE++KL + W
Sbjct: 477 ERERILLQYFNEHIVTPATSGSRSQRLKLDNFDWVAKCNEVAKKTSGMSGRELSKLVIGW 536
Query: 179 QASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW 212
QASAYASE GVLTEA+V D++ H+ K+ W
Sbjct: 537 QASAYASETGVLTEAIVDRNTADAMVQHEHKMEW 570
>sp|P42811|PRS2_METTM Putative 26S protease regulatory subunit homolog MTBMA_c13930
OS=Methanothermobacter marburgensis (strain DSM 2133 /
14651 / NBRC 100331 / OCM 82 / Marburg) GN=MTBMA_c13930
PE=3 SV=1
Length = 372
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 19/174 (10%)
Query: 1 MFAKKLAHHSGMD-YAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
M AK LA+ + Y I + G IH++++ AS + V+FIDE DA
Sbjct: 172 MLAKSLANELRVPLYLIKATSLIGEHVGDGARQIHELYELASKTAPS-VIFIDEMDAIGL 230
Query: 60 KRSSETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLP 117
R +++ + +NA L Q+ + + A+N P+ D A+ R +E +EF LP
Sbjct: 231 DRRFQSLRGDVSEVVNALLTEMDGINQNWGVVTIGATNNPELLDNAIRSRFEEEIEFKLP 290
Query: 118 TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREI 171
+ER R+ +K++ + P D K+ +T+G+SGR+I
Sbjct: 291 GDDER----RMMLEKYI-----------ETMPLDVDFSVDKLVKLTKGMSGRDI 329
>sp|A9KIG5|FTSH_CLOPH ATP-dependent zinc metalloprotease FtsH OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=ftsH PE=3 SV=1
Length = 577
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 8/139 (5%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A +G+ + M+G D M G + I +F+ A S K V+FIDE DA +
Sbjct: 194 LIAKAIATEAGVPFYAMSGSDFVQMYVGVGASRIRTLFNKAKKSEKA-VIFIDEIDAIGK 252
Query: 60 KR--SSETISESLRATLNAFLYR-TGEQSDKFMLVL-ASNTPQQFDWAV--NDRLDEMVE 113
KR S+ ++ TLNA L +G +K ++V+ A+N D A+ R D +E
Sbjct: 253 KRARSTSASNDERDQTLNALLTEMSGFHENKGIVVIGATNRLDTLDEALLRPGRFDRQIE 312
Query: 114 FPLPTLNERERLVRLYFDK 132
LP + R+++++LY DK
Sbjct: 313 VGLPDILARKKILKLYGDK 331
>sp|C0ZPK5|FTSH_RHOE4 ATP-dependent zinc metalloprotease FtsH OS=Rhodococcus erythropolis
(strain PR4 / NBRC 100887) GN=ftsH PE=3 SV=1
Length = 854
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 35/230 (15%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ A+ +A +G+ + ++G D M G + + +F+ A + ++F+DE DA R
Sbjct: 215 LLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKQNSP-CIIFVDEIDAVGR 273
Query: 60 KRSS---------ETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAV--NDRL 108
+R + E L ++ F RTG +L+ A+N P D A+ R
Sbjct: 274 QRGAGLGGGHDEREQTLNQLLVEMDGFGDRTG-----IILIAATNRPDILDPALLRPGRF 328
Query: 109 DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSG 168
D + P L R ++R++ +QGK P D + +A T G+SG
Sbjct: 329 DRQIPVGAPDLAGRRAILRVH---------SQGK------PIDPNADLEGLAKRTVGMSG 373
Query: 169 REIAKLGVAWQASAYASEDG-VLTEAMVMSKVEDSIRAHKMKVRWQSEQE 217
++A + + A A E+G V+TEA + V+ + + K R SE E
Sbjct: 374 ADLANV-INEAALLTARENGTVITEASLEESVDRVVGGPRRKSRIISEHE 422
>sp|O27092|PRS2_METTH Putative 26S protease regulatory subunit homolog MTH_1011
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=MTH_1011 PE=3 SV=1
Length = 372
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 19/174 (10%)
Query: 1 MFAKKLAHHSGMD-YAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
M AK LA+ + Y I + G IH++++ AS + V+FIDE DA
Sbjct: 172 MLAKSLANELKVPLYLIKATSLIGEHVGDGARQIHELYELASKTAPS-VIFIDEMDAIGL 230
Query: 60 KRSSETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLP 117
R +++ + +NA L Q+ + + A+N P+ D A+ R +E +EF LP
Sbjct: 231 DRRYQSLRGDVSEVVNALLTEMDGINQNWGVVTIGATNNPELLDKAIRSRFEEEIEFKLP 290
Query: 118 TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREI 171
ER +L +K++ + P K+ +T +SGR+I
Sbjct: 291 DDEER----KLMLEKYI-----------ETMPLKVDFPVDKLVKLTREMSGRDI 329
>sp|P32795|YME1_YEAST Mitochondrial inner membrane i-AAA protease supercomplex subunit
YME1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=YME1 PE=1 SV=1
Length = 747
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 26/200 (13%)
Query: 1 MFAKKLAHHSGMDYAIMTGG--DVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFL 58
+ A+ A +G+D+ M+G D +G G I +F A S R ++FIDE DA
Sbjct: 329 LLARATAGEAGVDFFFMSGSEFDEVYVGV-GAKRIRDLFAQARS-RAPAIIFIDELDAIG 386
Query: 59 RKRSSETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEF 114
KR+ + + + + TLN L Q+ +++ A+N P+ D A+ R D++V
Sbjct: 387 GKRNPKDQAYA-KQTLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNV 445
Query: 115 PLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKL 174
LP + R +++ + K L V P + IA T GLSG E+A L
Sbjct: 446 DLPDVRGRADILKHHMKKITLAD--------NVDP-------TIIARGTPGLSGAELANL 490
Query: 175 GVAWQASAYASEDGVLTEAM 194
QA+ YA + ++ M
Sbjct: 491 --VNQAAVYACQKNAVSVDM 508
>sp|B2UE66|FTSH_RALPJ ATP-dependent zinc metalloprotease FtsH OS=Ralstonia pickettii
(strain 12J) GN=ftsH PE=3 SV=1
Length = 714
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 23/181 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A +G+ + M+G D M G + +F A + + ++FIDE DA +
Sbjct: 288 LLAKAVAGEAGVPFFSMSGSDFVEMFVGVGAARVRDLFKQAET-KAPCIIFIDELDALGK 346
Query: 60 KRSSETI--SESLRATLNAFLYRT-GEQSDKFMLVLA-SNTPQQFDWAV--NDRLDEMVE 113
R+ + +E TLN L G S+K ++++A +N P+ D A+ R D V
Sbjct: 347 TRALNAVGGNEEREQTLNQLLVEMDGFDSNKGVIIMAATNRPEILDPALLRPGRFDRHVA 406
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
P L RE++++++ VL P +K+A T G +G ++A
Sbjct: 407 LDRPDLKGREQILKVHVKGVVLAPEVD---------------LTKLAGRTPGFAGADLAN 451
Query: 174 L 174
L
Sbjct: 452 L 452
>sp|Q8TI88|PAN_METAC Proteasome-activating nucleotidase OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=pan
PE=3 SV=2
Length = 421
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 26/200 (13%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +AH + + + G + V G + ++F+ A ++ FIDE D+
Sbjct: 208 LLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSII-FIDELDSIAA 266
Query: 60 KRSSETIS---ESLRATLNAFLYRTG-EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
+R +ET E R + G ++ ++ A+N P D A+ R D +V
Sbjct: 267 RRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVH 326
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
P+P + R ++++++ K L D+ K+A VTEG+SG ++
Sbjct: 327 VPMPGIEARGKILKIHCGKMTL-----------AGDIDF----KKLAKVTEGMSGADLK- 370
Query: 174 LGVAWQASAYA-SEDGVLTE 192
+A +A +A +D L E
Sbjct: 371 -AIATEAGMFAVRKDKALVE 389
>sp|Q9V287|PAN_PYRAB Proteasome-activating nucleotidase OS=Pyrococcus abyssi (strain GE5
/ Orsay) GN=pan PE=3 SV=2
Length = 396
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 30/193 (15%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK LAH + + G + V G +H++F+ A + ++FIDE DA
Sbjct: 186 LMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKE-KAPTIIFIDEIDAIGA 244
Query: 60 KRSSETISESLRATLNAFLYRTGEQSDKF------MLVLASNTPQQFDWAV--NDRLDEM 111
KR ET +N L + + D F ++ A+N P D A+ R D +
Sbjct: 245 KRMDETTGGE--REVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRL 302
Query: 112 VEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREI 171
+E PLP R +++++ RR+K+ D IA +TEG SG ++
Sbjct: 303 IEVPLPDFEGRLEILKVH------------TRRMKLKNVD----LRVIAEITEGASGADL 346
Query: 172 AKLGVAWQASAYA 184
+A +A +A
Sbjct: 347 K--AIATEAGMFA 357
>sp|O57940|PAN_PYRHO Proteasome-activating nucleotidase OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=pan PE=3 SV=1
Length = 399
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 30/193 (15%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK LAH + + G + V G +H++F+ A + ++FIDE DA
Sbjct: 189 LMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKE-KAPTIIFIDEIDAIGA 247
Query: 60 KRSSETISESLRATLNAFLYRTGEQSDKF------MLVLASNTPQQFDWAV--NDRLDEM 111
KR ET +N L + + D F ++ A+N P D A+ R D +
Sbjct: 248 KRMDETTGGE--REVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRL 305
Query: 112 VEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREI 171
+E PLP R +++++ RR+K+ D + IA +TEG SG ++
Sbjct: 306 IEVPLPDFEGRLEILKVH------------TRRMKLKGVDLRA----IAEMTEGASGADL 349
Query: 172 AKLGVAWQASAYA 184
+A +A +A
Sbjct: 350 K--AIATEAGMFA 360
>sp|B8H444|FTSH_CAUCN ATP-dependent zinc metalloprotease FtsH OS=Caulobacter crescentus
(strain NA1000 / CB15N) GN=ftsH PE=2 SV=1
Length = 626
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 44/249 (17%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ A+ +A +G+ + ++G D M G + + +F+ A + ++FIDE DA R
Sbjct: 199 LIARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAP-CIIFIDEIDAVGR 257
Query: 60 KRSSETI--SESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
R + ++ TLN L E ++ +L+ A+N P D A+ R D V
Sbjct: 258 HRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDPALLRPGRFDRQVV 317
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
P P + RE+++R++ +K P +A T G SG ++A
Sbjct: 318 VPNPDVAGREKIIRVH---------------MKNVPLAADVDVKTLARGTPGFSGADLAN 362
Query: 174 LGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQS-EQESPESFMGVDKSSPSH 232
L + EA +M+ R ++ V Q EQ + MG ++ S +
Sbjct: 363 L---------------VNEAALMAA-----RKNRRMVTMQDFEQAKDKVMMGAERRSMAM 402
Query: 233 NQIQSKARA 241
N+ + K A
Sbjct: 403 NEEEKKLTA 411
>sp|Q58889|PRS2_METJA Putative 26S protease regulatory subunit homolog MJ1494
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1494
PE=3 SV=2
Length = 371
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 18/141 (12%)
Query: 33 IHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG--EQSDKFML 90
I +++ AS S +V FIDE DA R +++ + +NA L ++++ +
Sbjct: 202 IRELYQRASESAPCIV-FIDELDAIGLSREYQSLRGDVSEVVNALLTELDGIKENEGVVT 260
Query: 91 VLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPF 150
+ A+N P D A+ R +E +EF LP ER +++ LY K L A K
Sbjct: 261 IAATNNPAMLDPAIRSRFEEEIEFKLPNDEERLKIMELYAKKMPLPVKANLK-------- 312
Query: 151 DYTSLCSKIAHVTEGLSGREI 171
+ T+G SGR+I
Sbjct: 313 -------EFVEKTKGFSGRDI 326
>sp|B6YXR2|PAN_THEON Proteasome-activating nucleotidase OS=Thermococcus onnurineus
(strain NA1) GN=pan PE=3 SV=1
Length = 398
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 26/194 (13%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK LAH + + G + V G +H++F+ A ++ FIDE DA
Sbjct: 188 LMAKALAHEVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPAII-FIDEIDAIGA 246
Query: 60 KRSSETIS---ESLRATLNAFLYRTG-EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
KR ET E R + G + S ++ A+N P D A+ R D ++E
Sbjct: 247 KRMDETTGGEREVNRTLMQLLAEMDGFDPSGNVKIIAATNRPDILDPALLRPGRFDRLIE 306
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
PLP R +++++ +R+ + D IA +TEG SG ++
Sbjct: 307 VPLPNFKSRLEILKIH------------TKRMNLKGVD----LRIIAEMTEGASGADLK- 349
Query: 174 LGVAWQASAYASED 187
+ +A +A D
Sbjct: 350 -AITMEAGMFAIRD 362
>sp|Q8PY58|PAN_METMA Proteasome-activating nucleotidase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=pan PE=3 SV=1
Length = 420
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 25/191 (13%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +AH + + + G + V G + ++F+ A ++ FIDE D+
Sbjct: 208 LLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSII-FIDELDSIAA 266
Query: 60 KRSSETIS---ESLRATLNAFLYRTG-EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
+R +ET E R + G ++ ++ A+N P D A+ R D +V
Sbjct: 267 RRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVH 326
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
P+P + R ++++++ +K L D+ K+A TEG+SG ++
Sbjct: 327 VPMPGIEARGKILKIHCEKMTL-----------AEDIDF----KKLAKATEGMSGADLK- 370
Query: 174 LGVAWQASAYA 184
+A +A +A
Sbjct: 371 -AIATEAGMFA 380
>sp|C5A6P8|PAN_THEGJ Proteasome-activating nucleotidase OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1
Length = 397
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 30/196 (15%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A+H + + G + V G +H++F+ A + ++FIDE DA
Sbjct: 187 LMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFEMAKE-KAPTIIFIDEIDAIGA 245
Query: 60 KRSSETISESLRATLNAFLYRTGEQSDKF------MLVLASNTPQQFDWAV--NDRLDEM 111
KR ET +N L + + D F ++ A+N P D A+ R D +
Sbjct: 246 KRMDETTGGE--REVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRL 303
Query: 112 VEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREI 171
+E PLP R +++++ R++ + D S IA +TEG SG ++
Sbjct: 304 IEVPLPDFRGRLEILKVH------------TRKMNLRNVD----LSIIADITEGASGADL 347
Query: 172 AKLGVAWQASAYASED 187
+A +A +A D
Sbjct: 348 K--AIATEAGMFAIRD 361
>sp|Q9VQN8|FIGL1_DROME Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2
SV=2
Length = 523
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 17/130 (13%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVL---ASNTPQQFDWAV 104
++FIDE D+ L KRS+ +LR ++ G S++ + VL A+N PQ+ D AV
Sbjct: 345 IIFIDEVDSLLSKRSANENESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAV 404
Query: 105 NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE 164
R + PLPT R++++ +K + Q K L V ++A +T+
Sbjct: 405 RRRFVRRLYVPLPTREARQKII----EKLI----HQVKHNLDV------RQVIELAELTD 450
Query: 165 GLSGREIAKL 174
G SG ++ L
Sbjct: 451 GYSGADVDTL 460
>sp|O61577|KTNA1_STRPU Katanin p60 ATPase-containing subunit A1 OS=Strongylocentrotus
purpuratus GN=KATNA1 PE=1 SV=1
Length = 516
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYR--------TGEQSDKFMLVLA-SNTPQ 98
+FIDE D+ KR + + E+ R + L + GE+S K ++VLA +N P
Sbjct: 329 TIFIDEIDSICSKRGTGSEHEASRRVKSELLIQMDGVSGPSAGEESSKMVMVLAATNFPW 388
Query: 99 QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVL 135
D A+ RL++ + PLP ++ RE+L+R+ + L
Sbjct: 389 DIDEALRRRLEKRIYIPLPEIDGREQLLRINLKEVPL 425
>sp|Q8U4H3|PAN_PYRFU Proteasome-activating nucleotidase OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pan PE=3 SV=1
Length = 396
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 30/193 (15%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +AH + + G + V G +H++F+ A + ++FIDE DA
Sbjct: 186 LMAKAIAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKE-KAPTIIFIDEIDAIGA 244
Query: 60 KRSSETISESLRATLNAFLYRTGEQSDKF------MLVLASNTPQQFDWAV--NDRLDEM 111
KR ET +N L + + D F ++ A+N P D A+ R D +
Sbjct: 245 KRLDETTGGE--REVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRL 302
Query: 112 VEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREI 171
+E PLP R +++++ RR+K+ D IA +TEG SG ++
Sbjct: 303 IEVPLPDFEGRLEILKVH------------TRRMKLRGVD----LRLIAELTEGASGADL 346
Query: 172 AKLGVAWQASAYA 184
+A +A +A
Sbjct: 347 K--AIATEAGMFA 357
>sp|Q5JHS5|PAN_PYRKO Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=pan PE=3
SV=1
Length = 397
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 30/196 (15%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A+H + + G + V G +H++F+ A + ++FIDE DA
Sbjct: 187 LMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFELAKE-KAPTIIFIDEIDAIGA 245
Query: 60 KRSSETISESLRATLNAFLYRTGEQSDKF------MLVLASNTPQQFDWAV--NDRLDEM 111
KR ET +N L + + D F ++ A+N P D A+ R D +
Sbjct: 246 KRMDETTGGE--REVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRL 303
Query: 112 VEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREI 171
+E PLP R +++++ K L+ L+V IA +TEG SG ++
Sbjct: 304 IEVPLPDYQGRLEILKVHTRKMNLKGVD-----LRV-----------IAEITEGASGADL 347
Query: 172 AKLGVAWQASAYASED 187
+A +A +A D
Sbjct: 348 K--AIATEAGMFAIRD 361
>sp|B4JII0|SPAST_DROGR Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1
Length = 782
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 18/131 (13%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYRTG----EQSDKFMLVLASNTPQQFDWA 103
++FIDE D+ L +RSS S R + G D+ +++ A+N PQ+ D A
Sbjct: 602 IIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEA 661
Query: 104 VNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT 163
R + V LP + RE L+ K QG +P D +L ++A +T
Sbjct: 662 ALRRFTKRVYVSLPDVQTRELLLNRLLQK-------QG------SPLDSDAL-GRLAKIT 707
Query: 164 EGLSGREIAKL 174
EG SG ++ L
Sbjct: 708 EGYSGSDLTAL 718
>sp|B4K799|SPAST_DROMO Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1
Length = 765
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 18/131 (13%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYRTG----EQSDKFMLVLASNTPQQFDWA 103
++FIDE D+ L +RSS S R + G + D+ +++ A+N PQ+ D A
Sbjct: 585 IIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEA 644
Query: 104 VNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT 163
R + V LP + RE L+ K QG +P D +L +++A +T
Sbjct: 645 ALRRFTKRVYVSLPEVQTRELLLSRLLQK-------QG------SPLDTEAL-ARLAKIT 690
Query: 164 EGLSGREIAKL 174
+G SG ++ L
Sbjct: 691 DGYSGSDLTAL 701
>sp|B4M0H8|SPAST_DROVI Spastin OS=Drosophila virilis GN=spas PE=3 SV=1
Length = 769
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 18/131 (13%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYRTG----EQSDKFMLVLASNTPQQFDWA 103
++FIDE D+ L +RSS S R + G + D+ +++ A+N PQ+ D A
Sbjct: 589 IIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEA 648
Query: 104 VNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT 163
R + V LP + RE L+ K QG +P D +L +++A +T
Sbjct: 649 ALRRFTKRVYVSLPGVQTRELLLSRLLQK-------QG------SPLDTEAL-ARLAKIT 694
Query: 164 EGLSGREIAKL 174
+G SG ++ L
Sbjct: 695 DGYSGSDLTAL 705
>sp|Q54PT2|VPS4_DICDI Vacuolar protein sorting-associated protein 4 OS=Dictyostelium
discoideum GN=vps4 PE=3 SV=1
Length = 444
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 19/145 (13%)
Query: 33 IHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR---TGEQSDKFM 89
+ ++F+ A + V+FIDE D+ R+ + SES R FL + G SD +
Sbjct: 216 VKQLFEMARE-KNNSVIFIDEVDSLCSSRNDQE-SESARRIKTEFLIQMNGVGNDSDGIL 273
Query: 90 LVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149
++ A+N P D A+ R ++ + LP R ++ +++ G +
Sbjct: 274 VLAATNIPWGLDLAIRRRFEKRIYIGLPEPQARAKMFQIHI----------GSTPNTLVQ 323
Query: 150 FDYTSLCSKIAHVTEGLSGREIAKL 174
DY K+A +TEG SG +I L
Sbjct: 324 ADY----KKLADLTEGYSGSDIGSL 344
>sp|Q7URM7|FTSH2_RHOBA ATP-dependent zinc metalloprotease FtsH 2 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH2 PE=3 SV=1
Length = 728
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 25/201 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A +G+ + ++G D M G + +F A + R ++FIDE DA +
Sbjct: 299 LLAKAIAGEAGVPFFSLSGSDFVEMFVGVGAARVRDMFTQAVN-RAPCIIFIDELDALGK 357
Query: 60 KRSSETIS--ESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
RS + + TLNA L + + ++V A+N P+ D A+ R D V
Sbjct: 358 SRSGSVVGGHDEREQTLNALLVEMDGFDSNSGVIVVAATNRPETLDPALLRPGRFDRHVL 417
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
P + RE ++ ++ +K D T IA +T G G ++A
Sbjct: 418 VDRPDVAGREEILAVH---------------VKNVKLDETVELKGIASITSGFVGADLAN 462
Query: 174 LGVAWQASAYASEDGVLTEAM 194
L +A+ A+ +G AM
Sbjct: 463 L--VNEAALLAARNGKPAVAM 481
>sp|Q9CD58|FTSH_MYCLE ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium leprae
(strain TN) GN=ftsH PE=3 SV=1
Length = 787
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 25/225 (11%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ A+ +A +G+ + ++G D M G + + +FD A + ++F+DE DA R
Sbjct: 211 LLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFDQAKQNSP-CIIFVDEIDAVGR 269
Query: 60 KRSSETIS--ESLRATLNAFLYRTGEQSDK--FMLVLASNTPQQFDWAV--NDRLDEMVE 113
+R + + TLN L D+ +L+ A+N P D A+ R D +
Sbjct: 270 QRGTGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIP 329
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
P L R ++R++ ++GK P + +A T G++G ++A
Sbjct: 330 VSNPDLAGRRAVLRVH---------SKGK------PIADDADLDGLAKRTVGMTGADLAN 374
Query: 174 LGVAWQASAYASEDG-VLTEAMVMSKVEDSIRAHKMKVRWQSEQE 217
+ V A A E+G V+T + V+ I + K R SEQE
Sbjct: 375 V-VNEAALLTARENGLVITGPALEEAVDRVIGGPRRKGRIISEQE 418
>sp|P54815|MSP1_CAEEL Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1
PE=3 SV=2
Length = 342
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 20/165 (12%)
Query: 48 VLFIDEADAFLRKRSSETISES--LRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVN 105
++FIDE D+FLR R S + ++A D+ +++ A+N P+ D A+
Sbjct: 179 IIFIDEIDSFLRDRQSHDHESTAMMKAQFMTLWDGFSSSGDQIIVMGATNRPRDVDAAIL 238
Query: 106 DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEG 165
R+ + P+P +R +++ + L+ + T +IA EG
Sbjct: 239 RRMTARFQVPVPNAKQRSQILNVI---------------LRNEKINNTVNLGEIAQAAEG 283
Query: 166 LSG---REIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHK 207
LSG +E+ +L + +A A + G + + + + + + HK
Sbjct: 284 LSGSDLKEVCRLALLARAKATVASGGSVNQLLPLEQSDFESAVHK 328
>sp|A6TSZ1|FTSH1_ALKMQ ATP-dependent zinc metalloprotease FtsH 1 OS=Alkaliphilus
metalliredigens (strain QYMF) GN=ftsH1 PE=3 SV=1
Length = 590
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 8/144 (5%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ A+ LA +G+++ ++G D V G I +F A K V+FIDE DA +
Sbjct: 203 LLARALASEAGVEFLAVSGSDFVQVYAGLGAGRIRNLFKKAKDKGK-CVIFIDEIDAIGK 261
Query: 60 KRSSETISESLRA--TLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
KR + S + TLNA L + S+ +++ A+N D A+ R D +E
Sbjct: 262 KRDRGGLGGSDESDRTLNALLTEMSGFKGSEGIIVMAATNRLDILDDALLRPGRFDRQIE 321
Query: 114 FPLPTLNERERLVRLYFDKFVLQP 137
LP L R+ +++LY + P
Sbjct: 322 IGLPDLKARQDILQLYTQNRPIDP 345
>sp|P0AAI4|FTSH_SHIFL ATP-dependent zinc metalloprotease FtsH OS=Shigella flexneri
GN=ftsH PE=3 SV=1
Length = 644
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 26/211 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A + + + ++G D M G + + +F+ A + ++FIDE DA R
Sbjct: 200 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAP-CIIFIDEIDAVGR 258
Query: 60 KRSSETIS--ESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
+R + + TLN L E ++ +++ A+N P D A+ R D V
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVV 318
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
LP + RE++++++ RR+ +AP ++ IA T G SG ++A
Sbjct: 319 VGLPDVRGREQILKVHM------------RRVPLAPDIDAAI---IARGTPGFSGADLAN 363
Query: 174 LGVAWQASAYASEDGVLTEAMV-MSKVEDSI 203
L +A+ +A+ +MV K +D I
Sbjct: 364 L--VNEAALFAARGNKRVVSMVEFEKAKDKI 392
>sp|P0AAI3|FTSH_ECOLI ATP-dependent zinc metalloprotease FtsH OS=Escherichia coli (strain
K12) GN=ftsH PE=1 SV=1
Length = 644
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 26/211 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A + + + ++G D M G + + +F+ A + ++FIDE DA R
Sbjct: 200 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAP-CIIFIDEIDAVGR 258
Query: 60 KRSSETIS--ESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
+R + + TLN L E ++ +++ A+N P D A+ R D V
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVV 318
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
LP + RE++++++ RR+ +AP ++ IA T G SG ++A
Sbjct: 319 VGLPDVRGREQILKVHM------------RRVPLAPDIDAAI---IARGTPGFSGADLAN 363
Query: 174 LGVAWQASAYASEDGVLTEAMV-MSKVEDSI 203
L +A+ +A+ +MV K +D I
Sbjct: 364 L--VNEAALFAARGNKRVVSMVEFEKAKDKI 392
>sp|Q8X9L0|FTSH_ECO57 ATP-dependent zinc metalloprotease FtsH OS=Escherichia coli O157:H7
GN=ftsH PE=3 SV=1
Length = 644
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 26/211 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A + + + ++G D M G + + +F+ A + ++FIDE DA R
Sbjct: 200 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAP-CIIFIDEIDAVGR 258
Query: 60 KRSSETIS--ESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
+R + + TLN L E ++ +++ A+N P D A+ R D V
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVV 318
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
LP + RE++++++ RR+ +AP ++ IA T G SG ++A
Sbjct: 319 VGLPDVRGREQILKVHM------------RRVPLAPDIDAAI---IARGTPGFSGADLAN 363
Query: 174 LGVAWQASAYASEDGVLTEAMV-MSKVEDSI 203
L +A+ +A+ +MV K +D I
Sbjct: 364 L--VNEAALFAARGNKRVVSMVEFEKAKDKI 392
>sp|B4NBP4|SPAST_DROWI Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1
Length = 777
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 18/131 (13%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYRTG----EQSDKFMLVLASNTPQQFDWA 103
++FIDE D+ L +RSS S R + G D+ +++ A+N PQ+ D A
Sbjct: 597 IIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEA 656
Query: 104 VNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT 163
R + V LP RE L+ K QG +P D +L ++A +T
Sbjct: 657 ALRRFTKRVYVSLPDEQTRELLLNRLLQK-------QG------SPLDTEAL-RRLAKIT 702
Query: 164 EGLSGREIAKL 174
EG SG ++ L
Sbjct: 703 EGYSGSDLTAL 713
>sp|Q9P7J5|YJNA_SCHPO Uncharacterized AAA domain-containing protein C24B10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC24B10.10c PE=3 SV=1
Length = 355
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 23/132 (17%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFL-----YRTGEQSDKFMLVLASNTPQQFDW 102
++FIDE D FLR+R T E++ F+ +G+ + +++ A+N P D
Sbjct: 187 IIFIDEIDTFLRQRQ-RTDHEAMAQIKAEFMSMWDGLLSGQS--RVLVLGATNRPADIDE 243
Query: 103 AVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHV 162
A+ R+ ++ PLP +R +++ LY K L+ A FD+ + +
Sbjct: 244 AIRRRMPKVFSIPLPNAEQRRKILELYLKKVPLE-----------ANFDWNG----VVNA 288
Query: 163 TEGLSGREIAKL 174
T GLSG I ++
Sbjct: 289 TAGLSGSYIKEV 300
>sp|P25694|CDC48_YEAST Cell division control protein 48 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC48 PE=1 SV=3
Length = 835
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 29/234 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM--GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFL 58
+ AK +A ++ + G ++ M G S + I +FD A ++ V+F+DE D+
Sbjct: 536 LLAKAVATEVSANFISVKGPELLSMWYGESE-SNIRDIFDKARAAAP-TVVFLDELDSIA 593
Query: 59 RKRSS---ETISESLRATLNAFLYRTGEQSDKFMLVL-ASNTPQQFDWAV--NDRLDEMV 112
+ R + S R G + K + V+ A+N P Q D A+ RLD+++
Sbjct: 594 KARGGSLGDAGGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPAILRPGRLDQLI 653
Query: 113 EFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIA 172
PLP N R ++ K L+P + + IA T+G SG ++
Sbjct: 654 YVPLPDENARLSILNAQLRKTPLEPGLE---------------LTAIAKATQGFSGADL- 697
Query: 173 KLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGVD 226
L + +A+ YA +D + EA + E ++ V E E VD
Sbjct: 698 -LYIVQRAAKYAIKDSI--EAHRQHEAEKEVKVEGEDVEMTDEGAKAEQEPEVD 748
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 5/133 (3%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDV-APMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ A+ +A+ +G + ++ G +V + M + + K F+ A + ++ FIDE D+
Sbjct: 263 LMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAII-FIDEIDSIAP 321
Query: 60 KRSSETISESLRATLNAFLYRTGEQSDKFMLVL-ASNTPQQFDWAVN--DRLDEMVEFPL 116
KR R G ++ ++V+ A+N P D A+ R D V+ +
Sbjct: 322 KRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGI 381
Query: 117 PTLNERERLVRLY 129
P R ++R++
Sbjct: 382 PDATGRLEVLRIH 394
>sp|P39925|AFG3_YEAST Mitochondrial respiratory chain complexes assembly protein AFG3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=AFG3 PE=1 SV=1
Length = 761
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 19/226 (8%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK A + + + ++G + M G + + +F A S ++ FIDE DA +
Sbjct: 336 LLAKATAGEANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSII-FIDEIDAIGK 394
Query: 60 KRSSETI----SESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEM 111
+R ++ ATLN L SD+ +++ +N P D A+ R D
Sbjct: 395 ERGKGGALGGANDEREATLNQLLVEMDGFTTSDQVVVLAGTNRPDVLDNALMRPGRFDRH 454
Query: 112 VEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREI 171
++ P +N R+++ ++ + L P D +L K+A +T G +G +I
Sbjct: 455 IQIDSPDVNGRQQIYLVHLKRLNLDPLLTD---------DMNNLSGKLATLTPGFTGADI 505
Query: 172 AKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQE 217
A A D +T +E I + K R S++E
Sbjct: 506 ANACNEAALIAARHNDPYITIHHFEQAIERVIAGLEKKTRVLSKEE 551
>sp|Q9UQ90|SPG7_HUMAN Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2
Length = 795
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 88/199 (44%), Gaps = 30/199 (15%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A + + + M G + V +G G + +F A + R +++IDE DA +
Sbjct: 357 LLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARA-RAPCIVYIDEIDAVGK 415
Query: 60 KRS------SETISESLRATLNAFLYRT-GEQSDKFMLVLAS-NTPQQFDWAV--NDRLD 109
KRS S T E TLN L G + ++VLAS N D A+ RLD
Sbjct: 416 KRSTTMSGFSNTEEEQ---TLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLD 472
Query: 110 EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGR 169
V LPTL ER + + L ++ T ++A +T G SG
Sbjct: 473 RHVFIDLPTLQERREIFEQHLKSLKLTQSS-------------TFYSQRLAELTPGFSGA 519
Query: 170 EIAKLGVAWQASAYASEDG 188
+IA + +A+ +A+ +G
Sbjct: 520 DIAN--ICNEAALHAAREG 536
>sp|Q3ULF4|SPG7_MOUSE Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1
Length = 781
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 90/200 (45%), Gaps = 32/200 (16%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A + + + M G + V +G G + +F A + R +++IDE DA +
Sbjct: 357 LLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARA-RAPCIVYIDEIDAVGK 415
Query: 60 KRS------SETISESLRATLNAFLYRT-GEQSDKFMLVLAS-NTPQQFDWAV--NDRLD 109
KRS S T E TLN L G + ++VLAS N D A+ RLD
Sbjct: 416 KRSTSMSGFSNTEEEQ---TLNQLLVEMDGMGTTDHVIVLASTNRADVLDNALMRPGRLD 472
Query: 110 EMVEFPLPTLNERERLVRLYFDKFVL-QPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSG 168
V LPTL ER + + L QP++ +RL A +T G SG
Sbjct: 473 RHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRL--------------AELTPGFSG 518
Query: 169 REIAKLGVAWQASAYASEDG 188
+IA + +A+ +A+ +G
Sbjct: 519 ADIAN--ICNEAALHAAREG 536
>sp|Q9ZEA2|FTSH_RICPR ATP-dependent zinc metalloprotease FtsH OS=Rickettsia prowazekii
(strain Madrid E) GN=ftsH PE=3 SV=1
Length = 637
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 23/181 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A + + + ++G D M G + + +F+ + ++FIDE DA R
Sbjct: 203 LLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAP-CIIFIDEIDAVGR 261
Query: 60 KRSSETI--SESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
R ++ TLN L E ++ +++ A+N P D A+ R D +
Sbjct: 262 HRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIA 321
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
P +N RE++++++ LK ++ T L IA T G SG E+A
Sbjct: 322 VANPDINGREQILKVH---------------LKKIKYNSTVLARIIARGTPGFSGAELAN 366
Query: 174 L 174
L
Sbjct: 367 L 367
>sp|Q92JJ9|FTSH_RICCN ATP-dependent zinc metalloprotease FtsH OS=Rickettsia conorii
(strain ATCC VR-613 / Malish 7) GN=ftsH PE=3 SV=1
Length = 637
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 23/181 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A + + + ++G D M G + + +F+ + ++FIDE DA R
Sbjct: 203 LLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAP-CIIFIDEIDAVGR 261
Query: 60 KRS--SETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
R ++ TLN L E ++ +++ A+N P D A+ R D +
Sbjct: 262 HRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIA 321
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
P +N RE++++++ LK ++ T L IA T G SG E+A
Sbjct: 322 VANPDINGREQILKVH---------------LKKIKYNSTVLARIIARGTPGFSGAELAN 366
Query: 174 L 174
L
Sbjct: 367 L 367
>sp|Q68XR9|FTSH_RICTY ATP-dependent zinc metalloprotease FtsH OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=ftsH PE=3 SV=1
Length = 637
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 23/181 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A + + + ++G D M G + + +F+ + ++FIDE DA R
Sbjct: 203 LLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAP-CIIFIDEIDAVGR 261
Query: 60 KRSSETI--SESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
R ++ TLN L E ++ +++ A+N P D A+ R D +
Sbjct: 262 HRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIA 321
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
P +N RE++++++ LK ++ T L IA T G SG E+A
Sbjct: 322 VANPDINGREQILKVH---------------LKKIKYNSTVLARIIARGTPGFSGAELAN 366
Query: 174 L 174
L
Sbjct: 367 L 367
>sp|C8W731|FTSH_ATOPD ATP-dependent zinc metalloprotease FtsH OS=Atopobium parvulum
(strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546)
GN=ftsH PE=3 SV=1
Length = 644
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 22/180 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A +G+ + + G + M G + +F A+ + ++FIDE DA +
Sbjct: 232 LIAKAVAGEAGVPFFQIAGSEFVEMFVGRGAAKVRDLFKQANE-KAPCIIFIDEIDAVGK 290
Query: 60 KRSSETISESLR-ATLNAFLYRT-GEQSDKFMLVLA-SNTPQQFDWAV--NDRLDEMVEF 114
+R + S R TLN L G + K ++VLA +N P+ D A+ R D +
Sbjct: 291 RRDASLNSNDEREQTLNQLLSEMDGFDNHKGIVVLAATNRPETLDKALLRPGRFDRRIPV 350
Query: 115 PLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKL 174
LP L RE +++++ + ++P S +A T G SG ++A +
Sbjct: 351 ELPDLKGREAVLQIHANDVKMEPGVD---------------LSIVAKSTPGASGADLANI 395
>sp|Q4UN68|FTSH_RICFE ATP-dependent zinc metalloprotease FtsH OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=ftsH PE=3 SV=1
Length = 635
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 23/181 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A + + + ++G D M G + + +F+ + ++FIDE DA R
Sbjct: 203 LLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAP-CIIFIDEIDAVGR 261
Query: 60 KRS--SETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
R ++ TLN L E ++ +++ A+N P D A+ R D +
Sbjct: 262 HRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIA 321
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
P +N RE++++++ LK ++ T L IA T G SG E+A
Sbjct: 322 VANPDINGREQILKVH---------------LKKIKYNSTVLARIIARGTPGFSGAELAN 366
Query: 174 L 174
L
Sbjct: 367 L 367
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.129 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,519,766
Number of Sequences: 539616
Number of extensions: 3176747
Number of successful extensions: 9247
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 370
Number of HSP's that attempted gapping in prelim test: 9049
Number of HSP's gapped (non-prelim): 438
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)