Query psy4165
Match_columns 242
No_of_seqs 196 out of 1632
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 18:33:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 3.5E-43 7.5E-48 298.7 18.0 191 1-207 200-397 (406)
2 KOG0734|consensus 100.0 1.5E-42 3.3E-47 306.3 14.5 209 1-228 352-567 (752)
3 KOG0730|consensus 100.0 1.3E-40 2.9E-45 300.8 16.3 186 1-205 483-677 (693)
4 KOG0738|consensus 100.0 6.6E-40 1.4E-44 280.7 15.5 188 1-204 260-471 (491)
5 KOG0733|consensus 100.0 5.7E-39 1.2E-43 287.4 16.1 189 1-205 560-772 (802)
6 KOG0733|consensus 100.0 1.3E-36 2.9E-41 272.3 15.3 161 1-178 238-407 (802)
7 KOG0731|consensus 100.0 3E-36 6.4E-41 279.4 16.1 215 1-230 359-581 (774)
8 KOG0736|consensus 100.0 1.9E-35 4.2E-40 270.4 16.9 187 1-203 720-933 (953)
9 COG0465 HflB ATP-dependent Zn 100.0 5.6E-36 1.2E-40 273.1 12.5 213 1-229 198-417 (596)
10 COG1223 Predicted ATPase (AAA+ 100.0 3.7E-35 8.1E-40 240.3 14.1 185 1-201 166-354 (368)
11 KOG0739|consensus 100.0 1.2E-35 2.7E-40 247.2 8.2 162 2-179 182-347 (439)
12 KOG0728|consensus 100.0 3.6E-34 7.8E-39 233.7 14.5 189 1-205 196-391 (404)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 1.9E-33 4E-38 255.3 20.2 190 1-205 274-466 (489)
14 KOG0737|consensus 100.0 9.2E-34 2E-38 242.2 16.2 161 1-178 142-307 (386)
15 PTZ00454 26S protease regulato 100.0 9.5E-32 2.1E-36 239.3 20.0 191 1-207 194-391 (398)
16 COG0464 SpoVK ATPases of the A 100.0 5.6E-32 1.2E-36 248.7 19.1 187 1-202 291-483 (494)
17 KOG0652|consensus 100.0 4.9E-32 1.1E-36 222.4 13.9 192 1-208 220-418 (424)
18 TIGR01243 CDC48 AAA family ATP 100.0 2.9E-31 6.2E-36 253.8 19.4 188 1-204 502-712 (733)
19 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.8E-31 3.9E-36 263.2 17.5 187 1-209 1645-1884(2281)
20 KOG0735|consensus 100.0 1.2E-31 2.7E-36 243.7 14.8 166 1-183 716-886 (952)
21 TIGR01241 FtsH_fam ATP-depende 100.0 1.7E-31 3.7E-36 245.3 15.2 189 1-205 103-298 (495)
22 KOG0740|consensus 100.0 1.4E-31 2.9E-36 235.7 12.6 187 1-203 201-405 (428)
23 PRK10733 hflB ATP-dependent me 100.0 4.5E-31 9.7E-36 248.4 15.3 189 1-205 200-395 (644)
24 KOG0726|consensus 100.0 8.4E-32 1.8E-36 223.8 9.0 189 1-205 234-429 (440)
25 KOG0727|consensus 100.0 7.1E-31 1.5E-35 214.7 13.1 189 1-205 204-399 (408)
26 PRK03992 proteasome-activating 100.0 4.9E-30 1.1E-34 228.8 19.7 191 1-207 180-377 (389)
27 CHL00176 ftsH cell division pr 100.0 2.1E-30 4.5E-35 242.0 17.4 192 1-208 231-429 (638)
28 KOG0729|consensus 100.0 1.7E-30 3.8E-35 213.9 12.2 195 1-211 226-427 (435)
29 PTZ00361 26 proteosome regulat 100.0 1.7E-29 3.7E-34 226.5 19.3 189 1-205 232-427 (438)
30 KOG0742|consensus 100.0 1.9E-28 4E-33 211.7 18.7 215 1-216 399-625 (630)
31 KOG0730|consensus 100.0 1.2E-28 2.6E-33 223.5 15.6 180 1-202 233-416 (693)
32 PLN00020 ribulose bisphosphate 100.0 9E-28 2E-32 207.5 17.2 157 1-176 163-345 (413)
33 KOG0651|consensus 100.0 3E-28 6.6E-33 203.9 10.0 187 1-205 181-376 (388)
34 TIGR01242 26Sp45 26S proteasom 100.0 9E-27 1.9E-31 206.5 19.2 186 1-202 171-363 (364)
35 KOG0741|consensus 99.9 6.7E-27 1.5E-31 207.3 9.1 192 1-203 271-491 (744)
36 TIGR03689 pup_AAA proteasome A 99.9 1.2E-25 2.7E-30 204.3 15.9 203 1-205 231-481 (512)
37 KOG0732|consensus 99.9 5.3E-24 1.1E-28 202.9 13.8 166 1-184 314-489 (1080)
38 TIGR01243 CDC48 AAA family ATP 99.9 3.7E-23 8.1E-28 198.1 19.3 186 1-203 227-436 (733)
39 KOG0736|consensus 99.8 2.8E-17 6E-22 151.8 16.3 199 2-217 447-676 (953)
40 PF00004 AAA: ATPase family as 99.8 2.2E-17 4.7E-22 125.0 13.1 114 2-116 14-132 (132)
41 KOG0735|consensus 99.7 3E-16 6.4E-21 144.1 18.3 194 2-210 447-656 (952)
42 KOG0744|consensus 99.7 1.5E-16 3.2E-21 134.7 14.0 202 2-206 193-418 (423)
43 CHL00181 cbbX CbbX; Provisiona 99.6 2.2E-14 4.8E-19 123.1 14.8 162 1-179 74-251 (287)
44 COG0464 SpoVK ATPases of the A 99.6 1.1E-13 2.5E-18 127.4 16.8 186 1-204 33-228 (494)
45 TIGR02639 ClpA ATP-dependent C 99.6 6.6E-14 1.4E-18 134.4 14.7 184 2-202 219-429 (731)
46 TIGR02880 cbbX_cfxQ probable R 99.5 2.4E-13 5.2E-18 116.7 15.0 126 1-133 73-211 (284)
47 TIGR02881 spore_V_K stage V sp 99.5 4.3E-13 9.4E-18 113.8 15.3 124 1-132 57-193 (261)
48 KOG0743|consensus 99.5 2.4E-13 5.1E-18 120.2 12.7 151 2-175 251-413 (457)
49 COG2256 MGS1 ATPase related to 99.5 4.8E-13 1E-17 116.6 12.4 197 1-231 63-266 (436)
50 PRK11034 clpA ATP-dependent Cl 99.5 1.6E-12 3.4E-17 124.3 16.1 183 2-201 223-432 (758)
51 TIGR00763 lon ATP-dependent pr 99.4 2.7E-12 5.8E-17 124.0 12.6 120 1-131 362-506 (775)
52 PRK00080 ruvB Holliday junctio 99.4 3.9E-11 8.5E-16 105.1 17.7 170 1-202 66-250 (328)
53 TIGR03345 VI_ClpV1 type VI sec 99.4 4.1E-11 8.9E-16 116.5 18.2 162 2-180 224-408 (852)
54 TIGR00635 ruvB Holliday juncti 99.3 1.1E-10 2.5E-15 101.0 18.0 169 1-201 45-228 (305)
55 PRK10865 protein disaggregatio 99.3 9.2E-12 2E-16 121.2 12.1 127 1-134 214-358 (857)
56 TIGR03346 chaperone_ClpB ATP-d 99.3 3E-11 6.6E-16 117.8 12.3 127 2-135 210-354 (852)
57 PRK13342 recombination factor 99.2 2.7E-09 5.9E-14 96.4 17.9 165 1-203 51-220 (413)
58 PRK14962 DNA polymerase III su 99.2 2E-09 4.3E-14 98.4 16.9 162 1-199 51-239 (472)
59 CHL00095 clpC Clp protease ATP 99.1 5.6E-10 1.2E-14 108.7 13.1 161 2-180 216-399 (821)
60 PRK14956 DNA polymerase III su 99.1 4.6E-09 9.9E-14 95.3 17.5 135 31-197 104-241 (484)
61 PF05496 RuvB_N: Holliday junc 99.1 1.1E-09 2.4E-14 89.8 12.2 141 1-176 65-223 (233)
62 PRK06645 DNA polymerase III su 99.1 6.6E-09 1.4E-13 95.5 18.6 140 29-198 109-252 (507)
63 PRK04132 replication factor C 99.1 2E-09 4.3E-14 103.7 15.1 145 2-182 582-736 (846)
64 PRK14961 DNA polymerase III su 99.1 8.5E-09 1.8E-13 91.6 17.7 137 31-199 102-241 (363)
65 PRK04195 replication factor C 99.1 5.8E-09 1.2E-13 96.0 16.9 162 1-198 54-221 (482)
66 TIGR00362 DnaA chromosomal rep 99.1 3.6E-09 7.8E-14 95.3 15.1 176 2-204 152-339 (405)
67 TIGR02928 orc1/cdc6 family rep 99.1 1.6E-08 3.4E-13 89.7 18.6 179 2-202 56-274 (365)
68 PRK00411 cdc6 cell division co 99.1 1.9E-08 4E-13 90.2 19.3 181 2-203 71-283 (394)
69 PRK14960 DNA polymerase III su 99.1 8.7E-09 1.9E-13 96.3 17.4 160 1-197 52-238 (702)
70 PRK07003 DNA polymerase III su 99.1 9.8E-09 2.1E-13 97.1 17.5 119 30-176 101-222 (830)
71 PRK00149 dnaA chromosomal repl 99.1 5.5E-09 1.2E-13 95.4 15.2 176 2-204 164-351 (450)
72 PRK12323 DNA polymerase III su 99.0 7.4E-09 1.6E-13 96.6 15.5 119 30-176 106-227 (700)
73 TIGR02397 dnaX_nterm DNA polym 99.0 1.8E-08 3.9E-13 89.0 17.0 137 30-198 99-238 (355)
74 PRK14958 DNA polymerase III su 99.0 1.2E-08 2.6E-13 94.2 16.2 160 2-198 54-240 (509)
75 TIGR02902 spore_lonB ATP-depen 99.0 9E-09 1.9E-13 95.7 15.0 98 88-202 235-332 (531)
76 PTZ00112 origin recognition co 99.0 2.2E-08 4.7E-13 95.7 17.2 151 29-203 852-1007(1164)
77 PRK05563 DNA polymerase III su 99.0 4.1E-08 8.9E-13 91.7 18.5 137 28-196 99-238 (559)
78 PRK06893 DNA replication initi 99.0 3.2E-08 7E-13 82.4 15.9 165 2-199 55-227 (229)
79 PRK07994 DNA polymerase III su 99.0 3.8E-08 8.2E-13 92.7 17.8 117 32-176 103-222 (647)
80 PRK14951 DNA polymerase III su 99.0 3.7E-08 8E-13 92.5 17.6 137 30-198 106-245 (618)
81 KOG2028|consensus 99.0 1.4E-08 3.1E-13 88.0 13.4 175 1-203 177-369 (554)
82 PRK10787 DNA-binding ATP-depen 99.0 1.1E-08 2.3E-13 98.8 13.7 159 2-177 365-550 (784)
83 PRK14086 dnaA chromosomal repl 99.0 3.8E-08 8.1E-13 91.8 16.6 176 2-204 330-517 (617)
84 PHA02544 44 clamp loader, smal 99.0 6E-08 1.3E-12 84.4 17.1 117 2-132 59-175 (316)
85 PRK14959 DNA polymerase III su 99.0 1.5E-08 3.3E-13 94.7 14.0 134 32-197 106-239 (624)
86 COG2255 RuvB Holliday junction 98.9 4.2E-08 9.1E-13 82.5 14.9 174 1-202 67-251 (332)
87 PRK08691 DNA polymerase III su 98.9 5E-08 1.1E-12 91.9 15.7 138 29-198 100-240 (709)
88 PRK07764 DNA polymerase III su 98.9 5.7E-08 1.2E-12 94.1 16.3 103 46-176 121-223 (824)
89 PLN03025 replication factor C 98.9 4.3E-08 9.3E-13 85.6 14.0 158 2-197 50-218 (319)
90 PRK14964 DNA polymerase III su 98.9 1.4E-07 2.9E-12 86.5 17.6 149 13-198 86-237 (491)
91 PRK14949 DNA polymerase III su 98.9 1E-07 2.2E-12 91.9 17.3 118 31-176 102-222 (944)
92 PRK14965 DNA polymerase III su 98.9 7.3E-08 1.6E-12 90.4 16.2 135 30-196 101-238 (576)
93 PRK14963 DNA polymerase III su 98.9 8.8E-08 1.9E-12 88.4 16.4 135 31-198 99-236 (504)
94 PRK13341 recombination factor 98.9 3.6E-08 7.8E-13 94.3 14.0 171 1-203 67-248 (725)
95 PRK14088 dnaA chromosomal repl 98.9 8.4E-08 1.8E-12 87.3 15.7 177 2-204 146-334 (440)
96 PRK12402 replication factor C 98.9 1.3E-07 2.7E-12 82.9 15.5 166 2-200 52-247 (337)
97 PRK12422 chromosomal replicati 98.9 1E-07 2.2E-12 86.8 15.2 178 2-204 157-345 (445)
98 PRK14957 DNA polymerase III su 98.9 2.6E-07 5.6E-12 85.7 18.2 134 32-197 103-239 (546)
99 PRK14969 DNA polymerase III su 98.8 1.1E-07 2.4E-12 88.3 15.8 137 30-198 101-240 (527)
100 PRK05896 DNA polymerase III su 98.8 1.4E-07 3.1E-12 87.8 16.4 135 31-197 102-239 (605)
101 KOG2004|consensus 98.8 5.7E-08 1.2E-12 90.5 13.5 127 2-132 454-598 (906)
102 PRK07940 DNA polymerase III su 98.8 5.9E-08 1.3E-12 86.9 13.3 111 31-173 100-213 (394)
103 PRK14970 DNA polymerase III su 98.8 4.9E-07 1.1E-11 80.4 18.5 165 2-198 55-229 (367)
104 TIGR03420 DnaA_homol_Hda DnaA 98.8 3E-07 6.5E-12 75.9 15.7 164 2-199 54-225 (226)
105 PRK06647 DNA polymerase III su 98.8 2.6E-07 5.6E-12 86.3 16.7 136 30-197 101-239 (563)
106 PRK14953 DNA polymerase III su 98.8 4.8E-07 1E-11 83.2 18.1 136 31-198 102-240 (486)
107 PRK05342 clpX ATP-dependent pr 98.8 7E-08 1.5E-12 86.8 12.3 169 1-176 123-372 (412)
108 PRK08451 DNA polymerase III su 98.8 6.9E-07 1.5E-11 82.6 18.5 134 31-196 100-236 (535)
109 PRK07133 DNA polymerase III su 98.8 5.8E-07 1.3E-11 85.4 18.4 136 30-197 100-238 (725)
110 PRK08084 DNA replication initi 98.8 3.6E-07 7.8E-12 76.4 15.3 130 47-199 99-233 (235)
111 PRK14952 DNA polymerase III su 98.8 4.7E-07 1E-11 84.7 17.6 136 30-196 100-238 (584)
112 TIGR00390 hslU ATP-dependent p 98.7 1.6E-07 3.5E-12 83.8 12.4 81 46-126 248-342 (441)
113 TIGR00382 clpX endopeptidase C 98.7 2.7E-07 5.8E-12 82.9 14.0 168 1-177 131-379 (413)
114 COG0466 Lon ATP-dependent Lon 98.7 6.5E-08 1.4E-12 90.2 10.3 126 2-131 366-509 (782)
115 PRK06305 DNA polymerase III su 98.7 7.4E-07 1.6E-11 81.3 17.0 122 45-198 121-242 (451)
116 PRK05201 hslU ATP-dependent pr 98.7 3.4E-07 7.3E-12 81.8 13.7 81 46-126 250-344 (443)
117 PRK14948 DNA polymerase III su 98.7 8.1E-07 1.8E-11 83.9 16.5 121 28-176 101-224 (620)
118 PRK14087 dnaA chromosomal repl 98.7 1.1E-06 2.3E-11 80.3 16.4 177 2-202 157-348 (450)
119 TIGR00678 holB DNA polymerase 98.7 5.7E-07 1.2E-11 72.5 13.0 86 31-129 79-167 (188)
120 PRK09111 DNA polymerase III su 98.7 1.6E-06 3.5E-11 81.5 17.6 138 30-199 114-254 (598)
121 PRK14954 DNA polymerase III su 98.6 1.8E-06 3.8E-11 81.4 16.8 138 31-198 110-253 (620)
122 PRK08903 DnaA regulatory inact 98.6 3.6E-06 7.9E-11 69.8 17.0 159 2-200 58-224 (227)
123 PRK14955 DNA polymerase III su 98.6 1.5E-06 3.3E-11 78.2 15.8 139 30-198 109-253 (397)
124 TIGR02640 gas_vesic_GvpN gas v 98.6 1.4E-06 3E-11 74.1 14.7 174 1-203 36-258 (262)
125 PRK11034 clpA ATP-dependent Cl 98.6 5.3E-07 1.1E-11 86.8 13.5 158 1-176 503-709 (758)
126 PRK08727 hypothetical protein; 98.6 3.1E-06 6.8E-11 70.7 16.4 165 2-200 57-229 (233)
127 PRK00440 rfc replication facto 98.6 2.3E-06 5E-11 74.3 15.8 160 2-199 54-223 (319)
128 TIGR02639 ClpA ATP-dependent C 98.6 1E-06 2.2E-11 85.2 14.5 156 1-176 499-705 (731)
129 PRK14971 DNA polymerase III su 98.6 3.7E-06 8E-11 79.5 17.9 119 30-176 103-224 (614)
130 PRK05642 DNA replication initi 98.6 2.7E-06 5.9E-11 71.1 15.1 164 2-199 61-232 (234)
131 PRK14950 DNA polymerase III su 98.5 7E-06 1.5E-10 77.4 17.4 135 31-197 103-240 (585)
132 COG0542 clpA ATP-binding subun 98.5 7.5E-07 1.6E-11 84.9 9.8 117 10-133 225-349 (786)
133 COG2812 DnaX DNA polymerase II 98.5 4.1E-06 8.8E-11 76.9 14.1 127 28-184 99-228 (515)
134 PRK05707 DNA polymerase III su 98.4 5.5E-06 1.2E-10 72.6 13.6 87 31-130 89-178 (328)
135 PRK06620 hypothetical protein; 98.4 1.3E-05 2.9E-10 66.0 15.0 124 46-199 86-213 (214)
136 PF00308 Bac_DnaA: Bacterial d 98.4 7.7E-06 1.7E-10 67.7 12.4 109 46-177 98-211 (219)
137 TIGR03346 chaperone_ClpB ATP-d 98.3 1.2E-05 2.7E-10 78.9 14.3 158 1-176 610-819 (852)
138 TIGR01650 PD_CobS cobaltochela 98.3 3E-06 6.5E-11 73.6 8.8 120 1-131 79-234 (327)
139 KOG0989|consensus 98.3 5.1E-06 1.1E-10 70.8 9.6 150 2-183 73-236 (346)
140 TIGR02031 BchD-ChlD magnesium 98.3 2E-05 4.3E-10 74.4 14.2 190 1-205 31-261 (589)
141 PRK09087 hypothetical protein; 98.3 6.2E-05 1.3E-09 62.6 15.5 129 47-202 89-222 (226)
142 PF05673 DUF815: Protein of un 98.3 5E-05 1.1E-09 63.3 14.4 149 2-176 68-243 (249)
143 cd00009 AAA The AAA+ (ATPases 98.3 1.2E-05 2.6E-10 60.6 10.1 105 2-116 35-151 (151)
144 TIGR02030 BchI-ChlI magnesium 98.2 1.2E-05 2.7E-10 70.6 11.3 151 46-205 132-312 (337)
145 TIGR03015 pepcterm_ATPase puta 98.2 8.4E-05 1.8E-09 62.9 15.8 137 45-202 123-266 (269)
146 TIGR03345 VI_ClpV1 type VI sec 98.2 2E-05 4.3E-10 77.3 12.9 155 2-176 612-824 (852)
147 TIGR02442 Cob-chelat-sub cobal 98.2 4.1E-05 9E-10 72.9 14.5 147 46-205 127-307 (633)
148 smart00350 MCM minichromosome 98.2 6E-05 1.3E-09 70.0 14.4 148 46-203 301-505 (509)
149 COG0714 MoxR-like ATPases [Gen 98.1 8.7E-06 1.9E-10 71.4 8.1 121 1-130 58-203 (329)
150 TIGR02903 spore_lon_C ATP-depe 98.1 0.00016 3.5E-09 68.6 17.1 99 87-202 323-430 (615)
151 COG1474 CDC6 Cdc6-related prot 98.1 0.00027 5.9E-09 62.9 17.5 149 32-202 110-265 (366)
152 PRK09112 DNA polymerase III su 98.1 3.3E-05 7.1E-10 68.3 11.5 85 32-129 128-212 (351)
153 COG0593 DnaA ATPase involved i 98.1 0.00015 3.3E-09 64.9 15.1 135 47-205 177-316 (408)
154 PRK10865 protein disaggregatio 98.1 8E-05 1.7E-09 73.2 14.0 155 2-176 614-822 (857)
155 CHL00095 clpC Clp protease ATP 98.1 9.4E-05 2E-09 72.5 14.4 157 2-176 555-775 (821)
156 CHL00081 chlI Mg-protoporyphyr 98.0 0.00011 2.5E-09 64.7 13.1 151 46-205 145-325 (350)
157 PRK13407 bchI magnesium chelat 98.0 8.3E-05 1.8E-09 65.3 12.3 145 46-203 129-307 (334)
158 CHL00195 ycf46 Ycf46; Provisio 98.0 0.00053 1.1E-08 63.2 17.2 118 35-177 69-188 (489)
159 PRK07471 DNA polymerase III su 98.0 6.3E-05 1.4E-09 66.9 10.5 73 45-130 141-213 (365)
160 PHA02244 ATPase-like protein 98.0 7E-05 1.5E-09 66.2 10.0 112 1-126 134-269 (383)
161 COG1220 HslU ATP-dependent pro 97.9 3.2E-05 6.9E-10 66.9 7.1 94 32-128 240-347 (444)
162 PRK14700 recombination factor 97.9 3.4E-05 7.4E-10 66.0 7.3 134 84-231 5-143 (300)
163 KOG0741|consensus 97.9 7.4E-05 1.6E-09 68.1 9.7 124 2-128 554-684 (744)
164 PRK08058 DNA polymerase III su 97.9 0.0001 2.2E-09 64.7 10.4 84 32-128 94-180 (329)
165 PRK06964 DNA polymerase III su 97.9 5.5E-05 1.2E-09 66.6 8.7 86 31-129 115-203 (342)
166 PF05621 TniB: Bacterial TniB 97.9 0.00046 9.9E-09 59.3 14.0 146 34-197 135-284 (302)
167 COG0470 HolB ATPase involved i 97.9 0.00011 2.3E-09 63.9 10.2 112 2-127 40-178 (325)
168 KOG1969|consensus 97.9 0.00034 7.5E-09 66.0 13.7 147 1-184 341-517 (877)
169 PRK05564 DNA polymerase III su 97.9 0.00031 6.6E-09 61.2 12.8 113 2-130 42-165 (313)
170 PF07724 AAA_2: AAA domain (Cd 97.9 2.5E-05 5.3E-10 62.2 5.3 94 2-98 19-131 (171)
171 TIGR02974 phageshock_pspF psp 97.9 0.00023 5E-09 62.5 11.8 118 1-133 37-190 (329)
172 TIGR00764 lon_rel lon-related 97.8 0.00017 3.7E-09 68.3 11.3 142 46-205 218-394 (608)
173 smart00382 AAA ATPases associa 97.8 0.00027 5.8E-09 52.5 10.2 107 2-117 18-147 (148)
174 PRK06090 DNA polymerase III su 97.8 0.00028 6.1E-09 61.5 11.6 70 46-128 109-178 (319)
175 PF13177 DNA_pol3_delta2: DNA 97.7 0.00038 8.3E-09 54.8 9.9 90 13-117 69-161 (162)
176 PRK08769 DNA polymerase III su 97.7 0.00036 7.8E-09 60.9 10.5 86 30-128 95-183 (319)
177 PRK06871 DNA polymerase III su 97.7 0.00047 1E-08 60.3 11.3 86 31-129 90-178 (325)
178 COG0542 clpA ATP-binding subun 97.7 0.00045 9.8E-09 66.3 11.4 155 2-176 537-748 (786)
179 PRK07993 DNA polymerase III su 97.7 0.00053 1.1E-08 60.3 11.0 70 46-128 109-178 (334)
180 KOG1514|consensus 97.7 0.00043 9.4E-09 65.0 10.8 148 31-204 494-657 (767)
181 COG2607 Predicted ATPase (AAA+ 97.7 0.0036 7.7E-08 52.1 14.7 149 2-176 101-275 (287)
182 COG1224 TIP49 DNA helicase TIP 97.6 0.0014 3.1E-08 57.3 12.2 132 46-205 292-435 (450)
183 PRK07276 DNA polymerase III su 97.6 0.0015 3.3E-08 56.2 12.3 83 31-127 87-172 (290)
184 PF07728 AAA_5: AAA domain (dy 97.5 9.3E-05 2E-09 56.4 3.7 96 2-108 15-139 (139)
185 PRK09862 putative ATP-dependen 97.5 0.00081 1.8E-08 62.2 10.0 143 46-201 295-491 (506)
186 PRK07399 DNA polymerase III su 97.5 0.0016 3.5E-08 56.8 11.2 85 32-130 108-195 (314)
187 TIGR01818 ntrC nitrogen regula 97.5 0.002 4.3E-08 59.0 12.2 171 2-199 173-381 (463)
188 COG1219 ClpX ATP-dependent pro 97.4 0.00055 1.2E-08 59.0 7.5 81 1-81 112-200 (408)
189 PRK13531 regulatory ATPase Rav 97.4 0.003 6.4E-08 57.9 12.6 143 47-202 109-283 (498)
190 PRK07132 DNA polymerase III su 97.4 0.0026 5.6E-08 55.1 11.8 71 45-128 90-160 (299)
191 KOG2227|consensus 97.4 0.0019 4E-08 58.4 10.8 109 45-176 256-370 (529)
192 PRK11331 5-methylcytosine-spec 97.4 0.0008 1.7E-08 61.0 8.6 73 32-116 258-357 (459)
193 KOG0745|consensus 97.4 0.00054 1.2E-08 61.2 7.3 115 1-118 241-387 (564)
194 PRK15115 response regulator Gl 97.4 0.0028 6.1E-08 57.7 11.9 169 2-196 173-378 (444)
195 TIGR01817 nifA Nif-specific re 97.3 0.0034 7.4E-08 58.7 12.3 171 1-196 234-439 (534)
196 PRK06581 DNA polymerase III su 97.3 0.0017 3.8E-08 54.1 9.0 90 31-133 72-164 (263)
197 COG3267 ExeA Type II secretory 97.3 0.012 2.6E-07 49.3 14.0 144 30-195 116-266 (269)
198 PRK11388 DNA-binding transcrip 97.3 0.0032 7E-08 60.2 11.9 172 1-199 363-568 (638)
199 PRK13406 bchD magnesium chelat 97.3 0.0065 1.4E-07 57.3 13.4 178 2-207 41-255 (584)
200 PRK10365 transcriptional regul 97.3 0.0036 7.8E-08 56.9 11.3 165 2-197 178-384 (441)
201 TIGR00368 Mg chelatase-related 97.2 0.0065 1.4E-07 56.3 12.8 144 46-200 296-497 (499)
202 KOG2035|consensus 97.2 0.033 7.1E-07 47.5 15.5 135 15-183 92-234 (351)
203 COG2204 AtoC Response regulato 97.2 0.0032 6.9E-08 57.4 10.0 165 1-195 179-384 (464)
204 KOG1942|consensus 97.2 0.008 1.7E-07 51.5 11.6 148 27-203 278-439 (456)
205 PRK08699 DNA polymerase III su 97.1 0.0047 1E-07 54.2 10.4 86 30-128 95-183 (325)
206 PRK11361 acetoacetate metaboli 97.1 0.011 2.3E-07 54.0 13.2 172 2-198 182-389 (457)
207 PF01637 Arch_ATPase: Archaeal 97.1 0.0035 7.5E-08 51.2 9.0 118 28-166 101-227 (234)
208 TIGR00602 rad24 checkpoint pro 97.1 0.0077 1.7E-07 57.3 12.3 160 2-182 126-328 (637)
209 KOG2680|consensus 97.1 0.015 3.3E-07 50.0 12.4 130 46-205 289-432 (454)
210 PRK10923 glnG nitrogen regulat 97.0 0.015 3.3E-07 53.3 13.0 172 2-198 177-384 (469)
211 PRK10820 DNA-binding transcrip 97.0 0.011 2.3E-07 55.3 11.9 120 1-133 242-395 (520)
212 PRK08485 DNA polymerase III su 97.0 0.02 4.2E-07 46.5 11.7 87 30-128 39-137 (206)
213 TIGR02915 PEP_resp_reg putativ 97.0 0.011 2.3E-07 53.9 11.4 167 2-195 178-382 (445)
214 PRK11608 pspF phage shock prot 97.0 0.025 5.3E-07 49.7 13.2 119 2-133 45-197 (326)
215 PRK05022 anaerobic nitric oxid 96.9 0.046 1E-06 50.9 15.3 156 1-176 225-414 (509)
216 PF06068 TIP49: TIP49 C-termin 96.8 0.01 2.2E-07 52.5 9.4 72 46-132 279-363 (398)
217 TIGR02329 propionate_PrpR prop 96.8 0.03 6.5E-07 52.3 12.9 120 1-133 250-404 (526)
218 PRK05818 DNA polymerase III su 96.7 0.033 7.2E-07 47.1 11.7 59 46-117 89-147 (261)
219 PTZ00111 DNA replication licen 96.7 0.029 6.3E-07 55.1 12.8 38 166-203 768-805 (915)
220 PRK05917 DNA polymerase III su 96.7 0.017 3.6E-07 49.8 9.8 59 46-117 96-154 (290)
221 TIGR01128 holA DNA polymerase 96.6 0.35 7.6E-06 41.4 17.8 150 12-200 19-176 (302)
222 PF07693 KAP_NTPase: KAP famil 96.5 0.1 2.2E-06 45.3 13.9 123 43-176 170-316 (325)
223 COG1221 PspF Transcriptional r 96.5 0.016 3.4E-07 52.0 8.6 149 10-182 129-309 (403)
224 COG1239 ChlI Mg-chelatase subu 96.5 0.013 2.8E-07 52.5 7.9 79 39-131 140-233 (423)
225 PRK15429 formate hydrogenlyase 96.5 0.13 2.9E-06 49.6 15.5 154 1-176 414-603 (686)
226 PF12774 AAA_6: Hydrolytic ATP 96.4 0.056 1.2E-06 45.1 11.0 109 2-127 48-177 (231)
227 COG1067 LonB Predicted ATP-dep 96.4 0.11 2.4E-06 49.6 14.1 147 46-205 226-402 (647)
228 KOG1051|consensus 96.2 0.027 5.9E-07 55.2 9.1 114 12-132 244-365 (898)
229 PRK15424 propionate catabolism 96.2 0.088 1.9E-06 49.3 12.1 117 1-132 257-418 (538)
230 PRK13765 ATP-dependent proteas 96.2 0.14 3E-06 49.0 13.5 175 10-201 180-399 (637)
231 PF00158 Sigma54_activat: Sigm 96.1 0.055 1.2E-06 42.8 9.1 89 1-109 37-155 (168)
232 KOG2228|consensus 96.1 0.071 1.5E-06 46.6 10.2 93 29-130 117-219 (408)
233 COG3829 RocR Transcriptional r 95.9 0.071 1.5E-06 49.3 9.8 175 1-196 283-491 (560)
234 PRK08116 hypothetical protein; 95.9 0.1 2.3E-06 44.4 10.3 115 2-130 130-260 (268)
235 COG1241 MCM2 Predicted ATPase 95.7 0.063 1.4E-06 51.3 8.9 38 166-203 556-593 (682)
236 PF05707 Zot: Zonular occluden 95.5 0.02 4.4E-07 46.2 4.3 67 46-117 80-146 (193)
237 PF13173 AAA_14: AAA domain 95.5 0.077 1.7E-06 39.7 7.3 103 2-121 18-126 (128)
238 PF05729 NACHT: NACHT domain 95.4 0.13 2.7E-06 39.6 8.4 85 43-132 79-165 (166)
239 COG3604 FhlA Transcriptional r 95.0 0.17 3.6E-06 46.5 9.0 157 1-176 261-450 (550)
240 PF01078 Mg_chelatase: Magnesi 94.9 0.026 5.6E-07 46.1 3.2 63 46-120 107-205 (206)
241 PF07726 AAA_3: ATPase family 94.9 0.068 1.5E-06 40.3 5.2 92 1-108 14-129 (131)
242 PF12846 AAA_10: AAA-like doma 94.8 0.13 2.8E-06 43.7 7.4 70 45-123 220-294 (304)
243 PF14532 Sigma54_activ_2: Sigm 94.7 0.047 1E-06 41.5 4.1 60 46-116 70-137 (138)
244 KOG0990|consensus 94.6 0.45 9.8E-06 41.4 10.2 90 30-132 110-205 (360)
245 PF00493 MCM: MCM2/3/5 family 94.5 0.057 1.2E-06 47.5 4.7 146 46-203 122-327 (331)
246 KOG1968|consensus 94.0 0.29 6.3E-06 48.3 8.7 147 2-177 373-531 (871)
247 PF13304 AAA_21: AAA domain; P 93.8 0.28 6.1E-06 39.8 7.3 65 27-101 238-303 (303)
248 PRK07452 DNA polymerase III su 93.7 4.3 9.3E-05 35.3 14.8 139 33-199 46-196 (326)
249 PF12775 AAA_7: P-loop contain 93.1 0.29 6.2E-06 41.9 6.3 84 45-132 100-195 (272)
250 KOG0478|consensus 93.1 0.79 1.7E-05 43.8 9.5 66 46-120 527-616 (804)
251 PRK05574 holA DNA polymerase I 93.0 5.6 0.00012 34.6 16.8 141 33-201 61-212 (340)
252 PF14516 AAA_35: AAA-like doma 93.0 1.5 3.2E-05 38.5 10.9 119 32-176 112-241 (331)
253 PRK08181 transposase; Validate 93.0 0.23 4.9E-06 42.4 5.5 83 2-97 122-209 (269)
254 smart00763 AAA_PrkA PrkA AAA d 92.5 0.36 7.7E-06 42.9 6.2 73 47-132 238-329 (361)
255 PHA00012 I assembly protein 92.4 0.2 4.3E-06 43.9 4.4 55 46-105 82-136 (361)
256 COG2909 MalT ATP-dependent tra 91.9 0.74 1.6E-05 44.9 8.0 119 28-175 112-236 (894)
257 PF00931 NB-ARC: NB-ARC domain 91.6 1.3 2.8E-05 37.5 8.6 102 46-175 102-203 (287)
258 KOG0991|consensus 91.5 3.1 6.6E-05 35.0 10.0 101 14-129 81-184 (333)
259 PF13401 AAA_22: AAA domain; P 91.1 0.74 1.6E-05 33.9 5.9 52 31-94 74-125 (131)
260 PRK06526 transposase; Provisio 91.1 0.37 7.9E-06 40.8 4.6 84 2-98 114-202 (254)
261 PF10236 DAP3: Mitochondrial r 91.0 8.6 0.00019 33.5 13.2 102 31-132 140-279 (309)
262 PRK07952 DNA replication prote 90.9 0.53 1.1E-05 39.6 5.3 84 2-97 115-205 (244)
263 PRK09183 transposase/IS protei 90.6 0.67 1.4E-05 39.3 5.8 84 2-97 118-206 (259)
264 PRK06921 hypothetical protein; 90.5 1.1 2.4E-05 38.2 7.0 52 2-56 133-188 (266)
265 PRK13898 type IV secretion sys 89.9 5 0.00011 39.7 11.9 99 13-120 608-713 (800)
266 PF05872 DUF853: Bacterial pro 89.3 1 2.2E-05 41.1 6.1 85 32-125 238-330 (502)
267 KOG1051|consensus 89.0 2.3 5E-05 42.2 8.6 80 2-96 607-710 (898)
268 KOG0481|consensus 88.6 7.3 0.00016 36.4 11.0 38 166-203 603-640 (729)
269 PRK04841 transcriptional regul 88.5 4.5 9.7E-05 40.1 10.7 108 33-169 109-221 (903)
270 PRK12377 putative replication 88.2 1.5 3.3E-05 36.9 6.2 84 2-97 117-206 (248)
271 COG4565 CitB Response regulato 87.3 11 0.00024 31.0 10.2 153 33-216 35-200 (224)
272 COG0606 Predicted ATPase with 86.9 4.1 8.9E-05 37.5 8.3 64 46-121 284-383 (490)
273 cd01120 RecA-like_NTPases RecA 86.6 2.6 5.7E-05 31.8 6.3 59 37-98 78-138 (165)
274 PRK13853 type IV secretion sys 86.0 5.1 0.00011 39.6 9.3 98 13-119 593-697 (789)
275 PRK06585 holA DNA polymerase I 86.0 23 0.0005 31.0 15.7 134 33-198 66-206 (343)
276 PRK08939 primosomal protein Dn 85.1 2.4 5.1E-05 36.9 5.8 84 2-97 172-261 (306)
277 PF03215 Rad17: Rad17 cell cyc 84.5 24 0.00053 33.1 12.5 119 46-183 133-269 (519)
278 PRK06835 DNA replication prote 83.8 3.5 7.6E-05 36.3 6.4 54 2-58 199-259 (329)
279 COG3284 AcoR Transcriptional a 82.1 3.3 7.1E-05 39.2 5.7 120 2-132 352-501 (606)
280 KOG0479|consensus 81.6 2.7 5.8E-05 39.7 4.9 43 163-205 603-645 (818)
281 PLN03210 Resistant to P. syrin 81.5 9.5 0.00021 39.4 9.4 70 45-131 296-365 (1153)
282 KOG0482|consensus 80.6 1.1 2.3E-05 41.6 2.0 84 46-130 440-539 (721)
283 TIGR00929 VirB4_CagE type IV s 80.0 15 0.00032 36.1 9.9 65 45-118 629-698 (785)
284 PF09820 AAA-ATPase_like: Pred 79.5 15 0.00032 31.6 8.6 108 44-169 142-264 (284)
285 COG2874 FlaH Predicted ATPases 79.2 5.9 0.00013 32.7 5.6 77 28-115 107-189 (235)
286 PF10923 DUF2791: P-loop Domai 78.4 54 0.0012 29.9 13.0 95 31-130 227-346 (416)
287 PF06144 DNA_pol3_delta: DNA p 78.4 14 0.0003 28.6 7.6 92 36-135 45-142 (172)
288 COG4619 ABC-type uncharacteriz 77.9 10 0.00022 30.4 6.4 74 28-116 136-209 (223)
289 PHA00350 putative assembly pro 77.7 3.5 7.6E-05 37.2 4.4 65 46-112 82-160 (399)
290 COG1373 Predicted ATPase (AAA+ 77.5 34 0.00073 30.9 10.7 113 4-132 55-182 (398)
291 PF03969 AFG1_ATPase: AFG1-lik 77.0 6.5 0.00014 35.1 5.9 40 47-97 129-168 (362)
292 PRK13539 cytochrome c biogenes 76.8 8.3 0.00018 31.1 6.1 66 38-120 139-204 (207)
293 PRK07914 hypothetical protein; 76.4 51 0.0011 28.6 12.6 122 45-199 64-191 (320)
294 PRK05629 hypothetical protein; 76.0 52 0.0011 28.5 12.8 121 45-198 64-188 (318)
295 PRK13873 conjugal transfer ATP 75.7 20 0.00043 35.6 9.4 97 13-118 601-704 (811)
296 PRK08487 DNA polymerase III su 75.5 55 0.0012 28.5 14.3 91 33-136 56-154 (328)
297 COG1136 SalX ABC-type antimicr 75.4 34 0.00074 28.4 9.3 65 36-115 152-216 (226)
298 TIGR03783 Bac_Flav_CT_G Bacter 75.2 35 0.00076 34.0 10.8 66 45-119 665-736 (829)
299 TIGR02746 TraC-F-type type-IV 74.0 35 0.00076 33.6 10.6 74 45-126 637-715 (797)
300 PF05272 VirE: Virulence-assoc 71.3 5.7 0.00012 32.2 3.8 61 46-116 96-169 (198)
301 PRK09694 helicase Cas3; Provis 71.2 7.8 0.00017 38.7 5.3 53 46-108 440-492 (878)
302 COG3283 TyrR Transcriptional r 71.1 48 0.001 29.9 9.5 149 10-181 254-431 (511)
303 PRK10263 DNA translocase FtsK; 70.8 12 0.00026 38.8 6.5 73 47-128 1142-1218(1355)
304 cd03227 ABC_Class2 ABC-type Cl 68.0 20 0.00044 27.7 6.1 56 45-115 99-154 (162)
305 KOG2255|consensus 68.0 48 0.001 27.0 8.1 126 12-167 92-221 (224)
306 smart00487 DEXDc DEAD-like hel 67.8 10 0.00022 29.2 4.5 63 46-118 130-192 (201)
307 COG5271 MDN1 AAA ATPase contai 67.8 45 0.00098 36.6 9.6 119 2-132 1559-1705(4600)
308 PHA00520 packaging NTPase P4 67.8 36 0.00077 29.5 7.8 80 15-96 155-236 (330)
309 KOG0477|consensus 67.7 24 0.00053 33.9 7.3 38 166-203 721-758 (854)
310 PF01695 IstB_IS21: IstB-like 67.6 1.6 3.5E-05 34.7 -0.2 52 2-56 63-119 (178)
311 KOG3928|consensus 67.4 77 0.0017 28.9 10.1 116 46-175 316-457 (461)
312 cd03281 ABC_MSH5_euk MutS5 hom 66.9 37 0.0008 27.7 7.8 68 30-104 93-161 (213)
313 COG1116 TauB ABC-type nitrate/ 65.8 47 0.001 28.0 8.1 56 36-105 140-196 (248)
314 smart00534 MUTSac ATPase domai 65.8 63 0.0014 25.5 8.8 61 30-98 63-123 (185)
315 COG1121 ZnuC ABC-type Mn/Zn tr 65.7 34 0.00073 29.0 7.3 65 35-114 148-212 (254)
316 KOG2383|consensus 65.6 11 0.00023 34.2 4.5 41 46-97 194-234 (467)
317 PF07034 ORC3_N: Origin recogn 65.5 62 0.0013 28.4 9.3 73 45-130 199-279 (330)
318 TIGR02237 recomb_radB DNA repa 65.3 32 0.00069 27.5 7.1 26 33-59 86-111 (209)
319 PF13481 AAA_25: AAA domain; P 65.3 17 0.00037 28.6 5.4 31 30-60 126-156 (193)
320 KOG0480|consensus 64.7 56 0.0012 31.6 9.1 75 46-132 443-544 (764)
321 PRK13830 conjugal transfer pro 64.6 47 0.001 33.1 9.2 79 32-119 637-722 (818)
322 COG1484 DnaC DNA replication p 64.4 16 0.00034 30.9 5.2 84 2-98 121-210 (254)
323 COG1485 Predicted ATPase [Gene 64.1 12 0.00026 33.2 4.5 39 47-96 132-170 (367)
324 cd01127 TrwB Bacterial conjuga 64.1 30 0.00065 31.3 7.3 74 45-132 270-351 (410)
325 KOG2170|consensus 64.0 1E+02 0.0022 27.1 10.2 35 36-80 170-204 (344)
326 PRK13695 putative NTPase; Prov 64.0 33 0.00073 26.6 6.8 74 45-132 96-171 (174)
327 PF02463 SMC_N: RecF/RecN/SMC 64.0 29 0.00063 28.0 6.6 57 43-115 156-212 (220)
328 cd03287 ABC_MSH3_euk MutS3 hom 63.4 64 0.0014 26.6 8.5 59 31-100 99-157 (222)
329 cd01124 KaiC KaiC is a circadi 63.3 27 0.00058 27.2 6.1 58 33-98 84-141 (187)
330 COG1220 HslU ATP-dependent pro 63.2 13 0.00027 33.1 4.4 39 2-40 66-107 (444)
331 COG1674 FtsK DNA segregation A 62.7 10 0.00022 37.9 4.3 73 46-127 640-715 (858)
332 PRK05800 cobU adenosylcobinami 62.6 57 0.0012 25.6 7.8 86 2-91 17-122 (170)
333 KOG2543|consensus 62.5 84 0.0018 28.5 9.4 77 45-131 115-194 (438)
334 COG3451 VirB4 Type IV secretor 61.8 38 0.00081 33.7 7.9 69 45-122 634-707 (796)
335 cd01121 Sms Sms (bacterial rad 61.6 27 0.00059 31.2 6.5 85 31-116 145-233 (372)
336 TIGR02759 TraD_Ftype type IV c 61.3 32 0.0007 32.7 7.2 74 45-132 407-488 (566)
337 cd01125 repA Hexameric Replica 61.3 86 0.0019 25.8 9.1 91 30-124 97-198 (239)
338 cd03276 ABC_SMC6_euk Eukaryoti 61.1 34 0.00074 27.5 6.4 49 45-101 131-180 (198)
339 TIGR02562 cas3_yersinia CRISPR 61.1 11 0.00024 38.2 4.1 40 46-94 594-633 (1110)
340 PRK13541 cytochrome c biogenes 60.6 67 0.0015 25.4 8.1 56 37-103 134-189 (195)
341 PF12780 AAA_8: P-loop contain 60.1 35 0.00075 29.1 6.6 53 2-56 47-100 (268)
342 COG1106 Predicted ATPases [Gen 59.9 25 0.00054 31.5 5.8 71 27-107 253-323 (371)
343 cd03216 ABC_Carb_Monos_I This 59.5 32 0.00069 26.6 5.8 54 37-101 93-146 (163)
344 PRK13538 cytochrome c biogenes 59.4 47 0.001 26.6 7.0 54 37-101 140-193 (204)
345 PF00488 MutS_V: MutS domain V 58.6 1E+02 0.0022 25.6 9.1 61 30-101 110-170 (235)
346 PF13191 AAA_16: AAA ATPase do 58.6 6.9 0.00015 30.4 1.9 14 45-58 150-163 (185)
347 PRK13891 conjugal transfer pro 58.3 50 0.0011 33.1 8.2 65 45-118 687-756 (852)
348 PF13654 AAA_32: AAA domain; P 58.3 33 0.00071 32.2 6.5 108 87-203 388-507 (509)
349 PF03796 DnaB_C: DnaB-like hel 58.3 1.1E+02 0.0023 25.5 9.3 50 8-63 98-148 (259)
350 PF00270 DEAD: DEAD/DEAH box h 58.1 14 0.00031 28.1 3.6 42 46-95 120-161 (169)
351 TIGR02688 conserved hypothetic 57.3 1.6E+02 0.0035 27.2 11.4 53 155-207 385-438 (449)
352 cd00984 DnaB_C DnaB helicase C 56.5 1.1E+02 0.0024 25.0 9.3 18 41-59 120-137 (242)
353 cd03283 ABC_MutS-like MutS-lik 55.9 34 0.00073 27.6 5.6 61 31-101 92-152 (199)
354 COG3899 Predicted ATPase [Gene 55.6 1.1E+02 0.0024 30.7 10.0 104 46-176 155-262 (849)
355 cd03233 ABC_PDR_domain1 The pl 54.1 41 0.0009 26.9 5.9 55 37-100 129-183 (202)
356 COG4175 ProV ABC-type proline/ 54.1 37 0.0008 30.0 5.7 66 39-118 177-250 (386)
357 PRK13721 conjugal transfer ATP 54.0 1.4E+02 0.0031 29.8 10.6 65 46-117 660-732 (844)
358 PRK09361 radB DNA repair and r 53.0 38 0.00083 27.5 5.6 15 46-60 108-122 (225)
359 TIGR03744 traC_PFL_4706 conjug 52.9 21 0.00046 35.9 4.6 65 45-118 733-800 (893)
360 COG1131 CcmA ABC-type multidru 52.9 44 0.00096 28.7 6.1 56 37-102 147-202 (293)
361 PRK13543 cytochrome c biogenes 52.2 51 0.0011 26.6 6.2 53 38-101 149-201 (214)
362 cd03230 ABC_DR_subfamily_A Thi 52.1 47 0.001 25.8 5.8 53 37-100 106-158 (173)
363 TIGR02653 Lon_rel_chp conserve 51.5 67 0.0014 31.1 7.4 54 152-205 389-443 (675)
364 TIGR03689 pup_AAA proteasome A 51.1 32 0.00069 32.3 5.2 13 190-202 438-450 (512)
365 cd03225 ABC_cobalt_CbiO_domain 50.9 78 0.0017 25.3 7.0 63 37-114 145-207 (211)
366 cd03280 ABC_MutS2 MutS2 homolo 50.4 1E+02 0.0022 24.6 7.6 57 32-97 95-151 (200)
367 TIGR03608 L_ocin_972_ABC putat 50.4 92 0.002 24.7 7.4 51 37-98 145-195 (206)
368 cd00338 Ser_Recombinase Serine 50.4 97 0.0021 22.6 7.4 55 4-59 24-79 (137)
369 TIGR00960 3a0501s02 Type II (G 50.3 86 0.0019 25.1 7.3 63 37-114 149-211 (216)
370 PRK13631 cbiO cobalt transport 50.2 77 0.0017 27.6 7.3 55 35-100 185-239 (320)
371 KOG0480|consensus 49.8 98 0.0021 30.0 8.1 89 97-205 557-646 (764)
372 cd03226 ABC_cobalt_CbiO_domain 49.7 94 0.002 24.7 7.3 63 37-114 137-199 (205)
373 COG1066 Sms Predicted ATP-depe 49.3 57 0.0012 29.8 6.2 101 29-131 153-257 (456)
374 PF12696 TraG-D_C: TraM recogn 49.0 1E+02 0.0023 22.5 7.1 73 46-132 1-81 (128)
375 cd03243 ABC_MutS_homologs The 48.8 1.3E+02 0.0029 23.9 8.1 48 45-101 108-155 (202)
376 PRK13643 cbiO cobalt transport 48.8 86 0.0019 26.7 7.3 54 37-101 155-208 (288)
377 PF06068 TIP49: TIP49 C-termin 48.5 21 0.00046 32.1 3.4 39 2-41 66-107 (398)
378 KOG0732|consensus 48.3 9.8 0.00021 38.5 1.5 51 10-61 617-669 (1080)
379 PRK11823 DNA repair protein Ra 48.1 63 0.0014 29.7 6.6 60 32-92 144-205 (446)
380 TIGR02324 CP_lyasePhnL phospho 48.0 1.2E+02 0.0026 24.4 7.8 64 37-115 160-223 (224)
381 PRK05907 hypothetical protein; 47.9 1.9E+02 0.0041 25.2 13.0 139 32-200 53-201 (311)
382 PRK04296 thymidine kinase; Pro 47.5 81 0.0018 25.0 6.5 58 46-115 79-140 (190)
383 cd03239 ABC_SMC_head The struc 47.3 56 0.0012 25.7 5.5 56 45-115 116-171 (178)
384 PRK13540 cytochrome c biogenes 47.1 67 0.0014 25.6 6.0 55 37-102 138-192 (200)
385 cd01126 TraG_VirD4 The TraG/Tr 46.9 1.4E+02 0.003 26.6 8.6 74 45-132 263-344 (384)
386 PRK14269 phosphate ABC transpo 46.7 1E+02 0.0022 25.4 7.3 54 36-101 152-205 (246)
387 PRK11124 artP arginine transpo 46.6 95 0.0021 25.4 7.1 53 37-100 152-204 (242)
388 cd03231 ABC_CcmA_heme_exporter 46.5 76 0.0016 25.3 6.3 55 37-102 136-190 (201)
389 PRK14250 phosphate ABC transpo 46.2 1.2E+02 0.0027 24.8 7.7 55 37-101 142-196 (241)
390 PRK13639 cbiO cobalt transport 46.1 96 0.0021 26.2 7.1 54 37-101 148-201 (275)
391 cd03262 ABC_HisP_GlnQ_permease 45.9 58 0.0013 26.0 5.6 51 39-100 148-198 (213)
392 cd03240 ABC_Rad50 The catalyti 45.8 1.3E+02 0.0027 24.2 7.5 57 45-115 139-196 (204)
393 PRK12723 flagellar biosynthesi 45.8 2.1E+02 0.0045 25.9 9.4 130 31-175 243-379 (388)
394 PRK13649 cbiO cobalt transport 45.7 99 0.0022 26.1 7.2 53 37-100 156-208 (280)
395 PF04465 DUF499: Protein of un 45.5 1E+02 0.0023 31.6 8.1 47 30-81 89-137 (1035)
396 cd03292 ABC_FtsE_transporter F 45.4 62 0.0013 25.9 5.6 61 39-114 149-209 (214)
397 PF02969 TAF: TATA box binding 45.4 50 0.0011 21.7 4.1 31 170-200 36-66 (66)
398 cd03295 ABC_OpuCA_Osmoprotecti 45.3 97 0.0021 25.4 6.9 54 37-100 146-199 (242)
399 cd03215 ABC_Carb_Monos_II This 45.2 59 0.0013 25.4 5.4 51 39-100 117-167 (182)
400 TIGR02770 nickel_nikD nickel i 45.2 1.1E+02 0.0024 24.8 7.2 54 37-100 136-189 (230)
401 cd03213 ABCG_EPDR ABCG transpo 44.8 1.5E+02 0.0033 23.4 7.8 49 39-98 124-172 (194)
402 cd03232 ABC_PDR_domain2 The pl 44.7 1.5E+02 0.0033 23.3 7.9 62 39-114 121-182 (192)
403 COG0396 sufC Cysteine desulfur 44.6 1E+02 0.0023 25.9 6.7 58 28-97 147-204 (251)
404 PRK09376 rho transcription ter 44.5 2.3E+02 0.0049 25.9 9.3 26 35-60 243-271 (416)
405 PRK11701 phnK phosphonate C-P 44.2 97 0.0021 25.7 6.8 55 37-101 162-216 (258)
406 cd03266 ABC_NatA_sodium_export 44.1 69 0.0015 25.7 5.8 52 38-100 148-199 (218)
407 TIGR01166 cbiO cobalt transpor 44.1 78 0.0017 24.9 6.0 51 37-98 138-188 (190)
408 PRK08533 flagellar accessory p 44.1 1.4E+02 0.0031 24.5 7.7 80 30-117 103-186 (230)
409 cd03263 ABC_subfamily_A The AB 43.9 70 0.0015 25.8 5.8 52 38-101 145-196 (220)
410 cd03247 ABCC_cytochrome_bd The 43.9 79 0.0017 24.6 5.9 61 37-114 109-169 (178)
411 TIGR02673 FtsE cell division A 43.7 71 0.0015 25.6 5.8 61 39-114 150-210 (214)
412 cd03235 ABC_Metallic_Cations A 43.5 69 0.0015 25.7 5.6 61 39-114 145-205 (213)
413 PRK10938 putative molybdenum t 43.3 1.1E+02 0.0024 28.2 7.6 56 37-102 412-467 (490)
414 PF13175 AAA_15: AAA ATPase do 43.3 85 0.0018 27.7 6.7 42 48-98 372-413 (415)
415 TIGR01189 ccmA heme ABC export 43.1 97 0.0021 24.5 6.4 52 39-101 140-191 (198)
416 PF14350 Beta_protein: Beta pr 43.0 2.2E+02 0.0048 24.9 9.1 83 14-104 125-208 (347)
417 KOG1970|consensus 43.0 3.1E+02 0.0067 26.3 14.7 158 2-181 126-319 (634)
418 cd03282 ABC_MSH4_euk MutS4 hom 42.9 1.3E+02 0.0029 24.2 7.2 48 45-101 108-155 (204)
419 TIGR02211 LolD_lipo_ex lipopro 42.9 1.4E+02 0.003 24.0 7.4 63 37-114 152-214 (221)
420 PRK13651 cobalt transporter AT 42.8 91 0.002 26.9 6.5 54 37-101 176-229 (305)
421 cd03300 ABC_PotA_N PotA is an 42.8 1.5E+02 0.0033 24.1 7.7 54 37-100 141-194 (232)
422 cd00267 ABC_ATPase ABC (ATP-bi 42.7 78 0.0017 23.9 5.6 63 37-114 91-153 (157)
423 PRK06067 flagellar accessory p 42.6 1.4E+02 0.003 24.4 7.4 27 31-58 107-133 (234)
424 PRK11629 lolD lipoprotein tran 42.6 1.4E+02 0.0029 24.4 7.4 55 37-101 156-210 (233)
425 TIGR02982 heterocyst_DevA ABC 42.5 1.4E+02 0.0029 24.1 7.3 63 37-114 152-214 (220)
426 TIGR02858 spore_III_AA stage I 42.5 80 0.0017 26.9 6.0 63 34-115 184-256 (270)
427 cd03255 ABC_MJ0796_Lo1CDE_FtsE 42.5 1.2E+02 0.0027 24.2 7.0 63 37-114 151-213 (218)
428 COG4098 comFA Superfamily II D 42.5 28 0.0006 31.0 3.2 49 47-105 204-252 (441)
429 PRK09984 phosphonate/organopho 42.4 1.2E+02 0.0027 25.1 7.2 55 37-101 163-217 (262)
430 cd03260 ABC_PstB_phosphate_tra 42.4 96 0.0021 25.1 6.4 51 38-100 153-203 (227)
431 TIGR01587 cas3_core CRISPR-ass 42.3 46 0.001 29.1 4.8 14 46-59 125-138 (358)
432 PRK11264 putative amino-acid A 42.2 75 0.0016 26.2 5.8 51 39-100 157-207 (250)
433 PRK13641 cbiO cobalt transport 41.8 1.2E+02 0.0026 25.7 7.1 53 37-100 156-208 (287)
434 cd03268 ABC_BcrA_bacitracin_re 41.7 81 0.0018 25.1 5.8 52 39-101 139-190 (208)
435 cd03269 ABC_putative_ATPase Th 41.5 79 0.0017 25.2 5.7 53 37-100 139-191 (210)
436 PF10412 TrwB_AAD_bind: Type I 41.5 57 0.0012 29.2 5.2 72 45-129 243-322 (386)
437 PF13337 Lon_2: Putative ATP-d 41.3 93 0.002 28.7 6.5 58 156-213 384-442 (457)
438 PRK14259 phosphate ABC transpo 41.1 98 0.0021 26.0 6.4 61 39-115 167-227 (269)
439 PRK13637 cbiO cobalt transport 40.8 1.6E+02 0.0036 25.0 7.8 54 37-100 155-208 (287)
440 COG4181 Predicted ABC-type tra 40.8 1.5E+02 0.0033 24.0 6.8 64 37-115 157-220 (228)
441 cd03256 ABC_PhnC_transporter A 40.7 1.6E+02 0.0034 24.0 7.5 55 37-101 155-209 (241)
442 PF02702 KdpD: Osmosensitive K 40.6 77 0.0017 26.0 5.3 72 46-126 84-173 (211)
443 PRK11231 fecE iron-dicitrate t 40.6 74 0.0016 26.4 5.5 53 38-101 150-202 (255)
444 COG1224 TIP49 DNA helicase TIP 40.3 42 0.0009 30.2 3.9 39 2-41 81-122 (450)
445 TIGR03771 anch_rpt_ABC anchore 40.3 1.7E+02 0.0036 23.7 7.5 53 37-100 124-176 (223)
446 PF04665 Pox_A32: Poxvirus A32 39.9 2E+02 0.0044 24.1 7.9 72 46-130 99-170 (241)
447 cd03253 ABCC_ATM1_transporter 39.7 93 0.002 25.3 6.0 52 37-100 148-199 (236)
448 cd03228 ABCC_MRP_Like The MRP 39.6 1E+02 0.0022 23.8 5.9 60 38-114 108-167 (171)
449 cd01393 recA_like RecA is a b 39.5 1.1E+02 0.0024 24.6 6.3 16 45-60 114-129 (226)
450 cd03219 ABC_Mj1267_LivG_branch 39.5 80 0.0017 25.7 5.5 54 37-101 154-207 (236)
451 TIGR03411 urea_trans_UrtD urea 39.5 81 0.0018 25.8 5.6 53 37-101 154-206 (242)
452 cd01122 GP4d_helicase GP4d_hel 39.4 1.1E+02 0.0024 25.5 6.5 21 39-60 135-155 (271)
453 TIGR03740 galliderm_ABC gallid 39.4 91 0.002 25.2 5.8 54 37-101 135-188 (223)
454 PRK10419 nikE nickel transport 39.2 1.8E+02 0.0039 24.4 7.7 55 37-101 162-216 (268)
455 cd03286 ABC_MSH6_euk MutS6 hom 39.1 2.2E+02 0.0047 23.4 8.3 61 31-102 98-158 (218)
456 cd03290 ABCC_SUR1_N The SUR do 39.0 99 0.0022 24.9 5.9 52 38-100 152-205 (218)
457 cd03218 ABC_YhbG The ABC trans 39.0 85 0.0018 25.5 5.6 53 37-100 144-196 (232)
458 PRK13646 cbiO cobalt transport 39.0 1.7E+02 0.0037 24.8 7.6 55 37-101 156-210 (286)
459 COG1119 ModF ABC-type molybden 38.8 1E+02 0.0023 26.1 5.9 63 35-106 180-242 (257)
460 PRK10619 histidine/lysine/argi 38.5 85 0.0018 26.1 5.6 54 37-101 163-216 (257)
461 TIGR01277 thiQ thiamine ABC tr 38.1 1.9E+02 0.0041 23.1 7.4 52 39-100 141-192 (213)
462 PRK11300 livG leucine/isoleuci 38.1 90 0.0019 25.8 5.7 53 39-101 166-218 (255)
463 cd03246 ABCC_Protease_Secretio 38.0 1E+02 0.0022 23.8 5.7 53 37-100 107-159 (173)
464 PRK08118 topology modulation p 38.0 1.9E+02 0.0041 22.4 7.5 42 90-132 62-103 (167)
465 PRK06934 flavodoxin; Provision 37.7 47 0.001 27.5 3.7 88 2-95 76-168 (221)
466 cd03249 ABC_MTABC3_MDL1_MDL2 M 37.5 1E+02 0.0022 25.2 5.8 52 37-100 150-201 (238)
467 PRK13638 cbiO cobalt transport 37.4 90 0.0019 26.2 5.6 53 37-100 147-199 (271)
468 PF14097 SpoVAE: Stage V sporu 37.4 79 0.0017 25.1 4.7 50 3-57 16-65 (180)
469 TIGR02315 ABC_phnC phosphonate 37.4 1.9E+02 0.0041 23.6 7.5 54 37-100 156-209 (243)
470 cd03252 ABCC_Hemolysin The ABC 37.3 1E+02 0.0022 25.1 5.8 52 37-100 149-200 (237)
471 cd03259 ABC_Carb_Solutes_like 37.3 1.8E+02 0.0038 23.2 7.2 54 37-100 141-194 (213)
472 PRK09493 glnQ glutamine ABC tr 37.3 96 0.0021 25.4 5.7 52 38-100 148-199 (240)
473 TIGR03269 met_CoM_red_A2 methy 37.3 1.7E+02 0.0036 27.3 7.8 56 36-101 178-233 (520)
474 TIGR00972 3a0107s01c2 phosphat 37.2 1.6E+02 0.0034 24.3 7.0 52 37-100 155-206 (247)
475 PRK13634 cbiO cobalt transport 37.2 2E+02 0.0044 24.4 7.8 54 37-100 156-209 (290)
476 PRK10418 nikD nickel transport 37.0 2.1E+02 0.0045 23.7 7.7 54 37-100 151-204 (254)
477 cd03293 ABC_NrtD_SsuB_transpor 37.0 1.7E+02 0.0037 23.5 7.1 54 37-100 142-195 (220)
478 cd03273 ABC_SMC2_euk Eukaryoti 36.9 1.9E+02 0.0042 23.9 7.5 55 45-115 188-242 (251)
479 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 36.6 1E+02 0.0022 25.0 5.7 54 37-101 153-206 (224)
480 PRK14253 phosphate ABC transpo 36.6 1E+02 0.0022 25.4 5.7 52 37-100 156-207 (249)
481 PRK10938 putative molybdenum t 36.3 1.4E+02 0.003 27.5 7.1 54 37-101 146-199 (490)
482 PF01580 FtsK_SpoIIIE: FtsK/Sp 36.3 26 0.00055 28.1 2.0 48 46-98 155-204 (205)
483 PRK13645 cbiO cobalt transport 36.3 1.9E+02 0.004 24.6 7.5 54 37-100 161-214 (289)
484 KOG0922|consensus 36.2 1.5E+02 0.0032 28.8 7.1 88 2-101 111-211 (674)
485 KOG0058|consensus 36.2 93 0.002 30.4 5.9 14 45-58 622-635 (716)
486 PF01300 Sua5_yciO_yrdC: Telom 35.9 2.1E+02 0.0045 22.5 7.2 94 28-130 24-118 (179)
487 TIGR01618 phage_P_loop phage n 35.9 1.9E+02 0.0041 23.9 7.1 49 46-94 82-142 (220)
488 TIGR03873 F420-0_ABC_ATP propo 35.9 1.1E+02 0.0023 25.5 5.8 53 37-100 148-200 (256)
489 PRK14235 phosphate transporter 35.9 1.6E+02 0.0036 24.6 7.0 53 37-101 174-226 (267)
490 PRK10895 lipopolysaccharide AB 35.8 1E+02 0.0022 25.3 5.6 54 37-101 148-201 (241)
491 PRK15112 antimicrobial peptide 35.8 1.7E+02 0.0036 24.5 7.0 54 37-100 160-213 (267)
492 cd03272 ABC_SMC3_euk Eukaryoti 35.8 2.1E+02 0.0046 23.2 7.6 55 45-115 180-234 (243)
493 PRK15056 manganese/iron transp 35.7 1E+02 0.0022 25.9 5.7 46 46-101 161-206 (272)
494 cd03224 ABC_TM1139_LivF_branch 35.7 98 0.0021 24.9 5.4 45 45-99 150-194 (222)
495 COG4555 NatA ABC-type Na+ tran 35.4 1.5E+02 0.0032 24.7 6.1 54 43-108 150-203 (245)
496 PRK11614 livF leucine/isoleuci 35.3 1E+02 0.0022 25.1 5.5 45 46-100 156-200 (237)
497 PRK13546 teichoic acids export 35.2 1.1E+02 0.0025 25.7 5.9 54 37-101 154-207 (264)
498 PRK10908 cell division protein 35.2 1.1E+02 0.0023 24.7 5.6 52 39-101 150-201 (222)
499 COG2401 ABC-type ATPase fused 35.1 66 0.0014 29.6 4.5 53 39-101 520-572 (593)
500 PRK10247 putative ABC transpor 35.1 2.4E+02 0.0051 22.8 7.6 63 37-114 148-210 (225)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-43 Score=298.65 Aligned_cols=191 Identities=23% Similarity=0.386 Sum_probs=173.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc--chHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI--SESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~--~~~~~~~l~~l 77 (242)
|||||+|+++++.|+.|.+|.|..|| |++.+.++++|..|+..+ ||||||||||+++.+|.+.+. ..+.++.+-+|
T Consensus 200 LLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAreka-PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleL 278 (406)
T COG1222 200 LLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKA-PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLEL 278 (406)
T ss_pred HHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcC-CeEEEEechhhhhcccccCCCCchHHHHHHHHHH
Confidence 69999999999999999999999987 999999999999999998 999999999999999977653 34578999999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|| ...++|-||+|||+++-|||||+ ||||++|+||+||.+.|.+||+.|.+++.+. +++||
T Consensus 279 L~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-----------~dvd~- 346 (406)
T COG1222 279 LNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-----------DDVDL- 346 (406)
T ss_pred HHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-----------cCcCH-
Confidence 99998 55678999999999999999999 9999999999999999999999999875443 34777
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHK 207 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 207 (242)
+.||+.|+|+|||||+++|.+|-..+...++..+|++||++|.+++.....
T Consensus 347 ---e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 347 ---ELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKKK 397 (406)
T ss_pred ---HHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhccc
Confidence 999999999999999999997766677777889999999999999986543
No 2
>KOG0734|consensus
Probab=100.00 E-value=1.5e-42 Score=306.34 Aligned_cols=209 Identities=26% Similarity=0.369 Sum_probs=188.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
|||||+|+|.|+|||+.+++++-.++ |.+.++++.+|..|++.+ ||||||||||+++++|...+.+ ..++.+|+||.
T Consensus 352 lLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~A-PcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLv 429 (752)
T KOG0734|consen 352 LLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARA-PCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLV 429 (752)
T ss_pred HHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcC-CeEEEEechhhhcccCCccHHH-HHHHHHHHHHH
Confidence 69999999999999999999999876 999999999999999998 9999999999999999887755 78999999999
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
+|| ..+.+|+|||+||.|+.||+||. ||||++|.+|.||...|.+||+.|+.++.+. +++|.
T Consensus 430 EmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~-----------~~VD~--- 495 (752)
T KOG0734|consen 430 EMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD-----------EDVDP--- 495 (752)
T ss_pred HhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcc-----------cCCCH---
Confidence 998 56778999999999999999999 8999999999999999999999999975443 35676
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCC--CccHHHHHHHHHHHHHhhhhhhhcccccCCCcccccCCCC
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYASEDG--VLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGVDKS 228 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (242)
.-||+-|.||+||||.|+|+ +|+..+..++ .+++.+++.|-.+++.+..++....+.+.....+||+.|+
T Consensus 496 -~iiARGT~GFsGAdLaNlVN--qAAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GH 567 (752)
T KOG0734|consen 496 -KIIARGTPGFSGADLANLVN--QAALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGH 567 (752)
T ss_pred -hHhccCCCCCchHHHHHHHH--HHHHHHHhcCcccccHHHHhhhhhheeecccccccccChhhhhhhhhhccCc
Confidence 89999999999999999999 6777666665 8999999999999999988887788877777777776654
No 3
>KOG0730|consensus
Probab=100.00 E-value=1.3e-40 Score=300.82 Aligned_cols=186 Identities=26% Similarity=0.374 Sum_probs=165.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
|+|||+|++++++|+.++++++.++| |++|+.++++|++|+..+ ||||||||||++++.|+++. ++...+++++||+
T Consensus 483 ~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~a-P~IiFfDEiDsi~~~R~g~~-~~v~~RVlsqLLt 560 (693)
T KOG0730|consen 483 LLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVA-PCIIFFDEIDALAGSRGGSS-SGVTDRVLSQLLT 560 (693)
T ss_pred HHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcC-CeEEehhhHHhHhhccCCCc-cchHHHHHHHHHH
Confidence 68999999999999999999999987 999999999999999998 99999999999999998544 4778899999999
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
+|| +...+|+|||+||||+.||+|++ ||||+.|+||+||.+.|++||+.+++++++. +++|+
T Consensus 561 EmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~-----------~~vdl--- 626 (693)
T KOG0730|consen 561 EMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFS-----------EDVDL--- 626 (693)
T ss_pred HcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCC-----------ccccH---
Confidence 997 45568999999999999999999 7999999999999999999999999986554 23566
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC----CCccHHHHHHHHHHHHHh
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYASED----GVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~----~~~~~~~~~~a~~~~~~~ 205 (242)
.+||+.|+|||||||.++|++ |+.++.++ ..++.++|++|+..+...
T Consensus 627 -~~La~~T~g~SGAel~~lCq~--A~~~a~~e~i~a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 627 -EELAQATEGYSGAEIVAVCQE--AALLALRESIEATEITWQHFEEALKAVRPS 677 (693)
T ss_pred -HHHHHHhccCChHHHHHHHHH--HHHHHHHHhcccccccHHHHHHHHHhhccc
Confidence 999999999999999999994 44444433 378999999999877544
No 4
>KOG0738|consensus
Probab=100.00 E-value=6.6e-40 Score=280.67 Aligned_cols=188 Identities=20% Similarity=0.320 Sum_probs=165.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
|||||+|.|||..||.|+.+.+.+|| |++|+.++-+|+.|+.++ |++|||||||+|+.+|++.+.++..+++.++||.
T Consensus 260 lLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyA-PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLv 338 (491)
T KOG0738|consen 260 LLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYA-PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLV 338 (491)
T ss_pred HHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhC-CceeehhhHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 79999999999999999999999999 999999999999999998 9999999999999999999999999999999999
Q ss_pred Hhcc---CCCC---eEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 80 RTGE---QSDK---FMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 80 ~l~~---~~~~---v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
+||. .... |+|+++||.||+||.||++||.+.|+||+|+.+.|..+++..|+...+. +++++
T Consensus 339 QmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-----------~~~~~- 406 (491)
T KOG0738|consen 339 QMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELD-----------DPVNL- 406 (491)
T ss_pred HhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCC-----------CCccH-
Confidence 9972 2223 8999999999999999999999999999999999999999999864332 34555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh--------------cC---CCccHHHHHHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYAS--------------ED---GVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~--------------~~---~~~~~~~~~~a~~~~~~ 204 (242)
+.||++++||||+||.++|++|-..+... ++ ..++..+|+.|+.++..
T Consensus 407 ---~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 407 ---EDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred ---HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 99999999999999999999765544431 11 25888899999887753
No 5
>KOG0733|consensus
Probab=100.00 E-value=5.7e-39 Score=287.45 Aligned_cols=189 Identities=25% Similarity=0.353 Sum_probs=163.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
|||||+|+|.|++|+.|.+++|++|| ||+|+.++++|..|+.++ ||||||||+|+|++.|+.++ .+...+++|+||+
T Consensus 560 LlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~sa-PCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLt 637 (802)
T KOG0733|consen 560 LLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASA-PCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLT 637 (802)
T ss_pred HHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCC-CeEEEecchhhcCcccCCCC-chhHHHHHHHHHH
Confidence 69999999999999999999999987 999999999999999998 99999999999999999877 6668899999999
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccccc-CCCChhH
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKV-APFDYTS 154 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~-~~~d~~~ 154 (242)
+|| +...+|+|||+||||+-||||++ ||||..+++++|+.++|..||+.+++. .+.++ +++|+
T Consensus 638 ElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn----------~k~pl~~dVdl-- 705 (802)
T KOG0733|consen 638 ELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN----------TKPPLSSDVDL-- 705 (802)
T ss_pred HhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhcc----------CCCCCCcccCH--
Confidence 998 45668999999999999999999 999999999999999999999999983 12333 34666
Q ss_pred hHHHHHHhCC--CCCHHHHHHHHHHHHHHHhhh--------cC--------CCccHHHHHHHHHHHHHh
Q psy4165 155 LCSKIAHVTE--GLSGREIAKLGVAWQASAYAS--------ED--------GVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 155 ~l~~la~~t~--g~s~adi~~lv~~a~~~~~~~--------~~--------~~~~~~~~~~a~~~~~~~ 205 (242)
+.||..+. |||||||..||++|...++.. .. -.++..+|++|++++...
T Consensus 706 --~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 706 --DEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred --HHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 99999887 999999999999554333321 00 046778999999887543
No 6
>KOG0733|consensus
Probab=100.00 E-value=1.3e-36 Score=272.26 Aligned_cols=161 Identities=25% Similarity=0.408 Sum_probs=145.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+||+|||+|+|+||+.++++++.+.+ |++|+.|+++|++|+.++ |||+||||||++.++|...+ .+-.++++.+||+
T Consensus 238 ~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~a-PcivFiDeIDAI~pkRe~aq-reMErRiVaQLlt 315 (802)
T KOG0733|consen 238 SLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNA-PCIVFIDEIDAITPKREEAQ-REMERRIVAQLLT 315 (802)
T ss_pred HHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccC-CeEEEeecccccccchhhHH-HHHHHHHHHHHHH
Confidence 58999999999999999999999976 999999999999999998 99999999999999998854 4446799999999
Q ss_pred Hhcc------CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 80 RTGE------QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 80 ~l~~------~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
.||+ .+.+|+||||||||+.|||+|+ ||||+.|.++.|+..+|.+||+...+++.+.+ ++|
T Consensus 316 ~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-----------~~d 384 (802)
T KOG0733|consen 316 SMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-----------DFD 384 (802)
T ss_pred hhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-----------CcC
Confidence 9972 2457999999999999999999 99999999999999999999999998765442 466
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHHHH
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGVAW 178 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~~a 178 (242)
+ ..||+.|+||+||||..||..|
T Consensus 385 ~----~qlA~lTPGfVGADL~AL~~~A 407 (802)
T KOG0733|consen 385 F----KQLAKLTPGFVGADLMALCREA 407 (802)
T ss_pred H----HHHHhcCCCccchhHHHHHHHH
Confidence 6 9999999999999999999833
No 7
>KOG0731|consensus
Probab=100.00 E-value=3e-36 Score=279.41 Aligned_cols=215 Identities=25% Similarity=0.317 Sum_probs=185.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccC---CCccchHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRS---SETISESLRATLNA 76 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~---~~~~~~~~~~~l~~ 76 (242)
|||||+|+|.|+||+.++++++...+ |.+..+++.+|..|+.++ ||||||||||+++..|+ ....+.+....+|+
T Consensus 359 LLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~a-P~iifideida~~~~r~G~~~~~~~~e~e~tlnQ 437 (774)
T KOG0731|consen 359 LLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNA-PSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQ 437 (774)
T ss_pred HHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccC-CeEEEecccccccccccccccCCCChHHHHHHHH
Confidence 69999999999999999999999864 777899999999999998 99999999999999995 22345567789999
Q ss_pred HHHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCCh
Q psy4165 77 FLYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDY 152 (242)
Q Consensus 77 lL~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~ 152 (242)
||.+|| ..+.+|+|+++||+++-||+|++ ||||+.|.+++|+..+|.+|++.|+++..+ ..+.+|+
T Consensus 438 ll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~----------~~e~~dl 507 (774)
T KOG0731|consen 438 LLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL----------DDEDVDL 507 (774)
T ss_pred HHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC----------CcchhhH
Confidence 999998 44567999999999999999999 999999999999999999999999987433 2234555
Q ss_pred hHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhhhhhhcccccCCCcccccCCCCCC
Q psy4165 153 TSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGVDKSSP 230 (242)
Q Consensus 153 ~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 230 (242)
..+|.+|+||+|+||.++|++|...+.+.....++..+++.|+++++.+...+......+....++||.+++.+
T Consensus 508 ----~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~ 581 (774)
T KOG0731|consen 508 ----SKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAV 581 (774)
T ss_pred ----HHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchh
Confidence 77999999999999999999666666666677999999999999999887666666666777788888777655
No 8
>KOG0736|consensus
Probab=100.00 E-value=1.9e-35 Score=270.38 Aligned_cols=187 Identities=20% Similarity=0.275 Sum_probs=162.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccc-hHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS-ESLRATLNAFL 78 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~-~~~~~~l~~lL 78 (242)
|||||+|.||+..|++|.++++.++| |++|.++|++|++|+..+ ||||||||+|+++|+|+..+++ +.+.+++++||
T Consensus 720 LlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~-PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLL 798 (953)
T KOG0736|consen 720 LLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAA-PCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLL 798 (953)
T ss_pred HHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccC-CeEEEeccccccCccCCCCCCccccHHHHHHHHH
Confidence 68999999999999999999999987 999999999999999887 9999999999999999887654 55889999999
Q ss_pred HHhcc----CCCCeEEEEecCCcccccHHHh--cccccEEEeCCC-CHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 79 YRTGE----QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLP-TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 79 ~~l~~----~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P-~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
.+||. ....|+||||||||+.|||||+ ||||+-++++++ |.+.+..+|+...+++.++ +++|
T Consensus 799 AELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-----------edVd 867 (953)
T KOG0736|consen 799 AELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-----------EDVD 867 (953)
T ss_pred HHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-----------CCcC
Confidence 99972 4457999999999999999999 999999999998 8899999999999875443 2355
Q ss_pred hhHhHHHHHHhC-CCCCHHHHHHHHHHHHHHHhhhc-------------CC----CccHHHHHHHHHHHH
Q psy4165 152 YTSLCSKIAHVT-EGLSGREIAKLGVAWQASAYASE-------------DG----VLTEAMVMSKVEDSI 203 (242)
Q Consensus 152 ~~~~l~~la~~t-~g~s~adi~~lv~~a~~~~~~~~-------------~~----~~~~~~~~~a~~~~~ 203 (242)
+ .++|+++ ..|||||+..+|.+|..++..+. .. .++++||.+++++..
T Consensus 868 L----~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~ 933 (953)
T KOG0736|consen 868 L----VEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQ 933 (953)
T ss_pred H----HHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcC
Confidence 5 9999999 56999999999998766655321 11 688999999887763
No 9
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-36 Score=273.11 Aligned_cols=213 Identities=24% Similarity=0.325 Sum_probs=185.1
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCC--ccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE--TISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~--~~~~~~~~~l~~l 77 (242)
|||||+|+|.++||+.++++++..++ |-+...+|.+|.+|++++ ||||||||||+++..|+.+ +.+.+..+.++++
T Consensus 198 LLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~a-P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQl 276 (596)
T COG0465 198 LLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNA-PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQL 276 (596)
T ss_pred HHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccC-CCeEEEehhhhcccccCCCCCCCchHHHHHHHHH
Confidence 69999999999999999999999976 999999999999999998 9999999999999998643 3355567899999
Q ss_pred HHHhccCC--CCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGEQS--DKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~~~--~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|.+||... .+|++|++||||+-+||||+ ||||+.|.++.||...|++|++.|+++.+++ .++|+
T Consensus 277 LvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-----------~~Vdl- 344 (596)
T COG0465 277 LVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-----------EDVDL- 344 (596)
T ss_pred HhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-----------CcCCH-
Confidence 99998554 67999999999999999999 8999999999999999999999999874433 34666
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhhhhhhcccccCCCcccccCCCCC
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGVDKSS 229 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (242)
..+|+.|.||+|+|+.+++++|-..+.......+++.++.+++++++.+..++...+....-...+||.+++.
T Consensus 345 ---~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEagha 417 (596)
T COG0465 345 ---KKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHA 417 (596)
T ss_pred ---HHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHH
Confidence 8899999999999999999954444444455599999999999999999887777777788888888866543
No 10
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=3.7e-35 Score=240.29 Aligned_cols=185 Identities=24% Similarity=0.377 Sum_probs=167.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccc-cchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~-~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
|+|||+|+++++||+.++.+.+... +|++.+.++++|+.|++.+ |||+||||+|+++-.|.-+.-.+....++|.||+
T Consensus 166 m~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~a-PcivFiDE~DAiaLdRryQelRGDVsEiVNALLT 244 (368)
T COG1223 166 MMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAA-PCIVFIDELDAIALDRRYQELRGDVSEIVNALLT 244 (368)
T ss_pred HHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcC-CeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHH
Confidence 6899999999999999999999975 5999999999999999998 9999999999999998877777788999999999
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHH
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCS 157 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~ 157 (242)
+|| +.+.+|+.|++||+|+.||+|+++||...|+|.+|+.++|.+|++.|.+++++.- +..+.
T Consensus 245 elDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv---------------~~~~~ 309 (368)
T COG1223 245 ELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV---------------DADLR 309 (368)
T ss_pred hccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc---------------ccCHH
Confidence 998 6677899999999999999999999999999999999999999999999876542 33358
Q ss_pred HHHHhCCCCCHHHHHHHH-HHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 158 KIAHVTEGLSGREIAKLG-VAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 158 ~la~~t~g~s~adi~~lv-~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
.++.+|.||||+||..-+ ..|...+.+.....++.+|++.|+.+
T Consensus 310 ~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 310 YLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 999999999999998655 56777788888889999999999987
No 11
>KOG0739|consensus
Probab=100.00 E-value=1.2e-35 Score=247.16 Aligned_cols=162 Identities=24% Similarity=0.390 Sum_probs=147.7
Q ss_pred hHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
||+|+|.|.|-.||.|+.++|+++| |++|+.++++|+.|+++. |+||||||||++++.|+.+. ++..+++..+||.+
T Consensus 182 LAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~k-PSIIFiDEiDslcg~r~enE-seasRRIKTEfLVQ 259 (439)
T KOG0739|consen 182 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENK-PSIIFIDEIDSLCGSRSENE-SEASRRIKTEFLVQ 259 (439)
T ss_pred HHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcC-CcEEEeehhhhhccCCCCCc-hHHHHHHHHHHHHh
Confidence 8999999999999999999999998 999999999999999998 99999999999999887765 77789999999999
Q ss_pred hc---cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHH
Q psy4165 81 TG---EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCS 157 (242)
Q Consensus 81 l~---~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~ 157 (242)
|. +.+.+|+|+|+||-||.||.|+++||++.|++|+|+...|..+|+.++...+ ..+.+-|+ .
T Consensus 260 MqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp----------~~LT~~d~----~ 325 (439)
T KOG0739|consen 260 MQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTP----------HVLTEQDF----K 325 (439)
T ss_pred hhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCc----------cccchhhH----H
Confidence 94 6677899999999999999999999999999999999999999999997643 23556666 9
Q ss_pred HHHHhCCCCCHHHHHHHHHHHH
Q psy4165 158 KIAHVTEGLSGREIAKLGVAWQ 179 (242)
Q Consensus 158 ~la~~t~g~s~adi~~lv~~a~ 179 (242)
+|++.|+||||+||.-+|+++.
T Consensus 326 eL~~kTeGySGsDisivVrDal 347 (439)
T KOG0739|consen 326 ELARKTEGYSGSDISIVVRDAL 347 (439)
T ss_pred HHHhhcCCCCcCceEEEehhhh
Confidence 9999999999999988887443
No 12
>KOG0728|consensus
Probab=100.00 E-value=3.6e-34 Score=233.74 Aligned_cols=189 Identities=21% Similarity=0.313 Sum_probs=167.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
|||+|+|++..|.|+.|+++++..+| |++.+.++++|-.|++++ |+|||+||||+++..|..++ +.++.++.+.+|
T Consensus 196 LlaraVahht~c~firvsgselvqk~igegsrmvrelfvmareha-psiifmdeidsigs~r~e~~~ggdsevqrtmlel 274 (404)
T KOG0728|consen 196 LLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLEL 274 (404)
T ss_pred HHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcC-CceEeeecccccccccccCCCCccHHHHHHHHHH
Confidence 68999999999999999999999877 999999999999999999 99999999999999886543 356688889999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|+++| +...+|-||++||+.+-|||||+ ||+|++|+||+|+.+.|.+||+.+-+++++. ..+++
T Consensus 275 lnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-----------rgi~l- 342 (404)
T KOG0728|consen 275 LNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-----------RGINL- 342 (404)
T ss_pred HHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-----------cccCH-
Confidence 99998 55668999999999999999999 8999999999999999999999999876554 23555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
..+|+...|.||++++.+|.+|-.-++..++-++|++||+-|+.++...
T Consensus 343 ---~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 343 ---RKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred ---HHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999999999999999999955555555666699999999999888754
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.9e-33 Score=255.32 Aligned_cols=190 Identities=19% Similarity=0.275 Sum_probs=165.5
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
++|++||+++|+||+.++++.+.+++ |+++.+++++|..|+..+ ||||||||||.++.++...+.++...+++++||+
T Consensus 274 llAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~-P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~ 352 (489)
T CHL00195 274 LTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALS-PCILWIDEIDKAFSNSESKGDSGTTNRVLATFIT 352 (489)
T ss_pred HHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcC-CcEEEehhhhhhhccccCCCCchHHHHHHHHHHH
Confidence 58999999999999999999998866 999999999999999888 9999999999999876655556778899999999
Q ss_pred HhccCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHH
Q psy4165 80 RTGEQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCS 157 (242)
Q Consensus 80 ~l~~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~ 157 (242)
+|+....+|+||+|||+++.||++++ ||||..|+|++|+.++|.+||+.|+.+.... ...++|+ +
T Consensus 353 ~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~---------~~~~~dl----~ 419 (489)
T CHL00195 353 WLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPK---------SWKKYDI----K 419 (489)
T ss_pred HHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCC---------cccccCH----H
Confidence 99877888999999999999999998 6999999999999999999999999874221 1234565 8
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 158 KIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 158 ~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
.+|+.|+||||+||+++|++|...++.. ...++.+++..++......
T Consensus 420 ~La~~T~GfSGAdI~~lv~eA~~~A~~~-~~~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 420 KLSKLSNKFSGAEIEQSIIEAMYIAFYE-KREFTTDDILLALKQFIPL 466 (489)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHhcCCC
Confidence 9999999999999999999766555543 3468999999999888653
No 14
>KOG0737|consensus
Probab=100.00 E-value=9.2e-34 Score=242.18 Aligned_cols=161 Identities=27% Similarity=0.415 Sum_probs=146.0
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
|||+|+|++.|++|+.|+.+.+.++| |++++.++.+|..|.+.+ ||||||||+|++++.| ..++++.+..+-++|+.
T Consensus 142 mlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~-P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~ 219 (386)
T KOG0737|consen 142 MLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQ-PSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMA 219 (386)
T ss_pred HHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcC-cceeehhhHHHHHhhc-ccchHHHHHHHHHHHHH
Confidence 69999999999999999999999987 999999999999999998 9999999999999999 55558888899999999
Q ss_pred Hhc----cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG----EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~----~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
.|| +.+..|+|+||||||.+||.|+++|+.+.++++.|+.++|++||+.+|++-.++ +++|+
T Consensus 220 ~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-----------~~vD~--- 285 (386)
T KOG0737|consen 220 LWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-----------DDVDL--- 285 (386)
T ss_pred HhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-----------cccCH---
Confidence 997 334469999999999999999999999999999999999999999999873332 34666
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAW 178 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a 178 (242)
..+|..|+||||+||+++|+.|
T Consensus 286 -~~iA~~t~GySGSDLkelC~~A 307 (386)
T KOG0737|consen 286 -DEIAQMTEGYSGSDLKELCRLA 307 (386)
T ss_pred -HHHHHhcCCCcHHHHHHHHHHH
Confidence 9999999999999999999843
No 15
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=9.5e-32 Score=239.31 Aligned_cols=191 Identities=23% Similarity=0.333 Sum_probs=164.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
++|+++|++++.+|+.+.++.+..++ |++++.++++|..|+..+ ||||||||+|.++.+|.+.. ......+.+.+|
T Consensus 194 ~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~-P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~L 272 (398)
T PTZ00454 194 MLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENA-PSIIFIDEVDSIATKRFDAQTGADREVQRILLEL 272 (398)
T ss_pred HHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcC-CeEEEEECHhhhccccccccCCccHHHHHHHHHH
Confidence 58999999999999999999988766 999999999999999887 99999999999998875433 233566788999
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|.+++. ...+++||+|||+++.|||+++ ||||.+|+|++|+.++|..||+.++.++++. .++|+
T Consensus 273 L~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-----------~dvd~- 340 (398)
T PTZ00454 273 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-----------EEVDL- 340 (398)
T ss_pred HHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-----------cccCH-
Confidence 999973 3457999999999999999998 6999999999999999999999999864332 24555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHK 207 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 207 (242)
..++..|+||||+||+++|++|...+.......++.+||.+|++++.....
T Consensus 341 ---~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~~~ 391 (398)
T PTZ00454 341 ---EDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRKTD 391 (398)
T ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhccc
Confidence 899999999999999999997766666666679999999999999876643
No 16
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-32 Score=248.68 Aligned_cols=187 Identities=23% Similarity=0.336 Sum_probs=163.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
|||+|+|++++.+|+.+..+++.++| |+++++++++|..|+..+ ||||||||+|++++.|+... .+...+++++||+
T Consensus 291 ~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~-p~iiFiDEiDs~~~~r~~~~-~~~~~r~~~~lL~ 368 (494)
T COG0464 291 LLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLA-PSIIFIDEIDSLASGRGPSE-DGSGRRVVGQLLT 368 (494)
T ss_pred HHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCC-CcEEEEEchhhhhccCCCCC-chHHHHHHHHHHH
Confidence 68999999999999999999999987 999999999999999888 99999999999999998765 3334789999999
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHhc--ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVND--RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~~--Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
+|+ +...+|+||+|||+|+.+|+|+++ |||..|+|++||.++|.+||+.++.+... ....++|+
T Consensus 369 ~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~---------~~~~~~~~--- 436 (494)
T COG0464 369 ELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKP---------PLAEDVDL--- 436 (494)
T ss_pred HhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCC---------cchhhhhH---
Confidence 996 666679999999999999999995 99999999999999999999999985211 11234555
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc-CCCccHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYASE-DGVLTEAMVMSKVEDS 202 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~~-~~~~~~~~~~~a~~~~ 202 (242)
+.+++.|+||||+||..+|++|...+.... ...++.+++..|+...
T Consensus 437 -~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~ 483 (494)
T COG0464 437 -EELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKI 483 (494)
T ss_pred -HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhc
Confidence 999999999999999999997766666655 5689999999999873
No 17
>KOG0652|consensus
Probab=99.98 E-value=4.9e-32 Score=222.41 Aligned_cols=192 Identities=21% Similarity=0.318 Sum_probs=170.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc--chHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI--SESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~--~~~~~~~l~~l 77 (242)
|+|||.|...+..|+.+-++.+..++ |++.+.++..|..|++.+ |+||||||+|+++.+|.+++. ..+.++.+.+|
T Consensus 220 lmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEka-P~IIFIDElDAIGtKRfDSek~GDREVQRTMLEL 298 (424)
T KOG0652|consen 220 LMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA-PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL 298 (424)
T ss_pred HHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccC-CeEEEEechhhhccccccccccccHHHHHHHHHH
Confidence 68999999999999999999999977 999999999999999988 999999999999999977653 34577888999
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|+++|. .+..|-||++||+.+-|||||+ ||+|++|+||.|+.+.|.+|++.|-++++.. ++++|
T Consensus 299 LNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-----------~DvNf- 366 (424)
T KOG0652|consen 299 LNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-----------DDVNF- 366 (424)
T ss_pred HHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-----------CCCCH-
Confidence 999984 4557999999999999999999 8999999999999999999999999875443 35666
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhhh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKM 208 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 208 (242)
++||+.|++|+|++.+.+|.+|-..++......++.++|++++..+......
T Consensus 367 ---eELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqakKka 418 (424)
T KOG0652|consen 367 ---EELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQAKKKA 418 (424)
T ss_pred ---HHHhhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999977777777777799999999999888654433
No 18
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.98 E-value=2.9e-31 Score=253.84 Aligned_cols=188 Identities=20% Similarity=0.326 Sum_probs=161.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
++|+++|++++++|+.++++++.++| |++++.++++|..|+... ||||||||+|.+++.|+.........+++++||+
T Consensus 502 ~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~-p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~ 580 (733)
T TIGR01243 502 LLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAA-PAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLT 580 (733)
T ss_pred HHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcC-CEEEEEEChhhhhccCCCCCCccHHHHHHHHHHH
Confidence 58999999999999999999999876 999999999999999888 9999999999999988765545567789999999
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
+|+ ....+++||+|||+|+.||++++ ||||..|++|+|+.++|.+||+.++++.++. .++|+
T Consensus 581 ~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-----------~~~~l--- 646 (733)
T TIGR01243 581 EMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-----------EDVDL--- 646 (733)
T ss_pred HhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-----------ccCCH---
Confidence 997 35668999999999999999999 6999999999999999999999998764332 23555
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhh------------------cCCCccHHHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYAS------------------EDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~------------------~~~~~~~~~~~~a~~~~~~ 204 (242)
..+|+.|+||||+||.++|+.|...+... ....++.+||.+|+.+...
T Consensus 647 -~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~p 712 (733)
T TIGR01243 647 -EELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKP 712 (733)
T ss_pred -HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCC
Confidence 89999999999999999999665444331 0126889999999976643
No 19
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.97 E-value=1.8e-31 Score=263.17 Aligned_cols=187 Identities=11% Similarity=0.155 Sum_probs=153.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc------------------------------------------chHHH--HHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG------------------------------------------SSGVT--AIHKV 36 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~------------------------------------------g~~e~--~l~~~ 36 (242)
+||||+|+++++||+.++++++.+++ ++++. .++.+
T Consensus 1645 lLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~l 1724 (2281)
T CHL00206 1645 YLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMDMMPKIDRFYITLQ 1724 (2281)
T ss_pred HHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhhhhhhhhhhHHHHHHH
Confidence 58999999999999999999987532 12333 48999
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhcc-----CCCCeEEEEecCCcccccHHHh--cccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGE-----QSDKFMLVLASNTPQQFDWAVN--DRLD 109 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~-----~~~~v~vI~tTn~~~~ld~al~--~Rfd 109 (242)
|+.|++++ ||||||||||+++.+.. ....+++||++|+. ...+|+||||||+|+.|||||+ ||||
T Consensus 1725 FelARk~S-PCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFD 1796 (2281)
T CHL00206 1725 FELAKAMS-PCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLN 1796 (2281)
T ss_pred HHHHHHCC-CeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCC
Confidence 99999998 99999999999987521 12347888899863 2457999999999999999999 7999
Q ss_pred cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccC--CCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 110 EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVA--PFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 110 ~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~--~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
+.|+++.|+..+|++++..++... ++.++ .+|+ +.+|+.|.|||||||.+||++|...+...+.
T Consensus 1797 R~I~Ir~Pd~p~R~kiL~ILl~tk----------g~~L~~~~vdl----~~LA~~T~GfSGADLanLvNEAaliAirq~k 1862 (2281)
T CHL00206 1797 TCIKIRRLLIPQQRKHFFTLSYTR----------GFHLEKKMFHT----NGFGSITMGSNARDLVALTNEALSISITQKK 1862 (2281)
T ss_pred eEEEeCCCCchhHHHHHHHHHhhc----------CCCCCcccccH----HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999998654321 12222 2455 8999999999999999999987777777888
Q ss_pred CCccHHHHHHHHHHHHHhhhhh
Q psy4165 188 GVLTEAMVMSKVEDSIRAHKMK 209 (242)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~ 209 (242)
..++..++..|++++..+...+
T Consensus 1863 s~Id~~~I~~Al~Rq~~g~~~~ 1884 (2281)
T CHL00206 1863 SIIDTNTIRSALHRQTWDLRSQ 1884 (2281)
T ss_pred CccCHHHHHHHHHHHHhhhhhc
Confidence 8999999999999998775544
No 20
>KOG0735|consensus
Probab=99.97 E-value=1.2e-31 Score=243.70 Aligned_cols=166 Identities=23% Similarity=0.377 Sum_probs=148.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+||.|+|..+++.|+.|.++++.+|| |.+|.+++.+|+.|+..+ |||+||||+|+++|+|+..+ .+...+++|+||+
T Consensus 716 ~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~-PCiLFFDEfdSiAPkRGhDs-TGVTDRVVNQlLT 793 (952)
T KOG0735|consen 716 LLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAK-PCILFFDEFDSIAPKRGHDS-TGVTDRVVNQLLT 793 (952)
T ss_pred HHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccC-CeEEEeccccccCcccCCCC-CCchHHHHHHHHH
Confidence 58999999999999999999999988 999999999999999887 99999999999999998876 5668899999999
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
+|| +.-.+|.|+|+|.||+.|||||+ ||+|+.++-++|+..+|.+|++.....+.. .+++|+
T Consensus 794 elDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-----------~~~vdl--- 859 (952)
T KOG0735|consen 794 ELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-----------DTDVDL--- 859 (952)
T ss_pred hhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-----------ccccch---
Confidence 997 44558999999999999999999 899999999999999999999998765322 234565
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAY 183 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~ 183 (242)
+.+|..|+|||||||+.|+-.|..++.
T Consensus 860 -~~~a~~T~g~tgADlq~ll~~A~l~av 886 (952)
T KOG0735|consen 860 -ECLAQKTDGFTGADLQSLLYNAQLAAV 886 (952)
T ss_pred -HHHhhhcCCCchhhHHHHHHHHHHHHH
Confidence 999999999999999999987665543
No 21
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=1.7e-31 Score=245.27 Aligned_cols=189 Identities=24% Similarity=0.358 Sum_probs=160.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
++|+++|+++++||+.++++++.+.+ |.+++.++.+|..|+..+ ||||||||+|.++.++.... ......+.+++|
T Consensus 103 ~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~-p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 181 (495)
T TIGR01241 103 LLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNA-PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQL 181 (495)
T ss_pred HHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcC-CCEEEEechhhhhhccccCcCCccHHHHHHHHHH
Confidence 48999999999999999999998865 899999999999999887 99999999999998876532 234466889999
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|.+|+. ..++++||+|||+|+.|||+++ +|||+.|++++|+.++|.+||+.++.+.+.. .++++
T Consensus 182 L~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-----------~~~~l- 249 (495)
T TIGR01241 182 LVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-----------PDVDL- 249 (495)
T ss_pred HhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-----------cchhH-
Confidence 999973 4457999999999999999999 6999999999999999999999999763221 23444
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
..+|..|.||||+||+++|++|...+.......++.++++.|+++...+
T Consensus 250 ---~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~ 298 (495)
T TIGR01241 250 ---KAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAG 298 (495)
T ss_pred ---HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999965444444455689999999999988754
No 22
>KOG0740|consensus
Probab=99.97 E-value=1.4e-31 Score=235.73 Aligned_cols=187 Identities=26% Similarity=0.336 Sum_probs=156.9
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
||++|||.|+++.|+.+++++|.+|| |++|+.++.+|..|+..+ |+||||||+|+++..| .++.++..++...+||.
T Consensus 201 mL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~q-PsvifidEidslls~R-s~~e~e~srr~ktefLi 278 (428)
T KOG0740|consen 201 MLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQ-PSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLL 278 (428)
T ss_pred HHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcC-CeEEEechhHHHHhhc-CCcccccchhhhhHHHh
Confidence 69999999999999999999999988 999999999999999887 9999999999999999 44446667888899988
Q ss_pred Hhc----cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG----EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~----~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
+++ ...++|+||||||+||.+|.++++||...++||+|+.+.|..+|+.++.+. ...+.+.|+
T Consensus 279 q~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~----------~~~l~~~d~--- 345 (428)
T KOG0740|consen 279 QFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ----------PNGLSDLDI--- 345 (428)
T ss_pred hhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC----------CCCccHHHH---
Confidence 875 445589999999999999999999999999999999999999999999873 233444555
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhh-------------cCCCccHHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYAS-------------EDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~-------------~~~~~~~~~~~~a~~~~~ 203 (242)
+.+++.|+|||++||..+|.+|...-... .-..++..++..+++.+.
T Consensus 346 -~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~ 405 (428)
T KOG0740|consen 346 -SLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIK 405 (428)
T ss_pred -HHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhc
Confidence 89999999999999999998553222211 112566667777766553
No 23
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=4.5e-31 Score=248.37 Aligned_cols=189 Identities=24% Similarity=0.350 Sum_probs=162.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCC--ccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE--TISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~--~~~~~~~~~l~~l 77 (242)
++|+++|+++++||+.++++++.+.+ |.+...++.+|..|+... ||||||||+|.++.+|+.. +.+....+.+++|
T Consensus 200 ~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~-P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~l 278 (644)
T PRK10733 200 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAA-PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQM 278 (644)
T ss_pred HHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcC-CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHH
Confidence 47999999999999999999998865 888999999999999887 9999999999999888653 2344566889999
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|.+|+. ...+++||+|||+|+.||++++ +|||+.|+|++|+.++|.+||+.|+.+.++. .++|+
T Consensus 279 L~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-----------~~~d~- 346 (644)
T PRK10733 279 LVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-----------PDIDA- 346 (644)
T ss_pred HHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-----------CcCCH-
Confidence 999973 3457999999999999999999 6999999999999999999999999875432 23555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
..+|+.|.||||+||.++|++|...+.......++..++++|++++..+
T Consensus 347 ---~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 347 ---AIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred ---HHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcc
Confidence 8899999999999999999966555555556689999999999887654
No 24
>KOG0726|consensus
Probab=99.97 E-value=8.4e-32 Score=223.79 Aligned_cols=189 Identities=19% Similarity=0.315 Sum_probs=166.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccc--hHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS--ESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~--~~~~~~l~~l 77 (242)
|||+|+|+...+.|+.+-++++..+| |++.+.++++|..|..++ |+|+||||||+++.+|-+.+.. .+.++.+.+|
T Consensus 234 LLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~a-pSIvFiDEIdAiGtKRyds~SggerEiQrtmLEL 312 (440)
T KOG0726|consen 234 LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA-PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLEL 312 (440)
T ss_pred HHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcC-CceEEeehhhhhccccccCCCccHHHHHHHHHHH
Confidence 69999999999999999999999877 999999999999999999 9999999999999999665533 3466778899
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|+++| ...+.|-||++||+.+.|||||+ ||+|++|+||.||...++.||..|..++.+. +++.+
T Consensus 313 LNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~-----------~dVnl- 380 (440)
T KOG0726|consen 313 LNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA-----------EDVNL- 380 (440)
T ss_pred HHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchh-----------ccccH-
Confidence 99997 44567999999999999999999 8999999999999999999999999864332 23555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+.+...-+.+|||||+++|.+|-..++...+-.++.+||.+|.+.+...
T Consensus 381 ---e~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 381 ---EELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYK 429 (440)
T ss_pred ---HHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 7888888889999999999977777777777799999999999998754
No 25
>KOG0727|consensus
Probab=99.97 E-value=7.1e-31 Score=214.72 Aligned_cols=189 Identities=22% Similarity=0.332 Sum_probs=168.0
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc--chHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI--SESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~--~~~~~~~l~~l 77 (242)
|||+|+|++..+.|+.|.++++..+| |++.+.++.+|..|++++ |+||||||+|+++.+|-+.+. ..+.++++-+|
T Consensus 204 ml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakena-psiifideidaiatkrfdaqtgadrevqril~el 282 (408)
T KOG0727|consen 204 MLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA-PSIIFIDEIDAIATKRFDAQTGADREVQRILIEL 282 (408)
T ss_pred HHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccC-CcEEEeehhhhHhhhhccccccccHHHHHHHHHH
Confidence 79999999999999999999999887 999999999999999998 999999999999999876543 34578899999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|| ....+|-||++||+.+.|||||+ ||+|++|+||+|+.-+++-+|.....++++. +++|+
T Consensus 283 lnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls-----------~~vdl- 350 (408)
T KOG0727|consen 283 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS-----------DEVDL- 350 (408)
T ss_pred HHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC-----------cccCH-
Confidence 99998 44567999999999999999999 8999999999999999999999999876554 34666
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+.+..+-+..||+||..+|++|-..+....+..+...+|+++-...++.
T Consensus 351 ---e~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk~ 399 (408)
T KOG0727|consen 351 ---EDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVKK 399 (408)
T ss_pred ---HHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcCC
Confidence 8999999999999999999977666666777799999999998877654
No 26
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=4.9e-30 Score=228.76 Aligned_cols=191 Identities=22% Similarity=0.359 Sum_probs=163.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc--chHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI--SESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~--~~~~~~~l~~l 77 (242)
++|+++|++++.+|+.++++++.+++ |++++.++.+|..|+..+ ||||||||+|.+++.|.+... .....+.+.+|
T Consensus 180 ~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~-p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~l 258 (389)
T PRK03992 180 LLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKA-PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQL 258 (389)
T ss_pred HHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcC-CeEEEEechhhhhcccccCCCCccHHHHHHHHHH
Confidence 48999999999999999999998866 999999999999999887 999999999999988765432 23456778889
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|.+++. ..++++||+|||+++.+|++++ ||||..|+|++|+.++|.+||+.++.++++. .++++
T Consensus 259 L~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-----------~~~~~- 326 (389)
T PRK03992 259 LAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-----------DDVDL- 326 (389)
T ss_pred HHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-----------CcCCH-
Confidence 888863 3457999999999999999999 6999999999999999999999999864332 23555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHK 207 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 207 (242)
..+|..|+||||+||+++|++|...+.......++.+||++|+..+.....
T Consensus 327 ---~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 327 ---EELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcccc
Confidence 899999999999999999997766666666678999999999999865433
No 27
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=2.1e-30 Score=242.04 Aligned_cols=192 Identities=21% Similarity=0.280 Sum_probs=161.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCC--ccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE--TISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~--~~~~~~~~~l~~l 77 (242)
+||+++|+++++||+.++++++...+ |.+...++.+|..|+... ||||||||+|.++..|+.. +.+....+.+++|
T Consensus 231 ~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~L 309 (638)
T CHL00176 231 LLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENS-PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQL 309 (638)
T ss_pred HHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCC-CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHH
Confidence 48999999999999999999998755 788889999999999887 9999999999999877543 2344566889999
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|.+|+. .+.+++||+|||+++.+|++++ ||||+.|+|++|+.++|.+||+.++++.... . +
T Consensus 310 L~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~-----------~----d 374 (638)
T CHL00176 310 LTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS-----------P----D 374 (638)
T ss_pred HhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc-----------h----h
Confidence 999973 3457999999999999999999 7999999999999999999999999862211 1 4
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhhh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKM 208 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 208 (242)
.++..+|..|.||||+||+++|++|...+.......++.+++..|+++++.+..+
T Consensus 375 ~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~ 429 (638)
T CHL00176 375 VSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEG 429 (638)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhcc
Confidence 4559999999999999999999965444444555689999999999998766443
No 28
>KOG0729|consensus
Probab=99.97 E-value=1.7e-30 Score=213.88 Aligned_cols=195 Identities=19% Similarity=0.321 Sum_probs=171.1
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
|+|||+|+..++.|+.|-++++..+| |++.+.++++|+.|+... -|||||||||++++.|-+.+ +..+.++.+.++
T Consensus 226 l~aravanrtdacfirvigselvqkyvgegarmvrelf~martkk-aciiffdeidaiggarfddg~ggdnevqrtmlel 304 (435)
T KOG0729|consen 226 LCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKK-ACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLEL 304 (435)
T ss_pred HHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccc-eEEEEeeccccccCccccCCCCCcHHHHHHHHHH
Confidence 58999999999999999999999876 999999999999999776 79999999999999997653 455678888999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
++++| ...++|-|+++||+|+.|||||+ ||+|++++|.+|+.+.|..||+.|.+.+... .++-|
T Consensus 305 i~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsve-----------rdir~- 372 (435)
T KOG0729|consen 305 INQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE-----------RDIRF- 372 (435)
T ss_pred HHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccc-----------cchhH-
Confidence 99997 56678999999999999999999 8999999999999999999999998764332 12334
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhhhhhh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVR 211 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 211 (242)
+-||+.|..-||++|+.+|.+|-.-+...++...|+.+|..|+++++.++.+...
T Consensus 373 ---ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av~kvvkgy~kfsa 427 (435)
T KOG0729|consen 373 ---ELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVKGYAKFSA 427 (435)
T ss_pred ---HHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccC
Confidence 7799999999999999999966666666778899999999999999999876544
No 29
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=1.7e-29 Score=226.49 Aligned_cols=189 Identities=21% Similarity=0.307 Sum_probs=162.5
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
++|+++|++++.+|+.+.++++.+++ |++++.++.+|..|+... ||||||||||.++.+|.... ......+.+.+|
T Consensus 232 ~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~L 310 (438)
T PTZ00361 232 LLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENA-PSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLEL 310 (438)
T ss_pred HHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCC-CcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHH
Confidence 58999999999999999999998866 999999999999999887 99999999999998875433 233456778889
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|.+++. ...++.||+|||+++.||++++ ||||++|+|++|+.++|.+||+.++.++.+. +++|+
T Consensus 311 L~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-----------~dvdl- 378 (438)
T PTZ00361 311 LNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-----------EDVDL- 378 (438)
T ss_pred HHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-----------cCcCH-
Confidence 999863 3557999999999999999998 7999999999999999999999999864332 34555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
..++..|+||||+||+++|++|...+.......++.+|+.+|++++...
T Consensus 379 ---~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 379 ---EEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred ---HHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhh
Confidence 8999999999999999999976666666666799999999999998654
No 30
>KOG0742|consensus
Probab=99.96 E-value=1.9e-28 Score=211.75 Aligned_cols=215 Identities=56% Similarity=0.925 Sum_probs=198.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
|+||-||.++|+.+-.+.+.++.-...+....|.++|+.|+...++-+|||||.|.|+..|+...+++..+..+|.||-.
T Consensus 399 m~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfR 478 (630)
T KOG0742|consen 399 MFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR 478 (630)
T ss_pred HHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHH
Confidence 68999999999999999999998877788889999999999998899999999999999999999999999999999988
Q ss_pred hccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcc------------cccccC
Q psy4165 81 TGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGK------------RRLKVA 148 (242)
Q Consensus 81 l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~------------~~~~~~ 148 (242)
-+..+..++++.+||+|.++|.|+..|||..|+||+|..++|..||..||.++-..+..+++ .++.++
T Consensus 479 TGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~ 558 (630)
T KOG0742|consen 479 TGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLA 558 (630)
T ss_pred hcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeec
Confidence 88888899999999999999999999999999999999999999999999998877777774 678888
Q ss_pred CCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhhhhhhccccc
Q psy4165 149 PFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQ 216 (242)
Q Consensus 149 ~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 216 (242)
.++++..|.+.|+.|+||||++|..|+..+++++++..+.+++...+.+.+...+.....+. |...+
T Consensus 559 ~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v~ykv~eHqqr~-~La~e 625 (630)
T KOG0742|consen 559 GFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERVDYKVQEHQQRM-WLAAE 625 (630)
T ss_pred cchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH-HHhhc
Confidence 88988899999999999999999999999999999999999999999999999888777666 55433
No 31
>KOG0730|consensus
Probab=99.96 E-value=1.2e-28 Score=223.48 Aligned_cols=180 Identities=22% Similarity=0.259 Sum_probs=154.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
++++|+|++.++.++.++++.+.+++ |++++++++.|++|..++.|+||||||+|+++++|...+. ..++++.++++
T Consensus 233 ~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqllt 310 (693)
T KOG0730|consen 233 FLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLT 310 (693)
T ss_pred HHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHH
Confidence 58999999999999999999999876 9999999999999998877999999999999999987663 57788999999
Q ss_pred Hhcc--CCCCeEEEEecCCcccccHHHh-cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhH
Q psy4165 80 RTGE--QSDKFMLVLASNTPQQFDWAVN-DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLC 156 (242)
Q Consensus 80 ~l~~--~~~~v~vI~tTn~~~~ld~al~-~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l 156 (242)
.|+. ..++++||++||+|+.||++++ ||||+.++++.|+..+|.+|++.++++++.. + +.++
T Consensus 311 L~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-----------~----~~~l 375 (693)
T KOG0730|consen 311 LLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-----------S----DVDL 375 (693)
T ss_pred HHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-----------c----hhhH
Confidence 9974 3478999999999999999999 6999999999999999999999999875432 2 3445
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 157 SKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 157 ~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
..+|..|.||+|+||..+|..|...+... +++++..|+...
T Consensus 376 ~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~A~~~i 416 (693)
T KOG0730|consen 376 EDIAVSTHGYVGADLAALCREASLQATRR-----TLEIFQEALMGI 416 (693)
T ss_pred HHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHHHHHHHhcC
Confidence 99999999999999999998554444332 566666665443
No 32
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=9e-28 Score=207.46 Aligned_cols=157 Identities=14% Similarity=0.154 Sum_probs=127.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhC----CCcEEEEEecccccccccCCCccchHHHHHH-
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSS----RKGLVLFIDEADAFLRKRSSETISESLRATL- 74 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~----~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l- 74 (242)
++|+|||+++|++++.+++++|.++| ||+|+.|+++|..|+.. .+||||||||||+++++|++.+ .....+++
T Consensus 163 llAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~-~tv~~qiV~ 241 (413)
T PLN00020 163 FQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ-YTVNNQMVN 241 (413)
T ss_pred HHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC-cchHHHHHH
Confidence 58999999999999999999999987 99999999999999853 2599999999999999987543 33334454
Q ss_pred HHHHHHhcc--------------CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchh
Q psy4165 75 NAFLYRTGE--------------QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPA 138 (242)
Q Consensus 75 ~~lL~~l~~--------------~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~ 138 (242)
.+||+.||. ...+|+||+|||+|+.|||+|+ ||||+.+ ..|+.++|.+||+.++++.++
T Consensus 242 ~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l--- 316 (413)
T PLN00020 242 GTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV--- 316 (413)
T ss_pred HHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC---
Confidence 789988763 2456999999999999999999 6999864 589999999999999986322
Q ss_pred hhcccccccCCCChhHhHHHHHHhCCC----CCHHHHHHHHH
Q psy4165 139 AQGKRRLKVAPFDYTSLCSKIAHVTEG----LSGREIAKLGV 176 (242)
Q Consensus 139 ~~~~~~~~~~~~d~~~~l~~la~~t~g----~s~adi~~lv~ 176 (242)
+ ..++..|++.+.| |.||--..++.
T Consensus 317 ---------~----~~dv~~Lv~~f~gq~~Df~GAlrar~yd 345 (413)
T PLN00020 317 ---------S----REDVVKLVDTFPGQPLDFFGALRARVYD 345 (413)
T ss_pred ---------C----HHHHHHHHHcCCCCCchhhhHHHHHHHH
Confidence 2 3445888888877 56665555554
No 33
>KOG0651|consensus
Probab=99.95 E-value=3e-28 Score=203.93 Aligned_cols=187 Identities=22% Similarity=0.367 Sum_probs=160.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch--HHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE--SLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~--~~~~~l~~l 77 (242)
++|+++|...|++|+.+..+.+.+++ ||+.+.|++.|..|+... ||||||||||++++++.++..+. ..++.+-++
T Consensus 181 lla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~-pciifmdeiDAigGRr~se~Ts~dreiqrTLMeL 259 (388)
T KOG0651|consen 181 LLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVI-PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMEL 259 (388)
T ss_pred HHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhC-ceEEeehhhhhhccEEeccccchhHHHHHHHHHH
Confidence 58999999999999999999999987 999999999999999998 99999999999999996665333 366778889
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|+ +.-++|-+|+|||+|+.|||+|+ ||.|+.+++|.|+...|..|++.+-..+.. ..++|+
T Consensus 260 lnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~-----------~Geid~- 327 (388)
T KOG0651|consen 260 LNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDF-----------HGEIDD- 327 (388)
T ss_pred HHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccc-----------cccccH-
Confidence 99997 45568999999999999999999 899999999999999999999988766433 245666
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh--cCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYAS--EDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~--~~~~~~~~~~~~a~~~~~~~ 205 (242)
+.+.+..+||.|+|+++.|. ++-.++. .+..+-.++++.++.++...
T Consensus 328 ---eaivK~~d~f~gad~rn~~t--Eag~Fa~~~~~~~vl~Ed~~k~vrk~~~~ 376 (388)
T KOG0651|consen 328 ---EAILKLVDGFNGADLRNVCT--EAGMFAIPEERDEVLHEDFMKLVRKQADA 376 (388)
T ss_pred ---HHHHHHHhccChHHHhhhcc--cccccccchhhHHHhHHHHHHHHHHHHHH
Confidence 89999999999999999999 4444443 33477788999988877543
No 34
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=9e-27 Score=206.51 Aligned_cols=186 Identities=25% Similarity=0.394 Sum_probs=158.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc--chHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI--SESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~--~~~~~~~l~~l 77 (242)
++|+++|++++.+|+.+.++++..++ |++...++.+|..++... |+||||||+|.++..+..... .....+.+.++
T Consensus 171 ~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~-p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~l 249 (364)
T TIGR01242 171 LLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKA-PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQL 249 (364)
T ss_pred HHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcC-CcEEEhhhhhhhccccccCCCCccHHHHHHHHHH
Confidence 48999999999999999998887765 899999999999999877 999999999999987754332 23456677888
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|.+++. ..+++.||+|||+++.+|++++ +|||+.|+|++|+.++|.+||+.++.+..+. .++++
T Consensus 250 l~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-----------~~~~~- 317 (364)
T TIGR01242 250 LAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-----------EDVDL- 317 (364)
T ss_pred HHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-----------ccCCH-
Confidence 888863 3468999999999999999999 6999999999999999999999998764322 23555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
..++..|+||+|+||+++|++|...+.......++.+|+.+|+..+
T Consensus 318 ---~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 318 ---EAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 8999999999999999999977777777777799999999999765
No 35
>KOG0741|consensus
Probab=99.94 E-value=6.7e-27 Score=207.31 Aligned_cols=192 Identities=20% Similarity=0.258 Sum_probs=159.9
Q ss_pred ChHHHHHHhcCC-cEEEEecCCccccc-chHHHHHHHHHHHHHhC-------CCcEEEEEecccccccccCCCcc-chHH
Q psy4165 1 MFAKKLAHHSGM-DYAIMTGGDVAPMG-SSGVTAIHKVFDWASSS-------RKGLVLFIDEADAFLRKRSSETI-SESL 70 (242)
Q Consensus 1 llA~aiA~e~~~-~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~-------~~p~Il~iDeiD~l~~~r~~~~~-~~~~ 70 (242)
|+||.|.+.+|+ +--.|+++++++|| |++|.+++++|..|.+- +.-.||+|||||++|.+|++..+ .+..
T Consensus 271 LiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVh 350 (744)
T KOG0741|consen 271 LIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVH 350 (744)
T ss_pred HHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCcc
Confidence 579999999887 56778999999987 99999999999988641 12589999999999999988664 5556
Q ss_pred HHHHHHHHHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccc
Q psy4165 71 RATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLK 146 (242)
Q Consensus 71 ~~~l~~lL~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~ 146 (242)
..++|+||..|| +.-++|+|||.|||.+.||.||+ |||..++++.+||++.|.+|++.|.+++.-+ ++-
T Consensus 351 D~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~-------~~l 423 (744)
T KOG0741|consen 351 DTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMREN-------NKL 423 (744)
T ss_pred HHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhc-------CCC
Confidence 789999999997 56678999999999999999999 8999999999999999999999999876322 233
Q ss_pred cCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh----c-----------CCCccHHHHHHHHHHHH
Q psy4165 147 VAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYAS----E-----------DGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 147 ~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~----~-----------~~~~~~~~~~~a~~~~~ 203 (242)
-+++|+ ++||.+|..||||+|+.||+.|..-+... . .-.++..||..|++.+.
T Consensus 424 ~~dVdl----~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVk 491 (744)
T KOG0741|consen 424 SADVDL----KELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVK 491 (744)
T ss_pred CCCcCH----HHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcC
Confidence 344565 99999999999999999999776555422 0 11688999999988653
No 36
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.93 E-value=1.2e-25 Score=204.29 Aligned_cols=203 Identities=19% Similarity=0.214 Sum_probs=148.2
Q ss_pred ChHHHHHHhcCCc----------EEEEecCCccccc-chHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCcc
Q psy4165 1 MFAKKLAHHSGMD----------YAIMTGGDVAPMG-SSGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETI 66 (242)
Q Consensus 1 llA~aiA~e~~~~----------~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~ 66 (242)
++|+++|++++.+ |+.++++++.+++ |++++.++.+|..|+.. ..||||||||+|.++.+|+.+..
T Consensus 231 ~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s 310 (512)
T TIGR03689 231 LIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS 310 (512)
T ss_pred HHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc
Confidence 4899999998654 6677888888876 99999999999999864 14999999999999998876544
Q ss_pred chHHHHHHHHHHHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhc-cccchhhhc
Q psy4165 67 SESLRATLNAFLYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDK-FVLQPAAQG 141 (242)
Q Consensus 67 ~~~~~~~l~~lL~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~-~~~~~~~~~ 141 (242)
++..+.++++||+.|+. ..++++||+|||+++.||||++ ||||.+|+|++|+.++|++||+.|+.+ +++......
T Consensus 311 ~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~ 390 (512)
T TIGR03689 311 SDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAE 390 (512)
T ss_pred chHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHH
Confidence 44456788999999973 3467999999999999999999 599999999999999999999999874 222111000
Q ss_pred ccccccCCCChhHhHHHHH-------------------------HhCCCCCHHHHHHHHHHHHHHHhh----hcCCCccH
Q psy4165 142 KRRLKVAPFDYTSLCSKIA-------------------------HVTEGLSGREIAKLGVAWQASAYA----SEDGVLTE 192 (242)
Q Consensus 142 ~~~~~~~~~d~~~~l~~la-------------------------~~t~g~s~adi~~lv~~a~~~~~~----~~~~~~~~ 192 (242)
.......++...+..+. ..++.+||++|+++|..|+..+.. .....++.
T Consensus 391 --~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~ 468 (512)
T TIGR03689 391 --FDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRI 468 (512)
T ss_pred --hcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCH
Confidence 00000111111111111 125678899999999877655542 23357888
Q ss_pred HHHHHHHHHHHHh
Q psy4165 193 AMVMSKVEDSIRA 205 (242)
Q Consensus 193 ~~~~~a~~~~~~~ 205 (242)
+++..|+......
T Consensus 469 ~~l~~a~~~e~~~ 481 (512)
T TIGR03689 469 EHLLAAVLDEFRE 481 (512)
T ss_pred HHHHHHHHHhhcc
Confidence 8888888766433
No 37
>KOG0732|consensus
Probab=99.91 E-value=5.3e-24 Score=202.93 Aligned_cols=166 Identities=22% Similarity=0.365 Sum_probs=141.1
Q ss_pred ChHHHHHHhcC-----CcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHH
Q psy4165 1 MFAKKLAHHSG-----MDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATL 74 (242)
Q Consensus 1 llA~aiA~e~~-----~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l 74 (242)
|.|+|+|..+. +.|+.-+++++.++| |+.|+.++.+|++|++.. |+|||+||||-+++.|++.. ......++
T Consensus 314 l~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~q-PSIIffdeIdGlapvrSskq-Eqih~SIv 391 (1080)
T KOG0732|consen 314 LMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQ-PSIIFFDEIDGLAPVRSSKQ-EQIHASIV 391 (1080)
T ss_pred HHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccC-ceEEeccccccccccccchH-HHhhhhHH
Confidence 47899998876 468888899999988 999999999999999998 99999999999999997754 22244667
Q ss_pred HHHHHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCC
Q psy4165 75 NAFLYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPF 150 (242)
Q Consensus 75 ~~lL~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~ 150 (242)
.+||.-|+ ...+.|+||||||||+.+|||++ ||||+.++|++|+.+.|..|+..+..+.... +
T Consensus 392 STLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~-------------i 458 (1080)
T KOG0732|consen 392 STLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPP-------------I 458 (1080)
T ss_pred HHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCC-------------C
Confidence 88888886 56678999999999999999998 8999999999999999999999999875321 1
Q ss_pred ChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q psy4165 151 DYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYA 184 (242)
Q Consensus 151 d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~ 184 (242)
. ...+..+|+.|.||-|+||+.+|. +|+..+
T Consensus 459 ~-~~l~~~la~~t~gy~gaDlkaLCT--eAal~~ 489 (1080)
T KOG0732|consen 459 S-RELLLWLAEETSGYGGADLKALCT--EAALIA 489 (1080)
T ss_pred C-HHHHHHHHHhccccchHHHHHHHH--HHhhhh
Confidence 1 445688999999999999999998 444444
No 38
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=3.7e-23 Score=198.08 Aligned_cols=186 Identities=22% Similarity=0.332 Sum_probs=152.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+||++||++++.+++.++++++.+++ |+++..++.+|+.|.... |+||||||+|.+++++.... .+..++++++|+.
T Consensus 227 ~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~-p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~ 304 (733)
T TIGR01243 227 LLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENA-PSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLT 304 (733)
T ss_pred HHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcC-CcEEEeehhhhhcccccCCc-chHHHHHHHHHHH
Confidence 48999999999999999999998866 999999999999999887 99999999999998876543 3334677888888
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
.|+ ...++++||++||+++.||++++ +||+..+++++|+.++|.+||+.++..+.+. .+.++
T Consensus 305 ~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-----------~d~~l--- 370 (733)
T TIGR01243 305 LMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA-----------EDVDL--- 370 (733)
T ss_pred HhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-----------cccCH---
Confidence 886 34567999999999999999999 6999999999999999999999888753321 23444
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhh-------------------cCCCccHHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYAS-------------------EDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~-------------------~~~~~~~~~~~~a~~~~~ 203 (242)
+.++..|+||+++||..+|+.+...+... ..-.++.+++..++..+.
T Consensus 371 -~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ 436 (733)
T TIGR01243 371 -DKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVE 436 (733)
T ss_pred -HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhcc
Confidence 89999999999999999998654443321 111467788888877554
No 39
>KOG0736|consensus
Probab=99.75 E-value=2.8e-17 Score=151.85 Aligned_cols=199 Identities=15% Similarity=0.177 Sum_probs=152.9
Q ss_pred hHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH-
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY- 79 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~- 79 (242)
+++++|.++|+|++.++|.++.+.. +.+|..+...|..|+... |+|||+-++|.|...+.++. .-.....+..++.
T Consensus 447 ~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~-pavifl~~~dvl~id~dgge-d~rl~~~i~~~ls~ 524 (953)
T KOG0736|consen 447 VVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCS-PAVLFLRNLDVLGIDQDGGE-DARLLKVIRHLLSN 524 (953)
T ss_pred HHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcC-ceEEEEeccceeeecCCCch-hHHHHHHHHHHHhc
Confidence 6899999999999999999998765 788999999999999998 99999999999985544422 2223334444443
Q ss_pred Hhc-cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHH
Q psy4165 80 RTG-EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSK 158 (242)
Q Consensus 80 ~l~-~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 158 (242)
+.. ....+++||+||+..+.+++.+++-|-..|.++.|+.++|.+||++|+....++. +..++.
T Consensus 525 e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~---------------~v~~k~ 589 (953)
T KOG0736|consen 525 EDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQ---------------DVNLKQ 589 (953)
T ss_pred ccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccch---------------HHHHHH
Confidence 221 2445799999999999999999999999999999999999999999998644332 455599
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHh----hhc----------------CCCccHHHHHHHHHHHHHhh--------hhhh
Q psy4165 159 IAHVTEGLSGREIAKLGVAWQASAY----ASE----------------DGVLTEAMVMSKVEDSIRAH--------KMKV 210 (242)
Q Consensus 159 la~~t~g~s~adi~~lv~~a~~~~~----~~~----------------~~~~~~~~~~~a~~~~~~~~--------~~~~ 210 (242)
++.+|.|||.+|++.++...-.++. ... ...++++||.+++.+.-... -+++
T Consensus 590 ~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV 669 (953)
T KOG0736|consen 590 LARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNV 669 (953)
T ss_pred HHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCcc
Confidence 9999999999999999864411111 111 12789999999998664332 3346
Q ss_pred hcccccC
Q psy4165 211 RWQSEQE 217 (242)
Q Consensus 211 ~~~~~~~ 217 (242)
.|-|..+
T Consensus 670 ~WdDVGG 676 (953)
T KOG0736|consen 670 SWDDVGG 676 (953)
T ss_pred chhcccC
Confidence 6666554
No 40
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.75 E-value=2.2e-17 Score=125.01 Aligned_cols=114 Identities=29% Similarity=0.433 Sum_probs=98.7
Q ss_pred hHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
+|+++|+.++.+++.++++.+.+.+ +++++.+.++|..++...+||||||||+|.+++.. +..........+..|+..
T Consensus 14 l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~~~~~~~~~~L~~~ 92 (132)
T PF00004_consen 14 LARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSSSFEQRLLNQLLSL 92 (132)
T ss_dssp HHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccccccccccceeeec
Confidence 7999999999999999999998655 89999999999999877558999999999999988 333456677788888888
Q ss_pred hccCC---CCeEEEEecCCcccccHHHh-cccccEEEeCC
Q psy4165 81 TGEQS---DKFMLVLASNTPQQFDWAVN-DRLDEMVEFPL 116 (242)
Q Consensus 81 l~~~~---~~v~vI~tTn~~~~ld~al~-~Rfd~~i~~~~ 116 (242)
++... .+++||+|||.++.+|++++ +||+..|++|+
T Consensus 93 l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 93 LDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 86333 46999999999999999999 99999999974
No 41
>KOG0735|consensus
Probab=99.73 E-value=3e-16 Score=144.07 Aligned_cols=194 Identities=14% Similarity=0.169 Sum_probs=153.1
Q ss_pred hHHHHHHhcC----CcEEEEecCCcccc-cchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc-cchHHHHHHH
Q psy4165 2 FAKKLAHHSG----MDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET-ISESLRATLN 75 (242)
Q Consensus 2 lA~aiA~e~~----~~~~~v~~~~l~~~-~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~-~~~~~~~~l~ 75 (242)
||+++++++. +++..++|+.+... .....+.++.+|.+|-.++ |+||++|++|.+++..++++ ..+.....+.
T Consensus 447 L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~-PSiIvLDdld~l~~~s~~e~~q~~~~~~rla 525 (952)
T KOG0735|consen 447 LVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYA-PSIIVLDDLDCLASASSNENGQDGVVSERLA 525 (952)
T ss_pred HHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhC-CcEEEEcchhhhhccCcccCCcchHHHHHHH
Confidence 7899998865 56788999998753 4666788999999999888 99999999999998443332 2344556667
Q ss_pred HHHHHh----ccCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC
Q psy4165 76 AFLYRT----GEQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149 (242)
Q Consensus 76 ~lL~~l----~~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~ 149 (242)
.||+++ ...+..|.||+|.+....|+|-|. ++|+.++.++.|+..+|.+||+..+++.... ..
T Consensus 526 ~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~----------~~- 594 (952)
T KOG0735|consen 526 AFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSD----------IT- 594 (952)
T ss_pred HHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhh----------hh-
Confidence 777665 356667899999999999999999 8999999999999999999999999863211 11
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh----cCCCccHHHHHHHHHHHHHhhhhhh
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYAS----EDGVLTEAMVMSKVEDSIRAHKMKV 210 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~ 210 (242)
..+|+-++..|+||.+.|+.-+|.+|...++-. ....+|.++|.++++.+.....+..
T Consensus 595 ---~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~i 656 (952)
T KOG0735|consen 595 ---MDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGI 656 (952)
T ss_pred ---hHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhc
Confidence 223456999999999999999999887777622 2228999999999999876655543
No 42
>KOG0744|consensus
Probab=99.72 E-value=1.5e-16 Score=134.66 Aligned_cols=202 Identities=18% Similarity=0.213 Sum_probs=150.0
Q ss_pred hHHHHHHhcCC---------cEEEEecCCccccc-chHHHHHHHHHHHHHhCC--C--cEEEEEecccccccccCC---C
Q psy4165 2 FAKKLAHHSGM---------DYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSR--K--GLVLFIDEADAFLRKRSS---E 64 (242)
Q Consensus 2 lA~aiA~e~~~---------~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~--~--p~Il~iDeiD~l~~~r~~---~ 64 (242)
|+||+|..+.+ .++++++..+.+|| +|+-+.+.++|++..+.- + -..++|||+++++..|.+ .
T Consensus 193 LCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~ 272 (423)
T KOG0744|consen 193 LCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSR 272 (423)
T ss_pred HHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcC
Confidence 78999998764 57899999999998 999999999999887642 1 356789999999988733 3
Q ss_pred ccchHHHHHHHHHHHHhc--cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccch---hh
Q psy4165 65 TISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQP---AA 139 (242)
Q Consensus 65 ~~~~~~~~~l~~lL~~l~--~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~---~~ 139 (242)
+...+.-+++|.+|++|| ....+|++++|+|-.+.||.|+..|-|.+.++++|+.+.|.+|++..+..+-... ..
T Consensus 273 ~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~ 352 (423)
T KOG0744|consen 273 NEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFH 352 (423)
T ss_pred CCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeee
Confidence 345567789999999998 5566788889999999999999999999999999999999999999987642111 00
Q ss_pred hcccccccCCCCh-hHhHHHHHHh-CCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhh
Q psy4165 140 QGKRRLKVAPFDY-TSLCSKIAHV-TEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAH 206 (242)
Q Consensus 140 ~~~~~~~~~~~d~-~~~l~~la~~-t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 206 (242)
....+.... ..+ ......+... +.|+||+-|+.|-. .+.+.-.+...++.+.|..++...++..
T Consensus 353 ~~s~~~~~~-i~~~~~~~~~~~~~~~~gLSGRtlrkLP~--Laha~y~~~~~v~~~~fl~al~ea~~k~ 418 (423)
T KOG0744|consen 353 QRSTGVKEF-IKYQKALRNILIELSTVGLSGRTLRKLPL--LAHAEYFRTFTVDLSNFLLALLEAAKKL 418 (423)
T ss_pred ccchhhhHH-hHhhHhHHHHHHHHhhcCCccchHhhhhH--HHHHhccCCCccChHHHHHHHHHHHHHH
Confidence 000001000 111 1122334444 48999999999875 3344444456899999999988877654
No 43
>CHL00181 cbbX CbbX; Provisional
Probab=99.60 E-value=2.2e-14 Score=123.14 Aligned_cols=162 Identities=18% Similarity=0.189 Sum_probs=116.7
Q ss_pred ChHHHHHHhcC-------CcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHH
Q psy4165 1 MFAKKLAHHSG-------MDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 1 llA~aiA~e~~-------~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
++|+++|+.+. .+++.++.+++.+.+ |+++.....+|+.|. ++||||||+|.+...++.. .....
T Consensus 74 ~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~----ggVLfIDE~~~l~~~~~~~---~~~~e 146 (287)
T CHL00181 74 TVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM----GGVLFIDEAYYLYKPDNER---DYGSE 146 (287)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc----CCEEEEEccchhccCCCcc---chHHH
Confidence 47899988742 369999999988755 888777888888864 6899999999997643321 22356
Q ss_pred HHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccccc
Q psy4165 73 TLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKV 147 (242)
Q Consensus 73 ~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~ 147 (242)
.+..|+..|+...++++||++++... .++|++.+||+..|+|++++.+++.+|++.++.+... .+
T Consensus 147 ~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~----------~l 216 (287)
T CHL00181 147 AIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQY----------QL 216 (287)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcC----------CC
Confidence 77888888877777788888876421 3469999999999999999999999999999987422 22
Q ss_pred CCCChhHhHHHHHHhC--CCCC-HHHHHHHHHHHH
Q psy4165 148 APFDYTSLCSKIAHVT--EGLS-GREIAKLGVAWQ 179 (242)
Q Consensus 148 ~~~d~~~~l~~la~~t--~g~s-~adi~~lv~~a~ 179 (242)
++-.....++.+.+.. +.|. ++++++++..+.
T Consensus 217 ~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 217 TPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred ChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 2211222233344332 3455 899999997543
No 44
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.1e-13 Score=127.44 Aligned_cols=186 Identities=22% Similarity=0.280 Sum_probs=151.1
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
++++++|.+ +.+++.++++.+.+++ |+++..++.+|..++..+ |+++++||+|.+.+.+.. ........++.+++.
T Consensus 33 ~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~ii~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~ 109 (494)
T COG0464 33 LLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLA-PSIIFIDEIDALAPKRSS-DQGEVERRVVAQLLA 109 (494)
T ss_pred HHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhC-CCeEeechhhhcccCccc-cccchhhHHHHHHHH
Confidence 468889988 7777888899988876 999999999999999998 899999999999999888 435556778888888
Q ss_pred HhccC-CCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhH
Q psy4165 80 RTGEQ-SDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLC 156 (242)
Q Consensus 80 ~l~~~-~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l 156 (242)
.++.. ...+++++.||++..+|++++ +||+..++++.|+...|.+|+......+... ...+.
T Consensus 110 ~~d~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~-----------~~~~~---- 174 (494)
T COG0464 110 LMDGLKRGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLG-----------PPGTG---- 174 (494)
T ss_pred hcccccCCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCc-----------ccccH----
Confidence 87521 334888899999999999999 8999999999999999999999998754322 13444
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhhhc------CCCccHHHHHHHHHHHHH
Q psy4165 157 SKIAHVTEGLSGREIAKLGVAWQASAYASE------DGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 157 ~~la~~t~g~s~adi~~lv~~a~~~~~~~~------~~~~~~~~~~~a~~~~~~ 204 (242)
..++..+.||+++|+..++..+........ ...++.+++.++++.+..
T Consensus 175 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 175 KTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 899999999999999999975433333222 226788888888887643
No 45
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.56 E-value=6.6e-14 Score=134.40 Aligned_cols=184 Identities=13% Similarity=0.090 Sum_probs=126.7
Q ss_pred hHHHHHHhc----------CCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
+|+++|..+ ++.++.++++.+.. ++ |+.+..++++|+.++... |+||||||+|.+++.+...+++.
T Consensus 219 l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~-~~ILfiDEih~l~~~g~~~~~~~ 297 (731)
T TIGR02639 219 IAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEP-NAILFIDEIHTIVGAGATSGGSM 297 (731)
T ss_pred HHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccC-CeEEEEecHHHHhccCCCCCccH
Confidence 688888887 78899999988873 44 999999999999998776 89999999999998654333222
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCc-----ccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccc
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTP-----QQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKR 143 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~-----~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~ 143 (242)
... +.|...+. ++.+.+||+||.. ..+|+++.+||+ .|+|+.|+.+++.+||+....++... .
T Consensus 298 ~~~---~~L~~~l~--~g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~------~ 365 (731)
T TIGR02639 298 DAS---NLLKPALS--SGKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEF------H 365 (731)
T ss_pred HHH---HHHHHHHh--CCCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhc------c
Confidence 222 22333333 5679999999863 468999999997 79999999999999999877653211 1
Q ss_pred ccccCCCChhHhHHHHHHhCCCCCHH-----HHHHHHHHHHHHHhhh----cCCCccHHHHHHHHHHH
Q psy4165 144 RLKVAPFDYTSLCSKIAHVTEGLSGR-----EIAKLGVAWQASAYAS----EDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 144 ~~~~~~~d~~~~l~~la~~t~g~s~a-----di~~lv~~a~~~~~~~----~~~~~~~~~~~~a~~~~ 202 (242)
++..+ +..+..++..+..|-+. ---.++.+|.+..... ....++.+++...+...
T Consensus 366 ~v~i~----~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 366 HVKYS----DEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKM 429 (731)
T ss_pred CcccC----HHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHH
Confidence 11112 34456777777666543 2234555333322211 12357777777776665
No 46
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.53 E-value=2.4e-13 Score=116.69 Aligned_cols=126 Identities=20% Similarity=0.214 Sum_probs=99.8
Q ss_pred ChHHHHHHhcC-------CcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHH
Q psy4165 1 MFAKKLAHHSG-------MDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 1 llA~aiA~e~~-------~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
++|+++|..+. -+++.++++++.+.+ |+++..++.+|++|. ++||||||+|.+.+.+.. ......
T Consensus 73 ~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~----~gvL~iDEi~~L~~~~~~---~~~~~~ 145 (284)
T TIGR02880 73 TVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM----GGVLFIDEAYYLYRPDNE---RDYGQE 145 (284)
T ss_pred HHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc----CcEEEEechhhhccCCCc---cchHHH
Confidence 36878777653 279999998888755 888888889998875 699999999999754332 222346
Q ss_pred HHHHHHHHhccCCCCeEEEEecCC--ccc---ccHHHhcccccEEEeCCCCHHHHHHHHHHHHhcc
Q psy4165 73 TLNAFLYRTGEQSDKFMLVLASNT--PQQ---FDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKF 133 (242)
Q Consensus 73 ~l~~lL~~l~~~~~~v~vI~tTn~--~~~---ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~ 133 (242)
.+..|+..|+....+++||++++. ++. ++|+|.+||+..|+||+++.+++.+|++.++.+.
T Consensus 146 ~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 146 AIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 677888888777778888888754 333 4799999999999999999999999999999874
No 47
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.52 E-value=4.3e-13 Score=113.83 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=98.5
Q ss_pred ChHHHHHHhc---C----CcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHH
Q psy4165 1 MFAKKLAHHS---G----MDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 1 llA~aiA~e~---~----~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
++|+++|+++ + .+++.++++++.+.+ |+++..++++|+.|. ++||||||+|.|... .. ......
T Consensus 57 tlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~----~~VL~IDE~~~L~~~--~~--~~~~~~ 128 (261)
T TIGR02881 57 TVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL----GGVLFIDEAYSLARG--GE--KDFGKE 128 (261)
T ss_pred HHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc----CCEEEEechhhhccC--Cc--cchHHH
Confidence 4788998863 2 378899999998866 999999999998875 689999999999632 11 122356
Q ss_pred HHHHHHHHhccCCCCeEEEEecCC-----cccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 73 TLNAFLYRTGEQSDKFMLVLASNT-----PQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 73 ~l~~lL~~l~~~~~~v~vI~tTn~-----~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
.+..|+..|+...+.+++|++++. ...++|++.+||+..|+||.++.+++.+|++.++..
T Consensus 129 ~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 129 AIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred HHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 778899999877777777776543 234788999999999999999999999999999975
No 48
>KOG0743|consensus
Probab=99.50 E-value=2.4e-13 Score=120.15 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=111.8
Q ss_pred hHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc-----c-hHHHHHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI-----S-ESLRATLN 75 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~-----~-~~~~~~l~ 75 (242)
++-|+|++++..++.++.+.+.. +++ |+.++..+.. .+||+|+|||+-+..+..... . ....-.++
T Consensus 251 ~IaAmAn~L~ydIydLeLt~v~~---n~d--Lr~LL~~t~~---kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlS 322 (457)
T KOG0743|consen 251 FIAAMANYLNYDIYDLELTEVKL---DSD--LRHLLLATPN---KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLS 322 (457)
T ss_pred HHHHHHhhcCCceEEeeeccccC---cHH--HHHHHHhCCC---CcEEEEeecccccccccccccccccccCCcceeehH
Confidence 57899999999999998877632 333 8888887763 499999999998764433221 1 11234577
Q ss_pred HHHHHhc----cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC
Q psy4165 76 AFLYRTG----EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149 (242)
Q Consensus 76 ~lL~~l~----~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~ 149 (242)
-||+.+| ..++.-++|+|||+++.|||||+ ||.|.+|+++..+.++-+.+++.||.-- ++
T Consensus 323 GLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~--------------~~ 388 (457)
T KOG0743|consen 323 GLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIE--------------ED 388 (457)
T ss_pred HhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCC--------------CC
Confidence 7888886 34445699999999999999999 7999999999999999999999999631 01
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHH
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLG 175 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv 175 (242)
.++-..++.+...++ .||||+...+
T Consensus 389 h~L~~eie~l~~~~~-~tPA~V~e~l 413 (457)
T KOG0743|consen 389 HRLFDEIERLIEETE-VTPAQVAEEL 413 (457)
T ss_pred cchhHHHHHHhhcCc-cCHHHHHHHH
Confidence 233333344444444 7999998765
No 49
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.48 E-value=4.8e-13 Score=116.59 Aligned_cols=197 Identities=17% Similarity=0.183 Sum_probs=140.1
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCC---CcEEEEEecccccccccCCCccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSR---KGLVLFIDEADAFLRKRSSETISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~---~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~l 77 (242)
.||+.||+.++++|..+++.. .+.+.++++|+.|+... +..|||+|||+.|-. .....|
T Consensus 63 TlA~liA~~~~~~f~~~sAv~------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK------------~QQD~l 124 (436)
T COG2256 63 TLARLIAGTTNAAFEALSAVT------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK------------AQQDAL 124 (436)
T ss_pred HHHHHHHHhhCCceEEecccc------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh------------hhhhhh
Confidence 389999999999999999865 46789999999997654 259999999999943 233567
Q ss_pred HHHhccCCCCeEEEEec--CCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCCh-hH
Q psy4165 78 LYRTGEQSDKFMLVLAS--NTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDY-TS 154 (242)
Q Consensus 78 L~~l~~~~~~v~vI~tT--n~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~-~~ 154 (242)
|-.++ ++.|++|||| |....|.+||++|.. ++++.+.+.++..++++.-+.... +++....+.+ +.
T Consensus 125 Lp~vE--~G~iilIGATTENPsF~ln~ALlSR~~-vf~lk~L~~~di~~~l~ra~~~~~--------rgl~~~~~~i~~~ 193 (436)
T COG2256 125 LPHVE--NGTIILIGATTENPSFELNPALLSRAR-VFELKPLSSEDIKKLLKRALLDEE--------RGLGGQIIVLDEE 193 (436)
T ss_pred hhhhc--CCeEEEEeccCCCCCeeecHHHhhhhh-eeeeecCCHHHHHHHHHHHHhhhh--------cCCCcccccCCHH
Confidence 77775 6678999877 889999999999985 899999999999999999543321 1222112222 22
Q ss_pred hHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCC-CccHHHHHHHHHHHHHhhhhhhhcccccCCCcccccCCCCCCC
Q psy4165 155 LCSKIAHVTEGLSGREIAKLGVAWQASAYASEDG-VLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGVDKSSPS 231 (242)
Q Consensus 155 ~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 231 (242)
.++.++.. +.+|.+.+++.++.+..+.+.+ .++.+.+++.+++..... .+.....++-..+...+..||.|.
T Consensus 194 a~~~l~~~----s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~-Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 194 ALDYLVRL----SNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARF-DKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred HHHHHHHh----cCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHhhccCCcC
Confidence 33555555 6679999999888887776555 455777777777665432 233344444444555556666554
No 50
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.47 E-value=1.6e-12 Score=124.34 Aligned_cols=183 Identities=13% Similarity=0.114 Sum_probs=121.6
Q ss_pred hHHHHHHhc----------CCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
+|+++|... ++.++.++.+.+.. ++ |+.+..++.+|..++... |+||||||+|.+++.+...+...
T Consensus 223 lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~-~~ILfIDEIh~L~g~g~~~~g~~ 301 (758)
T PRK11034 223 IAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDT-NSILFIDEIHTIIGAGAASGGQV 301 (758)
T ss_pred HHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcC-CCEEEeccHHHHhccCCCCCcHH
Confidence 677777653 66777777776652 44 899999999999998776 89999999999998765433222
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccc
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKR 143 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~ 143 (242)
....++..+| ..+.+.+||+||.++ ..|++|.+||+ .|+++.|+.+++..||+.+..++....
T Consensus 302 d~~nlLkp~L-----~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h------ 369 (758)
T PRK11034 302 DAANLIKPLL-----SSGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHH------ 369 (758)
T ss_pred HHHHHHHHHH-----hCCCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhcc------
Confidence 2333333333 356799999999865 57999999997 899999999999999999877653321
Q ss_pred ccccCCCChhHhHHHHHHhCC-----CCCHHHHHHHHHHHHHHHhh----hcCCCccHHHHHHHHHH
Q psy4165 144 RLKVAPFDYTSLCSKIAHVTE-----GLSGREIAKLGVAWQASAYA----SEDGVLTEAMVMSKVED 201 (242)
Q Consensus 144 ~~~~~~~d~~~~l~~la~~t~-----g~s~adi~~lv~~a~~~~~~----~~~~~~~~~~~~~a~~~ 201 (242)
++..+ +..+..++..+. .+-|...-.++.+|.+...- .....++.+++.+.+.+
T Consensus 370 ~v~i~----~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~ 432 (758)
T PRK11034 370 DVRYT----AKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVAR 432 (758)
T ss_pred CCCcC----HHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHH
Confidence 12112 222233333332 35566777777755433211 11224666666665443
No 51
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.40 E-value=2.7e-12 Score=124.03 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=91.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCcc---------ccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVA---------PMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~---------~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
++|++||++++.+++.++.+.+. ..| |.....+.+.|..+...+ | ||||||||.+.+...+ + .
T Consensus 362 ~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~-~-villDEidk~~~~~~~-~----~ 434 (775)
T TIGR00763 362 SLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKN-P-LFLLDEIDKIGSSFRG-D----P 434 (775)
T ss_pred HHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCC-C-EEEEechhhcCCccCC-C----H
Confidence 47999999999999999866442 123 666677888888887665 5 8899999999854221 1 1
Q ss_pred HHHHHHHHHHhcc---------------CCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHh
Q psy4165 71 RATLNAFLYRTGE---------------QSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFD 131 (242)
Q Consensus 71 ~~~l~~lL~~l~~---------------~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~ 131 (242)
.+.||..|+. ..+++++|+|||.++.||++|++||+ .|+|+.|+.+++.+|++.|+.
T Consensus 435 ---~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 435 ---ASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred ---HHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCee-EEecCCCCHHHHHHHHHHHHH
Confidence 1233333321 12478999999999999999999996 899999999999999999884
No 52
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.38 E-value=3.9e-11 Score=105.12 Aligned_cols=170 Identities=19% Similarity=0.242 Sum_probs=118.5
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
.||+++|++++.++..++++.+. ....+..++... ..++||||||+|.+... ....+..++..
T Consensus 66 ~la~~ia~~l~~~~~~~~~~~~~-----~~~~l~~~l~~l---~~~~vl~IDEi~~l~~~---------~~e~l~~~~e~ 128 (328)
T PRK00080 66 TLANIIANEMGVNIRITSGPALE-----KPGDLAAILTNL---EEGDVLFIDEIHRLSPV---------VEEILYPAMED 128 (328)
T ss_pred HHHHHHHHHhCCCeEEEeccccc-----ChHHHHHHHHhc---ccCCEEEEecHhhcchH---------HHHHHHHHHHh
Confidence 37999999999998887766542 223345555443 23799999999998431 12222222221
Q ss_pred h------cc---------CCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccc
Q psy4165 81 T------GE---------QSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRL 145 (242)
Q Consensus 81 l------~~---------~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~ 145 (242)
. +. .-.++.+|++||++..++++|++||...++|++|+.+++.+|++......+.
T Consensus 129 ~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~---------- 198 (328)
T PRK00080 129 FRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV---------- 198 (328)
T ss_pred cceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC----------
Confidence 1 10 1134789999999999999999999999999999999999999998876322
Q ss_pred ccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 146 KVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 146 ~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
..+ +..++.|++.+.| +++.+..++..+...+.....+.++.+++..++...
T Consensus 199 ~~~----~~~~~~ia~~~~G-~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 199 EID----EEGALEIARRSRG-TPRIANRLLRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred CcC----HHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 222 3345889999986 557888888754444444445688999988888654
No 53
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.36 E-value=4.1e-11 Score=116.47 Aligned_cols=162 Identities=14% Similarity=0.098 Sum_probs=110.9
Q ss_pred hHHHHHHhc----------CCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
+|+.+|..+ +.+++.++.+.+.. .+ |+.+..++++|+.++....++||||||++.+.+.++..+ +.
T Consensus 224 l~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~~ 302 (852)
T TIGR03345 224 VVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-QG 302 (852)
T ss_pred HHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-cc
Confidence 567777654 35688888887763 34 999999999999998654489999999999998765432 11
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCc-----ccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccc
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTP-----QQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKR 143 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~-----~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~ 143 (242)
... +.|+..+ ..+.+.+||||+.. ..+|+||.+||. .|+++.|+.+++..||+.+...+... .
T Consensus 303 d~~---n~Lkp~l--~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~------~ 370 (852)
T TIGR03345 303 DAA---NLLKPAL--ARGELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKH------H 370 (852)
T ss_pred cHH---HHhhHHh--hCCCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhc------C
Confidence 111 2233333 35679999999864 459999999996 89999999999999987776653221 1
Q ss_pred ccccCCCChhHhHHHHHHhCCCCC-----HHHHHHHHHHHHH
Q psy4165 144 RLKVAPFDYTSLCSKIAHVTEGLS-----GREIAKLGVAWQA 180 (242)
Q Consensus 144 ~~~~~~~d~~~~l~~la~~t~g~s-----~adi~~lv~~a~~ 180 (242)
++..+ +..+..++..+.+|- |.---.|+.+|.+
T Consensus 371 ~v~i~----d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a 408 (852)
T TIGR03345 371 GVLIL----DEAVVAAVELSHRYIPGRQLPDKAVSLLDTACA 408 (852)
T ss_pred CCeeC----HHHHHHHHHHcccccccccCccHHHHHHHHHHH
Confidence 11112 344577777777663 3333445554433
No 54
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.34 E-value=1.1e-10 Score=100.98 Aligned_cols=169 Identities=18% Similarity=0.229 Sum_probs=114.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
.||+++|++++.++..+.++.+.. ...+...+.. ...+.||||||+|.+.+. ....+..++..
T Consensus 45 ~la~~ia~~~~~~~~~~~~~~~~~-----~~~l~~~l~~---~~~~~vl~iDEi~~l~~~---------~~e~l~~~~~~ 107 (305)
T TIGR00635 45 TLAHIIANEMGVNLKITSGPALEK-----PGDLAAILTN---LEEGDVLFIDEIHRLSPA---------VEELLYPAMED 107 (305)
T ss_pred HHHHHHHHHhCCCEEEeccchhcC-----chhHHHHHHh---cccCCEEEEehHhhhCHH---------HHHHhhHHHhh
Confidence 379999999999987776554321 1223333332 223789999999998532 11122222211
Q ss_pred h------c---------cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccc
Q psy4165 81 T------G---------EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRL 145 (242)
Q Consensus 81 l------~---------~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~ 145 (242)
. + ....++++|++||++..+++++++||...+++++|+.+++.++++......+ +
T Consensus 108 ~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~----------~ 177 (305)
T TIGR00635 108 FRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN----------V 177 (305)
T ss_pred hheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC----------C
Confidence 1 0 0123478999999999999999999998999999999999999998886522 1
Q ss_pred ccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 146 KVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 146 ~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
. ++ +..++.+++.+.| .++.+.+++..+...+.......++.+.+..++..
T Consensus 178 ~---~~-~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 178 E---IE-PEAALEIARRSRG-TPRIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred C---cC-HHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 1 22 3445789999987 44777778874433333344457899999888876
No 55
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.33 E-value=9.2e-12 Score=121.19 Aligned_cols=127 Identities=15% Similarity=0.186 Sum_probs=98.9
Q ss_pred ChHHHHHHhc----------CCcEEEEecCCcc--ccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccc
Q psy4165 1 MFAKKLAHHS----------GMDYAIMTGGDVA--PMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS 67 (242)
Q Consensus 1 llA~aiA~e~----------~~~~~~v~~~~l~--~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~ 67 (242)
++|+++|..+ |.+++.++.+.+. .++ |+.+..++++|..+.....|+||||||+|.+.+.+.+.+ +
T Consensus 214 ~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~-~ 292 (857)
T PRK10865 214 AIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-A 292 (857)
T ss_pred HHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc-c
Confidence 3678888887 7899999988876 345 999999999999876544489999999999997765433 2
Q ss_pred hHHHHHHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccc
Q psy4165 68 ESLRATLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFV 134 (242)
Q Consensus 68 ~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~ 134 (242)
.....++..+ + ..+.+.+||||+..+ .+|+|+.+||+ .|.++.|+.+++..||+.+..++.
T Consensus 293 ~d~~~~lkp~---l--~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 293 MDAGNMLKPA---L--ARGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred hhHHHHhcch---h--hcCCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 2222233222 2 366899999998876 48999999998 689999999999999998876653
No 56
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.28 E-value=3e-11 Score=117.81 Aligned_cols=127 Identities=16% Similarity=0.198 Sum_probs=97.1
Q ss_pred hHHHHHHhc----------CCcEEEEecCCcc--ccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVA--PMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~--~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
+|+++|..+ +.+++.++.+.+. .++ |+.+..++.+|..+....+|+||||||+|.+++.+...+ ..
T Consensus 210 l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~~ 288 (852)
T TIGR03346 210 IVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-AM 288 (852)
T ss_pred HHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-hh
Confidence 577777764 7889999888875 344 899999999999997654489999999999987554332 11
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhcccc
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVL 135 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~ 135 (242)
. . ..+|..+ ...+.+.+||+|+..+ .+|+++.+||+ .|.++.|+.+++..||+.+..++..
T Consensus 289 d---~-~~~Lk~~-l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~ 354 (852)
T TIGR03346 289 D---A-GNMLKPA-LARGELHCIGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEV 354 (852)
T ss_pred H---H-HHHhchh-hhcCceEEEEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhcc
Confidence 1 2 2233322 2466799999998774 58999999997 6899999999999999998777544
No 57
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.16 E-value=2.7e-09 Score=96.35 Aligned_cols=165 Identities=19% Similarity=0.267 Sum_probs=110.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~l 77 (242)
+||+++|+.++.+|+.+++... +...++.+++.+... .++.||||||+|.+.. ...+.|
T Consensus 51 tLA~~ia~~~~~~~~~l~a~~~------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~------------~~q~~L 112 (413)
T PRK13342 51 TLARIIAGATDAPFEALSAVTS------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK------------AQQDAL 112 (413)
T ss_pred HHHHHHHHHhCCCEEEEecccc------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH------------HHHHHH
Confidence 4799999999999999987643 344566677766432 2379999999999842 223455
Q ss_pred HHHhccCCCCeEEEEec--CCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 78 LYRTGEQSDKFMLVLAS--NTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 78 L~~l~~~~~~v~vI~tT--n~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
+..++ .+.+++|++| |....+++++++|+ ..+.|++|+.++...+++..+..... +. -.++ +..
T Consensus 113 L~~le--~~~iilI~att~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~--------~~--i~i~-~~a 178 (413)
T PRK13342 113 LPHVE--DGTITLIGATTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKER--------GL--VELD-DEA 178 (413)
T ss_pred HHHhh--cCcEEEEEeCCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhc--------CC--CCCC-HHH
Confidence 55554 3557777765 44568999999999 58999999999999999998865210 11 0122 334
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
++.+++.+.| .++.+.+++ +.+... ...++.+++...+....
T Consensus 179 l~~l~~~s~G-d~R~aln~L---e~~~~~--~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 179 LDALARLANG-DARRALNLL---ELAALG--VDSITLELLEEALQKRA 220 (413)
T ss_pred HHHHHHhCCC-CHHHHHHHH---HHHHHc--cCCCCHHHHHHHHhhhh
Confidence 4677777633 444444444 333332 55788888888877643
No 58
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=2e-09 Score=98.38 Aligned_cols=162 Identities=19% Similarity=0.176 Sum_probs=109.9
Q ss_pred ChHHHHHHhcCC------------------------cEEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEec
Q psy4165 1 MFAKKLAHHSGM------------------------DYAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDE 53 (242)
Q Consensus 1 llA~aiA~e~~~------------------------~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDe 53 (242)
++|+++|+.+++ .++.++++. ..+...++++.+.+... ++..||||||
T Consensus 51 TlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~-----~~gid~iR~i~~~~~~~p~~~~~kVvIIDE 125 (472)
T PRK14962 51 TVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS-----NRGIDEIRKIRDAVGYRPMEGKYKVYIIDE 125 (472)
T ss_pred HHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc-----cCCHHHHHHHHHHHhhChhcCCeEEEEEEC
Confidence 479999999876 355555432 12234566666665532 2257999999
Q ss_pred ccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhcc
Q psy4165 54 ADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKF 133 (242)
Q Consensus 54 iD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~ 133 (242)
+|.+. ...++.||..++..++.+++|++|+.+..+++++.+|+. .++|.+|+.++...+++..+...
T Consensus 126 ~h~Lt------------~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~e 192 (472)
T PRK14962 126 VHMLT------------KEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEAE 192 (472)
T ss_pred hHHhH------------HHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHHc
Confidence 99983 234577888888777788888888888999999999996 89999999999999999888652
Q ss_pred ccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 134 VLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 134 ~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
+ +.. + +..++.|++.+. +|++.+++..+...... .+.+|.+++.+++
T Consensus 193 g----------i~i---~-~eal~~Ia~~s~----GdlR~aln~Le~l~~~~-~~~It~e~V~~~l 239 (472)
T PRK14962 193 G----------IEI---D-REALSFIAKRAS----GGLRDALTMLEQVWKFS-EGKITLETVHEAL 239 (472)
T ss_pred C----------CCC---C-HHHHHHHHHHhC----CCHHHHHHHHHHHHHhc-CCCCCHHHHHHHH
Confidence 2 222 2 334577888754 34444444333332222 2348888877665
No 59
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.14 E-value=5.6e-10 Score=108.67 Aligned_cols=161 Identities=14% Similarity=0.126 Sum_probs=111.1
Q ss_pred hHHHHHHhc----------CCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
+|+++|... +.+++.++.+.+.. ++ |+.+..++.+|+.++... |+||||||+|.+++.+...+ ..
T Consensus 216 l~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~-~~ILfiDEih~l~~~g~~~g-~~ 293 (821)
T CHL00095 216 IAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENN-NIILVIDEVHTLIGAGAAEG-AI 293 (821)
T ss_pred HHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcC-CeEEEEecHHHHhcCCCCCC-cc
Confidence 677777765 47899999988763 45 999999999999998766 89999999999998765432 11
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccc
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKR 143 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~ 143 (242)
....++... + ..+.+.+||+|+... ..|+++.+||. .|+++.|+.++...|++.....+... .
T Consensus 294 ~~a~lLkp~---l--~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~------~ 361 (821)
T CHL00095 294 DAANILKPA---L--ARGELQCIGATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKH------H 361 (821)
T ss_pred cHHHHhHHH---H--hCCCcEEEEeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHH------c
Confidence 122222222 2 256789999998764 57999999997 68999999999999998765432110 1
Q ss_pred ccccCCCChhHhHHHHHHhCCCCCH-----HHHHHHHHHHHH
Q psy4165 144 RLKVAPFDYTSLCSKIAHVTEGLSG-----REIAKLGVAWQA 180 (242)
Q Consensus 144 ~~~~~~~d~~~~l~~la~~t~g~s~-----adi~~lv~~a~~ 180 (242)
++. +. +..+..++..+.||.+ .---.++.+|.+
T Consensus 362 ~v~---i~-deal~~i~~ls~~yi~~r~lPdkaidlld~a~a 399 (821)
T CHL00095 362 NLS---IS-DKALEAAAKLSDQYIADRFLPDKAIDLLDEAGS 399 (821)
T ss_pred CCC---CC-HHHHHHHHHHhhccCccccCchHHHHHHHHHHH
Confidence 111 22 3345677777777654 333445554433
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=4.6e-09 Score=95.34 Aligned_cols=135 Identities=20% Similarity=0.181 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++.+.+.. ..+..|+||||+|.+. ....+.||..|++....+++|++|+.++.|.+++++|
T Consensus 104 d~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 104 ENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR 171 (484)
T ss_pred HHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh
Confidence 455665555442 1235799999999993 3467888999988888999999999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
+. .+.|.+++.++-.+.++..+.+.+ +. ++ +..+..|++.++| +.+|.-+++. +..+.+ .
T Consensus 172 Cq-~~~f~~ls~~~i~~~L~~i~~~Eg----------i~---~e-~eAL~~Ia~~S~G-d~RdAL~lLe--q~i~~~--~ 231 (484)
T PRK14956 172 CQ-DFIFKKVPLSVLQDYSEKLCKIEN----------VQ---YD-QEGLFWIAKKGDG-SVRDMLSFME--QAIVFT--D 231 (484)
T ss_pred hh-eeeecCCCHHHHHHHHHHHHHHcC----------CC---CC-HHHHHHHHHHcCC-hHHHHHHHHH--HHHHhC--C
Confidence 96 789999999988888888876522 21 22 3445778877664 4555555554 222222 3
Q ss_pred CCccHHHHHH
Q psy4165 188 GVLTEAMVMS 197 (242)
Q Consensus 188 ~~~~~~~~~~ 197 (242)
+.++.+.+.+
T Consensus 232 ~~it~~~V~~ 241 (484)
T PRK14956 232 SKLTGVKIRK 241 (484)
T ss_pred CCcCHHHHHH
Confidence 3466666544
No 61
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.12 E-value=1.1e-09 Score=89.76 Aligned_cols=141 Identities=18% Similarity=0.292 Sum_probs=93.0
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
+||+.||+++|++|..++++.+.. ...+..++...+ ++.|||||||+.+- +.+...|+..
T Consensus 65 TLA~IIA~e~~~~~~~~sg~~i~k-----~~dl~~il~~l~---~~~ILFIDEIHRln------------k~~qe~Llpa 124 (233)
T PF05496_consen 65 TLARIIANELGVNFKITSGPAIEK-----AGDLAAILTNLK---EGDILFIDEIHRLN------------KAQQEILLPA 124 (233)
T ss_dssp HHHHHHHHHCT--EEEEECCC--S-----CHHHHHHHHT-----TT-EEEECTCCC--------------HHHHHHHHHH
T ss_pred HHHHHHHhccCCCeEeccchhhhh-----HHHHHHHHHhcC---CCcEEEEechhhcc------------HHHHHHHHHH
Confidence 489999999999999999876522 234555554443 36899999999993 2333455555
Q ss_pred hccC---------C---------CCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcc
Q psy4165 81 TGEQ---------S---------DKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGK 142 (242)
Q Consensus 81 l~~~---------~---------~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~ 142 (242)
|++. . .+..+||||++...|.++|+.||.....+...+.++-.+|++.....++..
T Consensus 125 mEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~------ 198 (233)
T PF05496_consen 125 MEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE------ 198 (233)
T ss_dssp HHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E------
T ss_pred hccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC------
Confidence 5311 1 248899999999999999999999888999999999999999887664332
Q ss_pred cccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 143 RRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 143 ~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
++ +....++|+++.| +|+---++++
T Consensus 199 ----i~----~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 199 ----ID----EDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp ----E-----HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred ----cC----HHHHHHHHHhcCC-ChHHHHHHHH
Confidence 22 2334789999985 7777666665
No 62
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=6.6e-09 Score=95.54 Aligned_cols=140 Identities=20% Similarity=0.277 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHh
Q psy4165 29 GVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVN 105 (242)
Q Consensus 29 ~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~ 105 (242)
+...++.+++.+... ++..|++|||+|.+. ...++.||+.+++.+..+++|++|+.++.+++.+.
T Consensus 109 ~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~ 176 (507)
T PRK06645 109 SVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAFNALLKTLEEPPPHIIFIFATTEVQKIPATII 176 (507)
T ss_pred CHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHH
Confidence 456788888877643 124799999999883 23567888888887888888888999999999999
Q ss_pred cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Q psy4165 106 DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYAS 185 (242)
Q Consensus 106 ~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~ 185 (242)
+|+. .++|.+++.++...+++..+.+.+. . ++ +..+..++..++| +.+++-+++. ++..++.
T Consensus 177 SRc~-~~ef~~ls~~el~~~L~~i~~~egi----------~---ie-~eAL~~Ia~~s~G-slR~al~~Ld--kai~~~~ 238 (507)
T PRK06645 177 SRCQ-RYDLRRLSFEEIFKLLEYITKQENL----------K---TD-IEALRIIAYKSEG-SARDAVSILD--QAASMSA 238 (507)
T ss_pred hcce-EEEccCCCHHHHHHHHHHHHHHcCC----------C---CC-HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhhc
Confidence 9995 8999999999999999999976321 1 12 3445789988875 8888888887 4444443
Q ss_pred c-CCCccHHHHHHH
Q psy4165 186 E-DGVLTEAMVMSK 198 (242)
Q Consensus 186 ~-~~~~~~~~~~~a 198 (242)
+ .+.+|.+++.+.
T Consensus 239 ~~~~~It~~~V~~l 252 (507)
T PRK06645 239 KSDNIISPQVINQM 252 (507)
T ss_pred cCCCCcCHHHHHHH
Confidence 2 335666665544
No 63
>PRK04132 replication factor C small subunit; Provisional
Probab=99.10 E-value=2e-09 Score=103.70 Aligned_cols=145 Identities=17% Similarity=0.190 Sum_probs=106.3
Q ss_pred hHHHHHHhc-----CCcEEEEecCCcccccchHHHHHHHHHHHHHhCC-----CcEEEEEecccccccccCCCccchHHH
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSR-----KGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~-----~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
+|+|||+++ +.+++.+++++.. +...++++...+.... +.-|++|||+|.+. .
T Consensus 582 ~A~ala~~l~g~~~~~~~lElNASd~r-----gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt------------~ 644 (846)
T PRK04132 582 AALALARELFGENWRHNFLELNASDER-----GINVIREKVKEFARTKPIGGASFKIIFLDEADALT------------Q 644 (846)
T ss_pred HHHHHHHhhhcccccCeEEEEeCCCcc-----cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC------------H
Confidence 789999997 5689999999852 2345666665543322 13699999999993 2
Q ss_pred HHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 72 ATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 72 ~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
...+.|+..|+.+++.+.+|++||.+..+.++|++|+. .+.|++|+.++-...++....+. ++..+
T Consensus 645 ~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~-~i~F~~ls~~~i~~~L~~I~~~E----------gi~i~--- 710 (846)
T PRK04132 645 DAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENE----------GLELT--- 710 (846)
T ss_pred HHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhce-EEeCCCCCHHHHHHHHHHHHHhc----------CCCCC---
Confidence 34677888888888899999999999999999999985 89999999999998888877642 22211
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~~a~~~~ 182 (242)
+..+..++..+. +|++.+++..+.++
T Consensus 711 -~e~L~~Ia~~s~----GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 711 -EEGLQAILYIAE----GDMRRAINILQAAA 736 (846)
T ss_pred -HHHHHHHHHHcC----CCHHHHHHHHHHHH
Confidence 334567776654 46666665444433
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=8.5e-09 Score=91.61 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++.+.+... ++..|++|||+|.+. ....+.||+.+++.+..+.+|++|+.++.+.+++.+|
T Consensus 102 ~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SR 169 (363)
T PRK14961 102 EEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSR 169 (363)
T ss_pred HHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhh
Confidence 4566666655422 124699999999883 2345678888887777888888888899999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
+. .++|++|+.++..++++..+.+.+. .. + +..+..++..+.| +++++.+++. .+..+ ..
T Consensus 170 c~-~~~~~~l~~~el~~~L~~~~~~~g~----------~i---~-~~al~~ia~~s~G-~~R~al~~l~--~~~~~--~~ 229 (363)
T PRK14961 170 CL-QFKLKIISEEKIFNFLKYILIKESI----------DT---D-EYALKLIAYHAHG-SMRDALNLLE--HAINL--GK 229 (363)
T ss_pred ce-EEeCCCCCHHHHHHHHHHHHHHcCC----------CC---C-HHHHHHHHHHcCC-CHHHHHHHHH--HHHHh--cC
Confidence 94 8999999999999999998876321 11 1 3345778888765 7777777775 22233 35
Q ss_pred CCccHHHHHHHH
Q psy4165 188 GVLTEAMVMSKV 199 (242)
Q Consensus 188 ~~~~~~~~~~a~ 199 (242)
+.++.+++.+.+
T Consensus 230 ~~It~~~v~~~l 241 (363)
T PRK14961 230 GNINIKNVTDML 241 (363)
T ss_pred CCCCHHHHHHHH
Confidence 567777776654
No 65
>PRK04195 replication factor C large subunit; Provisional
Probab=99.09 E-value=5.8e-09 Score=96.04 Aligned_cols=162 Identities=21% Similarity=0.218 Sum_probs=109.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhC-----CCcEEEEEecccccccccCCCccchHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSS-----RKGLVLFIDEADAFLRKRSSETISESLRATLN 75 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~-----~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~ 75 (242)
.+|+++|+++|.+++.+++++..+ ...++.+...+... .++.||+|||+|.+.++.. ...+.
T Consensus 54 tla~ala~el~~~~ielnasd~r~-----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d--------~~~~~ 120 (482)
T PRK04195 54 SLAHALANDYGWEVIELNASDQRT-----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED--------RGGAR 120 (482)
T ss_pred HHHHHHHHHcCCCEEEEccccccc-----HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc--------hhHHH
Confidence 379999999999999999987642 22344444333321 1378999999999865211 12234
Q ss_pred HHHHHhccCCCCeEEEEecCCcccccH-HHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhH
Q psy4165 76 AFLYRTGEQSDKFMLVLASNTPQQFDW-AVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTS 154 (242)
Q Consensus 76 ~lL~~l~~~~~~v~vI~tTn~~~~ld~-al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~ 154 (242)
.|+..+... +..+|+++|.+..+++ .+++|+. .|+|++|+..+...+++..+.+.+ +.+ + +.
T Consensus 121 aL~~~l~~~--~~~iIli~n~~~~~~~k~Lrsr~~-~I~f~~~~~~~i~~~L~~i~~~eg----------i~i---~-~e 183 (482)
T PRK04195 121 AILELIKKA--KQPIILTANDPYDPSLRELRNACL-MIEFKRLSTRSIVPVLKRICRKEG----------IEC---D-DE 183 (482)
T ss_pred HHHHHHHcC--CCCEEEeccCccccchhhHhccce-EEEecCCCHHHHHHHHHHHHHHcC----------CCC---C-HH
Confidence 555555433 3356778899999888 6666664 899999999999999999987632 222 2 34
Q ss_pred hHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 155 LCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 155 ~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
.++.|++.+ ++|++.+++..+. ++...+.++.+++...
T Consensus 184 aL~~Ia~~s----~GDlR~ain~Lq~--~a~~~~~it~~~v~~~ 221 (482)
T PRK04195 184 ALKEIAERS----GGDLRSAINDLQA--IAEGYGKLTLEDVKTL 221 (482)
T ss_pred HHHHHHHHc----CCCHHHHHHHHHH--HhcCCCCCcHHHHHHh
Confidence 457788875 4589998885555 4444556777666433
No 66
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.08 E-value=3.6e-09 Score=95.32 Aligned_cols=176 Identities=13% Similarity=0.121 Sum_probs=114.1
Q ss_pred hHHHHHHhc-----CCcEEEEecCCccccc-chH-HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHH
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPMG-SSG-VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATL 74 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~~-g~~-e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l 74 (242)
|++|+++++ +..++++++.++...+ ... ...+..+....+ .+.+|+|||+|.+.++. .....+
T Consensus 152 L~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~---~~dlLiiDDi~~l~~~~-------~~~~~l 221 (405)
T TIGR00362 152 LLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR---SVDLLLIDDIQFLAGKE-------RTQEEF 221 (405)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH---hCCEEEEehhhhhcCCH-------HHHHHH
Confidence 688898876 6788899887765432 111 112222222222 15799999999986432 122223
Q ss_pred HHHHHHhccCCCCeEEEEecCCccc---ccHHHhcccc--cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC
Q psy4165 75 NAFLYRTGEQSDKFMLVLASNTPQQ---FDWAVNDRLD--EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149 (242)
Q Consensus 75 ~~lL~~l~~~~~~v~vI~tTn~~~~---ld~al~~Rfd--~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~ 149 (242)
-.++..+.. .++.+||.++..|.. +++.+.+||. ..++|++|+.++|..|++..+...+ +.++
T Consensus 222 ~~~~n~~~~-~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~----------~~l~- 289 (405)
T TIGR00362 222 FHTFNALHE-NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEG----------LELP- 289 (405)
T ss_pred HHHHHHHHH-CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC----------CCCC-
Confidence 333333322 234466666666665 5578889996 4799999999999999999987632 2222
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~ 204 (242)
+..++.||+++. -+.++|..+++...+.+.. ....+|.+.+.+++.....
T Consensus 290 ---~e~l~~ia~~~~-~~~r~l~~~l~~l~~~a~~-~~~~it~~~~~~~L~~~~~ 339 (405)
T TIGR00362 290 ---DEVLEFIAKNIR-SNVRELEGALNRLLAYASL-TGKPITLELAKEALKDLLR 339 (405)
T ss_pred ---HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHhcc
Confidence 344588998886 5889999998855444332 3356899888888877643
No 67
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.08 E-value=1.6e-08 Score=89.72 Aligned_cols=179 Identities=16% Similarity=0.122 Sum_probs=108.8
Q ss_pred hHHHHHHhcC---------CcEEEEecCCccccc--------------------c-hHHHHHHHHHHHHHhCCCcEEEEE
Q psy4165 2 FAKKLAHHSG---------MDYAIMTGGDVAPMG--------------------S-SGVTAIHKVFDWASSSRKGLVLFI 51 (242)
Q Consensus 2 lA~aiA~e~~---------~~~~~v~~~~l~~~~--------------------g-~~e~~l~~~f~~A~~~~~p~Il~i 51 (242)
+++++++++. +++++++|....+.. | .....+..++.......+|.||+|
T Consensus 56 l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvI 135 (365)
T TIGR02928 56 VTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVL 135 (365)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 5666766542 578888876543210 1 122345556665554445899999
Q ss_pred ecccccccccCCCccchHHHHHHHHHHHH--hc-cCCCCeEEEEecCCcc---cccHHHhcccc-cEEEeCCCCHHHHHH
Q psy4165 52 DEADAFLRKRSSETISESLRATLNAFLYR--TG-EQSDKFMLVLASNTPQ---QFDWAVNDRLD-EMVEFPLPTLNERER 124 (242)
Q Consensus 52 DeiD~l~~~r~~~~~~~~~~~~l~~lL~~--l~-~~~~~v~vI~tTn~~~---~ld~al~~Rfd-~~i~~~~P~~~~R~~ 124 (242)
||+|.+... . ...+..|+.. .. ....++.+|++||.++ .+++.+.+||. ..++|++++.++..+
T Consensus 136 DE~d~L~~~--~-------~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~ 206 (365)
T TIGR02928 136 DEIDYLVGD--D-------DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRD 206 (365)
T ss_pred CchhhhccC--C-------cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHH
Confidence 999999721 1 1244555544 22 2236789999999886 58888888885 679999999999999
Q ss_pred HHHHHHhccccchhhhcccccccCCCChhHhHHH---HHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 125 LVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSK---IAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 125 Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~---la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
|++..+..- . ....++ +..++. ++..+.|. .+.+-++|..|...+.......++.+++.+|+..
T Consensus 207 il~~r~~~~-~----------~~~~~~-~~~l~~i~~~~~~~~Gd-~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~ 273 (365)
T TIGR02928 207 ILENRAEKA-F----------YDGVLD-DGVIPLCAALAAQEHGD-ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEK 273 (365)
T ss_pred HHHHHHHhh-c----------cCCCCC-hhHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 999988621 0 001122 222233 34443432 3333345543333233344457999999998876
Q ss_pred H
Q psy4165 202 S 202 (242)
Q Consensus 202 ~ 202 (242)
.
T Consensus 274 ~ 274 (365)
T TIGR02928 274 I 274 (365)
T ss_pred H
Confidence 6
No 68
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.07 E-value=1.9e-08 Score=90.17 Aligned_cols=181 Identities=17% Similarity=0.106 Sum_probs=113.1
Q ss_pred hHHHHHHhc-----CCcEEEEecCCcccc------------------cc-hHHHHHHHHHHHHHhCCCcEEEEEeccccc
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPM------------------GS-SGVTAIHKVFDWASSSRKGLVLFIDEADAF 57 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~------------------~g-~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l 57 (242)
+++.+++++ ++.++++++....+. .| .....+..+++......++.||+|||+|.+
T Consensus 71 l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 71 TVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 567777765 678899988654220 01 123344444455444444799999999999
Q ss_pred ccccCCCccchHHHHHHHHHHHHhccC-CCCeEEEEecCCcc---cccHHHhcccc-cEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 58 LRKRSSETISESLRATLNAFLYRTGEQ-SDKFMLVLASNTPQ---QFDWAVNDRLD-EMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 58 ~~~r~~~~~~~~~~~~l~~lL~~l~~~-~~~v~vI~tTn~~~---~ld~al~~Rfd-~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
.... . ...+..|+..++.. ..++.+|+++|.++ .+++.+.+||. ..|+|++++.++..+|++..+..
T Consensus 151 ~~~~-~-------~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~ 222 (394)
T PRK00411 151 FEKE-G-------NDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE 222 (394)
T ss_pred hccC-C-------chHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh
Confidence 7221 1 12455666555432 33788888888763 57788887774 57899999999999999998853
Q ss_pred cccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHH---HHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 133 FVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIA---KLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~---~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
. .....++ +..++.+++.+.+.+ +|++ .+|..|...+.......++.+++.+|+....
T Consensus 223 -~----------~~~~~~~-~~~l~~i~~~~~~~~-Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 223 -G----------FYPGVVD-DEVLDLIADLTAREH-GDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred -h----------cccCCCC-HhHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 1 1011122 334567777775432 3555 4454332223333445799999999988763
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=8.7e-09 Score=96.33 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=112.0
Q ss_pred ChHHHHHHhcCC------------------------cEEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEec
Q psy4165 1 MFAKKLAHHSGM------------------------DYAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDE 53 (242)
Q Consensus 1 llA~aiA~e~~~------------------------~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDe 53 (242)
++|+++|+.++| .++.+++++- .+...++++...+... ++..|++|||
T Consensus 52 TlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~-----~~VddIReli~~~~y~P~~gk~KV~IIDE 126 (702)
T PRK14960 52 TIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR-----TKVEDTRELLDNVPYAPTQGRFKVYLIDE 126 (702)
T ss_pred HHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccccc-----CCHHHHHHHHHHHhhhhhcCCcEEEEEec
Confidence 378999999887 3444444321 1234566666655321 2357999999
Q ss_pred ccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhcc
Q psy4165 54 ADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKF 133 (242)
Q Consensus 54 iD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~ 133 (242)
+|.+-. ...+.||+.|++.++.+.+|++|+.+..+++.+++|+. .++|.+++.++-...++..+.+.
T Consensus 127 Vh~LS~------------~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq-~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 127 VHMLST------------HSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCL-QFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred hHhcCH------------HHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhh-eeeccCCCHHHHHHHHHHHHHHc
Confidence 999832 35678888888777888899999999999999999995 99999999999999999988763
Q ss_pred ccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q psy4165 134 VLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMS 197 (242)
Q Consensus 134 ~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~ 197 (242)
+ +..+ ...+..|++.+.| +.+++-+++. ++.++ ..+.++.+++..
T Consensus 194 g----------I~id----~eAL~~IA~~S~G-dLRdALnLLD--QaIay--g~g~IT~edV~~ 238 (702)
T PRK14960 194 Q----------IAAD----QDAIWQIAESAQG-SLRDALSLTD--QAIAY--GQGAVHHQDVKE 238 (702)
T ss_pred C----------CCCC----HHHHHHHHHHcCC-CHHHHHHHHH--HHHHh--cCCCcCHHHHHH
Confidence 2 2222 3445788888765 7777777765 33333 345666666644
No 70
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=9.8e-09 Score=97.08 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.+... .+..|+||||+|.|. ....+.||+.|++....+.+|++||.+..|.+.|++
T Consensus 101 VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS 168 (830)
T PRK07003 101 VDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS 168 (830)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh
Confidence 34567777665422 125799999999993 234688899998888889999999999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
|+. .+.|..++.++..+.|+..+.+. ++..+ +..+..|++.++| +.+|.-+++.
T Consensus 169 RCq-~f~Fk~Ls~eeIv~~L~~Il~~E----------gI~id----~eAL~lIA~~A~G-smRdALsLLd 222 (830)
T PRK07003 169 RCL-QFNLKQMPAGHIVSHLERILGEE----------RIAFE----PQALRLLARAAQG-SMRDALSLTD 222 (830)
T ss_pred heE-EEecCCcCHHHHHHHHHHHHHHc----------CCCCC----HHHHHHHHHHcCC-CHHHHHHHHH
Confidence 995 99999999999999999988752 22222 3445778888875 4566666655
No 71
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.06 E-value=5.5e-09 Score=95.39 Aligned_cols=176 Identities=13% Similarity=0.106 Sum_probs=114.5
Q ss_pred hHHHHHHhc-----CCcEEEEecCCccccc-chHH-HHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHH
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPMG-SSGV-TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATL 74 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~~-g~~e-~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l 74 (242)
|++|+|+++ +..++++++.++.+.+ +... .....+.+..+ . +.+|+|||+|.+.+++. ....+
T Consensus 164 L~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~dlLiiDDi~~l~~~~~-------~~~~l 233 (450)
T PRK00149 164 LLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--S-VDVLLIDDIQFLAGKER-------TQEEF 233 (450)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--c-CCEEEEehhhhhcCCHH-------HHHHH
Confidence 788999886 6678889888775432 1111 11222222222 2 68999999999864321 22223
Q ss_pred HHHHHHhccCCCCeEEEEecCCccc---ccHHHhcccc--cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC
Q psy4165 75 NAFLYRTGEQSDKFMLVLASNTPQQ---FDWAVNDRLD--EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149 (242)
Q Consensus 75 ~~lL~~l~~~~~~v~vI~tTn~~~~---ld~al~~Rfd--~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~ 149 (242)
-.++..+-. .++.++|+++..|.. +++.+.+||. ..+++++|+.++|..|++..+...+ +.++
T Consensus 234 ~~~~n~l~~-~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~----------~~l~- 301 (450)
T PRK00149 234 FHTFNALHE-AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG----------IDLP- 301 (450)
T ss_pred HHHHHHHHH-CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC----------CCCC-
Confidence 333333322 234466666666655 6789999996 5899999999999999999987522 1122
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~ 204 (242)
+..++.||..+. =+.++|..+++...+.+.. ....+|.+.+.+++.....
T Consensus 302 ---~e~l~~ia~~~~-~~~R~l~~~l~~l~~~~~~-~~~~it~~~~~~~l~~~~~ 351 (450)
T PRK00149 302 ---DEVLEFIAKNIT-SNVRELEGALNRLIAYASL-TGKPITLELAKEALKDLLA 351 (450)
T ss_pred ---HHHHHHHHcCcC-CCHHHHHHHHHHHHHHHHh-hCCCCCHHHHHHHHHHhhc
Confidence 344588999886 4788888888855443332 2346899999999887653
No 72
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=7.4e-09 Score=96.64 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.+.. ..+..|+||||+|.+. ....|.||+.|++..+++++|++||.++.|.+.|++
T Consensus 106 VDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrS 173 (700)
T PRK12323 106 VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS 173 (700)
T ss_pred HHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHH
Confidence 3456666655442 2225799999999993 245688999999888899999999999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
|+. .+.|+.++.++..+.|+..+.+.+ +.. + +..++.|++.++ -++++..+++.
T Consensus 174 RCq-~f~f~~ls~eei~~~L~~Il~~Eg----------i~~---d-~eAL~~IA~~A~-Gs~RdALsLLd 227 (700)
T PRK12323 174 RCL-QFNLKQMPPGHIVSHLDAILGEEG----------IAH---E-VNALRLLAQAAQ-GSMRDALSLTD 227 (700)
T ss_pred HHH-hcccCCCChHHHHHHHHHHHHHcC----------CCC---C-HHHHHHHHHHcC-CCHHHHHHHHH
Confidence 994 899999999999999998886521 111 1 233467787776 47777777775
No 73
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.03 E-value=1.8e-08 Score=88.96 Aligned_cols=137 Identities=23% Similarity=0.295 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++++.+... ++.-||+|||+|.+.. ...+.||..+++.+..+++|++|+.++.+.+++++
T Consensus 99 ~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~------------~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~s 166 (355)
T TIGR02397 99 VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK------------SAFNALLKTLEEPPEHVVFILATTEPHKIPATILS 166 (355)
T ss_pred HHHHHHHHHHHhcCcccCCceEEEEeChhhcCH------------HHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHh
Confidence 34577888877643 1246999999998831 24577888887777788888889999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE 186 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~ 186 (242)
|+. .++|++|+.++..++++.++++.+. .. + +..+..++..+.| +++.+.+.+. +...+.
T Consensus 167 r~~-~~~~~~~~~~~l~~~l~~~~~~~g~----------~i---~-~~a~~~l~~~~~g-~~~~a~~~le--kl~~~~-- 226 (355)
T TIGR02397 167 RCQ-RFDFKRIPLEDIVERLKKILDKEGI----------KI---E-DEALELIARAADG-SLRDALSLLD--QLISFG-- 226 (355)
T ss_pred hee-EEEcCCCCHHHHHHHHHHHHHHcCC----------CC---C-HHHHHHHHHHcCC-ChHHHHHHHH--HHHhhc--
Confidence 995 8999999999999999999876322 12 2 3344677877764 6666666664 333332
Q ss_pred CCCccHHHHHHH
Q psy4165 187 DGVLTEAMVMSK 198 (242)
Q Consensus 187 ~~~~~~~~~~~a 198 (242)
.+.++.+++.+.
T Consensus 227 ~~~it~~~v~~~ 238 (355)
T TIGR02397 227 NGNITYEDVNEL 238 (355)
T ss_pred CCCCCHHHHHHH
Confidence 234676666544
No 74
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=1.2e-08 Score=94.23 Aligned_cols=160 Identities=17% Similarity=0.156 Sum_probs=111.3
Q ss_pred hHHHHHHhcCCc------------------------EEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEecc
Q psy4165 2 FAKKLAHHSGMD------------------------YAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDEA 54 (242)
Q Consensus 2 lA~aiA~e~~~~------------------------~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDei 54 (242)
+|+++|+.++|. ++.+++++ ..+...++++.+.+... ++..|++|||+
T Consensus 54 ~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas-----~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~ 128 (509)
T PRK14958 54 ISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS-----RTKVEDTRELLDNIPYAPTKGRFKVYLIDEV 128 (509)
T ss_pred HHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc-----cCCHHHHHHHHHHHhhccccCCcEEEEEECh
Confidence 789999988873 45554432 12234466666555421 12469999999
Q ss_pred cccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccc
Q psy4165 55 DAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFV 134 (242)
Q Consensus 55 D~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~ 134 (242)
|.+. ....+.||+.|++.+..+.+|++|+.+..+.+.+++|+. .++|.+++.++-...++..+.+.+
T Consensus 129 ~~ls------------~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~-~~~f~~l~~~~i~~~l~~il~~eg 195 (509)
T PRK14958 129 HMLS------------GHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCL-QFHLAQLPPLQIAAHCQHLLKEEN 195 (509)
T ss_pred HhcC------------HHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhh-hhhcCCCCHHHHHHHHHHHHHHcC
Confidence 9994 234688999998888888899999999999999999984 889999999998888888887632
Q ss_pred cchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 135 LQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 135 ~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
+..+ +..+..+++.+.| +.+++.+++. ++.++ ..+.++.+++...
T Consensus 196 ----------i~~~----~~al~~ia~~s~G-slR~al~lLd--q~ia~--~~~~It~~~V~~~ 240 (509)
T PRK14958 196 ----------VEFE----NAALDLLARAANG-SVRDALSLLD--QSIAY--GNGKVLIADVKTM 240 (509)
T ss_pred ----------CCCC----HHHHHHHHHHcCC-cHHHHHHHHH--HHHhc--CCCCcCHHHHHHH
Confidence 2222 3345778888764 7788888876 33344 2455666655543
No 75
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.01 E-value=9e-09 Score=95.67 Aligned_cols=98 Identities=12% Similarity=0.075 Sum_probs=73.7
Q ss_pred eEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCC
Q psy4165 88 FMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLS 167 (242)
Q Consensus 88 v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s 167 (242)
.++++|||.|+.|+|++++|+. .|.|++++.+++.+|++..+++.+. ..+ +..++.++..+ ++
T Consensus 235 rlI~ATt~~p~~L~paLrsR~~-~I~f~pL~~eei~~Il~~~a~k~~i----------~is----~~al~~I~~y~--~n 297 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRSRCV-EIFFRPLLDEEIKEIAKNAAEKIGI----------NLE----KHALELIVKYA--SN 297 (531)
T ss_pred EEEEEecCCcccCChHHhhhhh-eeeCCCCCHHHHHHHHHHHHHHcCC----------CcC----HHHHHHHHHhh--hh
Confidence 4555677899999999999996 8899999999999999999987432 122 23346677665 48
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 168 GREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 168 ~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
++++.++++.|...+....+..++.++++..++..
T Consensus 298 ~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 298 GREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 99999999855444444445589999999998644
No 76
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.00 E-value=2.2e-08 Score=95.71 Aligned_cols=151 Identities=16% Similarity=0.178 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHh-CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCC---cccccHHH
Q psy4165 29 GVTAIHKVFDWASS-SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNT---PQQFDWAV 104 (242)
Q Consensus 29 ~e~~l~~~f~~A~~-~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~---~~~ld~al 104 (242)
+...+..+|..... ....+||+|||||.|... ...++-.|+.+......+++|||++|. +..|+|.+
T Consensus 852 S~evLerLF~~L~k~~r~v~IIILDEID~L~kK---------~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRL 922 (1164)
T PTZ00112 852 SFKILDRLFNQNKKDNRNVSILIIDEIDYLITK---------TQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRC 922 (1164)
T ss_pred HHHHHHHHHhhhhcccccceEEEeehHhhhCcc---------HHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhh
Confidence 34567777776532 222579999999999753 123444555444445667999999986 56778888
Q ss_pred hccccc-EEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q psy4165 105 NDRLDE-MVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAY 183 (242)
Q Consensus 105 ~~Rfd~-~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~ 183 (242)
.+||.. .|.|++++.+++.+||+.-+.... ..++ +..++.+|+... ...+|++.++.-.+.++.
T Consensus 923 RSRLg~eeIvF~PYTaEQL~dILk~RAe~A~-------------gVLd-DdAIELIArkVA-q~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 923 RSRLAFGRLVFSPYKGDEIEKIIKERLENCK-------------EIID-HTAIQLCARKVA-NVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hhccccccccCCCCCHHHHHHHHHHHHHhCC-------------CCCC-HHHHHHHHHhhh-hcCCHHHHHHHHHHHHHh
Confidence 888764 488999999999999999887420 1133 444566777554 445799998876666655
Q ss_pred hhcCCCccHHHHHHHHHHHH
Q psy4165 184 ASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 184 ~~~~~~~~~~~~~~a~~~~~ 203 (242)
..+...++.+++.+|+....
T Consensus 988 ikegskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 988 NKRGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred hcCCCccCHHHHHHHHHHHH
Confidence 55556899999999986653
No 77
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=4.1e-08 Score=91.73 Aligned_cols=137 Identities=22% Similarity=0.287 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHH
Q psy4165 28 SGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAV 104 (242)
Q Consensus 28 ~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al 104 (242)
.+...++++.+.+... ++.-|++|||+|.+. ...++.||+.+++.+..+++|++|+.++.|++.+
T Consensus 99 ~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 99 NGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH
Confidence 3455677777776632 235799999999883 2356788988988888888888888999999999
Q ss_pred hcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q psy4165 105 NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYA 184 (242)
Q Consensus 105 ~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~ 184 (242)
++|+. .++|++|+.++-...++..+.+.+ +..+ +..+..++..+.| +.++..+++. +...+.
T Consensus 167 ~SRc~-~~~f~~~~~~ei~~~L~~i~~~eg----------i~i~----~~al~~ia~~s~G-~~R~al~~Ld--q~~~~~ 228 (559)
T PRK05563 167 LSRCQ-RFDFKRISVEDIVERLKYILDKEG----------IEYE----DEALRLIARAAEG-GMRDALSILD--QAISFG 228 (559)
T ss_pred HhHhe-EEecCCCCHHHHHHHHHHHHHHcC----------CCCC----HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhc
Confidence 99996 789999999999999999887632 2222 3345778888775 7777777776 333332
Q ss_pred hcCCCccHHHHH
Q psy4165 185 SEDGVLTEAMVM 196 (242)
Q Consensus 185 ~~~~~~~~~~~~ 196 (242)
.+.++.+++.
T Consensus 229 --~~~It~~~V~ 238 (559)
T PRK05563 229 --DGKVTYEDAL 238 (559)
T ss_pred --cCCCCHHHHH
Confidence 3456655443
No 78
>PRK06893 DNA replication initiation factor; Validated
Probab=98.99 E-value=3.2e-08 Score=82.42 Aligned_cols=165 Identities=11% Similarity=0.104 Sum_probs=101.5
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
|++|+|+++ +....+++.... .....++++..+ +..+|+|||++.+.+.+ .....+..++
T Consensus 55 L~~ai~~~~~~~~~~~~y~~~~~~-------~~~~~~~~~~~~---~~dlLilDDi~~~~~~~-------~~~~~l~~l~ 117 (229)
T PRK06893 55 LLKAVSNHYLLNQRTAIYIPLSKS-------QYFSPAVLENLE---QQDLVCLDDLQAVIGNE-------EWELAIFDLF 117 (229)
T ss_pred HHHHHHHHHHHcCCCeEEeeHHHh-------hhhhHHHHhhcc---cCCEEEEeChhhhcCCh-------HHHHHHHHHH
Confidence 678888875 233344443221 111122333332 26799999999986432 1223345555
Q ss_pred HHhccCCCCeEEEEecCCccccc---HHHhccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 79 YRTGEQSDKFMLVLASNTPQQFD---WAVNDRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 79 ~~l~~~~~~v~vI~tTn~~~~ld---~al~~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
+.+...+..++++.++..|..++ +.+.+|+ ...+++++|+.++|.+|++...... ++.++ +
T Consensus 118 n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~----------~l~l~----~ 183 (229)
T PRK06893 118 NRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR----------GIELS----D 183 (229)
T ss_pred HHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc----------CCCCC----H
Confidence 55533334455666777788776 7888765 5799999999999999999888642 22222 3
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
..++.|+++.+ =+.+.+..++.....+.. .....+|.+.+++.+
T Consensus 184 ~v~~~L~~~~~-~d~r~l~~~l~~l~~~~~-~~~~~it~~~v~~~L 227 (229)
T PRK06893 184 EVANFLLKRLD-RDMHTLFDALDLLDKASL-QAQRKLTIPFVKEIL 227 (229)
T ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHh
Confidence 34478998876 467777777765433333 223468888877665
No 79
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.98 E-value=3.8e-08 Score=92.68 Aligned_cols=117 Identities=17% Similarity=0.216 Sum_probs=87.6
Q ss_pred HHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhccc
Q psy4165 32 AIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRL 108 (242)
Q Consensus 32 ~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rf 108 (242)
.++++.+.+.. .++.-|+||||+|.+. ....+.||+.|++.++.+.+|++|+.+..|.+.|++|+
T Consensus 103 diR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC 170 (647)
T PRK07994 103 DTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 (647)
T ss_pred HHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhh
Confidence 45555554432 2225799999999983 34678999999988888999999999999999999998
Q ss_pred ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 109 DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 109 d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
..++|++++.++-...|+..+.+.+ +..+ ...+..|+..+.| +.++.-+++.
T Consensus 171 -~~~~f~~Ls~~ei~~~L~~il~~e~----------i~~e----~~aL~~Ia~~s~G-s~R~Al~lld 222 (647)
T PRK07994 171 -LQFHLKALDVEQIRQQLEHILQAEQ----------IPFE----PRALQLLARAADG-SMRDALSLTD 222 (647)
T ss_pred -eEeeCCCCCHHHHHHHHHHHHHHcC----------CCCC----HHHHHHHHHHcCC-CHHHHHHHHH
Confidence 5999999999999999998886522 1111 3345678877664 6667777765
No 80
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=3.7e-08 Score=92.47 Aligned_cols=137 Identities=22% Similarity=0.224 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.+... .+--|++|||+|.+. ....+.||+.+++.++.+.+|++|+.+..+.+.+++
T Consensus 106 Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlS 173 (618)
T PRK14951 106 VDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLS 173 (618)
T ss_pred HHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHH
Confidence 34567777665522 113599999999983 234678999998888888888888899999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE 186 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~ 186 (242)
|+ ..++|..++.++..+.++..+.+.+. ..+ ...+..|++.+.| +.+++.+++. ++.++.
T Consensus 174 Rc-~~~~f~~Ls~eei~~~L~~i~~~egi----------~ie----~~AL~~La~~s~G-slR~al~lLd--q~ia~~-- 233 (618)
T PRK14951 174 RC-LQFNLRPMAPETVLEHLTQVLAAENV----------PAE----PQALRLLARAARG-SMRDALSLTD--QAIAFG-- 233 (618)
T ss_pred hc-eeeecCCCCHHHHHHHHHHHHHHcCC----------CCC----HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhc--
Confidence 98 49999999999999999988875322 221 3345788888775 7777777775 333332
Q ss_pred CCCccHHHHHHH
Q psy4165 187 DGVLTEAMVMSK 198 (242)
Q Consensus 187 ~~~~~~~~~~~a 198 (242)
.+.++.+++.+.
T Consensus 234 ~~~It~~~V~~~ 245 (618)
T PRK14951 234 SGQLQEAAVRQM 245 (618)
T ss_pred CCCcCHHHHHHH
Confidence 445666555443
No 81
>KOG2028|consensus
Probab=98.97 E-value=1.4e-08 Score=88.04 Aligned_cols=175 Identities=17% Similarity=0.251 Sum_probs=118.9
Q ss_pred ChHHHHHHhcCCc---EEEEecCCcccccchHHHHHHHHHHHHHhCC----CcEEEEEecccccccccCCCccchHHHHH
Q psy4165 1 MFAKKLAHHSGMD---YAIMTGGDVAPMGSSGVTAIHKVFDWASSSR----KGLVLFIDEADAFLRKRSSETISESLRAT 73 (242)
Q Consensus 1 llA~aiA~e~~~~---~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~----~p~Il~iDeiD~l~~~r~~~~~~~~~~~~ 73 (242)
.|||.|++...-+ |+.++... ...+.++.+|+.++... +..|||||||+.|.. ..
T Consensus 177 tlArlia~tsk~~SyrfvelSAt~------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk------------sQ 238 (554)
T KOG2028|consen 177 TLARLIASTSKKHSYRFVELSATN------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK------------SQ 238 (554)
T ss_pred HHHHHHHhhcCCCceEEEEEeccc------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh------------hh
Confidence 3789999887776 77777655 34578999999998632 479999999999943 22
Q ss_pred HHHHHHHhccCCCCeEEEEec--CCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC--
Q psy4165 74 LNAFLYRTGEQSDKFMLVLAS--NTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP-- 149 (242)
Q Consensus 74 l~~lL~~l~~~~~~v~vI~tT--n~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~-- 149 (242)
...||-.++ .+.|++||+| |....|..+|++|+- ++.+...+.+.-..||.+-+..++..- ..--.++...
T Consensus 239 QD~fLP~VE--~G~I~lIGATTENPSFqln~aLlSRC~-VfvLekL~~n~v~~iL~raia~l~dse--r~~~~l~n~s~~ 313 (554)
T KOG2028|consen 239 QDTFLPHVE--NGDITLIGATTENPSFQLNAALLSRCR-VFVLEKLPVNAVVTILMRAIASLGDSE--RPTDPLPNSSMF 313 (554)
T ss_pred hhcccceec--cCceEEEecccCCCccchhHHHHhccc-eeEeccCCHHHHHHHHHHHHHhhcccc--ccCCCCCCcchh
Confidence 345665553 6679999977 888899999999985 777888888999999988665332111 0001222222
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHHHHHHHH--HhhhcCC-----CccHHHHHHHHHHHH
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLGVAWQAS--AYASEDG-----VLTEAMVMSKVEDSI 203 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~--~~~~~~~-----~~~~~~~~~a~~~~~ 203 (242)
++ +..++.++..++| |-+..++..+.. ..+.+.+ .++.+|+.+.+++.-
T Consensus 314 ve-~siidyla~lsdG----DaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 314 VE-DSIIDYLAYLSDG----DARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred hh-HHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhcc
Confidence 22 4456788888775 444444433333 3333333 899999999887654
No 82
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.96 E-value=1.1e-08 Score=98.83 Aligned_cols=159 Identities=16% Similarity=0.156 Sum_probs=103.1
Q ss_pred hHHHHHHhcCCcEEEEecCCccc----------ccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAP----------MGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~----------~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
+++.+|+.++.+++.++.+.... +.|.....+.+.+..+...+ .||||||+|.+...... + .
T Consensus 365 l~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~--~villDEidk~~~~~~g-~----~- 436 (784)
T PRK10787 365 LGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKN--PLFLLDEIDKMSSDMRG-D----P- 436 (784)
T ss_pred HHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCC--CEEEEEChhhcccccCC-C----H-
Confidence 78999999999999988665432 22555556666676666554 48999999999754221 1 1
Q ss_pred HHHHHHHHHhcc---------------CCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccc
Q psy4165 72 ATLNAFLYRTGE---------------QSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQ 136 (242)
Q Consensus 72 ~~l~~lL~~l~~---------------~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~ 136 (242)
...||.-++. .-+++++|+|||.. .|+++|++||. .|+|+.++.++..+|.+.|+-.....
T Consensus 437 --~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~ 512 (784)
T PRK10787 437 --ASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRME-VIRLSGYTEDEKLNIAKRHLLPKQIE 512 (784)
T ss_pred --HHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhccee-eeecCCCCHHHHHHHHHHhhhHHHHH
Confidence 2334433331 22679999999987 59999999996 89999999999999999999421000
Q ss_pred hhhhcccccccCCCCh-hHhHHHHHHh-CCCCCHHHHHHHHHH
Q psy4165 137 PAAQGKRRLKVAPFDY-TSLCSKIAHV-TEGLSGREIAKLGVA 177 (242)
Q Consensus 137 ~~~~~~~~~~~~~~d~-~~~l~~la~~-t~g~s~adi~~lv~~ 177 (242)
..+.....+.+ +..+..+++. +..+-.+.|+.++..
T Consensus 513 -----~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~ 550 (784)
T PRK10787 513 -----RNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISK 550 (784)
T ss_pred -----HhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHH
Confidence 00111112222 2233455543 344666777777653
No 83
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.96 E-value=3.8e-08 Score=91.76 Aligned_cols=176 Identities=15% Similarity=0.127 Sum_probs=112.1
Q ss_pred hHHHHHHhc-----CCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHH
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLN 75 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~ 75 (242)
|++|||+++ |..++++++.++...+ ..........|..-- ..+.+|+||||+.+.++.. ....+-
T Consensus 330 LL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y--~~~DLLlIDDIq~l~gke~-------tqeeLF 400 (617)
T PRK14086 330 LLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY--REMDILLVDDIQFLEDKES-------TQEEFF 400 (617)
T ss_pred HHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh--hcCCEEEEehhccccCCHH-------HHHHHH
Confidence 788999876 5688999988876543 221111122233222 2268999999999965321 222333
Q ss_pred HHHHHhccCCCCeEEEEecCCc----ccccHHHhccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC
Q psy4165 76 AFLYRTGEQSDKFMLVLASNTP----QQFDWAVNDRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149 (242)
Q Consensus 76 ~lL~~l~~~~~~v~vI~tTn~~----~~ld~al~~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~ 149 (242)
.+++.+.+.+ +-+|| |+|.+ ..+++.|.+|| ...+++..|+.+.|..||+..+...+ +.++
T Consensus 401 ~l~N~l~e~g-k~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~----------l~l~- 467 (617)
T PRK14086 401 HTFNTLHNAN-KQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ----------LNAP- 467 (617)
T ss_pred HHHHHHHhcC-CCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcC----------CCCC-
Confidence 4444443222 33444 55543 35788899998 56679999999999999999987632 2222
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~ 204 (242)
...++.|+.+.. =+.++|..+++...+.+.. ....+|.+..+..+.....
T Consensus 468 ---~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~~-~~~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 468 ---PEVLEFIASRIS-RNIRELEGALIRVTAFASL-NRQPVDLGLTEIVLRDLIP 517 (617)
T ss_pred ---HHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHh-hCCCCCHHHHHHHHHHhhc
Confidence 334588999986 4788898888754333322 3346888888877766543
No 84
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.95 E-value=6e-08 Score=84.39 Aligned_cols=117 Identities=17% Similarity=0.220 Sum_probs=81.6
Q ss_pred hHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHh
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT 81 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l 81 (242)
+|+++|++.+.+++.+++++ .. .......+............+.||+|||+|.+.. ...... |...+
T Consensus 59 la~~l~~~~~~~~~~i~~~~-~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~~---L~~~l 125 (316)
T PHA02544 59 VAKALCNEVGAEVLFVNGSD-CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL--------ADAQRH---LRSFM 125 (316)
T ss_pred HHHHHHHHhCccceEeccCc-cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC--------HHHHHH---HHHHH
Confidence 78999999999999999887 22 2111122322222111112379999999998731 112222 33335
Q ss_pred ccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 82 GEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 82 ~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
+....++.+|++||.+..+++++++||. .+.|+.|+.+++..+++.++..
T Consensus 126 e~~~~~~~~Ilt~n~~~~l~~~l~sR~~-~i~~~~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 126 EAYSKNCSFIITANNKNGIIEPLRSRCR-VIDFGVPTKEEQIEMMKQMIVR 175 (316)
T ss_pred HhcCCCceEEEEcCChhhchHHHHhhce-EEEeCCCCHHHHHHHHHHHHHH
Confidence 5556677899999999999999999996 8899999999999998877654
No 85
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=1.5e-08 Score=94.68 Aligned_cols=134 Identities=19% Similarity=0.206 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccE
Q psy4165 32 AIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEM 111 (242)
Q Consensus 32 ~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~ 111 (242)
.+.+.+...-...+..||||||+|.+. ....+.||..|++....+++|++||.+..+.+.|++|+. .
T Consensus 106 ~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq-~ 172 (624)
T PRK14959 106 RLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQ-H 172 (624)
T ss_pred HHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhh-c
Confidence 344444433322335899999999983 234688898898777788999999999999999999986 7
Q ss_pred EEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCcc
Q psy4165 112 VEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLT 191 (242)
Q Consensus 112 i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~ 191 (242)
|+|++++.++-..+|+..+.+.+.. ++ ...++.+++.+. +|++.+++.....+ ....+.++
T Consensus 173 i~F~pLs~~eL~~~L~~il~~egi~-------------id-~eal~lIA~~s~----GdlR~Al~lLeqll-~~g~~~It 233 (624)
T PRK14959 173 FTFTRLSEAGLEAHLTKVLGREGVD-------------YD-PAAVRLIARRAA----GSVRDSMSLLGQVL-ALGESRLT 233 (624)
T ss_pred cccCCCCHHHHHHHHHHHHHHcCCC-------------CC-HHHHHHHHHHcC----CCHHHHHHHHHHHH-HhcCCCcC
Confidence 8999999999999999887653211 22 333466776654 44444444333222 23444667
Q ss_pred HHHHHH
Q psy4165 192 EAMVMS 197 (242)
Q Consensus 192 ~~~~~~ 197 (242)
.+++..
T Consensus 234 ~d~V~~ 239 (624)
T PRK14959 234 IDGARG 239 (624)
T ss_pred HHHHHH
Confidence 666543
No 86
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.95 E-value=4.2e-08 Score=82.55 Aligned_cols=174 Identities=19% Similarity=0.243 Sum_probs=124.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
+||..||+|+|+.+-..+++.+ +....+-.++...+. .-|+|||||+.+.+.- .+-....+..|--.
T Consensus 67 TLA~IIA~Emgvn~k~tsGp~l-----eK~gDlaaiLt~Le~---~DVLFIDEIHrl~~~v-----EE~LYpaMEDf~lD 133 (332)
T COG2255 67 TLAHIIANELGVNLKITSGPAL-----EKPGDLAAILTNLEE---GDVLFIDEIHRLSPAV-----EEVLYPAMEDFRLD 133 (332)
T ss_pred HHHHHHHHHhcCCeEecccccc-----cChhhHHHHHhcCCc---CCeEEEehhhhcChhH-----HHHhhhhhhheeEE
Confidence 4899999999999999999887 445567777766553 5899999999995421 01111122222111
Q ss_pred h--cc-C--------CCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC
Q psy4165 81 T--GE-Q--------SDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149 (242)
Q Consensus 81 l--~~-~--------~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~ 149 (242)
+ ++ . -.+..+||+|.+...|...|+.||.....+...+.++-.+|+...-..++.. +++
T Consensus 134 I~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~----------i~~ 203 (332)
T COG2255 134 IIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE----------IDE 203 (332)
T ss_pred EEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC----------CCh
Confidence 1 11 1 1358899999999999999999999999999999999999999998765333 222
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
....++|+++.| ||+=--+|+++..--+.-.+.+.++.+...+++...
T Consensus 204 ----~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 204 ----EAALEIARRSRG-TPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred ----HHHHHHHHhccC-CcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHh
Confidence 334789999986 677666777755544555566788887777776544
No 87
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.91 E-value=5e-08 Score=91.92 Aligned_cols=138 Identities=21% Similarity=0.201 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHh
Q psy4165 29 GVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVN 105 (242)
Q Consensus 29 ~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~ 105 (242)
+...+++++..+... .+..||||||+|.+. ...++.||+.|++..+.+.+|++|+.+..+.+.++
T Consensus 100 gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 100 GIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred CHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 345677777765422 225799999999872 23567899999877788889999999999999999
Q ss_pred cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Q psy4165 106 DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYAS 185 (242)
Q Consensus 106 ~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~ 185 (242)
+|+. .+.|+.++.++-...|+..+.+.+ +.. + ...+..|++.+. -+.+++.+++. ++..+.
T Consensus 168 SRC~-~f~f~~Ls~eeI~~~L~~Il~kEg----------i~i---d-~eAL~~Ia~~A~-GslRdAlnLLD--qaia~g- 228 (709)
T PRK08691 168 SRCL-QFVLRNMTAQQVADHLAHVLDSEK----------IAY---E-PPALQLLGRAAA-GSMRDALSLLD--QAIALG- 228 (709)
T ss_pred HHHh-hhhcCCCCHHHHHHHHHHHHHHcC----------CCc---C-HHHHHHHHHHhC-CCHHHHHHHHH--HHHHhc-
Confidence 9994 889999999999999999887632 222 2 334578888875 57778877776 333332
Q ss_pred cCCCccHHHHHHH
Q psy4165 186 EDGVLTEAMVMSK 198 (242)
Q Consensus 186 ~~~~~~~~~~~~a 198 (242)
.+.|+.+++...
T Consensus 229 -~g~It~e~V~~l 240 (709)
T PRK08691 229 -SGKVAENDVRQM 240 (709)
T ss_pred -CCCcCHHHHHHH
Confidence 445666655544
No 88
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.90 E-value=5.7e-08 Score=94.06 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=79.7
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERL 125 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~I 125 (242)
..|+||||+|.|. ....+.||+.|++....+++|++|+.++.|.+.|++|+. .++|..++.++..++
T Consensus 121 ~KV~IIDEad~lt------------~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~-~v~F~~l~~~~l~~~ 187 (824)
T PRK07764 121 YKIFIIDEAHMVT------------PQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTH-HYPFRLVPPEVMRGY 187 (824)
T ss_pred ceEEEEechhhcC------------HHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhee-EEEeeCCCHHHHHHH
Confidence 5799999999993 245688999999888889999999999999999999985 899999999999999
Q ss_pred HHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 126 VRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 126 l~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
|+..+.+.++ .. + ...+..|++.+.| +.+++.+++.
T Consensus 188 L~~il~~EGv----------~i---d-~eal~lLa~~sgG-dlR~Al~eLE 223 (824)
T PRK07764 188 LERICAQEGV----------PV---E-PGVLPLVIRAGGG-SVRDSLSVLD 223 (824)
T ss_pred HHHHHHHcCC----------CC---C-HHHHHHHHHHcCC-CHHHHHHHHH
Confidence 9988875322 11 1 2234566767654 6666666665
No 89
>PLN03025 replication factor C subunit; Provisional
Probab=98.89 E-value=4.3e-08 Score=85.61 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=101.8
Q ss_pred hHHHHHHhcCC-----cEEEEecCCcccccchHHHHHHHH---HHHHHh---CCCcEEEEEecccccccccCCCccchHH
Q psy4165 2 FAKKLAHHSGM-----DYAIMTGGDVAPMGSSGVTAIHKV---FDWASS---SRKGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 2 lA~aiA~e~~~-----~~~~v~~~~l~~~~g~~e~~l~~~---f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
+|+++|+++.+ .++.+++++..+ ...++.. |..... ..++.||+|||+|.+..
T Consensus 50 la~~la~~l~~~~~~~~~~eln~sd~~~-----~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~----------- 113 (319)
T PLN03025 50 SILALAHELLGPNYKEAVLELNASDDRG-----IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS----------- 113 (319)
T ss_pred HHHHHHHHHhcccCccceeeeccccccc-----HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-----------
Confidence 78999998733 366666665422 1123332 222211 11268999999999842
Q ss_pred HHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCC
Q psy4165 71 RATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPF 150 (242)
Q Consensus 71 ~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~ 150 (242)
...+.|+..|+.++....+|.+||.+..+.++|++|+. .++|++|+.++....++..+.+.+ +..+
T Consensus 114 -~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~i~~~eg----------i~i~-- 179 (319)
T PLN03025 114 -GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA-IVRFSRLSDQEILGRLMKVVEAEK----------VPYV-- 179 (319)
T ss_pred -HHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh-cccCCCCCHHHHHHHHHHHHHHcC----------CCCC--
Confidence 12344555566555666778889999999999999985 899999999999999999887632 2222
Q ss_pred ChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q psy4165 151 DYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMS 197 (242)
Q Consensus 151 d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~ 197 (242)
+..++.++..+ ++|++.+++..+.... ..+.++.+++.+
T Consensus 180 --~~~l~~i~~~~----~gDlR~aln~Lq~~~~--~~~~i~~~~v~~ 218 (319)
T PLN03025 180 --PEGLEAIIFTA----DGDMRQALNNLQATHS--GFGFVNQENVFK 218 (319)
T ss_pred --HHHHHHHHHHc----CCCHHHHHHHHHHHHh--cCCCCCHHHHHH
Confidence 33346777764 4577777775554332 234566655543
No 90
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=1.4e-07 Score=86.46 Aligned_cols=149 Identities=18% Similarity=0.152 Sum_probs=106.4
Q ss_pred cEEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeE
Q psy4165 13 DYAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFM 89 (242)
Q Consensus 13 ~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~ 89 (242)
.++.+++++- .+...++++.+.+... ++.-|++|||+|.+. ...++.||+.|++.+..+.
T Consensus 86 Dv~eidaas~-----~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLLK~LEePp~~v~ 148 (491)
T PRK14964 86 DVIEIDAASN-----TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALLKTLEEPAPHVK 148 (491)
T ss_pred CEEEEecccC-----CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHHHHHhCCCCCeE
Confidence 3455555421 2345677777776532 235799999999883 2356889999988888889
Q ss_pred EEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHH
Q psy4165 90 LVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGR 169 (242)
Q Consensus 90 vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~a 169 (242)
+|++|+.++.|.+.+++|+. .++|.+++.++....++..+.+.+ +..+ +..++.|++.++| +.+
T Consensus 149 fIlatte~~Kl~~tI~SRc~-~~~f~~l~~~el~~~L~~ia~~Eg----------i~i~----~eAL~lIa~~s~G-slR 212 (491)
T PRK14964 149 FILATTEVKKIPVTIISRCQ-RFDLQKIPTDKLVEHLVDIAKKEN----------IEHD----EESLKLIAENSSG-SMR 212 (491)
T ss_pred EEEEeCChHHHHHHHHHhhe-eeecccccHHHHHHHHHHHHHHcC----------CCCC----HHHHHHHHHHcCC-CHH
Confidence 99999999999999999995 799999999999999999887632 2222 3445788888864 778
Q ss_pred HHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 170 EIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 170 di~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
++.+++. ++..+.. +.+|.+++.+.
T Consensus 213 ~alslLd--qli~y~~--~~It~e~V~~l 237 (491)
T PRK14964 213 NALFLLE--QAAIYSN--NKISEKSVRDL 237 (491)
T ss_pred HHHHHHH--HHHHhcC--CCCCHHHHHHH
Confidence 8877776 3334432 35677666553
No 91
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=1e-07 Score=91.88 Aligned_cols=118 Identities=21% Similarity=0.248 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++...+... ++..|+||||+|.+- ...++.||+.|++.++.+.+|++|+.+..|.+.|++|
T Consensus 102 DdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSR 169 (944)
T PRK14949 102 DDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 (944)
T ss_pred HHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHh
Confidence 3455555544321 224799999999992 4567899999998888889999999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
+. .++|++++.++-...|+..+...+ +. ++ +..+..|++.+.| +++++-+++.
T Consensus 170 Cq-~f~fkpLs~eEI~~~L~~il~~Eg----------I~---~e-deAL~lIA~~S~G-d~R~ALnLLd 222 (944)
T PRK14949 170 CL-QFNLKSLTQDEIGTQLNHILTQEQ----------LP---FE-AEALTLLAKAANG-SMRDALSLTD 222 (944)
T ss_pred he-EEeCCCCCHHHHHHHHHHHHHHcC----------CC---CC-HHHHHHHHHHcCC-CHHHHHHHHH
Confidence 84 899999999999999998886521 11 11 3345677877664 6667777775
No 92
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=7.3e-08 Score=90.44 Aligned_cols=135 Identities=17% Similarity=0.205 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.++.. ++.-|++|||+|.+. ....+.||+.|++..+.+++|++|+.++.|.+.|++
T Consensus 101 v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~S 168 (576)
T PRK14965 101 VDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILS 168 (576)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHH
Confidence 45677777766532 123699999999883 235688999998888889999999999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE 186 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~ 186 (242)
|+. .++|..++.++-...+...+.+.+. ..+ ...+..+++.+.| +.+++.+++. +...+..
T Consensus 169 Rc~-~~~f~~l~~~~i~~~L~~i~~~egi----------~i~----~~al~~la~~a~G-~lr~al~~Ld--qliay~g- 229 (576)
T PRK14965 169 RCQ-RFDFRRIPLQKIVDRLRYIADQEGI----------SIS----DAALALVARKGDG-SMRDSLSTLD--QVLAFCG- 229 (576)
T ss_pred hhh-hhhcCCCCHHHHHHHHHHHHHHhCC----------CCC----HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhcc-
Confidence 986 8999999999998888888876322 222 3345778888764 6666666665 3333332
Q ss_pred CCCccHHHHH
Q psy4165 187 DGVLTEAMVM 196 (242)
Q Consensus 187 ~~~~~~~~~~ 196 (242)
+.++.+++.
T Consensus 230 -~~It~edV~ 238 (576)
T PRK14965 230 -DAVGDDDVA 238 (576)
T ss_pred -CCCCHHHHH
Confidence 235555543
No 93
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=8.8e-08 Score=88.36 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++...+.. ..++.||+|||+|.+. ...++.||..+++.+..+++|++|+.+..+++.+.+|
T Consensus 99 d~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 99 EDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred HHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 345555444432 2236899999999762 2456788888987777888888999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
+. .++|++|+.++-...++..+.+.+. .. + ...+..+++.+.| +.+++.+++. ..... .
T Consensus 167 c~-~~~f~~ls~~el~~~L~~i~~~egi----------~i---~-~~Al~~ia~~s~G-dlR~aln~Le---kl~~~--~ 225 (504)
T PRK14963 167 TQ-HFRFRRLTEEEIAGKLRRLLEAEGR----------EA---E-PEALQLVARLADG-AMRDAESLLE---RLLAL--G 225 (504)
T ss_pred eE-EEEecCCCHHHHHHHHHHHHHHcCC----------CC---C-HHHHHHHHHHcCC-CHHHHHHHHH---HHHhc--C
Confidence 86 8999999999999999999876322 11 1 3344677777653 4444444443 33222 3
Q ss_pred CCccHHHHHHH
Q psy4165 188 GVLTEAMVMSK 198 (242)
Q Consensus 188 ~~~~~~~~~~a 198 (242)
+.+|.+++.+.
T Consensus 226 ~~It~~~V~~~ 236 (504)
T PRK14963 226 TPVTRKQVEEA 236 (504)
T ss_pred CCCCHHHHHHH
Confidence 46777766554
No 94
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.88 E-value=3.6e-08 Score=94.30 Aligned_cols=171 Identities=19% Similarity=0.256 Sum_probs=106.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHh----CCCcEEEEEecccccccccCCCccchHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASS----SRKGLVLFIDEADAFLRKRSSETISESLRATLNA 76 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~----~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~ 76 (242)
.+|+++|+.++.+|+.+++... +.+.+++.+..+.. ..++.||||||+|.+.. .....
T Consensus 67 TLA~aIA~~~~~~f~~lna~~~------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~------------~qQda 128 (725)
T PRK13341 67 TLARIIANHTRAHFSSLNAVLA------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK------------AQQDA 128 (725)
T ss_pred HHHHHHHHHhcCcceeehhhhh------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH------------HHHHH
Confidence 3799999999999998887532 22334455544421 22368999999999842 12234
Q ss_pred HHHHhccCCCCeEEEEec--CCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhH
Q psy4165 77 FLYRTGEQSDKFMLVLAS--NTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTS 154 (242)
Q Consensus 77 lL~~l~~~~~~v~vI~tT--n~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~ 154 (242)
|+..++ .+.+++|++| |....+++++++|+. .++|++++.+++..|++.++....... +..++ .++ +.
T Consensus 129 LL~~lE--~g~IiLI~aTTenp~~~l~~aL~SR~~-v~~l~pLs~edi~~IL~~~l~~~~~~~---g~~~v---~I~-de 198 (725)
T PRK13341 129 LLPWVE--NGTITLIGATTENPYFEVNKALVSRSR-LFRLKSLSDEDLHQLLKRALQDKERGY---GDRKV---DLE-PE 198 (725)
T ss_pred HHHHhc--CceEEEEEecCCChHhhhhhHhhcccc-ceecCCCCHHHHHHHHHHHHHHHHhhc---CCccc---CCC-HH
Confidence 555554 3557777765 445679999999874 799999999999999999987421100 00011 122 33
Q ss_pred hHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh---cCC--CccHHHHHHHHHHHH
Q psy4165 155 LCSKIAHVTEGLSGREIAKLGVAWQASAYAS---EDG--VLTEAMVMSKVEDSI 203 (242)
Q Consensus 155 ~l~~la~~t~g~s~adi~~lv~~a~~~~~~~---~~~--~~~~~~~~~a~~~~~ 203 (242)
.++.|++.+ ++|++.+.+..+.+.... ..+ .++.+.+.+.+.+..
T Consensus 199 aL~~La~~s----~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~ 248 (725)
T PRK13341 199 AEKHLVDVA----NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRA 248 (725)
T ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhh
Confidence 456777765 445665555444433321 112 377777777776643
No 95
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.88 E-value=8.4e-08 Score=87.30 Aligned_cols=177 Identities=11% Similarity=0.133 Sum_probs=110.9
Q ss_pred hHHHHHHhc-----CCcEEEEecCCcccccchH--HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHH
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPMGSSG--VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATL 74 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~~g~~--e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l 74 (242)
|++|+|+++ +..++++++.++...+..+ ...+..+.+.-+ .. +.+|+|||++.+.+... ....+
T Consensus 146 Ll~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~-~~-~dvLlIDDi~~l~~~~~-------~q~el 216 (440)
T PRK14088 146 LLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYR-KK-VDVLLIDDVQFLIGKTG-------VQTEL 216 (440)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHH-hc-CCEEEEechhhhcCcHH-------HHHHH
Confidence 688888875 5678888887765432111 112223222222 23 78999999999864321 12222
Q ss_pred HHHHHHhccCCCCeEEEEecCCccc---ccHHHhccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC
Q psy4165 75 NAFLYRTGEQSDKFMLVLASNTPQQ---FDWAVNDRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149 (242)
Q Consensus 75 ~~lL~~l~~~~~~v~vI~tTn~~~~---ld~al~~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~ 149 (242)
-.++..+.. .++.+||++.+.|.. +++.+.+|| ...+.+++|+.+.|..|++..+... ++.++
T Consensus 217 f~~~n~l~~-~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~----------~~~l~- 284 (440)
T PRK14088 217 FHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIE----------HGELP- 284 (440)
T ss_pred HHHHHHHHH-cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhc----------CCCCC-
Confidence 233333322 234466666667665 456677888 4678899999999999999988642 22222
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~ 204 (242)
+..++.||+.+.| +.++|..+++...+.+.. ....+|.+...+++.....
T Consensus 285 ---~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~-~~~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 285 ---EEVLNFVAENVDD-NLRRLRGAIIKLLVYKET-TGEEVDLKEAILLLKDFIK 334 (440)
T ss_pred ---HHHHHHHHhcccc-CHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhc
Confidence 3345889998874 788888888744333332 3346888888888877643
No 96
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.85 E-value=1.3e-07 Score=82.86 Aligned_cols=166 Identities=16% Similarity=0.157 Sum_probs=102.2
Q ss_pred hHHHHHHhcC-----CcEEEEecCCccccc--------------ch-------HHHHHHHHHHHHHhC----CCcEEEEE
Q psy4165 2 FAKKLAHHSG-----MDYAIMTGGDVAPMG--------------SS-------GVTAIHKVFDWASSS----RKGLVLFI 51 (242)
Q Consensus 2 lA~aiA~e~~-----~~~~~v~~~~l~~~~--------------g~-------~e~~l~~~f~~A~~~----~~p~Il~i 51 (242)
+|+++|+++. .+++.++++++.... +. ....++.+....... .++.+|+|
T Consensus 52 la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlil 131 (337)
T PRK12402 52 AVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILL 131 (337)
T ss_pred HHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEE
Confidence 7888888874 356788876653210 11 122344443333222 22469999
Q ss_pred ecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHh
Q psy4165 52 DEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFD 131 (242)
Q Consensus 52 DeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~ 131 (242)
||+|.+.. .. .+.|+..++.......+|.+|+.+..+.+.+.+|+. .+++++|+.++...+++..+.
T Consensus 132 De~~~l~~---------~~---~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~-~v~~~~~~~~~~~~~l~~~~~ 198 (337)
T PRK12402 132 DNAEALRE---------DA---QQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCL-PLFFRAPTDDELVDVLESIAE 198 (337)
T ss_pred eCcccCCH---------HH---HHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCce-EEEecCCCHHHHHHHHHHHHH
Confidence 99998832 11 233444444334445566677777888889998984 899999999999999999887
Q ss_pred ccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 132 KFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
+.+. . ++ +..+..++..+ ++|++.+++.+...+ ...+.+|.+++.+.+.
T Consensus 199 ~~~~----------~---~~-~~al~~l~~~~----~gdlr~l~~~l~~~~--~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 199 AEGV----------D---YD-DDGLELIAYYA----GGDLRKAILTLQTAA--LAAGEITMEAAYEALG 247 (337)
T ss_pred HcCC----------C---CC-HHHHHHHHHHc----CCCHHHHHHHHHHHH--HcCCCCCHHHHHHHhC
Confidence 6322 2 22 33446777765 456666666444333 3344688887776543
No 97
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.85 E-value=1e-07 Score=86.80 Aligned_cols=178 Identities=10% Similarity=0.093 Sum_probs=106.6
Q ss_pred hHHHHHHhc---CCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAF 77 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~l 77 (242)
|++|+++++ +..+++++...+...+ ......-...|..... .+.+|+|||++.+.++.. ....+-.+
T Consensus 157 Ll~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~--~~dvLiIDDiq~l~~k~~-------~qeelf~l 227 (445)
T PRK12422 157 LMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR--NVDALFIEDIEVFSGKGA-------TQEEFFHT 227 (445)
T ss_pred HHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc--cCCEEEEcchhhhcCChh-------hHHHHHHH
Confidence 678888865 6788888876664322 1000000112333222 268999999999854321 12222233
Q ss_pred HHHhccCCCCeEEEEecCCcc---cccHHHhcccc--cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCCh
Q psy4165 78 LYRTGEQSDKFMLVLASNTPQ---QFDWAVNDRLD--EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDY 152 (242)
Q Consensus 78 L~~l~~~~~~v~vI~tTn~~~---~ld~al~~Rfd--~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~ 152 (242)
++.+.. .++.+++.+++.|. .+++.|.+||. ..+.+++|+.++|..|++......+ +.++
T Consensus 228 ~N~l~~-~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~----------~~l~---- 292 (445)
T PRK12422 228 FNSLHT-EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS----------IRIE---- 292 (445)
T ss_pred HHHHHH-CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC----------CCCC----
Confidence 333312 23445555555554 46788899995 7999999999999999999887632 1121
Q ss_pred hHhHHHHHHhCCCCCHHHHHHHHHHHHH-HHhhh-cCCCccHHHHHHHHHHHHH
Q psy4165 153 TSLCSKIAHVTEGLSGREIAKLGVAWQA-SAYAS-EDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 153 ~~~l~~la~~t~g~s~adi~~lv~~a~~-~~~~~-~~~~~~~~~~~~a~~~~~~ 204 (242)
+..++.|+.... -+.+.|...+..... .+++. ....+|.+..++.+.....
T Consensus 293 ~evl~~la~~~~-~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 293 ETALDFLIEALS-SNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhh
Confidence 334467888766 356666666653321 13332 3347899999888877643
No 98
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=2.6e-07 Score=85.73 Aligned_cols=134 Identities=18% Similarity=0.191 Sum_probs=92.3
Q ss_pred HHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhccc
Q psy4165 32 AIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRL 108 (242)
Q Consensus 32 ~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rf 108 (242)
.++++.+.+.. .++.-|++|||+|.+. ....+.||..|++.++.+++|++|+.+..+.+.+++|+
T Consensus 103 ~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc 170 (546)
T PRK14957 103 ETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------KQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 (546)
T ss_pred HHHHHHHHHHhhhhcCCcEEEEEechhhcc------------HHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHhe
Confidence 45555554442 2235799999999983 23567899999888788888888888999999999999
Q ss_pred ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCC
Q psy4165 109 DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDG 188 (242)
Q Consensus 109 d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~ 188 (242)
..++|.+++.++-...++..+.+.+. .. + ...+..++..+. -+.+++-+++. ++..+.. +
T Consensus 171 -~~~~f~~Ls~~eI~~~L~~il~~egi----------~~---e-~~Al~~Ia~~s~-GdlR~alnlLe--k~i~~~~--~ 230 (546)
T PRK14957 171 -IQLHLKHISQADIKDQLKIILAKENI----------NS---D-EQSLEYIAYHAK-GSLRDALSLLD--QAISFCG--G 230 (546)
T ss_pred -eeEEeCCCCHHHHHHHHHHHHHHcCC----------CC---C-HHHHHHHHHHcC-CCHHHHHHHHH--HHHHhcc--C
Confidence 49999999999999888888876322 11 1 334466777764 45556656654 2233322 4
Q ss_pred CccHHHHHH
Q psy4165 189 VLTEAMVMS 197 (242)
Q Consensus 189 ~~~~~~~~~ 197 (242)
.++.+++.+
T Consensus 231 ~It~~~V~~ 239 (546)
T PRK14957 231 ELKQAQIKQ 239 (546)
T ss_pred CCCHHHHHH
Confidence 566666554
No 99
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=1.1e-07 Score=88.28 Aligned_cols=137 Identities=22% Similarity=0.224 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.+... ++..|++|||+|.+. ....+.||+.+++.++.+++|++|+.+..+.+.+++
T Consensus 101 vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~S 168 (527)
T PRK14969 101 VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS 168 (527)
T ss_pred HHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHH
Confidence 44577777766532 124699999999883 235678999998888888999989889999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE 186 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~ 186 (242)
|+ ..++|++|+.++-...+...+.+.+ +.. + ...+..+++.+. -+.+++.+++. ++.++ .
T Consensus 169 Rc-~~~~f~~l~~~~i~~~L~~il~~eg----------i~~---~-~~al~~la~~s~-Gslr~al~lld--qai~~--~ 228 (527)
T PRK14969 169 RC-LQFNLKQMPPPLIVSHLQHILEQEN----------IPF---D-ATALQLLARAAA-GSMRDALSLLD--QAIAY--G 228 (527)
T ss_pred HH-HHHhcCCCCHHHHHHHHHHHHHHcC----------CCC---C-HHHHHHHHHHcC-CCHHHHHHHHH--HHHHh--c
Confidence 98 5899999999999988888886522 111 1 334467777765 46777777776 33333 3
Q ss_pred CCCccHHHHHHH
Q psy4165 187 DGVLTEAMVMSK 198 (242)
Q Consensus 187 ~~~~~~~~~~~a 198 (242)
.+.++.+++...
T Consensus 229 ~~~I~~~~v~~~ 240 (527)
T PRK14969 229 GGTVNESEVRAM 240 (527)
T ss_pred CCCcCHHHHHHH
Confidence 456666665554
No 100
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=1.4e-07 Score=87.84 Aligned_cols=135 Identities=21% Similarity=0.217 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++.+...+... .+.-|++|||+|.+-. ...+.||..|++.+..+++|++|+.+..|.+.+++|
T Consensus 102 d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~------------~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SR 169 (605)
T PRK05896 102 DEIRNIIDNINYLPTTFKYKVYIIDEAHMLST------------SAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISR 169 (605)
T ss_pred HHHHHHHHHHHhchhhCCcEEEEEechHhCCH------------HHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhh
Confidence 4466666655532 1246999999998831 245788988988888889999999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
+. .++|++|+.++....++..+.+.+. . ++ ...+..++..+.| +++++.+++. ....+..
T Consensus 170 cq-~ieF~~Ls~~eL~~~L~~il~kegi----------~---Is-~eal~~La~lS~G-dlR~AlnlLe--kL~~y~~-- 229 (605)
T PRK05896 170 CQ-RYNFKKLNNSELQELLKSIAKKEKI----------K---IE-DNAIDKIADLADG-SLRDGLSILD--QLSTFKN-- 229 (605)
T ss_pred hh-hcccCCCCHHHHHHHHHHHHHHcCC----------C---CC-HHHHHHHHHHcCC-cHHHHHHHHH--HHHhhcC--
Confidence 97 8999999999999999988875321 1 12 3334677777764 6666666665 2233322
Q ss_pred CCccHHHHHH
Q psy4165 188 GVLTEAMVMS 197 (242)
Q Consensus 188 ~~~~~~~~~~ 197 (242)
+.++.+++.+
T Consensus 230 ~~It~e~V~e 239 (605)
T PRK05896 230 SEIDIEDINK 239 (605)
T ss_pred CCCCHHHHHH
Confidence 2266665554
No 101
>KOG2004|consensus
Probab=98.85 E-value=5.7e-08 Score=90.46 Aligned_cols=127 Identities=16% Similarity=0.203 Sum_probs=94.1
Q ss_pred hHHHHHHhcCCcEEEEecCCcc------c----ccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVA------P----MGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~------~----~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
+||.||..+|..||.++.+-+. . |+|.-...+-+-+...+..+ -+++|||||.++. ...++..+..-
T Consensus 454 I~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~N--PliLiDEvDKlG~-g~qGDPasALL 530 (906)
T KOG2004|consen 454 IAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTEN--PLILIDEVDKLGS-GHQGDPASALL 530 (906)
T ss_pred HHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCC--ceEEeehhhhhCC-CCCCChHHHHH
Confidence 6899999999999999865443 1 44777788888888999887 5889999999982 12222122111
Q ss_pred HHH-----HHHHHH-hc--cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 72 ATL-----NAFLYR-TG--EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 72 ~~l-----~~lL~~-l~--~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
.++ ..|+.+ |+ -.-++|++|+|+|..+.||++|+.|.. .|+++-...++...|-+.||-.
T Consensus 531 ElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRME-vIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 531 ELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRME-VIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred HhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhh-eeeccCccHHHHHHHHHHhhhh
Confidence 111 122222 12 123579999999999999999999997 8999999999999999999854
No 102
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=5.9e-08 Score=86.88 Aligned_cols=111 Identities=16% Similarity=0.250 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++++.+... ++..|+||||+|.+.. ...+.||+.|++.+.++++|.+|+.++.|.|.+++|
T Consensus 100 ~~iR~l~~~~~~~p~~~~~kViiIDead~m~~------------~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSR 167 (394)
T PRK07940 100 DEVRELVTIAARRPSTGRWRIVVIEDADRLTE------------RAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSR 167 (394)
T ss_pred HHHHHHHHHHHhCcccCCcEEEEEechhhcCH------------HHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhh
Confidence 4577888777642 1246999999999942 234778888887777777777777799999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHH
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~ 173 (242)
+. .++|++|+.++..+.|..... . + ...+..++..+.|..+.-++.
T Consensus 168 c~-~i~f~~~~~~~i~~~L~~~~~---~---------------~-~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 168 CR-HVALRTPSVEAVAEVLVRRDG---V---------------D-PETARRAARASQGHIGRARRL 213 (394)
T ss_pred Ce-EEECCCCCHHHHHHHHHHhcC---C---------------C-HHHHHHHHHHcCCCHHHHHHH
Confidence 95 999999999998777763211 1 1 223356888888877655443
No 103
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=4.9e-07 Score=80.45 Aligned_cols=165 Identities=18% Similarity=0.179 Sum_probs=103.6
Q ss_pred hHHHHHHhcCCcEEEEecCCc----c--cc-cchHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDV----A--PM-GSSGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l----~--~~-~g~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
+|+++|+.++++.....+..+ . +. ...+...++.+++.+... +++.||+|||+|.+..
T Consensus 55 ~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------ 122 (367)
T PRK14970 55 CARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------ 122 (367)
T ss_pred HHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------
Confidence 678888887653221111100 0 01 112345677878776532 2357999999998732
Q ss_pred HHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 72 ATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 72 ~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
..++.|+..+++.+...++|++|+.+..+.+++.+|+. .+++++|+.++...++...+.+.+ +..+
T Consensus 123 ~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~~~~g----------~~i~--- 188 (367)
T PRK14970 123 AAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIAVKEG----------IKFE--- 188 (367)
T ss_pred HHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcce-eEecCCccHHHHHHHHHHHHHHcC----------CCCC---
Confidence 23577888787666666777778888999999999986 789999999999999998887632 2222
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
...++.++..+.| +.+.+.+.+. ....++.+ . +|.+++...
T Consensus 189 -~~al~~l~~~~~g-dlr~~~~~le--kl~~y~~~-~-it~~~v~~~ 229 (367)
T PRK14970 189 -DDALHIIAQKADG-ALRDALSIFD--RVVTFCGK-N-ITRQAVTEN 229 (367)
T ss_pred -HHHHHHHHHhCCC-CHHHHHHHHH--HHHHhcCC-C-CCHHHHHHH
Confidence 3344777777653 5555555554 22333322 2 555555444
No 104
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.81 E-value=3e-07 Score=75.95 Aligned_cols=164 Identities=13% Similarity=0.143 Sum_probs=103.1
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
||+++++++ +.++++++++.+..+. ..++.... ++.+|+|||+|.+... ......+..++
T Consensus 54 la~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~---~~~lLvIDdi~~l~~~-------~~~~~~L~~~l 116 (226)
T TIGR03420 54 LLQAACAAAEERGKSAIYLPLAELAQAD-------PEVLEGLE---QADLVCLDDVEAIAGQ-------PEWQEALFHLY 116 (226)
T ss_pred HHHHHHHHHHhcCCcEEEEeHHHHHHhH-------HHHHhhcc---cCCEEEEeChhhhcCC-------hHHHHHHHHHH
Confidence 678888765 4678888887764321 23333322 2469999999998432 11123344455
Q ss_pred HHhccCCCCeEEEEecCCccccc---HHHhccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 79 YRTGEQSDKFMLVLASNTPQQFD---WAVNDRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 79 ~~l~~~~~~v~vI~tTn~~~~ld---~al~~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
..+...+ ..+|+.++..+..++ +.+.+|| ...+++|+|+.+++..+++.+..+.+ +.++ .
T Consensus 117 ~~~~~~~-~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~----------~~~~----~ 181 (226)
T TIGR03420 117 NRVREAG-GRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG----------LQLP----D 181 (226)
T ss_pred HHHHHcC-CeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC----------CCCC----H
Confidence 4443222 334554444554443 7778787 47899999999999999998876422 1111 3
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
..+..|+... +-+++++.+++..+..++.. ..+.++.+.+.+.+
T Consensus 182 ~~l~~L~~~~-~gn~r~L~~~l~~~~~~~~~-~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 182 EVADYLLRHG-SRDMGSLMALLDALDRASLA-AKRKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHh
Confidence 3457788864 47899999999866654444 33568877766554
No 105
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=2.6e-07 Score=86.31 Aligned_cols=136 Identities=18% Similarity=0.205 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.+... ++.-|++|||+|.+. ....+.||..+++.+..+++|++|+.+..|.++|++
T Consensus 101 vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~S 168 (563)
T PRK06647 101 VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS 168 (563)
T ss_pred HHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHH
Confidence 34566665554422 235799999999883 235678999998888888999999989999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE 186 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~ 186 (242)
|+. .++|.+|+.++..+.++..+.+. ++..+ ...+..|++.+.| +.+++.+++. +...++
T Consensus 169 Rc~-~~~f~~l~~~el~~~L~~i~~~e----------gi~id----~eAl~lLa~~s~G-dlR~alslLd--klis~~-- 228 (563)
T PRK06647 169 RCQ-HFNFRLLSLEKIYNMLKKVCLED----------QIKYE----DEALKWIAYKSTG-SVRDAYTLFD--QVVSFS-- 228 (563)
T ss_pred hce-EEEecCCCHHHHHHHHHHHHHHc----------CCCCC----HHHHHHHHHHcCC-CHHHHHHHHH--HHHhhc--
Confidence 997 78999999999999999887652 22222 3344778888765 7777777776 333332
Q ss_pred CCCccHHHHHH
Q psy4165 187 DGVLTEAMVMS 197 (242)
Q Consensus 187 ~~~~~~~~~~~ 197 (242)
.+.++.+++..
T Consensus 229 ~~~It~e~V~~ 239 (563)
T PRK06647 229 DSDITLEQIRS 239 (563)
T ss_pred CCCCCHHHHHH
Confidence 24566665554
No 106
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=4.8e-07 Score=83.22 Aligned_cols=136 Identities=23% Similarity=0.265 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++.+.+.+... +++.|++|||+|.+. ....+.||..+++.+..+++|.+|+.++.+++++.+|
T Consensus 102 d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SR 169 (486)
T PRK14953 102 DDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSR 169 (486)
T ss_pred HHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHh
Confidence 3455555555432 235799999999883 2345778888887777778888888899999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
+. .++|++|+.++....++..+.+.+.. . + ...+..++..+.| +.+++.+++. .+..+ ..
T Consensus 170 c~-~i~f~~ls~~el~~~L~~i~k~egi~----------i---d-~~al~~La~~s~G-~lr~al~~Ld--kl~~~--~~ 229 (486)
T PRK14953 170 CQ-RFIFSKPTKEQIKEYLKRICNEEKIE----------Y---E-EKALDLLAQASEG-GMRDAASLLD--QASTY--GE 229 (486)
T ss_pred ce-EEEcCCCCHHHHHHHHHHHHHHcCCC----------C---C-HHHHHHHHHHcCC-CHHHHHHHHH--HHHHh--cC
Confidence 86 79999999999999999988763221 1 1 2334677777653 4556655554 22233 24
Q ss_pred CCccHHHHHHH
Q psy4165 188 GVLTEAMVMSK 198 (242)
Q Consensus 188 ~~~~~~~~~~a 198 (242)
+.+|.+++.+.
T Consensus 230 ~~It~~~V~~~ 240 (486)
T PRK14953 230 GKVTIKVVEEF 240 (486)
T ss_pred CCcCHHHHHHH
Confidence 56776666653
No 107
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.80 E-value=7e-08 Score=86.84 Aligned_cols=169 Identities=15% Similarity=0.164 Sum_probs=103.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc--ccchH-HHHHHHHHHHH----HhCCCcEEEEEecccccccccCCCccch--HHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP--MGSSG-VTAIHKVFDWA----SSSRKGLVLFIDEADAFLRKRSSETISE--SLR 71 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~--~~g~~-e~~l~~~f~~A----~~~~~p~Il~iDeiD~l~~~r~~~~~~~--~~~ 71 (242)
++|+++|..+++||+.++++.+.. +.|+. +..+..++..+ .... ++||||||||.+..++.+..... ...
T Consensus 123 ~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~-~gIi~iDEIdkl~~~~~~~~~~~d~s~~ 201 (412)
T PRK05342 123 LLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQ-RGIVYIDEIDKIARKSENPSITRDVSGE 201 (412)
T ss_pred HHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcC-CcEEEEechhhhccccCCCCcCCCcccH
Confidence 489999999999999999988764 34654 45556655432 2233 89999999999987643321100 011
Q ss_pred HHHHHHHHHhccC-------------CCCeEEEEecCCcc----------------------------------------
Q psy4165 72 ATLNAFLYRTGEQ-------------SDKFMLVLASNTPQ---------------------------------------- 98 (242)
Q Consensus 72 ~~l~~lL~~l~~~-------------~~~v~vI~tTn~~~---------------------------------------- 98 (242)
.+.+.||..|+.. ....++|.|+|-..
T Consensus 202 ~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~ 281 (412)
T PRK05342 202 GVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGEL 281 (412)
T ss_pred HHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHH
Confidence 3445555555311 01235555555411
Q ss_pred ------------cccHHHhcccccEEEeCCCCHHHHHHHHHH----HHhccccchhhhcccccccCCCCh-hHhHHHHHH
Q psy4165 99 ------------QFDWAVNDRLDEMVEFPLPTLNERERLVRL----YFDKFVLQPAAQGKRRLKVAPFDY-TSLCSKIAH 161 (242)
Q Consensus 99 ------------~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~----~l~~~~~~~~~~~~~~~~~~~~d~-~~~l~~la~ 161 (242)
.+.|.|++|+|..+.|.+.+.++..+|+.. .++++...... .++. +.+ +..++.|++
T Consensus 282 ~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~---~~i~---L~~t~~al~~Ia~ 355 (412)
T PRK05342 282 LKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEM---DGVE---LEFTDEALEAIAK 355 (412)
T ss_pred HHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHh---CCcE---EEECHHHHHHHHH
Confidence 146788899999999999999999999984 33322110000 0111 111 334567777
Q ss_pred h--CCCCCHHHHHHHHH
Q psy4165 162 V--TEGLSGREIAKLGV 176 (242)
Q Consensus 162 ~--t~g~s~adi~~lv~ 176 (242)
. ..++-.+-|+.++.
T Consensus 356 ~~~~~~~GAR~Lrriie 372 (412)
T PRK05342 356 KAIERKTGARGLRSILE 372 (412)
T ss_pred hCCCCCCCCchHHHHHH
Confidence 6 34566788888876
No 108
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=6.9e-07 Score=82.61 Aligned_cols=134 Identities=19% Similarity=0.226 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++...+... ++.-|++|||+|.+. ....+.||..|++.+..+.+|++|+.+..|.+++++|
T Consensus 100 d~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SR 167 (535)
T PRK08451 100 DDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSR 167 (535)
T ss_pred HHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhh
Confidence 4566666554321 223699999999883 2456788999987777788888888899999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
.. .++|.+++.++-...++..+.+.+ +..+ ...+..+++...| +.+++.+++. ++..++ .
T Consensus 168 c~-~~~F~~Ls~~ei~~~L~~Il~~EG----------i~i~----~~Al~~Ia~~s~G-dlR~alnlLd--qai~~~--~ 227 (535)
T PRK08451 168 TQ-HFRFKQIPQNSIISHLKTILEKEG----------VSYE----PEALEILARSGNG-SLRDTLTLLD--QAIIYC--K 227 (535)
T ss_pred ce-eEEcCCCCHHHHHHHHHHHHHHcC----------CCCC----HHHHHHHHHHcCC-cHHHHHHHHH--HHHHhc--C
Confidence 75 999999999999998888887532 2121 3445778887765 7777777765 333343 3
Q ss_pred CCccHHHHH
Q psy4165 188 GVLTEAMVM 196 (242)
Q Consensus 188 ~~~~~~~~~ 196 (242)
+.+|.+++.
T Consensus 228 ~~It~~~V~ 236 (535)
T PRK08451 228 NAITESKVA 236 (535)
T ss_pred CCCCHHHHH
Confidence 345555444
No 109
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=5.8e-07 Score=85.43 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.+... ++..|++|||+|.+.. ...+.||..|++.+..+++|++|+.++.|++.+++
T Consensus 100 vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~------------~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~S 167 (725)
T PRK07133 100 VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK------------SAFNALLKTLEEPPKHVIFILATTEVHKIPLTILS 167 (725)
T ss_pred HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH------------HHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHh
Confidence 45577777776643 2357999999999832 35788999998888888999999999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE 186 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~ 186 (242)
|+. .++|.+|+.++....++..+.+.+.. .+ ...+..+|..+. -+.+++..++. ....+.
T Consensus 168 Rcq-~ieF~~L~~eeI~~~L~~il~kegI~----------id----~eAl~~LA~lS~-GslR~AlslLe--kl~~y~-- 227 (725)
T PRK07133 168 RVQ-RFNFRRISEDEIVSRLEFILEKENIS----------YE----KNALKLIAKLSS-GSLRDALSIAE--QVSIFG-- 227 (725)
T ss_pred hce-eEEccCCCHHHHHHHHHHHHHHcCCC----------CC----HHHHHHHHHHcC-CCHHHHHHHHH--HHHHhc--
Confidence 996 89999999999999999887753221 11 223467777765 45666666665 223332
Q ss_pred CCCccHHHHHH
Q psy4165 187 DGVLTEAMVMS 197 (242)
Q Consensus 187 ~~~~~~~~~~~ 197 (242)
.+.++.+++.+
T Consensus 228 ~~~It~e~V~e 238 (725)
T PRK07133 228 NNKITLKNVEE 238 (725)
T ss_pred cCCCCHHHHHH
Confidence 33466665544
No 110
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.78 E-value=3.6e-07 Score=76.43 Aligned_cols=130 Identities=13% Similarity=0.097 Sum_probs=84.3
Q ss_pred EEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccc---ccHHHhcccc--cEEEeCCCCHHH
Q psy4165 47 LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQ---FDWAVNDRLD--EMVEFPLPTLNE 121 (242)
Q Consensus 47 ~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~---ld~al~~Rfd--~~i~~~~P~~~~ 121 (242)
.+|+|||++.+.++ ......+-.+++.+-+.+..-+++.+++.|.. +.|.|++|+. ..+++++|+.++
T Consensus 99 dlliiDdi~~~~~~-------~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 99 SLVCIDNIECIAGD-------ELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEE 171 (235)
T ss_pred CEEEEeChhhhcCC-------HHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHH
Confidence 58999999998542 12233344444443222222355566667666 5799999985 799999999999
Q ss_pred HHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 122 RERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 122 R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
|.++++...... ++.++ +..++.|+++.+ =+.+.+..++......+.. ....+|.+.+.+.+
T Consensus 172 ~~~~l~~~a~~~----------~~~l~----~~v~~~L~~~~~-~d~r~l~~~l~~l~~~~l~-~~~~it~~~~k~~l 233 (235)
T PRK08084 172 KLQALQLRARLR----------GFELP----EDVGRFLLKRLD-REMRTLFMTLDQLDRASIT-AQRKLTIPFVKEIL 233 (235)
T ss_pred HHHHHHHHHHHc----------CCCCC----HHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHH
Confidence 999999866542 22222 334578999987 4777888887744322322 23458888777665
No 111
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=4.7e-07 Score=84.72 Aligned_cols=136 Identities=18% Similarity=0.176 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++-+.+... .+.-|++|||+|.+- ....+.||+.|++.+..+++|++|+.+..|.+.|++
T Consensus 100 vd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~S 167 (584)
T PRK14952 100 VDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRS 167 (584)
T ss_pred HHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHH
Confidence 34455555544321 224799999999983 236788999999888889999999999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE 186 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~ 186 (242)
|.. .++|..++.++-.+.++..+.+.+ +. ++ +..+..+++... -+.+++.+++. +...+. .
T Consensus 168 Rc~-~~~F~~l~~~~i~~~L~~i~~~eg----------i~---i~-~~al~~Ia~~s~-GdlR~aln~Ld--ql~~~~-~ 228 (584)
T PRK14952 168 RTH-HYPFRLLPPRTMRALIARICEQEG----------VV---VD-DAVYPLVIRAGG-GSPRDTLSVLD--QLLAGA-A 228 (584)
T ss_pred hce-EEEeeCCCHHHHHHHHHHHHHHcC----------CC---CC-HHHHHHHHHHcC-CCHHHHHHHHH--HHHhcc-C
Confidence 974 899999999999999988887632 11 22 233455666543 56666666665 323332 2
Q ss_pred CCCccHHHHH
Q psy4165 187 DGVLTEAMVM 196 (242)
Q Consensus 187 ~~~~~~~~~~ 196 (242)
.+.+|.+++.
T Consensus 229 ~~~It~~~v~ 238 (584)
T PRK14952 229 DTHVTYQRAL 238 (584)
T ss_pred CCCcCHHHHH
Confidence 3445554443
No 112
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.74 E-value=1.6e-07 Score=83.80 Aligned_cols=81 Identities=22% Similarity=0.296 Sum_probs=59.7
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhc----------cCCCCeEEEEec----CCcccccHHHhcccccE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG----------EQSDKFMLVLAS----NTPQQFDWAVNDRLDEM 111 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~----------~~~~~v~vI~tT----n~~~~ld~al~~Rfd~~ 111 (242)
-.||||||||.++.+..+.+..-....+...||.-++ -...+|++|++. ..|.+|=|.|.|||...
T Consensus 248 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~ 327 (441)
T TIGR00390 248 SGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIR 327 (441)
T ss_pred CCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceE
Confidence 4699999999999765322211112235556666653 124578999865 46888999999999999
Q ss_pred EEeCCCCHHHHHHHH
Q psy4165 112 VEFPLPTLNERERLV 126 (242)
Q Consensus 112 i~~~~P~~~~R~~Il 126 (242)
+++.+++.++-.+||
T Consensus 328 v~L~~L~~edL~rIL 342 (441)
T TIGR00390 328 VELQALTTDDFERIL 342 (441)
T ss_pred EECCCCCHHHHHHHh
Confidence 999999999999888
No 113
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.74 E-value=2.7e-07 Score=82.85 Aligned_cols=168 Identities=16% Similarity=0.180 Sum_probs=104.8
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc--ccchH-HHHHHHHHHHH----HhCCCcEEEEEecccccccccCCCccchH--HH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP--MGSSG-VTAIHKVFDWA----SSSRKGLVLFIDEADAFLRKRSSETISES--LR 71 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~--~~g~~-e~~l~~~f~~A----~~~~~p~Il~iDeiD~l~~~r~~~~~~~~--~~ 71 (242)
++|+++|..+++||..++++.+.. +.|+. +..+..++..+ .... |+||||||+|.+.+++.+...... -.
T Consensus 131 ~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~-~gIV~lDEIdkl~~~~~~~s~~~dvsg~ 209 (413)
T TIGR00382 131 LLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQ-KGIIYIDEIDKISRKSENPSITRDVSGE 209 (413)
T ss_pred HHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcc-cceEEecccchhchhhccccccccccch
Confidence 489999999999999999988763 33653 45555555432 1233 899999999999886543221110 01
Q ss_pred HHHHHHHHHhcc-------C------CCCeEEEEecCCc---------------------------c-------------
Q psy4165 72 ATLNAFLYRTGE-------Q------SDKFMLVLASNTP---------------------------Q------------- 98 (242)
Q Consensus 72 ~~l~~lL~~l~~-------~------~~~v~vI~tTn~~---------------------------~------------- 98 (242)
.+.+.||+-|+. . ..+.++|.|+|-. .
T Consensus 210 ~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~ 289 (413)
T TIGR00382 210 GVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLR 289 (413)
T ss_pred hHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHH
Confidence 234445544421 0 1235677777651 0
Q ss_pred ----------cccHHHhcccccEEEeCCCCHHHHHHHHHHH----HhccccchhhhcccccccCCC--Ch-hHhHHHHHH
Q psy4165 99 ----------QFDWAVNDRLDEMVEFPLPTLNERERLVRLY----FDKFVLQPAAQGKRRLKVAPF--DY-TSLCSKIAH 161 (242)
Q Consensus 99 ----------~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~----l~~~~~~~~~~~~~~~~~~~~--d~-~~~l~~la~ 161 (242)
.+.|+|++|+|.++.|.+.+.++..+|+... ++++.. .+....+ .+ +..++.|++
T Consensus 290 ~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~--------~l~~~gi~L~~t~~a~~~Ia~ 361 (413)
T TIGR00382 290 QVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQA--------LFKMDNVELDFEEEALKAIAK 361 (413)
T ss_pred HHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHH--------HhccCCeEEEECHHHHHHHHH
Confidence 1457788999999999999999999999874 332110 0111111 11 334577887
Q ss_pred h--CCCCCHHHHHHHHHH
Q psy4165 162 V--TEGLSGREIAKLGVA 177 (242)
Q Consensus 162 ~--t~g~s~adi~~lv~~ 177 (242)
. ..++-.+-|+.++..
T Consensus 362 ~~~~~~~GAR~Lr~iie~ 379 (413)
T TIGR00382 362 KALERKTGARGLRSIVEG 379 (413)
T ss_pred hCCCCCCCchHHHHHHHH
Confidence 6 345678888888863
No 114
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=6.5e-08 Score=90.20 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=94.7
Q ss_pred hHHHHHHhcCCcEEEEecCCccc----------ccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAP----------MGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~----------~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
|++.||..+|..|+.++.+-+.. |.|.-...+-+-+.+|+..+ -+++|||||.+...- .++..+..-
T Consensus 366 LgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~N--Pv~LLDEIDKm~ss~-rGDPaSALL 442 (782)
T COG0466 366 LGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKN--PVFLLDEIDKMGSSF-RGDPASALL 442 (782)
T ss_pred HHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcC--CeEEeechhhccCCC-CCChHHHHH
Confidence 78999999999999998655431 34777788888899999887 588999999997642 122122111
Q ss_pred HHH-----HHHHHH-hc--cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHh
Q psy4165 72 ATL-----NAFLYR-TG--EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFD 131 (242)
Q Consensus 72 ~~l-----~~lL~~-l~--~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~ 131 (242)
.++ +.|..+ ++ -.-++|++|+|+|..+.||.+|+.|.. .|+++-.+.++..+|-+.||=
T Consensus 443 EVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 443 EVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRME-VIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred hhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhccee-eeeecCCChHHHHHHHHHhcc
Confidence 111 122221 11 123469999999999999999999997 999999999999999999984
No 115
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.74 E-value=7.4e-07 Score=81.33 Aligned_cols=122 Identities=15% Similarity=0.111 Sum_probs=85.2
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHH
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERER 124 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~ 124 (242)
...||+|||+|.+.. ...+.|+..|++.++.+++|++||.+..|.+++++|+. .++|++|+.++-..
T Consensus 121 ~~kvvIIdead~lt~------------~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~-~v~f~~l~~~el~~ 187 (451)
T PRK06305 121 RYKIYIIDEVHMLTK------------EAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQ-KMHLKRIPEETIID 187 (451)
T ss_pred CCEEEEEecHHhhCH------------HHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhce-EEeCCCCCHHHHHH
Confidence 378999999998832 24578888898777788888889999999999999996 89999999999999
Q ss_pred HHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 125 LVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 125 Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
.++..+.+.+ +.. + ...+..|+..+.| +.+++.+.+. ....+. .+.++.+++.+.
T Consensus 188 ~L~~~~~~eg----------~~i---~-~~al~~L~~~s~g-dlr~a~~~Le--kl~~~~--~~~It~~~V~~l 242 (451)
T PRK06305 188 KLALIAKQEG----------IET---S-REALLPIARAAQG-SLRDAESLYD--YVVGLF--PKSLDPDSVAKA 242 (451)
T ss_pred HHHHHHHHcC----------CCC---C-HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhc--cCCcCHHHHHHH
Confidence 8888876532 112 1 2334667777653 4444444443 222222 234666665543
No 116
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.72 E-value=3.4e-07 Score=81.82 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=59.8
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhc----------cCCCCeEEEEec----CCcccccHHHhcccccE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG----------EQSDKFMLVLAS----NTPQQFDWAVNDRLDEM 111 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~----------~~~~~v~vI~tT----n~~~~ld~al~~Rfd~~ 111 (242)
-.||||||||.++.+.++.+..-....+...||.-++ -...+|++|++. ..|.+|-|.|.|||...
T Consensus 250 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~ 329 (443)
T PRK05201 250 NGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIR 329 (443)
T ss_pred CCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceE
Confidence 3699999999999775432211112335556666653 234578999754 56888999999999999
Q ss_pred EEeCCCCHHHHHHHH
Q psy4165 112 VEFPLPTLNERERLV 126 (242)
Q Consensus 112 i~~~~P~~~~R~~Il 126 (242)
+++.+++.++-.+||
T Consensus 330 v~L~~L~~~dL~~IL 344 (443)
T PRK05201 330 VELDALTEEDFVRIL 344 (443)
T ss_pred EECCCCCHHHHHHHh
Confidence 999999999999988
No 117
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=8.1e-07 Score=83.93 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHH
Q psy4165 28 SGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAV 104 (242)
Q Consensus 28 ~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al 104 (242)
.+...++++.+.+... .+.-|++|||+|.+- ....+.||+.|++....+++|++|+++..+-+.|
T Consensus 101 ~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 101 TGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred CCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 3456788888777632 224799999999983 2356888999988888888999899999999999
Q ss_pred hcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 105 NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 105 ~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
++|+. .++|+.|+.++-...+.....+.+. . ++ ...+..+++.+.| +.+++.+++.
T Consensus 169 rSRc~-~~~f~~l~~~ei~~~L~~ia~kegi----------~---is-~~al~~La~~s~G-~lr~A~~lLe 224 (620)
T PRK14948 169 ISRCQ-RFDFRRIPLEAMVQHLSEIAEKESI----------E---IE-PEALTLVAQRSQG-GLRDAESLLD 224 (620)
T ss_pred Hhhee-EEEecCCCHHHHHHHHHHHHHHhCC----------C---CC-HHHHHHHHHHcCC-CHHHHHHHHH
Confidence 99995 7899999888888777777665221 1 11 2334677777654 3455555554
No 118
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.68 E-value=1.1e-06 Score=80.26 Aligned_cols=177 Identities=14% Similarity=0.117 Sum_probs=111.0
Q ss_pred hHHHHHHhc-----CCcEEEEecCCcccccchH-H---HHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHH
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPMGSSG-V---TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~~g~~-e---~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
|++|+++++ +..++++++.++...+-.+ . ..+..+.+..+ .+.+|+|||++.+.++ .....
T Consensus 157 Ll~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~---~~dvLiIDDiq~l~~k-------~~~~e 226 (450)
T PRK14087 157 LLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEIC---QNDVLIIDDVQFLSYK-------EKTNE 226 (450)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhc---cCCEEEEeccccccCC-------HHHHH
Confidence 678888854 4678889888876543111 1 12222222222 2679999999988542 12233
Q ss_pred HHHHHHHHhccCCCCeEEEEecCCccc---ccHHHhccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccccc
Q psy4165 73 TLNAFLYRTGEQSDKFMLVLASNTPQQ---FDWAVNDRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKV 147 (242)
Q Consensus 73 ~l~~lL~~l~~~~~~v~vI~tTn~~~~---ld~al~~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~ 147 (242)
.+-.+++.+.... +-+||.+...|.. +++.|.+|| ...+.+.+|+.++|..|++..+...++ ..
T Consensus 227 ~lf~l~N~~~~~~-k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl----------~~ 295 (450)
T PRK14087 227 IFFTIFNNFIEND-KQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI----------KQ 295 (450)
T ss_pred HHHHHHHHHHHcC-CcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCC----------CC
Confidence 4444444443222 3344443344443 478888898 478889999999999999999975321 00
Q ss_pred CCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc-CCCccHHHHHHHHHHH
Q psy4165 148 APFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE-DGVLTEAMVMSKVEDS 202 (242)
Q Consensus 148 ~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~-~~~~~~~~~~~a~~~~ 202 (242)
.++ +..++.|+..+.| +++.+..+++.+...+.... ...+|.+.+.+++...
T Consensus 296 -~l~-~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 296 -EVT-EEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred -CCC-HHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 122 4456889998875 88888888885553333332 2578999888888765
No 119
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.68 E-value=5.7e-07 Score=72.45 Aligned_cols=86 Identities=16% Similarity=0.270 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++.+.+.. .++..||+|||+|.+.. ...+.||..|++.+...++|++||.+..|++++.+|
T Consensus 79 ~~i~~i~~~~~~~~~~~~~kviiide~~~l~~------------~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr 146 (188)
T TIGR00678 79 DQVRELVEFLSRTPQESGRRVVIIEDAERMNE------------AAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSR 146 (188)
T ss_pred HHHHHHHHHHccCcccCCeEEEEEechhhhCH------------HHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhh
Confidence 456666666654 23368999999999842 235678888877777778888888889999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHH
Q psy4165 108 LDEMVEFPLPTLNERERLVRLY 129 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~ 129 (242)
+. .++|++|+.++..++++..
T Consensus 147 ~~-~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 147 CQ-VLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred cE-EeeCCCCCHHHHHHHHHHc
Confidence 95 8999999999988877765
No 120
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=1.6e-06 Score=81.48 Aligned_cols=138 Identities=21% Similarity=0.174 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.++.. ++.-|++|||+|.+. ....+.||+.|++....+++|++|+.++.+.+.+++
T Consensus 114 vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~S 181 (598)
T PRK09111 114 VDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLS 181 (598)
T ss_pred HHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHh
Confidence 34677777776532 235799999999983 235688999998888888888888989999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE 186 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~ 186 (242)
|+. .++|..|+.++-...++..+.+.+. .. + ...++.|++.+.| +.+++.+++. +...+.
T Consensus 182 Rcq-~~~f~~l~~~el~~~L~~i~~kegi----------~i---~-~eAl~lIa~~a~G-dlr~al~~Ld--kli~~g-- 241 (598)
T PRK09111 182 RCQ-RFDLRRIEADVLAAHLSRIAAKEGV----------EV---E-DEALALIARAAEG-SVRDGLSLLD--QAIAHG-- 241 (598)
T ss_pred hee-EEEecCCCHHHHHHHHHHHHHHcCC----------CC---C-HHHHHHHHHHcCC-CHHHHHHHHH--HHHhhc--
Confidence 995 8999999999999999998876322 11 1 2344677888764 7777777776 333332
Q ss_pred CCCccHHHHHHHH
Q psy4165 187 DGVLTEAMVMSKV 199 (242)
Q Consensus 187 ~~~~~~~~~~~a~ 199 (242)
.+.+|.+++...+
T Consensus 242 ~g~It~e~V~~ll 254 (598)
T PRK09111 242 AGEVTAEAVRDML 254 (598)
T ss_pred CCCcCHHHHHHHh
Confidence 3457776666543
No 121
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=1.8e-06 Score=81.45 Aligned_cols=138 Identities=19% Similarity=0.230 Sum_probs=93.5
Q ss_pred HHHHHHHHHHH---hCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWAS---SSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~---~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++.+.+.+. ..++.-|++|||+|.+.. ...+.||+.|++.++.+++|++|+.+..|.+.+.+|
T Consensus 110 d~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~------------~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SR 177 (620)
T PRK14954 110 DDIRQLRENVRYGPQKGRYRVYIIDEVHMLST------------AAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASR 177 (620)
T ss_pred HHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH------------HHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh
Confidence 45566555542 122247999999999832 246789999988777778888888889999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhh---
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYA--- 184 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~--- 184 (242)
.. .++|.+|+.++-...++..+.+.+ +.. + ...++.++..+.| +.+++.+.+. +...++
T Consensus 178 c~-~vef~~l~~~ei~~~L~~i~~~eg----------i~I---~-~eal~~La~~s~G-dlr~al~eLe--KL~~y~~~~ 239 (620)
T PRK14954 178 CQ-RFNFKRIPLDEIQSQLQMICRAEG----------IQI---D-ADALQLIARKAQG-SMRDAQSILD--QVIAFSVGS 239 (620)
T ss_pred ce-EEecCCCCHHHHHHHHHHHHHHcC----------CCC---C-HHHHHHHHHHhCC-CHHHHHHHHH--HHHHhcccc
Confidence 85 999999999998888888776522 111 2 3344677877754 5556666555 344444
Q ss_pred hcCCCccHHHHHHH
Q psy4165 185 SEDGVLTEAMVMSK 198 (242)
Q Consensus 185 ~~~~~~~~~~~~~a 198 (242)
...+.|+.+++.+.
T Consensus 240 ~~~~~It~~~V~~l 253 (620)
T PRK14954 240 EAEKVIAYQGVAEL 253 (620)
T ss_pred ccCCccCHHHHHHH
Confidence 22446777666553
No 122
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.64 E-value=3.6e-06 Score=69.77 Aligned_cols=159 Identities=11% Similarity=0.115 Sum_probs=96.6
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
||+++++++ +.+++.+++.++.. .+... .. +.+|+|||+|.+.. .....+..++
T Consensus 58 La~ai~~~~~~~~~~~~~i~~~~~~~-----------~~~~~--~~-~~~liiDdi~~l~~---------~~~~~L~~~~ 114 (227)
T PRK08903 58 LLQALVADASYGGRNARYLDAASPLL-----------AFDFD--PE-AELYAVDDVERLDD---------AQQIALFNLF 114 (227)
T ss_pred HHHHHHHHHHhCCCcEEEEehHHhHH-----------HHhhc--cc-CCEEEEeChhhcCc---------hHHHHHHHHH
Confidence 677887764 56777777655421 01111 12 57999999998732 1223344444
Q ss_pred HHhccCCCCeEEEEecC-Ccc--cccHHHhccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 79 YRTGEQSDKFMLVLASN-TPQ--QFDWAVNDRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 79 ~~l~~~~~~v~vI~tTn-~~~--~ld~al~~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
..+... +..++|.+++ .+. .+.+.+.+|| ...+++++|+.+++..+++.+..+.+ +.++ .
T Consensus 115 ~~~~~~-~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~----------v~l~----~ 179 (227)
T PRK08903 115 NRVRAH-GQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG----------LQLA----D 179 (227)
T ss_pred HHHHHc-CCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC----------CCCC----H
Confidence 444332 3333444443 332 3557777787 46999999999999999998776532 2222 3
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
..++.|++..+ =+.+++.++++.....+. .....+|...+.+.+.
T Consensus 180 ~al~~L~~~~~-gn~~~l~~~l~~l~~~~~-~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 180 EVPDYLLTHFR-RDMPSLMALLDALDRYSL-EQKRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHHh
Confidence 34577888654 488888888874333222 3446888888887764
No 123
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=1.5e-06 Score=78.16 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHH---hCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWAS---SSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~---~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.+. ..++..|++|||+|.+.. ...+.||..+++.+...++|++|+.+..+-+++.+
T Consensus 109 id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~------------~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~s 176 (397)
T PRK14955 109 VDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI------------AAFNAFLKTLEEPPPHAIFIFATTELHKIPATIAS 176 (397)
T ss_pred HHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH------------HHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHH
Confidence 345666555553 122247999999999832 24567888887777777778788888999999998
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh-
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYAS- 185 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~- 185 (242)
|+. .++|++++.++-...++..+.+.+. . ++ ...++.++..+.| +.+.+.+.+. +...++.
T Consensus 177 R~~-~v~f~~l~~~ei~~~l~~~~~~~g~----------~---i~-~~al~~l~~~s~g-~lr~a~~~L~--kl~~~~~~ 238 (397)
T PRK14955 177 RCQ-RFNFKRIPLEEIQQQLQGICEAEGI----------S---VD-ADALQLIGRKAQG-SMRDAQSILD--QVIAFSVE 238 (397)
T ss_pred HHH-HhhcCCCCHHHHHHHHHHHHHHcCC----------C---CC-HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhccc
Confidence 886 8999999999988888888765221 1 22 3344667777653 5556666655 3334432
Q ss_pred --cCCCccHHHHHHH
Q psy4165 186 --EDGVLTEAMVMSK 198 (242)
Q Consensus 186 --~~~~~~~~~~~~a 198 (242)
....++.+++.+.
T Consensus 239 ~~~~~~It~~~v~~~ 253 (397)
T PRK14955 239 SEGEGSIRYDKVAEL 253 (397)
T ss_pred cCCCCccCHHHHHHH
Confidence 2346777766554
No 124
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.63 E-value=1.4e-06 Score=74.10 Aligned_cols=174 Identities=11% Similarity=0.092 Sum_probs=100.9
Q ss_pred ChHHHHHHhcCCcEEEEecCCcc------ccc-chH-HHHHHH-------------------HHHHHHhCCCcEEEEEec
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVA------PMG-SSG-VTAIHK-------------------VFDWASSSRKGLVLFIDE 53 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~------~~~-g~~-e~~l~~-------------------~f~~A~~~~~p~Il~iDe 53 (242)
++|+++|..+|.+++.++++.-. ..+ |.. ...+.. .+..|... +.+|+|||
T Consensus 36 ~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~--g~~lllDE 113 (262)
T TIGR02640 36 TLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVRE--GFTLVYDE 113 (262)
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHc--CCEEEEcc
Confidence 48999999999999999876422 111 111 111111 11223322 68999999
Q ss_pred ccccccccCCCccchHHHHHHHHHHHHh----cc---------CCCCeEEEEecCCc-----ccccHHHhcccccEEEeC
Q psy4165 54 ADAFLRKRSSETISESLRATLNAFLYRT----GE---------QSDKFMLVLASNTP-----QQFDWAVNDRLDEMVEFP 115 (242)
Q Consensus 54 iD~l~~~r~~~~~~~~~~~~l~~lL~~l----~~---------~~~~v~vI~tTn~~-----~~ld~al~~Rfd~~i~~~ 115 (242)
+|.+- ......+..+|.+- .+ ...++.||+|+|.. ..+++++..|| ..++++
T Consensus 114 i~r~~---------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~-~~i~i~ 183 (262)
T TIGR02640 114 FTRSK---------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRL-ITIFMD 183 (262)
T ss_pred hhhCC---------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhc-EEEECC
Confidence 99973 33344444444321 00 11245789999976 36799999999 589999
Q ss_pred CCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCC----CCCHHHHHHHHHHHHHHHhhhcCCCcc
Q psy4165 116 LPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE----GLSGREIAKLGVAWQASAYASEDGVLT 191 (242)
Q Consensus 116 ~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~----g~s~adi~~lv~~a~~~~~~~~~~~~~ 191 (242)
.|+.++-.+|++.+.. .. +-. -..+-.++..+. -..++ ++..+..++++........++
T Consensus 184 ~P~~~~e~~Il~~~~~---~~------------~~~-~~~iv~~~~~~R~~~~~~~~~-~r~~i~~~~~~~~~~~~~~~~ 246 (262)
T TIGR02640 184 YPDIDTETAILRAKTD---VA------------EDS-AATIVRLVREFRASGDEITSG-LRASLMIAEVATQQDIPVDVD 246 (262)
T ss_pred CCCHHHHHHHHHHhhC---CC------------HHH-HHHHHHHHHHHHhhCCccCCc-HHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999998752 11 000 001111211111 12333 555555444444444456778
Q ss_pred HHHHHHHHHHHH
Q psy4165 192 EAMVMSKVEDSI 203 (242)
Q Consensus 192 ~~~~~~a~~~~~ 203 (242)
.+++.+....++
T Consensus 247 ~~~~~~~~~~~~ 258 (262)
T TIGR02640 247 DEDFVDLCIDIL 258 (262)
T ss_pred cHHHHHHHHHHh
Confidence 888887776665
No 125
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.63 E-value=5.3e-07 Score=86.81 Aligned_cols=158 Identities=14% Similarity=0.146 Sum_probs=99.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccc------cchHH-----HHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPM------GSSGV-----TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISES 69 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~------~g~~e-----~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~ 69 (242)
.+|+++|..++.+|+.++++++... .|... ..-..+.+..+... .+||||||+|.+-+
T Consensus 503 ~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p-~sVlllDEieka~~---------- 571 (758)
T PRK11034 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHP-HAVLLLDEIEKAHP---------- 571 (758)
T ss_pred HHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCC-CcEEEeccHhhhhH----------
Confidence 3799999999999999998876431 12110 00112222333333 69999999999832
Q ss_pred HHHHHHHHHHHhccC-----------CCCeEEEEecCCc-------------------------ccccHHHhcccccEEE
Q psy4165 70 LRATLNAFLYRTGEQ-----------SDKFMLVLASNTP-------------------------QQFDWAVNDRLDEMVE 113 (242)
Q Consensus 70 ~~~~l~~lL~~l~~~-----------~~~v~vI~tTn~~-------------------------~~ld~al~~Rfd~~i~ 113 (242)
.+.+.||+.|++. -.++++|+|||.- ..+.|.|++|+|.+|.
T Consensus 572 --~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~ 649 (758)
T PRK11034 572 --DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIW 649 (758)
T ss_pred --HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEE
Confidence 2445555555411 1357899999822 2366888899999999
Q ss_pred eCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhC--CCCCHHHHHHHHH
Q psy4165 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT--EGLSGREIAKLGV 176 (242)
Q Consensus 114 ~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t--~g~s~adi~~lv~ 176 (242)
|++.+.++..+|+..++.++...... .++.+. ++ +..++.|++.. .+|-.+.|+.++.
T Consensus 650 f~~L~~~~l~~I~~~~l~~~~~~l~~---~~i~l~-~~-~~~~~~l~~~~~~~~~GAR~l~r~i~ 709 (758)
T PRK11034 650 FDHLSTDVIHQVVDKFIVELQAQLDQ---KGVSLE-VS-QEARDWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHH---CCCCce-EC-HHHHHHHHHhCCCCCCCCchHHHHHH
Confidence 99999999999999998764322111 111111 11 23446677652 2345677777775
No 126
>PRK08727 hypothetical protein; Validated
Probab=98.63 E-value=3.1e-06 Score=70.65 Aligned_cols=165 Identities=14% Similarity=0.102 Sum_probs=95.9
Q ss_pred hHHHHHHh---cCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHH---SGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e---~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
|++|++++ -|...++++..++ ...+.+.++.... ..+|+|||+|.+..... ....+-.++
T Consensus 57 L~~a~~~~~~~~~~~~~y~~~~~~-------~~~~~~~~~~l~~---~dlLiIDDi~~l~~~~~-------~~~~lf~l~ 119 (233)
T PRK08727 57 LALALCAAAEQAGRSSAYLPLQAA-------AGRLRDALEALEG---RSLVALDGLESIAGQRE-------DEVALFDFH 119 (233)
T ss_pred HHHHHHHHHHHcCCcEEEEeHHHh-------hhhHHHHHHHHhc---CCEEEEeCcccccCChH-------HHHHHHHHH
Confidence 56666554 3445555554332 2234444544432 57999999998864321 122333454
Q ss_pred HHhccCCCCeEEEEecCCcccc---cHHHhccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 79 YRTGEQSDKFMLVLASNTPQQF---DWAVNDRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 79 ~~l~~~~~~v~vI~tTn~~~~l---d~al~~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
...... +.-+++.+...|..+ ++++.+|| ...+++++|+.++|.+|++...... ++.++ +
T Consensus 120 n~~~~~-~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~----------~l~l~----~ 184 (233)
T PRK08727 120 NRARAA-GITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR----------GLALD----E 184 (233)
T ss_pred HHHHHc-CCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc----------CCCCC----H
Confidence 444222 222444455567766 68999997 6689999999999999999876542 22222 3
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
..++.|+++++ =+.+.+.+++......+... ...+|.+.+.+.+.
T Consensus 185 e~~~~La~~~~-rd~r~~l~~L~~l~~~~~~~-~~~it~~~~~~~l~ 229 (233)
T PRK08727 185 AAIDWLLTHGE-RELAGLVALLDRLDRESLAA-KRRVTVPFLRRVLE 229 (233)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHh
Confidence 34478888865 23333333354333323332 34788888877664
No 127
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.61 E-value=2.3e-06 Score=74.26 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=97.9
Q ss_pred hHHHHHHhcC-----CcEEEEecCCcccccchHHHHHHHHH-HHHHhC----CCcEEEEEecccccccccCCCccchHHH
Q psy4165 2 FAKKLAHHSG-----MDYAIMTGGDVAPMGSSGVTAIHKVF-DWASSS----RKGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 2 lA~aiA~e~~-----~~~~~v~~~~l~~~~g~~e~~l~~~f-~~A~~~----~~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
+++++++++. .+++.+++++-.. ...++..+ ..+... ..+.+|+|||+|.+.. .
T Consensus 54 ~~~~l~~~l~~~~~~~~~i~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------~-- 117 (319)
T PRK00440 54 AALALARELYGEDWRENFLELNASDERG-----IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------D-- 117 (319)
T ss_pred HHHHHHHHHcCCccccceEEeccccccc-----hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---------H--
Confidence 6788888763 3455555443211 11222222 222221 2257999999998832 1
Q ss_pred HHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 72 ATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 72 ~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
....|+..++.......+|.++|.+..+.+++.+|+. .++|++|+.++...+++.++.+.+. . ++
T Consensus 118 -~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~----------~---i~ 182 (319)
T PRK00440 118 -AQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGI----------E---IT 182 (319)
T ss_pred -HHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCC----------C---CC
Confidence 1234555555555556777788888899999999987 6999999999999999999876322 1 22
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
...++.+++.+. +|++.+.+..+.+.. ....+|.+++..++
T Consensus 183 -~~al~~l~~~~~----gd~r~~~~~l~~~~~--~~~~it~~~v~~~~ 223 (319)
T PRK00440 183 -DDALEAIYYVSE----GDMRKAINALQAAAA--TGKEVTEEAVYKIT 223 (319)
T ss_pred -HHHHHHHHHHcC----CCHHHHHHHHHHHHH--cCCCCCHHHHHHHh
Confidence 334577877754 455555543333322 23467777766654
No 128
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.60 E-value=1e-06 Score=85.18 Aligned_cols=156 Identities=18% Similarity=0.205 Sum_probs=101.1
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccc-------------cchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccc
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPM-------------GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS 67 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~-------------~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~ 67 (242)
.||+++|..++.+++.++++++... .|.. .-..+.+..+.. +.+||+|||+|.+-+
T Consensus 499 ~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~--~~~~l~~~~~~~-p~~VvllDEieka~~-------- 567 (731)
T TIGR02639 499 ELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFE--QGGLLTEAVRKH-PHCVLLLDEIEKAHP-------- 567 (731)
T ss_pred HHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccc--hhhHHHHHHHhC-CCeEEEEechhhcCH--------
Confidence 3799999999999999998776431 1211 112233333433 379999999998732
Q ss_pred hHHHHHHHHHHHHhccC-----------CCCeEEEEecCCcc-------------------------cccHHHhcccccE
Q psy4165 68 ESLRATLNAFLYRTGEQ-----------SDKFMLVLASNTPQ-------------------------QFDWAVNDRLDEM 111 (242)
Q Consensus 68 ~~~~~~l~~lL~~l~~~-----------~~~v~vI~tTn~~~-------------------------~ld~al~~Rfd~~ 111 (242)
.+.+.||+-|++. -.+.++|+|||... .+.|.|++|||.+
T Consensus 568 ----~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~V 643 (731)
T TIGR02639 568 ----DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAI 643 (731)
T ss_pred ----HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeE
Confidence 2445555555421 12478899998632 2578888999999
Q ss_pred EEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHh--CCCCCHHHHHHHHH
Q psy4165 112 VEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHV--TEGLSGREIAKLGV 176 (242)
Q Consensus 112 i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~--t~g~s~adi~~lv~ 176 (242)
|.|.+.+.++..+|++..+.++...... .++.+. ++ +..++.|++. ...|-.+.|+.++.
T Consensus 644 i~F~pLs~e~l~~Iv~~~L~~l~~~l~~---~~~~l~-i~-~~a~~~La~~~~~~~~GaR~l~r~i~ 705 (731)
T TIGR02639 644 IHFNPLSEEVLEKIVQKFVDELSKQLNE---KNIKLE-LT-DDAKKYLAEKGYDEEFGARPLARVIQ 705 (731)
T ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHHHh---CCCeEE-eC-HHHHHHHHHhCCCcccCchHHHHHHH
Confidence 9999999999999999999764221110 111111 11 2344667775 34466788888875
No 129
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=3.7e-06 Score=79.46 Aligned_cols=119 Identities=17% Similarity=0.169 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++.+...+... ++.-|++|||+|.+. ....+.||..|++.+...++|++|+.+..|-+.|++
T Consensus 103 vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~S 170 (614)
T PRK14971 103 VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS 170 (614)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHh
Confidence 45677777776533 123599999999983 234678999998877778888888888999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
|+. .++|.+++.++-...++..+.+.+. ..+ ...++.|+..+. -+.+++.+++.
T Consensus 171 Rc~-iv~f~~ls~~ei~~~L~~ia~~egi----------~i~----~~al~~La~~s~-gdlr~al~~Le 224 (614)
T PRK14971 171 RCQ-IFDFNRIQVADIVNHLQYVASKEGI----------TAE----PEALNVIAQKAD-GGMRDALSIFD 224 (614)
T ss_pred hhh-eeecCCCCHHHHHHHHHHHHHHcCC----------CCC----HHHHHHHHHHcC-CCHHHHHHHHH
Confidence 986 7999999999999999888876322 222 223477888874 35556655554
No 130
>PRK05642 DNA replication initiation factor; Validated
Probab=98.59 E-value=2.7e-06 Score=71.09 Aligned_cols=164 Identities=13% Similarity=0.112 Sum_probs=101.0
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
|++|+|+++ +..+++++..++... ...+.+..+. .-+|+|||++.+.++. .....+-.++
T Consensus 61 Ll~a~~~~~~~~~~~v~y~~~~~~~~~-------~~~~~~~~~~---~d~LiiDDi~~~~~~~-------~~~~~Lf~l~ 123 (234)
T PRK05642 61 LLQAACLRFEQRGEPAVYLPLAELLDR-------GPELLDNLEQ---YELVCLDDLDVIAGKA-------DWEEALFHLF 123 (234)
T ss_pred HHHHHHHHHHhCCCcEEEeeHHHHHhh-------hHHHHHhhhh---CCEEEEechhhhcCCh-------HHHHHHHHHH
Confidence 567777643 456666766655332 1223333332 2589999999885432 1222334444
Q ss_pred HHhccCCCCeEEEEecCCcccc---cHHHhccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 79 YRTGEQSDKFMLVLASNTPQQF---DWAVNDRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 79 ~~l~~~~~~v~vI~tTn~~~~l---d~al~~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
+.+. ..++.++|+++..|..+ .|.+++|| ...+.+.+|+.++|..+++...... ++.++ +
T Consensus 124 n~~~-~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~----------~~~l~----~ 188 (234)
T PRK05642 124 NRLR-DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRR----------GLHLT----D 188 (234)
T ss_pred HHHH-hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc----------CCCCC----H
Confidence 4432 23456777777666544 68888998 4678889999999999999665442 12222 3
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
..++.|+++.+ -+++.+..++......+.. ....+|...+.+.+
T Consensus 189 ev~~~L~~~~~-~d~r~l~~~l~~l~~~~l~-~~~~it~~~~~~~L 232 (234)
T PRK05642 189 EVGHFILTRGT-RSMSALFDLLERLDQASLQ-AQRKLTIPFLKETL 232 (234)
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH-cCCcCCHHHHHHHh
Confidence 44578888876 5888888888755433333 23568887777665
No 131
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=7e-06 Score=77.42 Aligned_cols=135 Identities=18% Similarity=0.200 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++.+.+... ...-||+|||+|.+.. ..++.||+.+++.....++|++|+.++.+.+.+.+|
T Consensus 103 d~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~------------~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR 170 (585)
T PRK14950 103 DDAREIIERVQFRPALARYKVYIIDEVHMLST------------AAFNALLKTLEEPPPHAIFILATTEVHKVPATILSR 170 (585)
T ss_pred HHHHHHHHHHhhCcccCCeEEEEEeChHhCCH------------HHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhc
Confidence 3455555444321 2357999999998831 346778888887777778888888889999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
+. .++|+.++..+...+++..+.+.+. . ++ ...+..++..+.| +.+++.+.+. +...+ ..
T Consensus 171 ~~-~i~f~~l~~~el~~~L~~~a~~egl----------~---i~-~eal~~La~~s~G-dlr~al~~Le--kL~~y--~~ 230 (585)
T PRK14950 171 CQ-RFDFHRHSVADMAAHLRKIAAAEGI----------N---LE-PGALEAIARAATG-SMRDAENLLQ--QLATT--YG 230 (585)
T ss_pred cc-eeeCCCCCHHHHHHHHHHHHHHcCC----------C---CC-HHHHHHHHHHcCC-CHHHHHHHHH--HHHHh--cC
Confidence 86 7899999999999999888765322 1 11 2345778888765 7777777776 22333 34
Q ss_pred CCccHHHHHH
Q psy4165 188 GVLTEAMVMS 197 (242)
Q Consensus 188 ~~~~~~~~~~ 197 (242)
+.++.+++.+
T Consensus 231 ~~It~e~V~~ 240 (585)
T PRK14950 231 GEISLSQVQS 240 (585)
T ss_pred CCCCHHHHHH
Confidence 4677766544
No 132
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=7.5e-07 Score=84.87 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=89.8
Q ss_pred cCCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCC
Q psy4165 10 SGMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSD 86 (242)
Q Consensus 10 ~~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~ 86 (242)
-+..++.++.+.+.. +| |+.|.+++.+.++.++.. +.|||||||+.+.+.....++......++.-.| -.+
T Consensus 225 ~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-----ARG 298 (786)
T COG0542 225 KDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-----ARG 298 (786)
T ss_pred cCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCC-CeEEEEechhhhcCCCcccccccchhhhhHHHH-----hcC
Confidence 456789999888874 66 999999999999999888 999999999999987655331122222332222 255
Q ss_pred CeEEEEecCC-----cccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhcc
Q psy4165 87 KFMLVLASNT-----PQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKF 133 (242)
Q Consensus 87 ~v~vI~tTn~-----~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~ 133 (242)
.+-+||+|.. .-.=|+||-+||. .|.+.-|+.++-..||+..-.++
T Consensus 299 eL~~IGATT~~EYRk~iEKD~AL~RRFQ-~V~V~EPs~e~ti~ILrGlk~~y 349 (786)
T COG0542 299 ELRCIGATTLDEYRKYIEKDAALERRFQ-KVLVDEPSVEDTIAILRGLKERY 349 (786)
T ss_pred CeEEEEeccHHHHHHHhhhchHHHhcCc-eeeCCCCCHHHHHHHHHHHHHHH
Confidence 6778887743 3356999999998 89999999999999999877664
No 133
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.47 E-value=4.1e-06 Score=76.90 Aligned_cols=127 Identities=25% Similarity=0.321 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHH
Q psy4165 28 SGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAV 104 (242)
Q Consensus 28 ~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al 104 (242)
.+...++++-+.+.-. .+.-|.+|||++-+ ....+|.||+.+++.+..|++|.+|..++.+++-+
T Consensus 99 ~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML------------S~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 99 TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML------------SKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred cChHHHHHHHHHhccCCccccceEEEEecHHhh------------hHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 4556788888877632 12579999999887 46688999999999999999999999999999999
Q ss_pred hcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q psy4165 105 NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYA 184 (242)
Q Consensus 105 ~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~ 184 (242)
++|+. .+.|..-+.++....|+..+.+-+. ..+ +..|.-+|+..+| |.+|...++. ++..++
T Consensus 167 lSRcq-~f~fkri~~~~I~~~L~~i~~~E~I----------~~e----~~aL~~ia~~a~G-s~RDalslLD--q~i~~~ 228 (515)
T COG2812 167 LSRCQ-RFDFKRLDLEEIAKHLAAILDKEGI----------NIE----EDALSLIARAAEG-SLRDALSLLD--QAIAFG 228 (515)
T ss_pred hhccc-cccccCCCHHHHHHHHHHHHHhcCC----------ccC----HHHHHHHHHHcCC-ChhhHHHHHH--HHHHcc
Confidence 99986 7889999999999999999876322 222 3445778888875 7789988888 444444
No 134
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=5.5e-06 Score=72.62 Aligned_cols=87 Identities=22% Similarity=0.313 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++.+.+.. .++.-|++||++|.+. ....|.||+.+++.++++++|.+|+.++.|.|.+++|
T Consensus 89 d~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR 156 (328)
T PRK05707 89 DQVRELVSFVVQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR 156 (328)
T ss_pred HHHHHHHHHHhhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh
Confidence 345555444432 2235788999999993 3467899999998888999999999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHH
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l 130 (242)
+. .+.|++|+.++-.+.+....
T Consensus 157 c~-~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 157 CQ-QQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred ce-eeeCCCcCHHHHHHHHHHhc
Confidence 97 69999999998887777643
No 135
>PRK06620 hypothetical protein; Validated
Probab=98.43 E-value=1.3e-05 Score=66.01 Aligned_cols=124 Identities=12% Similarity=0.115 Sum_probs=80.9
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccc--ccHHHhcccc--cEEEeCCCCHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQ--FDWAVNDRLD--EMVEFPLPTLNE 121 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~--ld~al~~Rfd--~~i~~~~P~~~~ 121 (242)
..+|+|||||.+- + ..+-.+++.+.+ .++.++|+++..|.. + |+|++|+. ..+++.+|+.+.
T Consensus 86 ~d~lliDdi~~~~---------~---~~lf~l~N~~~e-~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~ 151 (214)
T PRK06620 86 YNAFIIEDIENWQ---------E---PALLHIFNIINE-KQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDEL 151 (214)
T ss_pred CCEEEEeccccch---------H---HHHHHHHHHHHh-cCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHH
Confidence 4689999999541 1 133344444433 345677777765554 6 78888885 369999999999
Q ss_pred HHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 122 RERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 122 R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
+..+++......+ +.++ +..++.|+++++ =+.+.+.+++....+.+.. ....+|.+.+.+.+
T Consensus 152 ~~~~l~k~~~~~~----------l~l~----~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~~~-~~~~it~~~~~~~l 213 (214)
T PRK06620 152 IKILIFKHFSISS----------VTIS----RQIIDFLLVNLP-REYSKIIEILENINYFALI-SKRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHHHcC----------CCCC----HHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHh
Confidence 9999999887522 2222 344578888876 4777777777643322222 33468887777654
No 136
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.38 E-value=7.7e-06 Score=67.69 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=70.2
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccc---ccHHHhccccc--EEEeCCCCHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQ---FDWAVNDRLDE--MVEFPLPTLN 120 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~---ld~al~~Rfd~--~i~~~~P~~~ 120 (242)
.-+|+|||+|.+.++ ......+-.+++.+... ++-+||.+-..|.. +++.|.+||.. .+++.+|+.+
T Consensus 98 ~DlL~iDDi~~l~~~-------~~~q~~lf~l~n~~~~~-~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGK-------QRTQEELFHLFNRLIES-GKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDE 169 (219)
T ss_dssp SSEEEEETGGGGTTH-------HHHHHHHHHHHHHHHHT-TSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HH
T ss_pred CCEEEEecchhhcCc-------hHHHHHHHHHHHHHHhh-CCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHH
Confidence 479999999999642 22344555555555333 34466665555554 57788888754 8999999999
Q ss_pred HHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHH
Q psy4165 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVA 177 (242)
Q Consensus 121 ~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~ 177 (242)
.|.+|++......+. .++ +..++.|+++.+ -+.++|..+++.
T Consensus 170 ~r~~il~~~a~~~~~----------~l~----~~v~~~l~~~~~-~~~r~L~~~l~~ 211 (219)
T PF00308_consen 170 DRRRILQKKAKERGI----------ELP----EEVIEYLARRFR-RDVRELEGALNR 211 (219)
T ss_dssp HHHHHHHHHHHHTT------------S-----HHHHHHHHHHTT-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC----------CCc----HHHHHHHHHhhc-CCHHHHHHHHHH
Confidence 999999999986432 222 344578999976 588888888873
No 137
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.32 E-value=1.2e-05 Score=78.89 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=97.2
Q ss_pred ChHHHHHHhc---CCcEEEEecCCccccc------chHHH-----HHHHHHHHHHhCCCcEEEEEecccccccccCCCcc
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMG------SSGVT-----AIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI 66 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~------g~~e~-----~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~ 66 (242)
.+|++||..+ +.+++.++++.+.... |.... .-..+....+... .+||||||||.+-
T Consensus 610 ~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p-~~vlllDeieka~-------- 680 (852)
T TIGR03346 610 ELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKP-YSVVLFDEVEKAH-------- 680 (852)
T ss_pred HHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCC-CcEEEEeccccCC--------
Confidence 3789999876 4689999887764311 10000 0122333344333 5899999999872
Q ss_pred chHHHHHHHHHHHHhccC-----------CCCeEEEEecCCccc-------------------------ccHHHhccccc
Q psy4165 67 SESLRATLNAFLYRTGEQ-----------SDKFMLVLASNTPQQ-------------------------FDWAVNDRLDE 110 (242)
Q Consensus 67 ~~~~~~~l~~lL~~l~~~-----------~~~v~vI~tTn~~~~-------------------------ld~al~~Rfd~ 110 (242)
. .+.+.||+-+++. -.+.+||+|||.... +.|.|+.|+|.
T Consensus 681 -~---~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~ 756 (852)
T TIGR03346 681 -P---DVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDE 756 (852)
T ss_pred -H---HHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCe
Confidence 2 2344555544311 134788999997221 34667789999
Q ss_pred EEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhC--CCCCHHHHHHHHH
Q psy4165 111 MVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT--EGLSGREIAKLGV 176 (242)
Q Consensus 111 ~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t--~g~s~adi~~lv~ 176 (242)
++.|.+++.+...+|+...+..+...... .++.. .++ +..++.|++.. ..+..+.|++++.
T Consensus 757 IivF~PL~~e~l~~I~~l~L~~l~~~l~~---~~~~l-~i~-~~a~~~L~~~~~~~~~gaR~L~~~i~ 819 (852)
T TIGR03346 757 IVVFHPLGREQIARIVEIQLGRLRKRLAE---RKITL-ELS-DAALDFLAEAGYDPVYGARPLKRAIQ 819 (852)
T ss_pred EEecCCcCHHHHHHHHHHHHHHHHHHHHH---CCCee-cCC-HHHHHHHHHhCCCCCCCchhHHHHHH
Confidence 99999999999999999998754321111 11111 122 33446777762 2466788888886
No 138
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.31 E-value=3e-06 Score=73.64 Aligned_cols=120 Identities=15% Similarity=0.108 Sum_probs=84.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccc---cchHHHH----------HHHHHHHHHhCCCcEEEEEecccccccccCCCccc
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPM---GSSGVTA----------IHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS 67 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~---~g~~e~~----------l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~ 67 (242)
++|+.+|..+|.+++.++++...+. .|...-. ....+..|... |++|++||+|..-
T Consensus 79 tla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~--g~illlDEin~a~--------- 147 (327)
T TIGR01650 79 THIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQH--NVALCFDEYDAGR--------- 147 (327)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhC--CeEEEechhhccC---------
Confidence 3799999999999999987765542 2432111 11234445433 7999999999872
Q ss_pred hHHHHHHHHHHHH---h--cc------CCCCeEEEEecCCcc------------cccHHHhcccccEEEeCCCCHHHHHH
Q psy4165 68 ESLRATLNAFLYR---T--GE------QSDKFMLVLASNTPQ------------QFDWAVNDRLDEMVEFPLPTLNERER 124 (242)
Q Consensus 68 ~~~~~~l~~lL~~---l--~~------~~~~v~vI~tTn~~~------------~ld~al~~Rfd~~i~~~~P~~~~R~~ 124 (242)
......++.+|.. + .+ ....+.||+|+|... .+++|++.||-..+.+++|+.++-.+
T Consensus 148 p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~ 227 (327)
T TIGR01650 148 PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAA 227 (327)
T ss_pred HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHH
Confidence 3345566667652 1 11 223577899999865 46899999998888999999999999
Q ss_pred HHHHHHh
Q psy4165 125 LVRLYFD 131 (242)
Q Consensus 125 Il~~~l~ 131 (242)
|+.....
T Consensus 228 Il~~~~~ 234 (327)
T TIGR01650 228 IVLAKAK 234 (327)
T ss_pred HHHhhcc
Confidence 9987654
No 139
>KOG0989|consensus
Probab=98.30 E-value=5.1e-06 Score=70.82 Aligned_cols=150 Identities=13% Similarity=0.071 Sum_probs=98.3
Q ss_pred hHHHHHHhcCCc------EEEEecCCccccc--chHHHHHHHHHHHHHh-----CCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHSGMD------YAIMTGGDVAPMG--SSGVTAIHKVFDWASS-----SRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~~~~------~~~v~~~~l~~~~--g~~e~~l~~~f~~A~~-----~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
.|+|+|.+++++ +..++.++-.+.. .+..++..++-..-.. +.++-||+|||+|++.
T Consensus 73 talafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt---------- 142 (346)
T KOG0989|consen 73 TALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT---------- 142 (346)
T ss_pred HHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh----------
Confidence 478888888872 3344555544321 2322333332222211 1112799999999994
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccC
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVA 148 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~ 148 (242)
....+.|..-|+.++..+.+|..||+++.|+..+.+|.. ++.|++...+.....|+....+-
T Consensus 143 --sdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~-KfrFk~L~d~~iv~rL~~Ia~~E--------------- 204 (346)
T KOG0989|consen 143 --SDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ-KFRFKKLKDEDIVDRLEKIASKE--------------- 204 (346)
T ss_pred --HHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH-HhcCCCcchHHHHHHHHHHHHHh---------------
Confidence 234566777788888889999999999999999999997 78888888888888888877652
Q ss_pred CCCh-hHhHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q psy4165 149 PFDY-TSLCSKIAHVTEGLSGREIAKLGVAWQASAY 183 (242)
Q Consensus 149 ~~d~-~~~l~~la~~t~g~s~adi~~lv~~a~~~~~ 183 (242)
++++ +..++.|++. |++||+..+...+....
T Consensus 205 ~v~~d~~al~~I~~~----S~GdLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 205 GVDIDDDALKLIAKI----SDGDLRRAITTLQSLSL 236 (346)
T ss_pred CCCCCHHHHHHHHHH----cCCcHHHHHHHHHHhhc
Confidence 2222 2334666666 66788887765444443
No 140
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.28 E-value=2e-05 Score=74.37 Aligned_cols=190 Identities=17% Similarity=0.081 Sum_probs=111.0
Q ss_pred ChHHHHHHhcCC--cEEEEecCCcccc-cchHHHHHHHHHHHHH---------hCCCcEEEEEecccccccccCCCccch
Q psy4165 1 MFAKKLAHHSGM--DYAIMTGGDVAPM-GSSGVTAIHKVFDWAS---------SSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 1 llA~aiA~e~~~--~~~~v~~~~l~~~-~g~~e~~l~~~f~~A~---------~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
++|++++..++. ||+.+..+..... .|.. .+.+.+.... ... ..+||+||++.+-+
T Consensus 31 ~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~-~GvL~lDEi~rl~~--------- 98 (589)
T TIGR02031 31 ALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAP-RGVLYVDMANLLDD--------- 98 (589)
T ss_pred HHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCC-CCcEeccchhhCCH---------
Confidence 478999987754 6888875322222 2321 1111111100 011 46999999999932
Q ss_pred HHHHHHHHHHHHhccC-------------CCCeEEEEecCCcc---cccHHHhcccccEEEeCC-CCHHHHHHHHHHHHh
Q psy4165 69 SLRATLNAFLYRTGEQ-------------SDKFMLVLASNTPQ---QFDWAVNDRLDEMVEFPL-PTLNERERLVRLYFD 131 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~-------------~~~v~vI~tTn~~~---~ld~al~~Rfd~~i~~~~-P~~~~R~~Il~~~l~ 131 (242)
.+.+.|+..|++. ...+.||+|+|..+ .++++++.||+.++.+.. |..++|.+|++.++.
T Consensus 99 ---~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~ 175 (589)
T TIGR02031 99 ---GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERC 175 (589)
T ss_pred ---HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHH
Confidence 2334444444321 24578899988875 799999999999888874 577889999998763
Q ss_pred cccc----chhhhc----ccccccCCCChh-HhHHHHHHhC--CCCC-HHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 132 KFVL----QPAAQG----KRRLKVAPFDYT-SLCSKIAHVT--EGLS-GREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 132 ~~~~----~~~~~~----~~~~~~~~~d~~-~~l~~la~~t--~g~s-~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
.... ...... ...-.+..+.++ ..+..++..+ -|.+ .+--..+++.|++.+.-..+..++.+|+..++
T Consensus 176 ~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~ 255 (589)
T TIGR02031 176 NEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTEVTEEDLKLAV 255 (589)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 2110 000000 000011222221 1223333332 2444 44444667777888888888899999999999
Q ss_pred HHHHHh
Q psy4165 200 EDSIRA 205 (242)
Q Consensus 200 ~~~~~~ 205 (242)
.-+...
T Consensus 256 ~lvl~h 261 (589)
T TIGR02031 256 ELVLLP 261 (589)
T ss_pred HHHhhh
Confidence 888744
No 141
>PRK09087 hypothetical protein; Validated
Probab=98.28 E-value=6.2e-05 Score=62.58 Aligned_cols=129 Identities=15% Similarity=0.083 Sum_probs=82.0
Q ss_pred EEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc---cHHHhcccc--cEEEeCCCCHHH
Q psy4165 47 LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF---DWAVNDRLD--EMVEFPLPTLNE 121 (242)
Q Consensus 47 ~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l---d~al~~Rfd--~~i~~~~P~~~~ 121 (242)
.+|+|||+|.+.. + .. .+-.+++.+.+ .++.+||+++..|..+ .+.+++||. ..+++.+|+.+.
T Consensus 89 ~~l~iDDi~~~~~-----~-~~----~lf~l~n~~~~-~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~ 157 (226)
T PRK09087 89 GPVLIEDIDAGGF-----D-ET----GLFHLINSVRQ-AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDAL 157 (226)
T ss_pred CeEEEECCCCCCC-----C-HH----HHHHHHHHHHh-CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHH
Confidence 4788899997621 1 11 23333333322 3455777666555533 677888984 799999999999
Q ss_pred HHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 122 RERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 122 R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
|.+|++..+...+ +.++ +..++.|+++.+ =+.+.+..+++.....+.. ....+|...+.+.+..
T Consensus 158 ~~~iL~~~~~~~~----------~~l~----~ev~~~La~~~~-r~~~~l~~~l~~L~~~~~~-~~~~it~~~~~~~l~~ 221 (226)
T PRK09087 158 LSQVIFKLFADRQ----------LYVD----PHVVYYLVSRME-RSLFAAQTIVDRLDRLALE-RKSRITRALAAEVLNE 221 (226)
T ss_pred HHHHHHHHHHHcC----------CCCC----HHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHh
Confidence 9999999997632 2222 334578998876 3555555555543333333 2356898888888865
Q ss_pred H
Q psy4165 202 S 202 (242)
Q Consensus 202 ~ 202 (242)
.
T Consensus 222 ~ 222 (226)
T PRK09087 222 M 222 (226)
T ss_pred h
Confidence 4
No 142
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.26 E-value=5e-05 Score=63.30 Aligned_cols=149 Identities=18% Similarity=0.271 Sum_probs=102.2
Q ss_pred hHHHHHHh---cCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHH---SGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e---~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
++||+.++ -|+.++.|...++ ..+-.+++..+....+-|||+||+- |.. .+...+.+..+|
T Consensus 68 lVkall~~y~~~GLRlIev~k~~L--------~~l~~l~~~l~~~~~kFIlf~DDLs--Fe~------~d~~yk~LKs~L 131 (249)
T PF05673_consen 68 LVKALLNEYADQGLRLIEVSKEDL--------GDLPELLDLLRDRPYKFILFCDDLS--FEE------GDTEYKALKSVL 131 (249)
T ss_pred HHHHHHHHHhhcCceEEEECHHHh--------ccHHHHHHHHhcCCCCEEEEecCCC--CCC------CcHHHHHHHHHh
Confidence 67788875 4567888887666 4567777777755447999999853 221 223345556665
Q ss_pred HH-hccCCCCeEEEEecCCcccccHH-----------------------HhcccccEEEeCCCCHHHHHHHHHHHHhccc
Q psy4165 79 YR-TGEQSDKFMLVLASNTPQQFDWA-----------------------VNDRLDEMVEFPLPTLNERERLVRLYFDKFV 134 (242)
Q Consensus 79 ~~-l~~~~~~v~vI~tTn~~~~ld~a-----------------------l~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~ 134 (242)
.. +...+.+|++.+|+|+-..++.. |..||...|.|.+|+.++-.+|++.++.+.+
T Consensus 132 eGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g 211 (249)
T PF05673_consen 132 EGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYG 211 (249)
T ss_pred cCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcC
Confidence 43 45678889999999976555432 2269999999999999999999999998754
Q ss_pred cchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 135 LQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 135 ~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
+. .+.-++......-|..-.|.||+--+..+.
T Consensus 212 ~~----------~~~e~l~~~Al~wa~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 212 LE----------LDEEELRQEALQWALRRGGRSGRTARQFID 243 (249)
T ss_pred CC----------CCHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33 332222222234555666889988887775
No 143
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.26 E-value=1.2e-05 Score=60.59 Aligned_cols=105 Identities=26% Similarity=0.404 Sum_probs=66.7
Q ss_pred hHHHHHHhc---CCcEEEEecCCccccc-chHHHH---HHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMG-SSGVTA---IHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATL 74 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~-g~~e~~---l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l 74 (242)
+++.+++.+ +.+++.+++....... ...... ....+....... +.+|++||++.+.. .....+
T Consensus 35 l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lilDe~~~~~~---------~~~~~~ 104 (151)
T cd00009 35 LARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAK-PGVLFIDEIDSLSR---------GAQNAL 104 (151)
T ss_pred HHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCC-CeEEEEeChhhhhH---------HHHHHH
Confidence 688889888 8999999988775432 111111 112223333333 89999999998721 112222
Q ss_pred HHHHHHhcc---CCCCeEEEEecCCcc--cccHHHhcccccEEEeCC
Q psy4165 75 NAFLYRTGE---QSDKFMLVLASNTPQ--QFDWAVNDRLDEMVEFPL 116 (242)
Q Consensus 75 ~~lL~~l~~---~~~~v~vI~tTn~~~--~ld~al~~Rfd~~i~~~~ 116 (242)
..++..+.. ...++.+|++||... .+++.+.+||+..+++++
T Consensus 105 ~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 105 LRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred HHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecCC
Confidence 333333322 146788999998887 788999999998888763
No 144
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.25 E-value=1.2e-05 Score=70.55 Aligned_cols=151 Identities=15% Similarity=0.042 Sum_probs=95.1
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHH----h--c----cCCCCeEEEEecCCcc-cccHHHhcccccEEEe
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYR----T--G----EQSDKFMLVLASNTPQ-QFDWAVNDRLDEMVEF 114 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~----l--~----~~~~~v~vI~tTn~~~-~ld~al~~Rfd~~i~~ 114 (242)
+.+||+||++.+- ......+.++|.. + + ..+.++++|+|+|..+ .++++++.||..++.+
T Consensus 132 ~GvL~lDEi~~L~---------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l 202 (337)
T TIGR02030 132 RGILYIDEVNLLE---------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEI 202 (337)
T ss_pred CCEEEecChHhCC---------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEEC
Confidence 5799999999983 2233333333321 0 0 1234688888888655 6999999999999999
Q ss_pred CCCCH-HHHHHHHHHHHhcc--ccchh--hh------cc----cccccCCCChh-H---hHHHHHHhCCCCCHHHHHHHH
Q psy4165 115 PLPTL-NERERLVRLYFDKF--VLQPA--AQ------GK----RRLKVAPFDYT-S---LCSKIAHVTEGLSGREIAKLG 175 (242)
Q Consensus 115 ~~P~~-~~R~~Il~~~l~~~--~~~~~--~~------~~----~~~~~~~~d~~-~---~l~~la~~t~g~s~adi~~lv 175 (242)
+.|.. ++|.+|++...... +.... .+ .+ ..-.+..+.++ . -+-.++..+..-|++--..++
T Consensus 203 ~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~ 282 (337)
T TIGR02030 203 RTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLN 282 (337)
T ss_pred CCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHH
Confidence 99976 99999998854321 00000 00 00 00001222221 1 234455555544666666788
Q ss_pred HHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 176 VAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+.|++.+.-.++..++.+|+..+..-++.-
T Consensus 283 raArA~Aal~GR~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 283 RAAKALAAFEGRTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 888888888888999999999988777644
No 145
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.23 E-value=8.4e-05 Score=62.94 Aligned_cols=137 Identities=15% Similarity=0.174 Sum_probs=89.0
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcc---cc----cHHHhcccccEEEeCCC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQ---QF----DWAVNDRLDEMVEFPLP 117 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~---~l----d~al~~Rfd~~i~~~~P 117 (242)
++.+|+|||+|.+.. .....+..+..........+.|+. |..++ .+ ...+.+|+...+++++.
T Consensus 123 ~~~vliiDe~~~l~~---------~~~~~l~~l~~~~~~~~~~~~vvl-~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 123 KRALLVVDEAQNLTP---------ELLEELRMLSNFQTDNAKLLQIFL-VGQPEFRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred CCeEEEEECcccCCH---------HHHHHHHHHhCcccCCCCeEEEEE-cCCHHHHHHHcCchhHHHHhheeeeeeCCCC
Confidence 379999999999832 122233333222111222222222 23332 22 12345788889999999
Q ss_pred CHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q psy4165 118 TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMS 197 (242)
Q Consensus 118 ~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~ 197 (242)
+.++-.+++...+...+... ...++ +..++.|++.|.|.. +.|..+|..+...+...+...++.++++.
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~---------~~~~~-~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~~~i~~~~v~~ 261 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRD---------APVFS-EGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEKREIGGEEVRE 261 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCC---------CCCcC-HHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 99999999999887532110 01122 356688999999985 56999999877777777888999999999
Q ss_pred HHHHH
Q psy4165 198 KVEDS 202 (242)
Q Consensus 198 a~~~~ 202 (242)
++...
T Consensus 262 ~~~~~ 266 (269)
T TIGR03015 262 VIAEI 266 (269)
T ss_pred HHHHh
Confidence 98764
No 146
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.21 E-value=2e-05 Score=77.28 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=95.5
Q ss_pred hHHHHHHhc---CCcEEEEecCCccc-------------ccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAP-------------MGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET 65 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~-------------~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~ 65 (242)
||+++|..+ +..++.++++++.. ++|..+. ..+....+.. +.+||+|||||..-
T Consensus 612 lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~-p~svvllDEieka~------- 681 (852)
T TIGR03345 612 TALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRK-PYSVVLLDEVEKAH------- 681 (852)
T ss_pred HHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCccccccc--chHHHHHHhC-CCcEEEEechhhcC-------
Confidence 789999987 45788888766532 1122211 1122334444 37999999999762
Q ss_pred cchHHHHHHHHHHHHhccCC-----------CCeEEEEecCCcc-----------------------------cccHHHh
Q psy4165 66 ISESLRATLNAFLYRTGEQS-----------DKFMLVLASNTPQ-----------------------------QFDWAVN 105 (242)
Q Consensus 66 ~~~~~~~~l~~lL~~l~~~~-----------~~v~vI~tTn~~~-----------------------------~ld~al~ 105 (242)
. .+.+.|++-++... .+.++|+|||... .+.|+|+
T Consensus 682 --~---~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfl 756 (852)
T TIGR03345 682 --P---DVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFL 756 (852)
T ss_pred --H---HHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHh
Confidence 2 23444554453221 3578999988521 2567788
Q ss_pred cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCC--CCHHHHHHHHH
Q psy4165 106 DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEG--LSGREIAKLGV 176 (242)
Q Consensus 106 ~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g--~s~adi~~lv~ 176 (242)
+|++ .|.|.+.+.++..+|+...+.++....... .++.+ .++ +..++.|++...+ |-++.|++++.
T Consensus 757 nRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~--~gi~l-~i~-d~a~~~La~~g~~~~~GAR~L~r~Ie 824 (852)
T TIGR03345 757 GRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKEN--HGAEL-VYS-EALVEHIVARCTEVESGARNIDAILN 824 (852)
T ss_pred ccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHh--cCceE-EEC-HHHHHHHHHHcCCCCCChHHHHHHHH
Confidence 9998 899999999999999999987642211100 01111 122 3345778888533 45788888885
No 147
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.20 E-value=4.1e-05 Score=72.87 Aligned_cols=147 Identities=19% Similarity=0.180 Sum_probs=90.8
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhcc-------------CCCCeEEEEecCCc-ccccHHHhcccccE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGE-------------QSDKFMLVLASNTP-QQFDWAVNDRLDEM 111 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~-------------~~~~v~vI~tTn~~-~~ld~al~~Rfd~~ 111 (242)
..||||||++.+-. .+.+.||..|+. ...++.+|+|+|.. ..+.++|+.||+..
T Consensus 127 ~GiL~lDEi~~l~~------------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~ 194 (633)
T TIGR02442 127 RGILYIDEVNLLDD------------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLC 194 (633)
T ss_pred CCeEEeChhhhCCH------------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceE
Confidence 46999999999932 234445554431 12458999999854 36889999999999
Q ss_pred EEeCCC-CHHHHHHHHHHHHhccccchh-----------hhcc----cccccCCCCh-hHhHHHHHHhC--CCC-CHHHH
Q psy4165 112 VEFPLP-TLNERERLVRLYFDKFVLQPA-----------AQGK----RRLKVAPFDY-TSLCSKIAHVT--EGL-SGREI 171 (242)
Q Consensus 112 i~~~~P-~~~~R~~Il~~~l~~~~~~~~-----------~~~~----~~~~~~~~d~-~~~l~~la~~t--~g~-s~adi 171 (242)
|.++.| +.++|.+|++..+..- ..+. .... .+.....+.+ +..++.++..+ -|. +.+-.
T Consensus 195 i~v~~~~~~~~~~~il~~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~ 273 (633)
T TIGR02442 195 VDVAAPRDPEERVEIIRRRLAFD-ADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRAD 273 (633)
T ss_pred EEccCCCchHHHHHHHHHHHhhc-cCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHH
Confidence 999988 4688889987654310 0000 0000 0000111222 11223344333 244 34444
Q ss_pred HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 172 AKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 172 ~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
..+++.|++.+.-..+..++.+|+..|+.-++..
T Consensus 274 i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~h 307 (633)
T TIGR02442 274 IVMARAARALAALDGRRRVTAEDVREAAELVLPH 307 (633)
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhhh
Confidence 5677777777777788899999999999888754
No 148
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.16 E-value=6e-05 Score=70.03 Aligned_cols=148 Identities=16% Similarity=0.099 Sum_probs=93.0
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHH--h--c------cCCCCeEEEEecCCcc-------------cccH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYR--T--G------EQSDKFMLVLASNTPQ-------------QFDW 102 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~--l--~------~~~~~v~vI~tTn~~~-------------~ld~ 102 (242)
..+++|||+|.+- ...+..+.+.+.+ + . ..+.+..||+|+|... .|++
T Consensus 301 ~Gil~iDEi~~l~---------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~ 371 (509)
T smart00350 301 NGVCCIDEFDKMD---------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPA 371 (509)
T ss_pred CCEEEEechhhCC---------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCCh
Confidence 5799999999983 2233333333321 0 0 1234678999999763 5999
Q ss_pred HHhcccccEEEe-CCCCHHHHHHHHHHHHhccccc-h--hhhcc----------------c--ccccCCCChhHhHHH--
Q psy4165 103 AVNDRLDEMVEF-PLPTLNERERLVRLYFDKFVLQ-P--AAQGK----------------R--RLKVAPFDYTSLCSK-- 158 (242)
Q Consensus 103 al~~Rfd~~i~~-~~P~~~~R~~Il~~~l~~~~~~-~--~~~~~----------------~--~~~~~~~d~~~~l~~-- 158 (242)
++++|||..+.+ ..|+.+...+|.++.+...... + ..... . ...+++--. ..+..
T Consensus 372 ~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~-~~i~~~y 450 (509)
T smart00350 372 PILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAA-EKLVKAY 450 (509)
T ss_pred HHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHH-HHHHHHH
Confidence 999999987665 6899999999999876432100 0 00000 0 001111000 00111
Q ss_pred HHHh----------CCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 159 IAHV----------TEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 159 la~~----------t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
+..+ .-+.|++.+..+++-|+|.|....+..++.+|+..|++-+.
T Consensus 451 ~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 451 VDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred HHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 1112 12569999999999888888888889999999999987653
No 149
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.14 E-value=8.7e-06 Score=71.44 Aligned_cols=121 Identities=15% Similarity=0.157 Sum_probs=76.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc---ccchHHHHH----HHHHHHHHhC-CCc--EEEEEecccccccccCCCccchHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP---MGSSGVTAI----HKVFDWASSS-RKG--LVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~---~~g~~e~~l----~~~f~~A~~~-~~p--~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
+||+++|..+|.+|+.+.+..-.. ..|...-.. ...|.....- -.. +|+|+|||+..- ...
T Consensus 58 ~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~---------p~~ 128 (329)
T COG0714 58 LLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAP---------PEV 128 (329)
T ss_pred HHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCC---------HHH
Confidence 589999999999999999875543 123221111 1111111100 001 399999999873 234
Q ss_pred HHHHHHHHHHh----ccCC-----CCeEEEEecC-----CcccccHHHhcccccEEEeCCC-CHHHHHHHHHHHH
Q psy4165 71 RATLNAFLYRT----GEQS-----DKFMLVLASN-----TPQQFDWAVNDRLDEMVEFPLP-TLNERERLVRLYF 130 (242)
Q Consensus 71 ~~~l~~lL~~l----~~~~-----~~v~vI~tTn-----~~~~ld~al~~Rfd~~i~~~~P-~~~~R~~Il~~~l 130 (242)
...+.+.|.+- .... .+.+||+|+| ....+++|+++||-..+++++| ..++...++....
T Consensus 129 q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 129 QNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred HHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 44444444442 1223 5678888889 7778999999999889999999 5555555555554
No 150
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.14 E-value=0.00016 Score=68.58 Aligned_cols=99 Identities=20% Similarity=0.211 Sum_probs=62.2
Q ss_pred CeEEEE-ecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCC
Q psy4165 87 KFMLVL-ASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEG 165 (242)
Q Consensus 87 ~v~vI~-tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g 165 (242)
.+++|+ ||+.++.++++|++||. .++|++++.++...|++.++.+.+. . ++ +..++.|+..+
T Consensus 323 ~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~~v----------~---ls-~eal~~L~~ys-- 385 (615)
T TIGR02903 323 DFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKINV----------H---LA-AGVEELIARYT-- 385 (615)
T ss_pred eEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHcCC----------C---CC-HHHHHHHHHCC--
Confidence 356665 55778899999999997 6789999999999999999875321 1 11 23345566654
Q ss_pred CCHHHHHHHHHHHHHHHh------hhc--CCCccHHHHHHHHHHH
Q psy4165 166 LSGREIAKLGVAWQASAY------ASE--DGVLTEAMVMSKVEDS 202 (242)
Q Consensus 166 ~s~adi~~lv~~a~~~~~------~~~--~~~~~~~~~~~a~~~~ 202 (242)
+.++..-+++..+...+. +.. ...++.+++.+++...
T Consensus 386 ~~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 386 IEGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 244444444432221111 011 1268888888887654
No 151
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00027 Score=62.86 Aligned_cols=149 Identities=21% Similarity=0.244 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcc---cccHHHhccc
Q psy4165 32 AIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQ---QFDWAVNDRL 108 (242)
Q Consensus 32 ~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~---~ld~al~~Rf 108 (242)
.+..+++.........||++||+|.|..+.+ ..+-.|+...+....+|.+|+.+|..+ .+||.+.++|
T Consensus 110 ~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l 180 (366)
T COG1474 110 ILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSL 180 (366)
T ss_pred HHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhcc
Confidence 3444444444444589999999999986543 344455544444466789999998774 7888888655
Q ss_pred -ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH---HHHHHHhh
Q psy4165 109 -DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV---AWQASAYA 184 (242)
Q Consensus 109 -d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~---~a~~~~~~ 184 (242)
...|.||+.+.+|-.+|++.-... .+....++ +..++-+|... +..++|.+..+. .|-..+..
T Consensus 181 ~~~~I~F~pY~a~el~~Il~~R~~~-----------~~~~~~~~-~~vl~lia~~~-a~~~GDAR~aidilr~A~eiAe~ 247 (366)
T COG1474 181 GPSEIVFPPYTAEELYDILRERVEE-----------GFSAGVID-DDVLKLIAALV-AAESGDARKAIDILRRAGEIAER 247 (366)
T ss_pred CcceeeeCCCCHHHHHHHHHHHHHh-----------hccCCCcC-ccHHHHHHHHH-HHcCccHHHHHHHHHHHHHHHHh
Confidence 456899999999999999998764 11111222 12223333322 233336665544 33333344
Q ss_pred hcCCCccHHHHHHHHHHH
Q psy4165 185 SEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 185 ~~~~~~~~~~~~~a~~~~ 202 (242)
...+.++.++..+|....
T Consensus 248 ~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 248 EGSRKVSEDHVREAQEEI 265 (366)
T ss_pred hCCCCcCHHHHHHHHHHh
Confidence 455689999999984433
No 152
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=3.3e-05 Score=68.34 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccE
Q psy4165 32 AIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEM 111 (242)
Q Consensus 32 ~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~ 111 (242)
.+.+.|......++.-|++|||+|.+. ....+.||+.+++.+.+.++|..|+.++.+.|.+++|+ ..
T Consensus 128 ~l~~~l~~~~~~g~~rVviIDeAd~l~------------~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc-~~ 194 (351)
T PRK09112 128 RVGHFLSQTSGDGNWRIVIIDPADDMN------------RNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRC-QP 194 (351)
T ss_pred HHHHHhhhccccCCceEEEEEchhhcC------------HHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhc-cE
Confidence 344444433223336899999999993 23457788888877777888888899999999999999 59
Q ss_pred EEeCCCCHHHHHHHHHHH
Q psy4165 112 VEFPLPTLNERERLVRLY 129 (242)
Q Consensus 112 i~~~~P~~~~R~~Il~~~ 129 (242)
+.|++|+.++-.++++..
T Consensus 195 i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 195 ISLKPLDDDELKKALSHL 212 (351)
T ss_pred EEecCCCHHHHHHHHHHh
Confidence 999999999999999874
No 153
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.10 E-value=0.00015 Score=64.87 Aligned_cols=135 Identities=21% Similarity=0.266 Sum_probs=88.3
Q ss_pred EEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc---cHHHhccc--ccEEEeCCCCHHH
Q psy4165 47 LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF---DWAVNDRL--DEMVEFPLPTLNE 121 (242)
Q Consensus 47 ~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l---d~al~~Rf--d~~i~~~~P~~~~ 121 (242)
-+++||||+.+.++... .+..-..+|.+. ..++-+|+.+-..|..+ .|.|.+|| ...+++.+|+.+.
T Consensus 177 dlllIDDiq~l~gk~~~---qeefFh~FN~l~-----~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 177 DLLLIDDIQFLAGKERT---QEEFFHTFNALL-----ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDET 248 (408)
T ss_pred CeeeechHhHhcCChhH---HHHHHHHHHHHH-----hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHH
Confidence 58999999999765322 122333333332 23334556555566655 48888887 4578889999999
Q ss_pred HHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 122 RERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 122 R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
|..||+......+. .++ +..+..+|.+.+ =+.+++..+++...+.+...+. .+|.+.+.+.+..
T Consensus 249 r~aiL~kka~~~~~----------~i~----~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~ 312 (408)
T COG0593 249 RLAILRKKAEDRGI----------EIP----DEVLEFLAKRLD-RNVRELEGALNRLDAFALFTKR-AITIDLVKEILKD 312 (408)
T ss_pred HHHHHHHHHHhcCC----------CCC----HHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHH
Confidence 99999997665322 222 333477888876 5788888888743333333222 7888888888877
Q ss_pred HHHh
Q psy4165 202 SIRA 205 (242)
Q Consensus 202 ~~~~ 205 (242)
....
T Consensus 313 ~~~~ 316 (408)
T COG0593 313 LLRA 316 (408)
T ss_pred hhcc
Confidence 7654
No 154
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.07 E-value=8e-05 Score=73.18 Aligned_cols=155 Identities=14% Similarity=0.175 Sum_probs=94.0
Q ss_pred hHHHHHHhc---CCcEEEEecCCccccc------ch-----HHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccc
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMG------SS-----GVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS 67 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~------g~-----~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~ 67 (242)
+|++||..+ +.+++.++++.+.... |. +... ...+..+....+.+||||||+|.+-
T Consensus 614 lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~--------- 683 (857)
T PRK10865 614 LCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAH--------- 683 (857)
T ss_pred HHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCC---------
Confidence 789999876 4578888887764311 10 0000 1123333333324999999999772
Q ss_pred hHHHHHHHHHHHHhccC-----------CCCeEEEEecCCc-------------------------ccccHHHhcccccE
Q psy4165 68 ESLRATLNAFLYRTGEQ-----------SDKFMLVLASNTP-------------------------QQFDWAVNDRLDEM 111 (242)
Q Consensus 68 ~~~~~~l~~lL~~l~~~-----------~~~v~vI~tTn~~-------------------------~~ld~al~~Rfd~~ 111 (242)
.. +.+.|++-+++. -.+.++|+|||.. ..+.|+|+.|+|..
T Consensus 684 ~~---v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~i 760 (857)
T PRK10865 684 PD---VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEV 760 (857)
T ss_pred HH---HHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCee
Confidence 22 334444444311 1236788999873 12457888999999
Q ss_pred EEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCC----HHHHHHHHH
Q psy4165 112 VEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLS----GREIAKLGV 176 (242)
Q Consensus 112 i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s----~adi~~lv~ 176 (242)
+.|.+++.+...+|++.++.++...... .++.. .++ +..++.|+.. ||+ .+.|+++++
T Consensus 761 ivF~PL~~edl~~Iv~~~L~~l~~rl~~---~gi~l-~is-~~al~~L~~~--gy~~~~GARpL~r~I~ 822 (857)
T PRK10865 761 VVFHPLGEQHIASIAQIQLQRLYKRLEE---RGYEI-HIS-DEALKLLSEN--GYDPVYGARPLKRAIQ 822 (857)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHHh---CCCcC-cCC-HHHHHHHHHc--CCCccCChHHHHHHHH
Confidence 9999999999999999999764221100 11221 223 3344667765 554 668888775
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.07 E-value=9.4e-05 Score=72.53 Aligned_cols=157 Identities=13% Similarity=0.123 Sum_probs=96.1
Q ss_pred hHHHHHHhc---CCcEEEEecCCccccc------chH-----HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccc
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMG------SSG-----VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS 67 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~------g~~-----e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~ 67 (242)
||+++|+.+ +.+++.++.+++.... |.. -.....+....+... .+||+|||+|..-
T Consensus 555 lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p-~~VvllDeieka~--------- 624 (821)
T CHL00095 555 LTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKP-YTVVLFDEIEKAH--------- 624 (821)
T ss_pred HHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCC-CeEEEECChhhCC---------
Confidence 789999986 3578888877764210 110 001123444455442 5999999999873
Q ss_pred hHHHHHHHHHHHHhccC-----------CCCeEEEEecCCccc-------------------------------------
Q psy4165 68 ESLRATLNAFLYRTGEQ-----------SDKFMLVLASNTPQQ------------------------------------- 99 (242)
Q Consensus 68 ~~~~~~l~~lL~~l~~~-----------~~~v~vI~tTn~~~~------------------------------------- 99 (242)
. .+.+.||+-+++. -.+.++|+|||....
T Consensus 625 ~---~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (821)
T CHL00095 625 P---DIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQF 701 (821)
T ss_pred H---HHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHh
Confidence 2 2445555555421 245889999885321
Q ss_pred ccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhC--CCCCHHHHHHHHH
Q psy4165 100 FDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT--EGLSGREIAKLGV 176 (242)
Q Consensus 100 ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t--~g~s~adi~~lv~ 176 (242)
+.|.|++|+|.+|.|.+.+.++..+|++..+.++...... .++.+. ++ +...+.|++.. ..|-++.|+.++.
T Consensus 702 f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~---~~i~l~-~~-~~~~~~La~~~~~~~~GAR~l~r~i~ 775 (821)
T CHL00095 702 FRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNE---QGIQLE-VT-ERIKTLLIEEGYNPLYGARPLRRAIM 775 (821)
T ss_pred cCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHH---CCcEEE-EC-HHHHHHHHHhcCCCCCChhhHHHHHH
Confidence 2356779999999999999999999999999864222110 111111 11 22346677761 2345677777774
No 156
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.05 E-value=0.00011 Score=64.72 Aligned_cols=151 Identities=15% Similarity=0.049 Sum_probs=95.3
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHH----hc------cCCCCeEEEEecCCcc-cccHHHhcccccEEEe
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYR----TG------EQSDKFMLVLASNTPQ-QFDWAVNDRLDEMVEF 114 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~----l~------~~~~~v~vI~tTn~~~-~ld~al~~Rfd~~i~~ 114 (242)
..+||+||++.+-+ .....+.+.+.. +. ..+.++++|+|.|..+ .+.++++.||...+.+
T Consensus 145 ~GiL~lDEInrL~~---------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l 215 (350)
T CHL00081 145 RGILYVDEVNLLDD---------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEI 215 (350)
T ss_pred CCEEEecChHhCCH---------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeec
Confidence 57999999999942 233333333322 00 1234678888888665 6999999999999999
Q ss_pred CCCC-HHHHHHHHHHHHhcc--ccchhhhc-------cc-----ccccCCCChh-H---hHHHHHHhCCCCCHHHHHHHH
Q psy4165 115 PLPT-LNERERLVRLYFDKF--VLQPAAQG-------KR-----RLKVAPFDYT-S---LCSKIAHVTEGLSGREIAKLG 175 (242)
Q Consensus 115 ~~P~-~~~R~~Il~~~l~~~--~~~~~~~~-------~~-----~~~~~~~d~~-~---~l~~la~~t~g~s~adi~~lv 175 (242)
..|+ .+.|.+|++.....- +....... .. .-.+..+.++ . -+-.++..+.--|++=--.++
T Consensus 216 ~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~ 295 (350)
T CHL00081 216 RTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTN 295 (350)
T ss_pred CCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHH
Confidence 9997 699999999864311 00000000 00 0001222221 1 123455555434666666778
Q ss_pred HHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 176 VAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+.|++.++-.++..++.+|+..+..-++.-
T Consensus 296 raArA~Aal~GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 296 RAAKALAAFEGRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 888888888888999999999998887754
No 157
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.05 E-value=8.3e-05 Score=65.26 Aligned_cols=145 Identities=17% Similarity=0.126 Sum_probs=89.5
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhcc-------------CCCCeEEEEecCCcc-cccHHHhcccccE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGE-------------QSDKFMLVLASNTPQ-QFDWAVNDRLDEM 111 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~-------------~~~~v~vI~tTn~~~-~ld~al~~Rfd~~ 111 (242)
..+||+||++.+- .. +...++..|+. .+.++++|+|+|..+ .++++++.||...
T Consensus 129 ~GiL~lDEInrl~---------~~---~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~ 196 (334)
T PRK13407 129 RGYLYIDEVNLLE---------DH---IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLS 196 (334)
T ss_pred CCeEEecChHhCC---------HH---HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceE
Confidence 3699999999983 22 33444444421 245688999988655 5899999999999
Q ss_pred EEeCCCCH-HHHHHHHHHHHhccc--cchh--hhcc----------cccccCCCChh-H---hHHHHHHhCC-CCCHHHH
Q psy4165 112 VEFPLPTL-NERERLVRLYFDKFV--LQPA--AQGK----------RRLKVAPFDYT-S---LCSKIAHVTE-GLSGREI 171 (242)
Q Consensus 112 i~~~~P~~-~~R~~Il~~~l~~~~--~~~~--~~~~----------~~~~~~~~d~~-~---~l~~la~~t~-g~s~adi 171 (242)
+.+++|.. ++|.+|++.....-. .... ...+ ..-.+..+-++ . -+-.++..+. .=.-++|
T Consensus 197 v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i 276 (334)
T PRK13407 197 VEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGEL 276 (334)
T ss_pred EEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHH
Confidence 99999976 999999998643210 0000 0000 00001111111 1 1233444443 1234455
Q ss_pred HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 172 AKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 172 ~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
. +++.|++.+.-.++..++.+|+..+..-+.
T Consensus 277 ~-l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl 307 (334)
T PRK13407 277 T-LLRAARALAAFEGAEAVGRSHLRSVATMAL 307 (334)
T ss_pred H-HHHHHHHHHHHcCCCeeCHHHHHHHHHHhh
Confidence 5 888788888888888999999987775554
No 158
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.01 E-value=0.00053 Score=63.25 Aligned_cols=118 Identities=19% Similarity=0.334 Sum_probs=79.6
Q ss_pred HHHHHHHhCCC--cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEE
Q psy4165 35 KVFDWASSSRK--GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMV 112 (242)
Q Consensus 35 ~~f~~A~~~~~--p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i 112 (242)
+.++..+...+ |+|+++.|++.++. .....+.+..+.......+.. +||.+. ...+|+.|.+ +-..+
T Consensus 69 ~al~~i~~~~~~~~~~~vl~d~h~~~~-------~~~~~r~l~~l~~~~~~~~~~-~i~~~~--~~~~p~el~~-~~~~~ 137 (489)
T CHL00195 69 QALEFIEKLTPETPALFLLKDFNRFLN-------DISISRKLRNLSRILKTQPKT-IIIIAS--ELNIPKELKD-LITVL 137 (489)
T ss_pred HHHHHHHhcCCCCCcEEEEecchhhhc-------chHHHHHHHHHHHHHHhCCCE-EEEEcC--CCCCCHHHHh-ceeEE
Confidence 33344444332 79999999999983 123455555555555444433 444443 2567777755 44588
Q ss_pred EeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHH
Q psy4165 113 EFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVA 177 (242)
Q Consensus 113 ~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~ 177 (242)
++|+|+.+++.++++.+.... +...+ +..++.+++.+.|+|-.++++++..
T Consensus 138 ~~~lP~~~ei~~~l~~~~~~~----------~~~~~----~~~~~~l~~~~~gls~~~~~~~~~~ 188 (489)
T CHL00195 138 EFPLPTESEIKKELTRLIKSL----------NIKID----SELLENLTRACQGLSLERIRRVLSK 188 (489)
T ss_pred eecCcCHHHHHHHHHHHHHhc----------CCCCC----HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999998887532 22223 3445899999999999999999863
No 159
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=6.3e-05 Score=66.91 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=63.1
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHH
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERER 124 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~ 124 (242)
.|-|++|||+|.+- ....+.||+.+++.++..++|.+|+.++.+.+.+++|+. .+.|++|+.++-.+
T Consensus 141 ~~kVviIDead~m~------------~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~-~i~l~~l~~~~i~~ 207 (365)
T PRK07471 141 GWRVVIVDTADEMN------------ANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCR-KLRLRPLAPEDVID 207 (365)
T ss_pred CCEEEEEechHhcC------------HHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccce-EEECCCCCHHHHHH
Confidence 48999999999882 345678888898877788889999999999999999996 89999999999999
Q ss_pred HHHHHH
Q psy4165 125 LVRLYF 130 (242)
Q Consensus 125 Il~~~l 130 (242)
++....
T Consensus 208 ~L~~~~ 213 (365)
T PRK07471 208 ALAAAG 213 (365)
T ss_pred HHHHhc
Confidence 988764
No 160
>PHA02244 ATPase-like protein
Probab=97.95 E-value=7e-05 Score=66.16 Aligned_cols=112 Identities=22% Similarity=0.287 Sum_probs=70.3
Q ss_pred ChHHHHHHhcCCcEEEEecC----CcccccchHHHHHH-HHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGG----DVAPMGSSGVTAIH-KVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLN 75 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~----~l~~~~g~~e~~l~-~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~ 75 (242)
.||+++|..++.||+.++.. ++....+.. ..+. .-|-.|... +.+|+|||+|.+- ......++
T Consensus 134 tLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~-g~~~dgpLl~A~~~--GgvLiLDEId~a~---------p~vq~~L~ 201 (383)
T PHA02244 134 HIAEQIAEALDLDFYFMNAIMDEFELKGFIDAN-GKFHETPFYEAFKK--GGLFFIDEIDASI---------PEALIIIN 201 (383)
T ss_pred HHHHHHHHHhCCCEEEEecChHHHhhccccccc-ccccchHHHHHhhc--CCEEEEeCcCcCC---------HHHHHHHH
Confidence 37999999999999998842 111111000 0111 123333322 7999999999883 23344455
Q ss_pred HHHHH-----hc---cCCCCeEEEEecCCc-----------ccccHHHhcccccEEEeCCCCHHHHHHHH
Q psy4165 76 AFLYR-----TG---EQSDKFMLVLASNTP-----------QQFDWAVNDRLDEMVEFPLPTLNERERLV 126 (242)
Q Consensus 76 ~lL~~-----l~---~~~~~v~vI~tTn~~-----------~~ld~al~~Rfd~~i~~~~P~~~~R~~Il 126 (242)
.++.. ++ ....++-+|+|+|.+ ..+++|++.||- .|+|+.|+. ....|.
T Consensus 202 ~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv-~I~~dyp~~-~E~~i~ 269 (383)
T PHA02244 202 SAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA-PIEFDYDEK-IEHLIS 269 (383)
T ss_pred HHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE-EeeCCCCcH-HHHHHh
Confidence 55532 11 123467899999973 678999999995 899999984 333444
No 161
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.2e-05 Score=66.93 Aligned_cols=94 Identities=19% Similarity=0.233 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhc----------cCCCCeEEEEec----CCc
Q psy4165 32 AIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG----------EQSDKFMLVLAS----NTP 97 (242)
Q Consensus 32 ~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~----------~~~~~v~vI~tT----n~~ 97 (242)
.-++....|.. -.||||||||.++.+.+.++..-....+...+|--++ -..+.|++|++. ..|
T Consensus 240 i~~eAi~~aE~---~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKP 316 (444)
T COG1220 240 IKQEAIDAAEQ---NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKP 316 (444)
T ss_pred HHHHHHHHHHh---cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCCh
Confidence 34444445553 3799999999999876533311112233445554442 124568999865 789
Q ss_pred ccccHHHhcccccEEEeCCCCHHHHHHHHHH
Q psy4165 98 QQFDWAVNDRLDEMVEFPLPTLNERERLVRL 128 (242)
Q Consensus 98 ~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~ 128 (242)
.+|-|.|.|||...+++...+.+.-.+||..
T Consensus 317 SDLiPELQGRfPIRVEL~~Lt~~Df~rILte 347 (444)
T COG1220 317 SDLIPELQGRFPIRVELDALTKEDFERILTE 347 (444)
T ss_pred hhcChhhcCCCceEEEcccCCHHHHHHHHcC
Confidence 9999999999999999999999998888753
No 162
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.92 E-value=3.4e-05 Score=65.95 Aligned_cols=134 Identities=14% Similarity=0.177 Sum_probs=90.2
Q ss_pred CCCCeEEEEec--CCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHH
Q psy4165 84 QSDKFMLVLAS--NTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAH 161 (242)
Q Consensus 84 ~~~~v~vI~tT--n~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~ 161 (242)
.++.|++|||| |....|.+||++|. +.+++.+++.++-..+++..+...... +...+ .++ +..++.|+.
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~~~----~~~~~---~i~-~~al~~ia~ 75 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVSRL-FILRLKRLSLVATQKLIEKALSQDEVL----AKHKF---KID-DGLYNAMHN 75 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhhcc----CCcCC---CcC-HHHHHHHHH
Confidence 46779999977 89999999999999 599999999999999999999741100 00011 122 223344554
Q ss_pred hCCCCCHHHHHHHHHHHHHHHh-hhcCC--CccHHHHHHHHHHHHHhhhhhhhcccccCCCcccccCCCCCCC
Q psy4165 162 VTEGLSGREIAKLGVAWQASAY-ASEDG--VLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGVDKSSPS 231 (242)
Q Consensus 162 ~t~g~s~adi~~lv~~a~~~~~-~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 231 (242)
++++|.+..++..+.+.. ....+ .+|.+++.+.+++...... +.+...++...+.+.+..||.|.
T Consensus 76 ----~a~GDaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yD-k~gd~HYd~iSAf~KSiRGSDpD 143 (300)
T PRK14700 76 ----YNEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFH-REGKEFYEQLSAFHKSVRGTDPD 143 (300)
T ss_pred ----hcCCHHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhccc-CCcchhHHHHHHHHHHhhcCCcc
Confidence 567899999987777554 22222 3899999888876654433 44444555555555666666664
No 163
>KOG0741|consensus
Probab=97.92 E-value=7.4e-05 Score=68.13 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=84.2
Q ss_pred hHHHHHHhcCCcEEEEecCCcccccchHH--HHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMGSSGV--TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~g~~e--~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
||-.||..++.||+.+-.++-+..+.|+. ..++++|+-|.+.. -+||++|+|+.|..--.-+ ..-.+.++..|+.
T Consensus 554 LAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~-lsiivvDdiErLiD~vpIG--PRfSN~vlQaL~V 630 (744)
T KOG0741|consen 554 LAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSP-LSIIVVDDIERLLDYVPIG--PRFSNLVLQALLV 630 (744)
T ss_pred HHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCc-ceEEEEcchhhhhcccccC--chhhHHHHHHHHH
Confidence 67789999999999976554333333554 47999999999876 6999999999997422111 1112334445554
Q ss_pred Hhc---cCCCCeEEEEecCCcccccHHHh-cccccEEEeCCCCH-HHHHHHHHH
Q psy4165 80 RTG---EQSDKFMLVLASNTPQQFDWAVN-DRLDEMVEFPLPTL-NERERLVRL 128 (242)
Q Consensus 80 ~l~---~~~~~v~vI~tTn~~~~ld~al~-~Rfd~~i~~~~P~~-~~R~~Il~~ 128 (242)
.+. ....+.+|++||++.+-|...=+ ..|+..|++|.-+. ++-.+++..
T Consensus 631 llK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 631 LLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred HhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 453 33446889999988776654433 78999999987744 665555554
No 164
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.0001 Score=64.75 Aligned_cols=84 Identities=19% Similarity=0.127 Sum_probs=65.7
Q ss_pred HHHHHHHHHH---hCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhccc
Q psy4165 32 AIHKVFDWAS---SSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRL 108 (242)
Q Consensus 32 ~l~~~f~~A~---~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rf 108 (242)
.++++.+.+. ..++.-|++|||+|.+. ....+.||+.|++.++.+++|.+|+.+..|.|.+++|.
T Consensus 94 ~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc 161 (329)
T PRK08058 94 QIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRC 161 (329)
T ss_pred HHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhc
Confidence 4555544443 12225799999999883 33568899999988888899999999999999999999
Q ss_pred ccEEEeCCCCHHHHHHHHHH
Q psy4165 109 DEMVEFPLPTLNERERLVRL 128 (242)
Q Consensus 109 d~~i~~~~P~~~~R~~Il~~ 128 (242)
. .++|++|+.++-.+.++.
T Consensus 162 ~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 162 Q-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred e-eeeCCCCCHHHHHHHHHH
Confidence 6 899999999987666653
No 165
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=5.5e-05 Score=66.56 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++.+.+... ++--|++||++|.+. ...-|.||+.+++.+.++++|.+|++++.|.|.+++|
T Consensus 115 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SR 182 (342)
T PRK06964 115 EQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSR 182 (342)
T ss_pred HHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhc
Confidence 3556555544321 124699999999993 3456899999999999999999999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHH
Q psy4165 108 LDEMVEFPLPTLNERERLVRLY 129 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~ 129 (242)
+. .+.|++|+.++..+.|...
T Consensus 183 cq-~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 183 CR-QFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CE-EEEecCCCHHHHHHHHHHc
Confidence 95 9999999999988888763
No 166
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.91 E-value=0.00046 Score=59.32 Aligned_cols=146 Identities=21% Similarity=0.182 Sum_probs=91.1
Q ss_pred HHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhc-cCCCCeEEEEecCC--cccccHHHhccccc
Q psy4165 34 HKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG-EQSDKFMLVLASNT--PQQFDWAVNDRLDE 110 (242)
Q Consensus 34 ~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~-~~~~~v~vI~tTn~--~~~ld~al~~Rfd~ 110 (242)
..+...-+..+ +-+|+|||++.++... ...++.+..+|+.+. +..=.++.+||-.- .-.-|+.+.+||+
T Consensus 135 ~~~~~llr~~~-vrmLIIDE~H~lLaGs------~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~- 206 (302)
T PF05621_consen 135 QQVLRLLRRLG-VRMLIIDEFHNLLAGS------YRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFE- 206 (302)
T ss_pred HHHHHHHHHcC-CcEEEeechHHHhccc------HHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccC-
Confidence 33444555565 8999999999987532 223455556666664 33335666665422 2234677779998
Q ss_pred EEEeCCC-CHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy4165 111 MVEFPLP-TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGV 189 (242)
Q Consensus 111 ~i~~~~P-~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~ 189 (242)
.+.+|.. ..++-..++..+-..+++... +.+.-......|-..|+|.+| +|.++++.|...+...+...
T Consensus 207 ~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~---------S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~E~ 276 (302)
T PF05621_consen 207 PFELPRWELDEEFRRLLASFERALPLRKP---------SNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSGEER 276 (302)
T ss_pred CccCCCCCCCcHHHHHHHHHHHhCCCCCC---------CCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcCCce
Confidence 6677755 345556677777776665421 112212233678889998887 78888885555555556667
Q ss_pred ccHHHHHH
Q psy4165 190 LTEAMVMS 197 (242)
Q Consensus 190 ~~~~~~~~ 197 (242)
||.+.+..
T Consensus 277 It~~~l~~ 284 (302)
T PF05621_consen 277 ITREILDK 284 (302)
T ss_pred ecHHHHhh
Confidence 88877754
No 167
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.89 E-value=0.00011 Score=63.89 Aligned_cols=112 Identities=22% Similarity=0.250 Sum_probs=80.8
Q ss_pred hHHHHHHhcC------------------------CcEEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEecc
Q psy4165 2 FAKKLAHHSG------------------------MDYAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDEA 54 (242)
Q Consensus 2 lA~aiA~e~~------------------------~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDei 54 (242)
+|.++|+++. -.++.+++++..... -....++++-+..... .+.-||+|||+
T Consensus 40 ~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~-i~~~~vr~~~~~~~~~~~~~~~kviiidea 118 (325)
T COG0470 40 AALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID-IIVEQVRELAEFLSESPLEGGYKVVIIDEA 118 (325)
T ss_pred HHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-chHHHHHHHHHHhccCCCCCCceEEEeCcH
Confidence 5778888877 467888887765431 1223344433333222 23689999999
Q ss_pred cccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHH
Q psy4165 55 DAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVR 127 (242)
Q Consensus 55 D~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~ 127 (242)
|.+.. ...+.++.-+.+++.+..+|.+||.++.|-+.+++|.. .+.|++|+...+....+
T Consensus 119 d~mt~------------~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 119 DKLTE------------DAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred HHHhH------------HHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcce-eeecCCchHHHHHHHhh
Confidence 99943 45688998898889899999999999999999999996 88998866655544444
No 168
>KOG1969|consensus
Probab=97.88 E-value=0.00034 Score=66.00 Aligned_cols=147 Identities=16% Similarity=0.192 Sum_probs=93.8
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHh----C---CCcEEEEEecccccccccCCCccchHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASS----S---RKGLVLFIDEADAFLRKRSSETISESLRAT 73 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~----~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~ 73 (242)
+||+.||+++|+.++.+++++-.+ ...+++....|-. . .+|..|+|||||--. ...
T Consensus 341 TLAHViAkqaGYsVvEINASDeRt-----~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~------------~~~ 403 (877)
T KOG1969|consen 341 TLAHVIAKQAGYSVVEINASDERT-----APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP------------RAA 403 (877)
T ss_pred HHHHHHHHhcCceEEEeccccccc-----HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc------------HHH
Confidence 489999999999999999998643 2233333332221 1 359999999999642 223
Q ss_pred HHHHHHHhc-------cCCC--------------CeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHH
Q psy4165 74 LNAFLYRTG-------EQSD--------------KFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 74 l~~lL~~l~-------~~~~--------------~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l 130 (242)
+..+|..+. ...+ .--+|+.+|.. .-|||+ +-|-..|.|.+|...--.+=|+...
T Consensus 404 Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC 481 (877)
T KOG1969|consen 404 VDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLNEIC 481 (877)
T ss_pred HHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHHHHH
Confidence 333333221 1111 13577778854 568998 6799999999998887776666655
Q ss_pred hccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q psy4165 131 DKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYA 184 (242)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~ 184 (242)
.+- +|. .|. ..|...|+ ++..||+..++..+..+..
T Consensus 482 ~rE----------~mr---~d~----~aL~~L~e-l~~~DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 482 HRE----------NMR---ADS----KALNALCE-LTQNDIRSCINTLQFLASN 517 (877)
T ss_pred hhh----------cCC---CCH----HHHHHHHH-HhcchHHHHHHHHHHHHHh
Confidence 442 222 232 55666665 6678999999966554443
No 169
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00031 Score=61.21 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=78.3
Q ss_pred hHHHHHHhcCCc--------EEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHH
Q psy4165 2 FAKKLAHHSGMD--------YAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 2 lA~aiA~e~~~~--------~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
+|+++|..+.|. ++.+.+.+ ++ .-+...++++.+.+... ++.-|++||++|.+.
T Consensus 42 la~~~a~~l~c~~~~~~h~D~~~~~~~~--~~-~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------ 106 (313)
T PRK05564 42 LAKEIALKILGKSQQREYVDIIEFKPIN--KK-SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------ 106 (313)
T ss_pred HHHHHHHHHcCCCCCCCCCCeEEecccc--CC-CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC------------
Confidence 688888876542 23332210 11 01223466655544321 225799999998882
Q ss_pred HHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHH
Q psy4165 71 RATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 71 ~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l 130 (242)
....+.||+.+++.+.++++|.+|+.++.|.|.+++|.. .++|++|+.++-...++..+
T Consensus 107 ~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~-~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 107 EQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ-IYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce-eeeCCCcCHHHHHHHHHHHh
Confidence 234678999998888888888888889999999999996 99999999998877776554
No 170
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.87 E-value=2.5e-05 Score=62.17 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=57.9
Q ss_pred hHHHHHHhcCC----cEEEEecCCcccccchHHHHHHHHHHHH----HhCCCcEEEEEecccccccccCCCccchHHHHH
Q psy4165 2 FAKKLAHHSGM----DYAIMTGGDVAPMGSSGVTAIHKVFDWA----SSSRKGLVLFIDEADAFLRKRSSETISESLRAT 73 (242)
Q Consensus 2 lA~aiA~e~~~----~~~~v~~~~l~~~~g~~e~~l~~~f~~A----~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~ 73 (242)
||+++|..+.. +++.++++.+.. .++.+..+..++..+ .... ..||||||||...+. .+...+-....+
T Consensus 19 la~~la~~l~~~~~~~~~~~d~s~~~~-~~~~~~~~~~l~~~~~~~v~~~~-~gVVllDEidKa~~~-~~~~~~v~~~~V 95 (171)
T PF07724_consen 19 LAKALAELLFVGSERPLIRIDMSEYSE-GDDVESSVSKLLGSPPGYVGAEE-GGVVLLDEIDKAHPS-NSGGADVSGEGV 95 (171)
T ss_dssp HHHHHHHHHT-SSCCEEEEEEGGGHCS-HHHCSCHCHHHHHHTTCHHHHHH-HTEEEEETGGGCSHT-TTTCSHHHHHHH
T ss_pred HHHHHHHHhccCCccchHHHhhhcccc-cchHHhhhhhhhhcccceeeccc-hhhhhhHHHhhcccc-ccccchhhHHHH
Confidence 79999999997 999999998876 111122233322211 1111 359999999999886 222212223355
Q ss_pred HHHHHHHhc------cC-----CCCeEEEEecCCcc
Q psy4165 74 LNAFLYRTG------EQ-----SDKFMLVLASNTPQ 98 (242)
Q Consensus 74 l~~lL~~l~------~~-----~~~v~vI~tTn~~~ 98 (242)
.+.||+-|+ .. -.++++|+|+|--.
T Consensus 96 ~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 96 QNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred HHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 667777663 11 23689999998644
No 171
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.86 E-value=0.00023 Score=62.50 Aligned_cols=118 Identities=18% Similarity=0.163 Sum_probs=68.0
Q ss_pred ChHHHHHHhc---CCcEEEEecCCcccccchHHHHH---------------HHHHHHHHhCCCcEEEEEecccccccccC
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAI---------------HKVFDWASSSRKGLVLFIDEADAFLRKRS 62 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l---------------~~~f~~A~~~~~p~Il~iDeiD~l~~~r~ 62 (242)
++|++|-... +.||+.++|+.+.... .+..+ ...|+.|. +..|||||||.+-
T Consensus 37 ~lAr~iH~~s~r~~~pfv~vnc~~~~~~~--l~~~lfG~~~g~~~ga~~~~~G~~~~a~----gGtL~Ldei~~L~---- 106 (329)
T TIGR02974 37 LIAARLHYLSKRWQGPLVKLNCAALSENL--LDSELFGHEAGAFTGAQKRHQGRFERAD----GGTLFLDELATAS---- 106 (329)
T ss_pred HHHHHHHHhcCccCCCeEEEeCCCCChHH--HHHHHhccccccccCcccccCCchhhCC----CCEEEeCChHhCC----
Confidence 3677776544 3699999998763211 01111 01122222 6899999999983
Q ss_pred CCccchHHHHHHHHHHHHhc--------cCCCCeEEEEecCCc-------ccccHHHhcccc-cEEEeCCCC--HHHHHH
Q psy4165 63 SETISESLRATLNAFLYRTG--------EQSDKFMLVLASNTP-------QQFDWAVNDRLD-EMVEFPLPT--LNERER 124 (242)
Q Consensus 63 ~~~~~~~~~~~l~~lL~~l~--------~~~~~v~vI~tTn~~-------~~ld~al~~Rfd-~~i~~~~P~--~~~R~~ 124 (242)
...+..+..+|..-. .....+-+|++||.. ..+.+.|..||. ..|++|+.. .++...
T Consensus 107 -----~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~ 181 (329)
T TIGR02974 107 -----LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIML 181 (329)
T ss_pred -----HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHH
Confidence 333434444443211 112357888888753 245566667773 466666554 466677
Q ss_pred HHHHHHhcc
Q psy4165 125 LVRLYFDKF 133 (242)
Q Consensus 125 Il~~~l~~~ 133 (242)
++++|+.++
T Consensus 182 L~~~fl~~~ 190 (329)
T TIGR02974 182 LAEHFAIRM 190 (329)
T ss_pred HHHHHHHHH
Confidence 778887764
No 172
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.84 E-value=0.00017 Score=68.27 Aligned_cols=142 Identities=21% Similarity=0.204 Sum_probs=85.0
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHh--c--c--------------CCCCeEEEEecCCc--ccccHHHh
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT--G--E--------------QSDKFMLVLASNTP--QQFDWAVN 105 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l--~--~--------------~~~~v~vI~tTn~~--~~ld~al~ 105 (242)
..+|||||++.+- ...+..+..+|..= . . .+-.+.+|+++|.. ..+||.|+
T Consensus 218 gGtL~Ldei~~L~---------~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~ 288 (608)
T TIGR00764 218 KGVLYIDEIKTMP---------LEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALR 288 (608)
T ss_pred CCEEEEEChHhCC---------HHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHH
Confidence 5899999999994 22333333444321 0 1 11257889999864 57999999
Q ss_pred cccc---cEEEeC--CC-CHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHH----HhCC-----CCCHHH
Q psy4165 106 DRLD---EMVEFP--LP-TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIA----HVTE-----GLSGRE 170 (242)
Q Consensus 106 ~Rfd---~~i~~~--~P-~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la----~~t~-----g~s~ad 170 (242)
.||+ ..++|+ .| +.+.|.++.+.....+..+ + ....++ ...+..+. +..+ -.+.++
T Consensus 289 ~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~-------G-~l~~~s-~~Av~~Li~~~~R~ag~r~~lsl~~R~ 359 (608)
T TIGR00764 289 SRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKD-------G-RIPHFT-RDAVEEIVREAQRRAGRKDHLTLRLRE 359 (608)
T ss_pred HHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHh-------C-CCCcCC-HHHHHHHHHHHHHHHhcccccCCCHHH
Confidence 9999 667664 34 5666766655544332111 0 011222 11122222 2211 145799
Q ss_pred HHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 171 IAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 171 i~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
|.++++.|...+.......++.+|+.+|++.....
T Consensus 360 L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~~ 394 (608)
T TIGR00764 360 LGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKTL 394 (608)
T ss_pred HHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHHH
Confidence 99999976544444555689999999998877543
No 173
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.83 E-value=0.00027 Score=52.50 Aligned_cols=107 Identities=20% Similarity=0.218 Sum_probs=71.8
Q ss_pred hHHHHHHhcCCc---EEEEecCCcccc---------------cchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCC
Q psy4165 2 FAKKLAHHSGMD---YAIMTGGDVAPM---------------GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSS 63 (242)
Q Consensus 2 lA~aiA~e~~~~---~~~v~~~~l~~~---------------~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~ 63 (242)
+++++|..++.+ ++.++++..... .......++.++..++... |.||+|||++.+......
T Consensus 18 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~viiiDei~~~~~~~~~ 96 (148)
T smart00382 18 LARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK-PDVLILDEITSLLDAEQE 96 (148)
T ss_pred HHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC-CCEEEEECCcccCCHHHH
Confidence 688899998885 888887754321 1356678889999999876 899999999999653221
Q ss_pred CccchHHHHHHHH----HHHHhccCCCCeEEEEecCC-cccccHHHhcccccEEEeCCC
Q psy4165 64 ETISESLRATLNA----FLYRTGEQSDKFMLVLASNT-PQQFDWAVNDRLDEMVEFPLP 117 (242)
Q Consensus 64 ~~~~~~~~~~l~~----lL~~l~~~~~~v~vI~tTn~-~~~ld~al~~Rfd~~i~~~~P 117 (242)
. .... .............+|+++|. ....+..+..|++..+.++.|
T Consensus 97 ~--------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 97 A--------LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred H--------HHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 1 1100 00111233455688888886 455555555799999988765
No 174
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=0.00028 Score=61.53 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=61.8
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERL 125 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~I 125 (242)
--|++||++|.+. ...-|.||+.+++.+.++++|..|+.++.|-|.+++|.. .+.|++|+.++..+.
T Consensus 109 ~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq-~~~~~~~~~~~~~~~ 175 (319)
T PRK06090 109 YRLFVIEPADAMN------------ESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQ-QWVVTPPSTAQAMQW 175 (319)
T ss_pred ceEEEecchhhhC------------HHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcce-eEeCCCCCHHHHHHH
Confidence 4799999999993 345689999999999999999999999999999999997 889999999988877
Q ss_pred HHH
Q psy4165 126 VRL 128 (242)
Q Consensus 126 l~~ 128 (242)
+..
T Consensus 176 L~~ 178 (319)
T PRK06090 176 LKG 178 (319)
T ss_pred HHH
Confidence 654
No 175
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.72 E-value=0.00038 Score=54.79 Aligned_cols=90 Identities=22% Similarity=0.330 Sum_probs=60.5
Q ss_pred cEEEEecCCcccccchHHHHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeE
Q psy4165 13 DYAIMTGGDVAPMGSSGVTAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFM 89 (242)
Q Consensus 13 ~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~ 89 (242)
.++.++...-.... ....++++...+.. .++.-|++|||+|.+ .....+.||+.|++++..++
T Consensus 69 d~~~~~~~~~~~~i--~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l------------~~~a~NaLLK~LEepp~~~~ 134 (162)
T PF13177_consen 69 DFIIIKPDKKKKSI--KIDQIREIIEFLSLSPSEGKYKVIIIDEADKL------------TEEAQNALLKTLEEPPENTY 134 (162)
T ss_dssp TEEEEETTTSSSSB--SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHSTTTTEE
T ss_pred ceEEEecccccchh--hHHHHHHHHHHHHHHHhcCCceEEEeehHhhh------------hHHHHHHHHHHhcCCCCCEE
Confidence 45666554432111 12344555444332 223689999999998 34567899999999999999
Q ss_pred EEEecCCcccccHHHhcccccEEEeCCC
Q psy4165 90 LVLASNTPQQFDWAVNDRLDEMVEFPLP 117 (242)
Q Consensus 90 vI~tTn~~~~ld~al~~Rfd~~i~~~~P 117 (242)
+|.+|+.++.|-|.+++|+. .+.|++.
T Consensus 135 fiL~t~~~~~il~TI~SRc~-~i~~~~l 161 (162)
T PF13177_consen 135 FILITNNPSKILPTIRSRCQ-VIRFRPL 161 (162)
T ss_dssp EEEEES-GGGS-HHHHTTSE-EEEE---
T ss_pred EEEEECChHHChHHHHhhce-EEecCCC
Confidence 99999999999999999985 7777654
No 176
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00036 Score=60.91 Aligned_cols=86 Identities=26% Similarity=0.299 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.+... ++--|++||++|.+. ....|.||+-|++.+.++++|.+|+.++.|-|.|++
T Consensus 95 idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 95 IEQVREISQKLALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS 162 (319)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh
Confidence 34566665554432 123699999999993 345689999999998899999999999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHH
Q psy4165 107 RLDEMVEFPLPTLNERERLVRL 128 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~ 128 (242)
|+. .+.|++|+.++-.+.|..
T Consensus 163 RCq-~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 163 RCQ-RLEFKLPPAHEALAWLLA 183 (319)
T ss_pred hhe-EeeCCCcCHHHHHHHHHH
Confidence 997 889999999877766654
No 177
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00047 Score=60.30 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++-+.+.. .++--|++||++|.+. ...-|.||+-+++.+..+++|.+|+.++.|.|.+++|
T Consensus 90 d~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 90 DQVREINEKVSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred HHHHHHHHHHhhccccCCceEEEEechhhhC------------HHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 345555444332 1224699999999983 3456899999999999999999999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHH
Q psy4165 108 LDEMVEFPLPTLNERERLVRLY 129 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~ 129 (242)
.. .+.|++|+.++-.+.|...
T Consensus 158 C~-~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 158 CQ-TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred ce-EEeCCCCCHHHHHHHHHHH
Confidence 96 8899999999887777654
No 178
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00045 Score=66.31 Aligned_cols=155 Identities=16% Similarity=0.164 Sum_probs=99.0
Q ss_pred hHHHHHHhcC---CcEEEEecCCccc-------------ccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc
Q psy4165 2 FAKKLAHHSG---MDYAIMTGGDVAP-------------MGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET 65 (242)
Q Consensus 2 lA~aiA~e~~---~~~~~v~~~~l~~-------------~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~ 65 (242)
||+++|..+. -.++.++.|++.. |+|-.+ ...+.+|-+.++.|||+||||+.-
T Consensus 537 LAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKA-------- 605 (786)
T COG0542 537 LAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA-------- 605 (786)
T ss_pred HHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhc--------
Confidence 7999999988 7899998777653 112111 122334444554699999999986
Q ss_pred cchHHHHHHHHHHHHhcc-----CC------CCeEEEEecCCcc----------------------------cccHHHhc
Q psy4165 66 ISESLRATLNAFLYRTGE-----QS------DKFMLVLASNTPQ----------------------------QFDWAVND 106 (242)
Q Consensus 66 ~~~~~~~~l~~lL~~l~~-----~~------~~v~vI~tTn~~~----------------------------~ld~al~~ 106 (242)
+ ..+++-||+-||. .. .+.++|+|||-=. .+.|.|+.
T Consensus 606 -H---pdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN 681 (786)
T COG0542 606 -H---PDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN 681 (786)
T ss_pred -C---HHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh
Confidence 2 3467777777751 11 1378899987321 13466668
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhC--CCCCHHHHHHHHH
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT--EGLSGREIAKLGV 176 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t--~g~s~adi~~lv~ 176 (242)
|+|.+|.|.+.+.+.-.+|+...+.++..... ..++.+.- + +...+.|+.+. +.|-++-|+++++
T Consensus 682 Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~---~~~i~l~~-s-~~a~~~l~~~gyd~~~GARpL~R~Iq 748 (786)
T COG0542 682 RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLA---ERGITLEL-S-DEAKDFLAEKGYDPEYGARPLRRAIQ 748 (786)
T ss_pred hcccEEeccCCCHHHHHHHHHHHHHHHHHHHH---hCCceEEE-C-HHHHHHHHHhccCCCcCchHHHHHHH
Confidence 99999999999999999999999987533321 01121111 0 12235566664 2356667777764
No 179
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.00053 Score=60.32 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=61.7
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERL 125 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~I 125 (242)
--|++||++|.+. ...-|.||+-|++.+.+.++|.+|+.++.|.|.+++|.. .+.|++|+.++..+.
T Consensus 109 ~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq-~~~~~~~~~~~~~~~ 175 (334)
T PRK07993 109 AKVVWLPDAALLT------------DAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR-LHYLAPPPEQYALTW 175 (334)
T ss_pred ceEEEEcchHhhC------------HHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc-cccCCCCCHHHHHHH
Confidence 5799999999983 345689999999999999999999999999999999998 689999999888777
Q ss_pred HHH
Q psy4165 126 VRL 128 (242)
Q Consensus 126 l~~ 128 (242)
|..
T Consensus 176 L~~ 178 (334)
T PRK07993 176 LSR 178 (334)
T ss_pred HHH
Confidence 754
No 180
>KOG1514|consensus
Probab=97.67 E-value=0.00043 Score=65.04 Aligned_cols=148 Identities=17% Similarity=0.226 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHh-----
Q psy4165 31 TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVN----- 105 (242)
Q Consensus 31 ~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~----- 105 (242)
..|..-|...+....||||+|||+|.|+.. .+.++-.|+.+....+.+++||+..|..+ |+..++
T Consensus 494 ~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr---------~QdVlYn~fdWpt~~~sKLvvi~IaNTmd-lPEr~l~nrvs 563 (767)
T KOG1514|consen 494 EALNFRFTVPKPKRSTTVVLIDELDILVTR---------SQDVLYNIFDWPTLKNSKLVVIAIANTMD-LPERLLMNRVS 563 (767)
T ss_pred HHHHHhhccCCCCCCCEEEEeccHHHHhcc---------cHHHHHHHhcCCcCCCCceEEEEeccccc-CHHHHhccchh
Confidence 345555554444556899999999999854 24466677777777788899999888755 566666
Q ss_pred cccc-cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHh-
Q psy4165 106 DRLD-EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAY- 183 (242)
Q Consensus 106 ~Rfd-~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~- 183 (242)
+|.+ ..|.|.+.+.++-++|+..-|..+ +.++ ...++-+|+.-.-.|| |.+....-..+++.
T Consensus 564 SRlg~tRi~F~pYth~qLq~Ii~~RL~~~--------------~~f~-~~aielvarkVAavSG-DaRraldic~RA~Ei 627 (767)
T KOG1514|consen 564 SRLGLTRICFQPYTHEQLQEIISARLKGL--------------DAFE-NKAIELVARKVAAVSG-DARRALDICRRAAEI 627 (767)
T ss_pred hhccceeeecCCCCHHHHHHHHHHhhcch--------------hhcc-hhHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 3532 478899999999999999998763 1111 1222334444433343 55554432233322
Q ss_pred hhcC---------CCccHHHHHHHHHHHHH
Q psy4165 184 ASED---------GVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 184 ~~~~---------~~~~~~~~~~a~~~~~~ 204 (242)
+.++ ..++..++++|++....
T Consensus 628 a~~~~~~~k~~~~q~v~~~~v~~Ai~em~~ 657 (767)
T KOG1514|consen 628 AEERNVKGKLAVSQLVGILHVMEAINEMLA 657 (767)
T ss_pred hhhhcccccccccceeehHHHHHHHHHHhh
Confidence 2111 25788999999888753
No 181
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.65 E-value=0.0036 Score=52.10 Aligned_cols=149 Identities=17% Similarity=0.246 Sum_probs=101.5
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
|+||+-++. |..+++|+..++ ..+-.+++..+...++-|||.||+ ++ +. +....+.+...|
T Consensus 101 LVKA~~~e~~~~glrLVEV~k~dl--------~~Lp~l~~~Lr~~~~kFIlFcDDL-SF------e~-gd~~yK~LKs~L 164 (287)
T COG2607 101 LVKALLNEYADEGLRLVEVDKEDL--------ATLPDLVELLRARPEKFILFCDDL-SF------EE-GDDAYKALKSAL 164 (287)
T ss_pred HHHHHHHHHHhcCCeEEEEcHHHH--------hhHHHHHHHHhcCCceEEEEecCC-CC------CC-CchHHHHHHHHh
Confidence 567776664 356888887666 457777888887766899999986 22 11 233445555555
Q ss_pred HH-hccCCCCeEEEEecCCcccccHHH----------------------hcccccEEEeCCCCHHHHHHHHHHHHhcccc
Q psy4165 79 YR-TGEQSDKFMLVLASNTPQQFDWAV----------------------NDRLDEMVEFPLPTLNERERLVRLYFDKFVL 135 (242)
Q Consensus 79 ~~-l~~~~~~v~vI~tTn~~~~ld~al----------------------~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~ 135 (242)
.. +...+.+|++-+|+|+-..|+.-+ ..||...+.|++|+.++-..|+..|.++.++
T Consensus 165 eG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l 244 (287)
T COG2607 165 EGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGL 244 (287)
T ss_pred cCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCC
Confidence 43 456778899999999987776322 1599999999999999999999999987544
Q ss_pred chhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 136 QPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 136 ~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
+ .++-.+.....+-|..-.|-||+--...++
T Consensus 245 ~----------~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~ 275 (287)
T COG2607 245 D----------ISDEELHAEALQWATTRGGRSGRVAWQFIR 275 (287)
T ss_pred C----------CCHHHHHHHHHHHHHhcCCCccHhHHHHHH
Confidence 3 222112222233444446778877776665
No 182
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.59 E-value=0.0014 Score=57.28 Aligned_cols=132 Identities=17% Similarity=0.121 Sum_probs=86.5
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCC------------cccccHHHhcccccEEE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNT------------PQQFDWAVNDRLDEMVE 113 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~------------~~~ld~al~~Rfd~~i~ 113 (242)
|.||||||++-|- -..++-|-..|+..-.+ ++|++||+ |..||..|+.|.- +|.
T Consensus 292 pGVLFIDEvHmLD------------IE~FsFlnrAlEse~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRll-II~ 357 (450)
T COG1224 292 PGVLFIDEVHMLD------------IECFSFLNRALESELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRLL-IIS 357 (450)
T ss_pred cceEEEechhhhh------------HHHHHHHHHHhhcccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhhhee-EEe
Confidence 8999999998771 23334333345443334 67777774 8889999998884 888
Q ss_pred eCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHH
Q psy4165 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEA 193 (242)
Q Consensus 114 ~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~ 193 (242)
..+.+.++.++|++.-.+.. ++.++ +..++.|+..-..-|-+---+|+.-+...+...+...+..+
T Consensus 358 t~py~~~EireIi~iRa~ee----------~i~l~----~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~ 423 (450)
T COG1224 358 TRPYSREEIREIIRIRAKEE----------DIELS----DDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVE 423 (450)
T ss_pred cCCCCHHHHHHHHHHhhhhh----------ccccC----HHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehh
Confidence 88889999999999987652 22222 33446677775444544444444323333333445588999
Q ss_pred HHHHHHHHHHHh
Q psy4165 194 MVMSKVEDSIRA 205 (242)
Q Consensus 194 ~~~~a~~~~~~~ 205 (242)
+++.+-+-+...
T Consensus 424 dVe~a~~lF~D~ 435 (450)
T COG1224 424 DVERAKELFLDV 435 (450)
T ss_pred HHHHHHHHHhhH
Confidence 999887776544
No 183
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0015 Score=56.17 Aligned_cols=83 Identities=19% Similarity=0.242 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++...+.. .++.-|++||++|.+. ...-|.||+.+++.+.++++|.+|+.++.|-|.+++|
T Consensus 87 dqIR~l~~~~~~~p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SR 154 (290)
T PRK07276 87 DTIRELVKNFSQSGYEGKQQVFIIKDADKMH------------VNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSR 154 (290)
T ss_pred HHHHHHHHHHhhCcccCCcEEEEeehhhhcC------------HHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHc
Confidence 345554444332 2224799999999993 3456899999998888899999999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHH
Q psy4165 108 LDEMVEFPLPTLNERERLVR 127 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~ 127 (242)
+. .|.|+. +.+.-.+++.
T Consensus 155 cq-~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 155 TQ-IFHFPK-NEAYLIQLLE 172 (290)
T ss_pred ce-eeeCCC-cHHHHHHHHH
Confidence 96 888865 4554444443
No 184
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.52 E-value=9.3e-05 Score=56.37 Aligned_cols=96 Identities=19% Similarity=0.175 Sum_probs=55.4
Q ss_pred hHHHHHHhcCCcEEEEecCCcccc---cchHHH-HHH-----HHHHHHHhCCCcEEEEEecccccccccCCCccchHHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPM---GSSGVT-AIH-----KVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~---~g~~e~-~l~-----~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
||+.+|+.++.+++.++++..... +|.-.- .-. ..+..+.. +++|++|||++.. ......
T Consensus 15 l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a---------~~~v~~ 83 (139)
T PF07728_consen 15 LARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA---------PPEVLE 83 (139)
T ss_dssp HHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG-----------HHHHH
T ss_pred HHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC---------CHHHHH
Confidence 789999999999999988775421 110000 000 00001111 3899999999987 223333
Q ss_pred HHHHHHHHh--c--------cCCC------CeEEEEecCCcc----cccHHHhccc
Q psy4165 73 TLNAFLYRT--G--------EQSD------KFMLVLASNTPQ----QFDWAVNDRL 108 (242)
Q Consensus 73 ~l~~lL~~l--~--------~~~~------~v~vI~tTn~~~----~ld~al~~Rf 108 (242)
.+..+|..- . .... ++.+|+|+|... .+++++++||
T Consensus 84 ~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 84 SLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp TTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred HHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 444444321 0 0111 389999999999 9999999998
No 185
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.49 E-value=0.00081 Score=62.16 Aligned_cols=143 Identities=24% Similarity=0.225 Sum_probs=84.3
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhc-------------cCCCCeEEEEecCCcc--------------
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG-------------EQSDKFMLVLASNTPQ-------------- 98 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~-------------~~~~~v~vI~tTn~~~-------------- 98 (242)
..+||+||++.+- . ..+..|+.-|+ ....++.+|+|+|...
T Consensus 295 gGvLfLDEi~e~~---------~---~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~ 362 (506)
T PRK09862 295 NGVLFLDELPEFE---------R---RTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPE 362 (506)
T ss_pred CCEEecCCchhCC---------H---HHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHH
Confidence 5899999998872 2 23344444332 1244689999999752
Q ss_pred -------cccHHHhcccccEEEeCCCCHH----------HHHHHHHHHHhccccchhhhcc--cccccCC----CChhH-
Q psy4165 99 -------QFDWAVNDRLDEMVEFPLPTLN----------ERERLVRLYFDKFVLQPAAQGK--RRLKVAP----FDYTS- 154 (242)
Q Consensus 99 -------~ld~al~~Rfd~~i~~~~P~~~----------~R~~Il~~~l~~~~~~~~~~~~--~~~~~~~----~d~~~- 154 (242)
.|..+++.|||..++++.|+.+ .+.+|-+.............+. ..+.... ..++.
T Consensus 363 ~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~ 442 (506)
T PRK09862 363 QTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESE 442 (506)
T ss_pred HHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHH
Confidence 4788999999999999988543 1222332222110000000000 0111000 00011
Q ss_pred ---hHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 155 ---LCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 155 ---~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
.++... ..-|+|++-...+++.|++.+.-.....++.+|+.+|+.-
T Consensus 443 ~~~~l~~~~-~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 443 DARWLEETL-IHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 112222 3347999999999998887777788889999999999864
No 186
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0016 Score=56.83 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=66.7
Q ss_pred HHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhccc
Q psy4165 32 AIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRL 108 (242)
Q Consensus 32 ~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rf 108 (242)
.++++.+.+.. .++.-|++||++|.+. ....|.||+.|++.+ +.++|..|+.++.|-|.+++|.
T Consensus 108 ~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRc 174 (314)
T PRK07399 108 QIREIKRFLSRPPLEAPRKVVVIEDAETMN------------EAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRC 174 (314)
T ss_pred HHHHHHHHHccCcccCCceEEEEEchhhcC------------HHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhc
Confidence 45555554442 2236899999999983 235678999998777 5678888889999999999999
Q ss_pred ccEEEeCCCCHHHHHHHHHHHH
Q psy4165 109 DEMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 109 d~~i~~~~P~~~~R~~Il~~~l 130 (242)
. .++|++|+.++-.++|+...
T Consensus 175 q-~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 175 Q-IIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred e-EEecCCCCHHHHHHHHHHhh
Confidence 6 99999999999998888764
No 187
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.46 E-value=0.002 Score=59.01 Aligned_cols=171 Identities=13% Similarity=0.147 Sum_probs=91.7
Q ss_pred hHHHHHHh---cCCcEEEEecCCcccccchHHHHHHHHHHH---------------HHhCCCcEEEEEecccccccccCC
Q psy4165 2 FAKKLAHH---SGMDYAIMTGGDVAPMGSSGVTAIHKVFDW---------------ASSSRKGLVLFIDEADAFLRKRSS 63 (242)
Q Consensus 2 lA~aiA~e---~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~---------------A~~~~~p~Il~iDeiD~l~~~r~~ 63 (242)
+|+++... .+.||+.++|+.+.... .-..+|-. ..... +..|||||+|.+-
T Consensus 173 ~A~~ih~~~~~~~~~~~~~~c~~~~~~~-----~~~~lfg~~~~~~~~~~~~~~g~~~~a~-~gtl~l~ei~~l~----- 241 (463)
T TIGR01818 173 VARALHRHSPRANGPFIALNMAAIPKDL-----IESELFGHEKGAFTGANTRRQGRFEQAD-GGTLFLDEIGDMP----- 241 (463)
T ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCHHH-----HHHHhcCCCCCCCCCcccCCCCcEEECC-CCeEEEEchhhCC-----
Confidence 56777655 34699999998873211 01111110 01122 6789999999983
Q ss_pred CccchHHHHHHHHHHHHhc--------cCCCCeEEEEecCCcc-------cccHHHhcccc-cEEEeCCCC--HHHHHHH
Q psy4165 64 ETISESLRATLNAFLYRTG--------EQSDKFMLVLASNTPQ-------QFDWAVNDRLD-EMVEFPLPT--LNERERL 125 (242)
Q Consensus 64 ~~~~~~~~~~l~~lL~~l~--------~~~~~v~vI~tTn~~~-------~ld~al~~Rfd-~~i~~~~P~--~~~R~~I 125 (242)
......+..+|..-. .....+-+|+||+..- .+.+.|..|+. ..|++|+.. .++...+
T Consensus 242 ----~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l 317 (463)
T TIGR01818 242 ----LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRL 317 (463)
T ss_pred ----HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHH
Confidence 333334444443211 0112466788886532 34455555543 477777665 6778888
Q ss_pred HHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCC--CHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 126 VRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGL--SGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 126 l~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~--s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
+++++..+.... +.....++ ...+..|... +| +.++|++++. .++.......++.+++...+
T Consensus 318 ~~~~l~~~~~~~------~~~~~~~~-~~a~~~L~~~--~wpgNvreL~~~~~---~~~~~~~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 318 ARHFLALAAREL------DVEPKLLD-PEALERLKQL--RWPGNVRQLENLCR---WLTVMASGDEVLVSDLPAEL 381 (463)
T ss_pred HHHHHHHHHHHh------CCCCCCcC-HHHHHHHHhC--CCCChHHHHHHHHH---HHHHhCCCCcccHHhchHHH
Confidence 888887653221 11112233 2233445444 44 3466666665 44444445677887775444
No 188
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00055 Score=59.01 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=56.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc--ccc-hHHHHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchH--HHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP--MGS-SGVTAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISES--LRA 72 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~--~~g-~~e~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~--~~~ 72 (242)
|||+.+|+.+++||-.-+++.|.. |+| +.|..+.+++..|.- .++..||||||||.+..+..+...... -..
T Consensus 112 lLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEG 191 (408)
T COG1219 112 LLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEG 191 (408)
T ss_pred HHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchH
Confidence 689999999999999999999975 557 456777777765431 112589999999999987654431111 123
Q ss_pred HHHHHHHHh
Q psy4165 73 TLNAFLYRT 81 (242)
Q Consensus 73 ~l~~lL~~l 81 (242)
+...||+-+
T Consensus 192 VQQALLKii 200 (408)
T COG1219 192 VQQALLKII 200 (408)
T ss_pred HHHHHHHHH
Confidence 445566655
No 189
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.43 E-value=0.003 Score=57.95 Aligned_cols=143 Identities=19% Similarity=0.114 Sum_probs=82.8
Q ss_pred EEEEEecccccccccCCCccchHHHHHHHHHHHHhccCC----------CCeEEEEecCCccc---ccHHHhcccccEEE
Q psy4165 47 LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQS----------DKFMLVLASNTPQQ---FDWAVNDRLDEMVE 113 (242)
Q Consensus 47 ~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~----------~~v~vI~tTn~~~~---ld~al~~Rfd~~i~ 113 (242)
.+||+|||..+. ....+.||..|.+.. ...++++|||.... ..+++..||-..+.
T Consensus 109 ~lLfLDEI~ras------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFliri~ 176 (498)
T PRK13531 109 EIVFLDEIWKAG------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRMLIRLW 176 (498)
T ss_pred cEEeecccccCC------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEEEEEE
Confidence 499999997552 235566666662111 12455666674322 22488899999999
Q ss_pred eCCCC-HHHHHHHHHHHHhc--ccc--chhhhccc--cc--ccCCCChh-H---hHHHHHHh---CC---CCCHHHHHHH
Q psy4165 114 FPLPT-LNERERLVRLYFDK--FVL--QPAAQGKR--RL--KVAPFDYT-S---LCSKIAHV---TE---GLSGREIAKL 174 (242)
Q Consensus 114 ~~~P~-~~~R~~Il~~~l~~--~~~--~~~~~~~~--~~--~~~~~d~~-~---~l~~la~~---t~---g~s~adi~~l 174 (242)
+|+|+ .++-.+|+...... .+. .+..+... .+ ....+.++ . -+-.|... +. ..|++--..+
T Consensus 177 vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l 256 (498)
T PRK13531 177 LDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKA 256 (498)
T ss_pred CCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHH
Confidence 99997 56667787764221 001 00000000 00 01112211 1 12233332 22 2799999999
Q ss_pred HHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 175 GVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 175 v~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
++.+++.|+-.++..++.+|+. .+..+
T Consensus 257 ~~~akA~A~l~GR~~V~p~Dv~-ll~~v 283 (498)
T PRK13531 257 IRLLQASAFFSGRDAIAPIDLI-LLKDC 283 (498)
T ss_pred HHHHHHHHHHCCCCCCCHHHHH-HhHHH
Confidence 9988999998999999999988 44444
No 190
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0026 Score=55.12 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=59.3
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHH
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERER 124 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~ 124 (242)
+.-|++||++|.+. ....+.||+.+++.+..+++|.+|+.+..|-|.+++|.. .++|++|+.++-.+
T Consensus 90 ~~KvvII~~~e~m~------------~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~-~~~f~~l~~~~l~~ 156 (299)
T PRK07132 90 QKKILIIKNIEKTS------------NSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQ-VFNVKEPDQQKILA 156 (299)
T ss_pred CceEEEEecccccC------------HHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeE-EEECCCCCHHHHHH
Confidence 36899999998872 235678999999888888999888899999999999996 89999999888776
Q ss_pred HHHH
Q psy4165 125 LVRL 128 (242)
Q Consensus 125 Il~~ 128 (242)
.|..
T Consensus 157 ~l~~ 160 (299)
T PRK07132 157 KLLS 160 (299)
T ss_pred HHHH
Confidence 6554
No 191
>KOG2227|consensus
Probab=97.41 E-value=0.0019 Score=58.37 Aligned_cols=109 Identities=15% Similarity=0.145 Sum_probs=77.9
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc------ccccEEEeCCCC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND------RLDEMVEFPLPT 118 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~------Rfd~~i~~~~P~ 118 (242)
.|-|+++||+|.|+.+++. ++-++..+-.-.+.++++||.+|..+.-|..|-+ --...+.|++.+
T Consensus 256 ~~~llVlDEmD~L~tr~~~---------vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYT 326 (529)
T KOG2227|consen 256 FMLLLVLDEMDHLITRSQT---------VLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYT 326 (529)
T ss_pred ceEEEEechhhHHhhcccc---------eeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCC
Confidence 3899999999999843221 2222222223566789999999998877766651 235689999999
Q ss_pred HHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 119 LNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 119 ~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
.++..+||+.-+...+.. ......++-.|+...|.|| |++.++.
T Consensus 327 k~qI~~Il~~rl~~~~t~-------------~~~~~Aie~~ArKvaa~SG-DlRkaLd 370 (529)
T KOG2227|consen 327 KDQIVEILQQRLSEESTS-------------IFLNAAIELCARKVAAPSG-DLRKALD 370 (529)
T ss_pred HHHHHHHHHHHHhccccc-------------ccchHHHHHHHHHhccCch-hHHHHHH
Confidence 999999999998764322 1124466788999998887 8888765
No 192
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.40 E-value=0.0008 Score=61.04 Aligned_cols=73 Identities=15% Similarity=0.223 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhC-CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhc----------------------cCCCCe
Q psy4165 32 AIHKVFDWASSS-RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG----------------------EQSDKF 88 (242)
Q Consensus 32 ~l~~~f~~A~~~-~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~----------------------~~~~~v 88 (242)
.+.++...|+.. ..|+|||||||+.--..+ ++..+++.|+ ..+.++
T Consensus 258 ~f~~~~~~A~~~p~~~~vliIDEINRani~k-----------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl 326 (459)
T PRK11331 258 IFYNFCQQAKEQPEKKYVFIIDEINRANLSK-----------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENV 326 (459)
T ss_pred hHHHHHHHHHhcccCCcEEEEehhhccCHHH-----------hhhhhhhhccccccccccceeeeccccccccccCCCCe
Confidence 345566677654 248999999999764322 2223222221 224569
Q ss_pred EEEEecCCcc----cccHHHhcccccEEEeCC
Q psy4165 89 MLVLASNTPQ----QFDWAVNDRLDEMVEFPL 116 (242)
Q Consensus 89 ~vI~tTn~~~----~ld~al~~Rfd~~i~~~~ 116 (242)
.+|||+|..+ .+|.|+++||. .|++.+
T Consensus 327 ~IIgTMNt~Drs~~~lD~AlrRRF~-fi~i~p 357 (459)
T PRK11331 327 YIIGLMNTADRSLAVVDYALRRRFS-FIDIEP 357 (459)
T ss_pred EEEEecCccccchhhccHHHHhhhh-eEEecC
Confidence 9999999998 89999999996 677775
No 193
>KOG0745|consensus
Probab=97.40 E-value=0.00054 Score=61.25 Aligned_cols=115 Identities=20% Similarity=0.254 Sum_probs=74.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc--ccc-hHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCc-----cchH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP--MGS-SGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSET-----ISES 69 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~--~~g-~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~-----~~~~ 69 (242)
|||+.||+-+++||...+|+.+.. |+| +.|..|.+++..|.-+ ++..|+||||+|.+.....+-+ ..+.
T Consensus 241 llaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEG 320 (564)
T KOG0745|consen 241 LLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEG 320 (564)
T ss_pred HHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccCccccccccccchh
Confidence 689999999999999999999974 556 6688899998876421 1258999999999985433222 1222
Q ss_pred HHHHHHHHHHHhc-------------cCCCCeEEEEecCCc-------ccccHHHhcc-cccEEEeCCCC
Q psy4165 70 LRATLNAFLYRTG-------------EQSDKFMLVLASNTP-------QQFDWAVNDR-LDEMVEFPLPT 118 (242)
Q Consensus 70 ~~~~l~~lL~~l~-------------~~~~~v~vI~tTn~~-------~~ld~al~~R-fd~~i~~~~P~ 118 (242)
.+ ..||+-++ ...+..+.|-|||-. -.||.-+.+| =|..+-|+.|+
T Consensus 321 VQ---QaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s 387 (564)
T KOG0745|consen 321 VQ---QALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPS 387 (564)
T ss_pred HH---HHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCC
Confidence 33 34444442 112223444444332 3567666655 46677788883
No 194
>PRK15115 response regulator GlrR; Provisional
Probab=97.36 E-value=0.0028 Score=57.69 Aligned_cols=169 Identities=17% Similarity=0.249 Sum_probs=83.5
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHH--------------hCCCcEEEEEecccccccccCCC
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWAS--------------SSRKGLVLFIDEADAFLRKRSSE 64 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~--------------~~~~p~Il~iDeiD~l~~~r~~~ 64 (242)
+|+++.... +.||+.++|..+... ..-..+|-.++ ..+.+..|||||+|.+-
T Consensus 173 lA~~ih~~s~r~~~~f~~i~c~~~~~~-----~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~------ 241 (444)
T PRK15115 173 LAQAIHNASPRASKPFIAINCGALPEQ-----LLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP------ 241 (444)
T ss_pred HHHHHHHhcCCCCCCeEEEeCCCCCHH-----HHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCC------
Confidence 677776653 479999999887321 11112232111 01125789999999984
Q ss_pred ccchHHHHHHHHHHHHhc--------cCCCCeEEEEecCCcccccHHHh-ccccc-------EEEeCCCCHHHHH----H
Q psy4165 65 TISESLRATLNAFLYRTG--------EQSDKFMLVLASNTPQQFDWAVN-DRLDE-------MVEFPLPTLNERE----R 124 (242)
Q Consensus 65 ~~~~~~~~~l~~lL~~l~--------~~~~~v~vI~tTn~~~~ld~al~-~Rfd~-------~i~~~~P~~~~R~----~ 124 (242)
...+..+..+|..-. .....+-+|+||+. +++..+. ++|.. .+.+..|...+|. .
T Consensus 242 ---~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~--~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~ 316 (444)
T PRK15115 242 ---APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR--DLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPL 316 (444)
T ss_pred ---HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC--CHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHH
Confidence 223333333433211 01125788888885 3555555 55511 3445555555654 3
Q ss_pred HHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHH
Q psy4165 125 LVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVM 196 (242)
Q Consensus 125 Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~ 196 (242)
|+++++.++.... +.....++ ...+..|....=--+.++|++++ +.++.....+.++.+++.
T Consensus 317 l~~~~l~~~~~~~------~~~~~~~~-~~a~~~L~~~~WpgNvreL~~~i---~~~~~~~~~~~i~~~~l~ 378 (444)
T PRK15115 317 LANHLLRQAAERH------KPFVRAFS-TDAMKRLMTASWPGNVRQLVNVI---EQCVALTSSPVISDALVE 378 (444)
T ss_pred HHHHHHHHHHHHh------CCCCCCcC-HHHHHHHHhCCCCChHHHHHHHH---HHHHHhCCCCccChhhhh
Confidence 5677776542211 11111223 22234444432112444555555 444444445566666654
No 195
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.33 E-value=0.0034 Score=58.73 Aligned_cols=171 Identities=17% Similarity=0.136 Sum_probs=88.7
Q ss_pred ChHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHH--------------hCCCcEEEEEecccccccccCC
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWAS--------------SSRKGLVLFIDEADAFLRKRSS 63 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~--------------~~~~p~Il~iDeiD~l~~~r~~ 63 (242)
++|++|.... +.||+.++|+.+.... .-..+|-..+ ..+.+..|||||||.+-
T Consensus 234 ~lA~~ih~~s~r~~~pfv~i~c~~~~~~~-----~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~----- 303 (534)
T TIGR01817 234 LIAKAIHYLSPRAKRPFVKVNCAALSETL-----LESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEIS----- 303 (534)
T ss_pred HHHHHHHHhCCCCCCCeEEeecCCCCHHH-----HHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCC-----
Confidence 4788888764 4699999998873211 0111221100 01125789999999993
Q ss_pred CccchHHHHHHHHHHHHhc--cC------CCCeEEEEecCCcc-------cccHHHhccc-ccEEEeCCCC--HHHHHHH
Q psy4165 64 ETISESLRATLNAFLYRTG--EQ------SDKFMLVLASNTPQ-------QFDWAVNDRL-DEMVEFPLPT--LNERERL 125 (242)
Q Consensus 64 ~~~~~~~~~~l~~lL~~l~--~~------~~~v~vI~tTn~~~-------~ld~al~~Rf-d~~i~~~~P~--~~~R~~I 125 (242)
...+..+..+|..-. .. ...+-+|+||+..- .+.+.|..|+ ...|++|+.. .++...|
T Consensus 304 ----~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L 379 (534)
T TIGR01817 304 ----PAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLL 379 (534)
T ss_pred ----HHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHH
Confidence 223333333332210 00 12467888887531 2233333344 3456666554 4667788
Q ss_pred HHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHH
Q psy4165 126 VRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVM 196 (242)
Q Consensus 126 l~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~ 196 (242)
+++++.++.... +.+ -.++ ...+..|....=--+.++|++++. .++.....+.|+.+++-
T Consensus 380 ~~~~l~~~~~~~------~~~-~~~s-~~a~~~L~~~~WPGNvrEL~~v~~---~a~~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 380 AEAFLEKFNREN------GRP-LTIT-PSAIRVLMSCKWPGNVRELENCLE---RTATLSRSGTITRSDFS 439 (534)
T ss_pred HHHHHHHHHHHc------CCC-CCCC-HHHHHHHHhCCCCChHHHHHHHHH---HHHHhCCCCcccHHHCc
Confidence 888887643221 111 1232 223344444421124556666664 44444455678887764
No 196
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.0017 Score=54.11 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=71.4
Q ss_pred HHHHHHHHHHH---hCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWAS---SSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~---~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..+|++-..+. ..++.-|++|+++|.+. ....+.||+-+++.+.++++|..|..+..|.|-+++|
T Consensus 72 dqIReL~~~l~~~p~~g~~KViII~~ae~mt------------~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSR 139 (263)
T PRK06581 72 EQIRKLQDFLSKTSAISGYKVAIIYSAELMN------------LNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSR 139 (263)
T ss_pred HHHHHHHHHHhhCcccCCcEEEEEechHHhC------------HHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhc
Confidence 34454444333 22235799999999993 3456899999999999999999999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhcc
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKF 133 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~ 133 (242)
+. .+.|+.|....-.+.+..++...
T Consensus 140 Cq-~i~~~~p~~~~~~e~~~~~~~p~ 164 (263)
T PRK06581 140 CF-KINVRSSILHAYNELYSQFIQPI 164 (263)
T ss_pred eE-EEeCCCCCHHHHHHHHHHhcccc
Confidence 96 89999999988888888877654
No 197
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.32 E-value=0.012 Score=49.31 Aligned_cols=144 Identities=19% Similarity=0.219 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHh-ccCCC--CeEEEEecC-CcccccHHHh
Q psy4165 30 VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT-GEQSD--KFMLVLASN-TPQQFDWAVN 105 (242)
Q Consensus 30 e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l-~~~~~--~v~vI~tTn-~~~~ld~al~ 105 (242)
++.-+.+....++..+|.++++||.+.+... .-..+. ++..+ +..++ +|++||=.. ++.---+.+.
T Consensus 116 e~~~~~L~al~~~g~r~v~l~vdEah~L~~~---------~le~Lr-ll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~ 185 (269)
T COG3267 116 EQIDRELAALVKKGKRPVVLMVDEAHDLNDS---------ALEALR-LLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLR 185 (269)
T ss_pred HHHHHHHHHHHHhCCCCeEEeehhHhhhChh---------HHHHHH-HHHhhcccccCceeeeecCCcccchhhchHHHH
Confidence 4455555666666666899999999998531 222222 22233 23333 367776431 1111122333
Q ss_pred ---cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy4165 106 ---DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 106 ---~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~ 182 (242)
.|++..|++++-+.++-...+++.|+.-+.. .+=++ +..+..+...+.| .|.-|.++|..|.-++
T Consensus 186 e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~----------~~l~~-~~a~~~i~~~sqg-~P~lin~~~~~Al~~a 253 (269)
T COG3267 186 ELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLP----------EPLFS-DDALLLIHEASQG-IPRLINNLATLALDAA 253 (269)
T ss_pred hhhheEEEEEecCCcChHHHHHHHHHHHhccCCC----------cccCC-hhHHHHHHHHhcc-chHHHHHHHHHHHHHH
Confidence 6999889999999999999999999763111 11122 4455778888888 7899999999888888
Q ss_pred hhhcCCCccHHHH
Q psy4165 183 YASEDGVLTEAMV 195 (242)
Q Consensus 183 ~~~~~~~~~~~~~ 195 (242)
+...++.++...+
T Consensus 254 ~~a~~~~v~~a~~ 266 (269)
T COG3267 254 YSAGEDGVSEAEI 266 (269)
T ss_pred HHcCCCccchhhc
Confidence 8888877776654
No 198
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.29 E-value=0.0032 Score=60.16 Aligned_cols=172 Identities=11% Similarity=0.103 Sum_probs=85.5
Q ss_pred ChHHHHHHhcC---CcEEEEecCCcccccchHHHHHHHHHHHH-----------HhCCCcEEEEEecccccccccCCCcc
Q psy4165 1 MFAKKLAHHSG---MDYAIMTGGDVAPMGSSGVTAIHKVFDWA-----------SSSRKGLVLFIDEADAFLRKRSSETI 66 (242)
Q Consensus 1 llA~aiA~e~~---~~~~~v~~~~l~~~~g~~e~~l~~~f~~A-----------~~~~~p~Il~iDeiD~l~~~r~~~~~ 66 (242)
++|++|-..+. .||+.++|+.+-. +..-.++|-.. -..+.+..|||||||.+-
T Consensus 363 ~~A~~ih~~s~r~~~pfv~vnc~~~~~-----~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~-------- 429 (638)
T PRK11388 363 LLAQAIHNESERAAGPYIAVNCQLYPD-----EALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLS-------- 429 (638)
T ss_pred HHHHHHHHhCCccCCCeEEEECCCCCh-----HHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCC--------
Confidence 47888877644 6999999988732 11112233211 001126889999999983
Q ss_pred chHHHHHHHHHHHHhc--cCC------CCeEEEEecCCcccccHHHh-ccc---------ccEEEeCCCC--HHHHHHHH
Q psy4165 67 SESLRATLNAFLYRTG--EQS------DKFMLVLASNTPQQFDWAVN-DRL---------DEMVEFPLPT--LNERERLV 126 (242)
Q Consensus 67 ~~~~~~~l~~lL~~l~--~~~------~~v~vI~tTn~~~~ld~al~-~Rf---------d~~i~~~~P~--~~~R~~Il 126 (242)
...+..+..+|..=. ..+ -.+-+|+|||.. +...+. ++| ...|++|+.. .++...++
T Consensus 430 -~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~--l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~ 506 (638)
T PRK11388 430 -PELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD--LAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALV 506 (638)
T ss_pred -HHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC--HHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHH
Confidence 333434444442210 001 146788888853 222222 444 3344444431 14455677
Q ss_pred HHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 127 RLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
+.++.++.... +... .+. ...+..|....=--+.++|++++. .++.....+.++.+++-..+
T Consensus 507 ~~~l~~~~~~~------~~~~-~~s-~~a~~~L~~y~WPGNvreL~~~l~---~~~~~~~~~~i~~~~lp~~~ 568 (638)
T PRK11388 507 NNKLRSLEKRF------STRL-KID-DDALARLVSYRWPGNDFELRSVIE---NLALSSDNGRIRLSDLPEHL 568 (638)
T ss_pred HHHHHHHHHHh------CCCC-CcC-HHHHHHHHcCCCCChHHHHHHHHH---HHHHhCCCCeecHHHCchhh
Confidence 77877642211 1111 122 222233433321124455555554 44433445577777765544
No 199
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.27 E-value=0.0065 Score=57.31 Aligned_cols=178 Identities=13% Similarity=0.069 Sum_probs=105.2
Q ss_pred hHHHHHHhcC--CcEEEEecCCccc-ccc--hHHHHHHH---HHH---HHHhCCCcEEEEEecccccccccCCCccchHH
Q psy4165 2 FAKKLAHHSG--MDYAIMTGGDVAP-MGS--SGVTAIHK---VFD---WASSSRKGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 2 lA~aiA~e~~--~~~~~v~~~~l~~-~~g--~~e~~l~~---~f~---~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
++++++.-+. +||..+..+.-.. .+| +-+..|+. +|+ .+..+ ..|||+||+..+-
T Consensus 41 ~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah--~GvL~lDe~n~~~------------ 106 (584)
T PRK13406 41 WLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD--GGVLVLAMAERLE------------ 106 (584)
T ss_pred HHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc--CCEEEecCcccCC------------
Confidence 5667776654 4777765443322 122 22333211 111 11222 4799999998883
Q ss_pred HHHHHHHHHHhcc-------------CCCCeEEEEecCCc---ccccHHHhcccccEEEeCCCCHHHHH-------HHHH
Q psy4165 71 RATLNAFLYRTGE-------------QSDKFMLVLASNTP---QQFDWAVNDRLDEMVEFPLPTLNERE-------RLVR 127 (242)
Q Consensus 71 ~~~l~~lL~~l~~-------------~~~~v~vI~tTn~~---~~ld~al~~Rfd~~i~~~~P~~~~R~-------~Il~ 127 (242)
..++..|+.-|+. +..++++|+|-|.. ..|+++++.||+..+.++.|+..+-. +|.+
T Consensus 107 ~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~ 186 (584)
T PRK13406 107 PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDAREIPIDADDIAA 186 (584)
T ss_pred HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHH
Confidence 3466777777742 23467888864322 45999999999999999998765432 2221
Q ss_pred HHHhccccchhhhcccccccCCCChhHhHHHHHHhC--CCC-CHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Q psy4165 128 LYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT--EGL-SGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 128 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t--~g~-s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~ 204 (242)
..- .+ .+..++ +..+..++..+ -|. |.+---.+++.|++.+.-.++..++.+|+.+++.-++.
T Consensus 187 AR~-rl---------~~v~v~----~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL~ 252 (584)
T PRK13406 187 ARA-RL---------PAVGPP----PEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVLA 252 (584)
T ss_pred HHH-HH---------ccCCCC----HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 111 00 011122 22223333322 255 77777778887777777788889999999999988875
Q ss_pred hhh
Q psy4165 205 AHK 207 (242)
Q Consensus 205 ~~~ 207 (242)
...
T Consensus 253 hR~ 255 (584)
T PRK13406 253 PRA 255 (584)
T ss_pred hhc
Confidence 433
No 200
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.25 E-value=0.0036 Score=56.86 Aligned_cols=165 Identities=18% Similarity=0.244 Sum_probs=80.0
Q ss_pred hHHHHHHh---cCCcEEEEecCCcccccchHHHHHHH-HHHHH---------------HhCCCcEEEEEecccccccccC
Q psy4165 2 FAKKLAHH---SGMDYAIMTGGDVAPMGSSGVTAIHK-VFDWA---------------SSSRKGLVLFIDEADAFLRKRS 62 (242)
Q Consensus 2 lA~aiA~e---~~~~~~~v~~~~l~~~~g~~e~~l~~-~f~~A---------------~~~~~p~Il~iDeiD~l~~~r~ 62 (242)
+|+++-.. .+.||+.++|+.+.. ..+.. +|... .... +..|||||||.+..
T Consensus 178 ~a~~ih~~s~~~~~~~i~~~c~~~~~------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~-~gtl~ldei~~l~~--- 247 (441)
T PRK10365 178 VARAIHASSARSEKPLVTLNCAALNE------SLLESELFGHEKGAFTGADKRREGRFVEAD-GGTLFLDEIGDISP--- 247 (441)
T ss_pred HHHHHHHcCCCCCCCeeeeeCCCCCH------HHHHHHhcCCCCCCcCCCCcCCCCceeECC-CCEEEEeccccCCH---
Confidence 56666543 346999999987632 11211 22110 1122 68899999999943
Q ss_pred CCccchHHHHHHHHHHHHhccC-----------CCCeEEEEecCCcccccHHHh-ccccc-------EEEeCCCCHH---
Q psy4165 63 SETISESLRATLNAFLYRTGEQ-----------SDKFMLVLASNTPQQFDWAVN-DRLDE-------MVEFPLPTLN--- 120 (242)
Q Consensus 63 ~~~~~~~~~~~l~~lL~~l~~~-----------~~~v~vI~tTn~~~~ld~al~-~Rfd~-------~i~~~~P~~~--- 120 (242)
..+ ..++..++.. ...+-+|+||+.. +...+. ++|.. .+.+..|...
T Consensus 248 ------~~q---~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~--~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~ 316 (441)
T PRK10365 248 ------MMQ---VRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD--LAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRR 316 (441)
T ss_pred ------HHH---HHHHHHHccCcEEeCCCCceeeeceEEEEeCCCC--HHHHHHcCCchHHHHHHhccceecCCChhhcc
Confidence 222 3333333211 1235678777653 222222 55522 3444445444
Q ss_pred -HHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q psy4165 121 -ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMS 197 (242)
Q Consensus 121 -~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~ 197 (242)
+...+++.++.++.... +.....++ ...+..|... .| |++++.|-+..+.++.......++.+++..
T Consensus 317 ~Di~~l~~~~l~~~~~~~------~~~~~~~~-~~a~~~L~~~--~w-pgN~reL~~~~~~~~~~~~~~~i~~~~l~~ 384 (441)
T PRK10365 317 EDIPLLAGHFLQRFAERN------RKAVKGFT-PQAMDLLIHY--DW-PGNIRELENAVERAVVLLTGEYISERELPL 384 (441)
T ss_pred hhHHHHHHHHHHHHHHHh------CCCCCCcC-HHHHHHHHhC--CC-CCHHHHHHHHHHHHHHhCCCCccchHhCch
Confidence 44557777776542211 11111122 2222333333 22 444444444334444444555677666643
No 201
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.24 E-value=0.0065 Score=56.31 Aligned_cols=144 Identities=20% Similarity=0.205 Sum_probs=82.5
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHH--h--c------cCCCCeEEEEecCCc-----c------------
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYR--T--G------EQSDKFMLVLASNTP-----Q------------ 98 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~--l--~------~~~~~v~vI~tTn~~-----~------------ 98 (242)
..+|||||++.+- ......+.+.|.. + . ....++.+|++||.- .
T Consensus 296 ~GvLfLDEi~e~~---------~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~ 366 (499)
T TIGR00368 296 NGVLFLDELPEFK---------RSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQ 366 (499)
T ss_pred CCeEecCChhhCC---------HHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHH
Confidence 5899999999873 2233333333321 0 0 123468899999852 1
Q ss_pred ------cccHHHhcccccEEEeCCCCHHH-------------HHHHHHHHHh---ccc------cchhhhcc---ccccc
Q psy4165 99 ------QFDWAVNDRLDEMVEFPLPTLNE-------------RERLVRLYFD---KFV------LQPAAQGK---RRLKV 147 (242)
Q Consensus 99 ------~ld~al~~Rfd~~i~~~~P~~~~-------------R~~Il~~~l~---~~~------~~~~~~~~---~~~~~ 147 (242)
.|...|+.|||..++++.++.++ |.++.+..-. ++. .+..-.+. ....+
T Consensus 367 ~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l 446 (499)
T TIGR00368 367 ISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKL 446 (499)
T ss_pred HHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCC
Confidence 58899999999999999775432 2333322111 110 00000000 00001
Q ss_pred CCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 148 APFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 148 ~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
++ .....++....+. ++|.+-...+++-|...+--.....++.+|+.+|+.
T Consensus 447 ~~-~~~~~l~~a~~~~-~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 447 SA-IDANDLEGALNKL-GLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred CH-HHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 11 0011233444443 589999999999776666666777899999999874
No 202
>KOG2035|consensus
Probab=97.21 E-value=0.033 Score=47.46 Aligned_cols=135 Identities=20% Similarity=0.231 Sum_probs=91.2
Q ss_pred EEEecCCcccccchHHHHHHHHHHHHHhCC--------CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCC
Q psy4165 15 AIMTGGDVAPMGSSGVTAIHKVFDWASSSR--------KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSD 86 (242)
Q Consensus 15 ~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~--------~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~ 86 (242)
+++++++...+ ..-.++++..+..+.. .=-+++|-|.|.+.. .....|=.-|+.+.+
T Consensus 92 lEitPSDaG~~---DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~------------dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 92 LEITPSDAGNY---DRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR------------DAQHALRRTMEKYSS 156 (351)
T ss_pred EEeChhhcCcc---cHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH------------HHHHHHHHHHHHHhc
Confidence 45666665332 2334566655444332 126899999999943 222334444667788
Q ss_pred CeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCC
Q psy4165 87 KFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGL 166 (242)
Q Consensus 87 ~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~ 166 (242)
.+-+|...|....|-+++++|.- .|.+|.|+.++...++...+++-++. +. ...+..+|+.
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl-~iRvpaps~eeI~~vl~~v~~kE~l~----------lp----~~~l~rIa~k---- 217 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCL-FIRVPAPSDEEITSVLSKVLKKEGLQ----------LP----KELLKRIAEK---- 217 (351)
T ss_pred CceEEEEecCcccchhHHhhhee-EEeCCCCCHHHHHHHHHHHHHHhccc----------Cc----HHHHHHHHHH----
Confidence 88899999999999999998874 89999999999999999999874332 22 2234667766
Q ss_pred CHHHHHHHHHHHHHHHh
Q psy4165 167 SGREIAKLGVAWQASAY 183 (242)
Q Consensus 167 s~adi~~lv~~a~~~~~ 183 (242)
|+++++..+-..++...
T Consensus 218 S~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 218 SNRNLRRALLMLEAVRV 234 (351)
T ss_pred hcccHHHHHHHHHHHHh
Confidence 66788877654444443
No 203
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.19 E-value=0.0032 Score=57.42 Aligned_cols=165 Identities=17% Similarity=0.261 Sum_probs=85.9
Q ss_pred ChHHHHHHhcC---CcEEEEecCCcccccchHHHHHHH-HHHHHH-------h-------CCCcEEEEEecccccccccC
Q psy4165 1 MFAKKLAHHSG---MDYAIMTGGDVAPMGSSGVTAIHK-VFDWAS-------S-------SRKGLVLFIDEADAFLRKRS 62 (242)
Q Consensus 1 llA~aiA~e~~---~~~~~v~~~~l~~~~g~~e~~l~~-~f~~A~-------~-------~~~p~Il~iDeiD~l~~~r~ 62 (242)
++||+|=.... -||+.++|+.+-. ..+.. +|-..+ . .+.+..||+|||..+-
T Consensus 179 lvAr~IH~~S~R~~~PFVavNcaAip~------~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mp---- 248 (464)
T COG2204 179 LVARAIHQASPRAKGPFIAVNCAAIPE------NLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMP---- 248 (464)
T ss_pred HHHHHHHhhCcccCCCceeeecccCCH------HHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCC----
Confidence 46777766654 4999999988742 11211 232111 1 1126899999998873
Q ss_pred CCccchHHHHHHHHHHHHh-----c---cCCCCeEEEEecCCcccccHHHh-cccc-------cEEEeCCCCH----HHH
Q psy4165 63 SETISESLRATLNAFLYRT-----G---EQSDKFMLVLASNTPQQFDWAVN-DRLD-------EMVEFPLPTL----NER 122 (242)
Q Consensus 63 ~~~~~~~~~~~l~~lL~~l-----~---~~~~~v~vI~tTn~~~~ld~al~-~Rfd-------~~i~~~~P~~----~~R 122 (242)
-..+.-+..+|++= + ..+-.|=||++||+ +|...+. |+|- .++.+..|.. ++.
T Consensus 249 -----l~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~--dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDI 321 (464)
T COG2204 249 -----LELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNR--DLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDI 321 (464)
T ss_pred -----HHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCc--CHHHHHHcCCcHHHHHhhhccceecCCcccccchhH
Confidence 33333333333321 1 11224779999996 4555555 5552 1455555644 444
Q ss_pred HHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCC-CC--CHHHHHHHHHHHHHHHhhhcCCCccHHHH
Q psy4165 123 ERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE-GL--SGREIAKLGVAWQASAYASEDGVLTEAMV 195 (242)
Q Consensus 123 ~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~-g~--s~adi~~lv~~a~~~~~~~~~~~~~~~~~ 195 (242)
--++++|+.+..... +.....++- +.++..+. .| +.++|+|++ +.++.-.....++.+++
T Consensus 322 p~L~~hfl~~~~~~~------~~~~~~~s~----~a~~~L~~y~WPGNVREL~N~v---er~~il~~~~~i~~~~l 384 (464)
T COG2204 322 PLLAEHFLKRFAAEL------GRPPKGFSP----EALAALLAYDWPGNVRELENVV---ERAVILSEGPEIEVEDL 384 (464)
T ss_pred HHHHHHHHHHHHHHc------CCCCCCCCH----HHHHHHHhCCCChHHHHHHHHH---HHHHhcCCccccchhhc
Confidence 557777777653321 222333442 34444443 22 345555555 44444444444444443
No 204
>KOG1942|consensus
Probab=97.18 E-value=0.008 Score=51.52 Aligned_cols=148 Identities=17% Similarity=0.089 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHHHH-hCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecC----------
Q psy4165 27 SSGVTAIHKVFDWAS-SSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASN---------- 95 (242)
Q Consensus 27 g~~e~~l~~~f~~A~-~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn---------- 95 (242)
|+..+.+.+..++.- +.- |.||||||++-| .-..++.|-..++..-.+ +||++||
T Consensus 278 ~eiNkvVn~Yid~GvAElv-PGVLFIDEVhML------------DiEcFTyL~kalES~iaP-ivifAsNrG~~~irGt~ 343 (456)
T KOG1942|consen 278 GEINKVVNKYIDQGVAELV-PGVLFIDEVHML------------DIECFTYLHKALESPIAP-IVIFASNRGMCTIRGTE 343 (456)
T ss_pred HHHHHHHHHHHhcchhhhc-CcceEeeehhhh------------hhHHHHHHHHHhcCCCCc-eEEEecCCcceeecCCc
Confidence 344444444444322 233 999999999877 233455555555544444 5566666
Q ss_pred ---CcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHH
Q psy4165 96 ---TPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIA 172 (242)
Q Consensus 96 ---~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~ 172 (242)
.|..+++.++.|.- +|..-+.+.++-++|++.-.+-- ++.+++ ..+..++..-..-|-+-.-
T Consensus 344 d~~sPhGip~dllDRl~-Iirt~~y~~~e~r~Ii~~Ra~~E----------~l~~~e----~a~~~l~~~gt~tsLRy~v 408 (456)
T KOG1942|consen 344 DILSPHGIPPDLLDRLL-IIRTLPYDEEEIRQIIKIRAQVE----------GLQVEE----EALDLLAEIGTSTSLRYAV 408 (456)
T ss_pred CCCCCCCCCHHHhhhee-EEeeccCCHHHHHHHHHHHHhhh----------cceecH----HHHHHHHhhccchhHHHHH
Confidence 47789999998885 66666667778888888776542 222222 2224455553323333333
Q ss_pred HHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 173 KLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 173 ~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
.|+.-+...+-...+..+..+++++.-.-+.
T Consensus 409 qLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~ 439 (456)
T KOG1942|consen 409 QLLTPASILAKTNGRKEISVEDVEEVTELFL 439 (456)
T ss_pred HhcCHHHHHHHHcCCceeecccHHHHHHHHH
Confidence 3332222223334455677777777655554
No 205
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.0047 Score=54.19 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.+... ++.-|++||++|.+- ....+.||+.+++...++.+|.+|+.++.+.+.+.+
T Consensus 95 id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld------------~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 95 IDAVREIIDNVYLTSVRGGLRVILIHPAESMN------------LQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHHHHHhhCcccCCceEEEEechhhCC------------HHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHH
Confidence 45567766666532 224689999999983 234566777776555567788899999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHH
Q psy4165 107 RLDEMVEFPLPTLNERERLVRL 128 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~ 128 (242)
|+. .+.|++|+.++-.+.|+.
T Consensus 163 Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hhh-hhcCCCCCHHHHHHHHHh
Confidence 996 889999999987776654
No 206
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.14 E-value=0.011 Score=54.03 Aligned_cols=172 Identities=15% Similarity=0.170 Sum_probs=84.5
Q ss_pred hHHHHHHh---cCCcEEEEecCCcccccchHHHHHHHHHHHHH--------------hCCCcEEEEEecccccccccCCC
Q psy4165 2 FAKKLAHH---SGMDYAIMTGGDVAPMGSSGVTAIHKVFDWAS--------------SSRKGLVLFIDEADAFLRKRSSE 64 (242)
Q Consensus 2 lA~aiA~e---~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~--------------~~~~p~Il~iDeiD~l~~~r~~~ 64 (242)
+|+++... .+.||+.++|..+... ..-..+|-..+ ..+.+.+|||||+|.+-.
T Consensus 182 lA~~ih~~s~~~~~~~~~i~c~~~~~~-----~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~----- 251 (457)
T PRK11361 182 IARAIHYNSRRAKGPFIKVNCAALPES-----LLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPL----- 251 (457)
T ss_pred HHHHHHHhCCCCCCCeEEEECCCCCHH-----HHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCH-----
Confidence 67777554 4469999999887321 11111221100 011257899999999942
Q ss_pred ccchHHHHHHHHHHHHhc--------cCCCCeEEEEecCCcc-------cccHHHhcccccEEEeCCCCHHHHH----HH
Q psy4165 65 TISESLRATLNAFLYRTG--------EQSDKFMLVLASNTPQ-------QFDWAVNDRLDEMVEFPLPTLNERE----RL 125 (242)
Q Consensus 65 ~~~~~~~~~l~~lL~~l~--------~~~~~v~vI~tTn~~~-------~ld~al~~Rfd~~i~~~~P~~~~R~----~I 125 (242)
.....+..+|..-. ....++-+|+|||..- .+.+.+.-|+. .+.+..|...+|. .+
T Consensus 252 ----~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~-~~~i~~ppLreR~~di~~l 326 (457)
T PRK11361 252 ----VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLN-VIHLILPPLRDRREDISLL 326 (457)
T ss_pred ----HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-cceecCCChhhchhhHHHH
Confidence 23333333332211 0112478889888542 23344444443 3555656555554 46
Q ss_pred HHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 126 VRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 126 l~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
+..++.++.... +.....++ ...+..|....=--+.++|++++. .++.....+.++.+++-..
T Consensus 327 ~~~~l~~~~~~~------~~~~~~~~-~~a~~~L~~~~wpgNv~eL~~~~~---~~~~~~~~~~i~~~~l~~~ 389 (457)
T PRK11361 327 ANHFLQKFSSEN------QRDIIDID-PMAMSLLTAWSWPGNIRELSNVIE---RAVVMNSGPIIFSEDLPPQ 389 (457)
T ss_pred HHHHHHHHHHHc------CCCCCCcC-HHHHHHHHcCCCCCcHHHHHHHHH---HHHHhCCCCcccHHHChHh
Confidence 667776642210 11111222 222234444321124566666664 3444444556777766433
No 207
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.13 E-value=0.0035 Score=51.24 Aligned_cols=118 Identities=14% Similarity=0.276 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHhCCCcEEEEEecccccc-cccCCCccchHHHHHHHHHHHHhcc--CCCCeEEEEecCCccccc---
Q psy4165 28 SGVTAIHKVFDWASSSRKGLVLFIDEADAFL-RKRSSETISESLRATLNAFLYRTGE--QSDKFMLVLASNTPQQFD--- 101 (242)
Q Consensus 28 ~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~-~~r~~~~~~~~~~~~l~~lL~~l~~--~~~~v~vI~tTn~~~~ld--- 101 (242)
.....+..++........+.||+|||+|.+. .... ....+..|...++. ...++.+|.+++......
T Consensus 101 ~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~ 173 (234)
T PF01637_consen 101 DSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE-------DKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFL 173 (234)
T ss_dssp G-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT-------THHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc-------hHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhh
Confidence 3456778888887776546999999999998 2221 12333444444432 233444444443322222
Q ss_pred ---HHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCC
Q psy4165 102 ---WAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGL 166 (242)
Q Consensus 102 ---~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~ 166 (242)
..+.+|+.. +++++-+.++..++++..+.+. . .+ ..+ +..++.+...|.|.
T Consensus 174 ~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~----------~~-~~~-~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 174 DDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-I----------KL-PFS-DEDIEEIYSLTGGN 227 (234)
T ss_dssp -TTSTTTT---E-EEE----HHHHHHHHHHHHHCC-------------------HHHHHHHHHHHTT-
T ss_pred cccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-h----------cc-cCC-HHHHHHHHHHhCCC
Confidence 234488886 9999999999999999988753 1 11 111 44457788888764
No 208
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.12 E-value=0.0077 Score=57.29 Aligned_cols=160 Identities=9% Similarity=0.043 Sum_probs=88.1
Q ss_pred hHHHHHHhcCCcEEE-EecCC-------------ccc---ccchHHHHHHHHHHHHHh---------CCCcEEEEEeccc
Q psy4165 2 FAKKLAHHSGMDYAI-MTGGD-------------VAP---MGSSGVTAIHKVFDWASS---------SRKGLVLFIDEAD 55 (242)
Q Consensus 2 lA~aiA~e~~~~~~~-v~~~~-------------l~~---~~g~~e~~l~~~f~~A~~---------~~~p~Il~iDeiD 55 (242)
+++++|++++..++. +++.. +.. .+......++.++..+.. ..+..||||||+|
T Consensus 126 l~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiP 205 (637)
T TIGR00602 126 TIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLP 205 (637)
T ss_pred HHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecch
Confidence 688899988876544 22111 001 111234456666666652 1236899999999
Q ss_pred ccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecC-Ccc--------c------ccHHHhc--ccccEEEeCCCC
Q psy4165 56 AFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASN-TPQ--------Q------FDWAVND--RLDEMVEFPLPT 118 (242)
Q Consensus 56 ~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn-~~~--------~------ld~al~~--Rfd~~i~~~~P~ 118 (242)
.++.. . ...+..+|.+.-...+.+.+|++++ .+. . |.++++. |.. +|.|++.+
T Consensus 206 n~~~r-~--------~~~lq~lLr~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia 275 (637)
T TIGR00602 206 NQFYR-D--------TRALHEILRWKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIA 275 (637)
T ss_pred hhchh-h--------HHHHHHHHHHHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCC
Confidence 98642 1 1133444442211233344444333 221 1 3367774 554 89999999
Q ss_pred HHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy4165 119 LNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 119 ~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~ 182 (242)
...-...|+..+.+...... ....+.-...+..|+. .+.+|++.+++..+.++
T Consensus 276 ~t~l~K~L~rIl~~E~~~~~-------~~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 276 PTIMKKFLNRIVTIEAKKNG-------EKIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSS 328 (637)
T ss_pred HHHHHHHHHHHHHhhhhccc-------cccccCCHHHHHHHHH----hCCChHHHHHHHHHHHH
Confidence 99988888888875211100 0000111223455655 57789999998666553
No 209
>KOG2680|consensus
Probab=97.08 E-value=0.015 Score=50.04 Aligned_cols=130 Identities=17% Similarity=0.193 Sum_probs=84.2
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHH-hccCCCCeEEEEecC------------CcccccHHHhcccccEE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYR-TGEQSDKFMLVLASN------------TPQQFDWAVNDRLDEMV 112 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~-l~~~~~~v~vI~tTn------------~~~~ld~al~~Rfd~~i 112 (242)
|.||||||++-|- -..++ ||+. +++.-.+ ++|++|| .|..||-.|+.|.- .|
T Consensus 289 pGVLFIDEvHMLD------------IEcFs-FlNrAlE~d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lDR~l-II 353 (454)
T KOG2680|consen 289 PGVLFIDEVHMLD------------IECFS-FLNRALENDMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLDRML-II 353 (454)
T ss_pred cceEEEeeehhhh------------hHHHH-HHHHHhhhccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhhhhh-ee
Confidence 8999999998772 12222 3333 3433334 5555665 47789999998874 78
Q ss_pred EeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh-HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCcc
Q psy4165 113 EFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT-SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLT 191 (242)
Q Consensus 113 ~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~-~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~ 191 (242)
...+.+.++-+.||+.-... +++.++ ..++.|...-..-|-+---+|+..+...+...+...+.
T Consensus 354 ~t~py~~~d~~~IL~iRc~E---------------Edv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~ 418 (454)
T KOG2680|consen 354 STQPYTEEDIKKILRIRCQE---------------EDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVE 418 (454)
T ss_pred ecccCcHHHHHHHHHhhhhh---------------hccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceee
Confidence 88888999999999987654 222221 22344444444455555556666555555556666888
Q ss_pred HHHHHHHHHHHHHh
Q psy4165 192 EAMVMSKVEDSIRA 205 (242)
Q Consensus 192 ~~~~~~a~~~~~~~ 205 (242)
.+|+..+..-++..
T Consensus 419 ~~di~r~y~LFlD~ 432 (454)
T KOG2680|consen 419 VDDIERVYRLFLDE 432 (454)
T ss_pred hhHHHHHHHHHhhh
Confidence 89999988777654
No 210
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.01 E-value=0.015 Score=53.31 Aligned_cols=172 Identities=13% Similarity=0.108 Sum_probs=89.7
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHH---------------hCCCcEEEEEecccccccccCC
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWAS---------------SSRKGLVLFIDEADAFLRKRSS 63 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~---------------~~~~p~Il~iDeiD~l~~~r~~ 63 (242)
+|++|.... +.||+.++|+.+.. +..-..+|-..+ ... +..|||||+|.+-
T Consensus 177 lA~~ih~~s~~~~~~~i~i~c~~~~~-----~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~-~Gtl~l~~i~~l~----- 245 (469)
T PRK10923 177 VAHALHRHSPRAKAPFIALNMAAIPK-----DLIESELFGHEKGAFTGANTIRQGRFEQAD-GGTLFLDEIGDMP----- 245 (469)
T ss_pred HHHHHHhcCCCCCCCeEeeeCCCCCH-----HHHHHHhcCCCCCCCCCCCcCCCCCeeECC-CCEEEEeccccCC-----
Confidence 677777664 46999999988732 111122222110 112 5678999999984
Q ss_pred CccchHHHHHHHHHHHHhc-----c---CCCCeEEEEecCCc-------ccccHHHhccc-ccEEEeCCC--CHHHHHHH
Q psy4165 64 ETISESLRATLNAFLYRTG-----E---QSDKFMLVLASNTP-------QQFDWAVNDRL-DEMVEFPLP--TLNERERL 125 (242)
Q Consensus 64 ~~~~~~~~~~l~~lL~~l~-----~---~~~~v~vI~tTn~~-------~~ld~al~~Rf-d~~i~~~~P--~~~~R~~I 125 (242)
......+..+|..-. . ....+-+|+||+.. ..+.+.|..|| ...|++|+. -.++...|
T Consensus 246 ----~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l 321 (469)
T PRK10923 246 ----LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRL 321 (469)
T ss_pred ----HHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHH
Confidence 223333334433211 0 01235788888653 23455666666 455555544 23556668
Q ss_pred HHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 126 VRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 126 l~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
+++|+.+..... +.....+. ...+..|....=--+.++|++++. .++.....+.++.+++-..
T Consensus 322 ~~~~l~~~~~~~------~~~~~~~~-~~a~~~L~~~~wpgNv~eL~~~i~---~~~~~~~~~~i~~~~l~~~ 384 (469)
T PRK10923 322 ARHFLQVAAREL------GVEAKLLH-PETEAALTRLAWPGNVRQLENTCR---WLTVMAAGQEVLIQDLPGE 384 (469)
T ss_pred HHHHHHHHHHHc------CCCCCCcC-HHHHHHHHhCCCCChHHHHHHHHH---HHHHhCCCCcccHHHCcHh
Confidence 888887642211 11111222 223355555532235667777775 4444444556777776433
No 211
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.00 E-value=0.011 Score=55.32 Aligned_cols=120 Identities=18% Similarity=0.235 Sum_probs=63.4
Q ss_pred ChHHHHHHhc---CCcEEEEecCCccccc------chHH-------HHHHHHHHHHHhCCCcEEEEEecccccccccCCC
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMG------SSGV-------TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE 64 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~------g~~e-------~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~ 64 (242)
++|++|-..+ +.||+.++|+.+-... |... ..-..+|+.|. +..|||||||.+-
T Consensus 242 ~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~----~GtL~LdeI~~L~------ 311 (520)
T PRK10820 242 LLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQAN----GGSVLLDEIGEMS------ 311 (520)
T ss_pred HHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcC----CCEEEEeChhhCC------
Confidence 4788864443 3599999998874211 1000 00011233322 5789999999993
Q ss_pred ccchHHHHHHHHHHHHh-----c---cCCCCeEEEEecCCcc-------cccHHHhcccc-cEEEeCCCC--HHHHHHHH
Q psy4165 65 TISESLRATLNAFLYRT-----G---EQSDKFMLVLASNTPQ-------QFDWAVNDRLD-EMVEFPLPT--LNERERLV 126 (242)
Q Consensus 65 ~~~~~~~~~l~~lL~~l-----~---~~~~~v~vI~tTn~~~-------~ld~al~~Rfd-~~i~~~~P~--~~~R~~Il 126 (242)
...+..+..+|+.- + .....+-+|+||+..- .+.+.|..|+. ..|++|+.. .++...++
T Consensus 312 ---~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~ 388 (520)
T PRK10820 312 ---PRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLT 388 (520)
T ss_pred ---HHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHH
Confidence 33444444454331 1 0122467888876542 24455666654 445554442 23455566
Q ss_pred HHHHhcc
Q psy4165 127 RLYFDKF 133 (242)
Q Consensus 127 ~~~l~~~ 133 (242)
++|+.++
T Consensus 389 ~~fl~~~ 395 (520)
T PRK10820 389 ELFVARF 395 (520)
T ss_pred HHHHHHH
Confidence 6777654
No 212
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.02 Score=46.48 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccc
Q psy4165 30 VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLD 109 (242)
Q Consensus 30 e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd 109 (242)
...++++.+.+.-.....-++|+++|.+. ....|.||+-+++.+.++++|..|..+..+.|.+++|+.
T Consensus 39 Vd~iReii~~~~~~~~~~k~iI~~a~~l~------------~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~ 106 (206)
T PRK08485 39 IEDAKEVIAEAYIAESEEKIIVIAAPSYG------------IEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLI 106 (206)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEEchHhhC------------HHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhhe
Confidence 34566666655432212334578888873 346789999999999999999999999999999998886
Q ss_pred c------------EEEeCCCCHHHHHHHHHH
Q psy4165 110 E------------MVEFPLPTLNERERLVRL 128 (242)
Q Consensus 110 ~------------~i~~~~P~~~~R~~Il~~ 128 (242)
. .+.+...+.++-.+.++.
T Consensus 107 ~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 107 IEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred eccccccccccccccccCCCCHHHHHHHHHH
Confidence 3 467778888888888877
No 213
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=96.96 E-value=0.011 Score=53.92 Aligned_cols=167 Identities=19% Similarity=0.267 Sum_probs=83.3
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchHHHHHH-HHHHHH---------------HhCCCcEEEEEecccccccccC
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIH-KVFDWA---------------SSSRKGLVLFIDEADAFLRKRS 62 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~-~~f~~A---------------~~~~~p~Il~iDeiD~l~~~r~ 62 (242)
+|+++-... +.||+.++|+.+.. ..+. .+|-.. .... +..|||||+|.+-
T Consensus 178 lA~~ih~~s~~~~~~~v~v~c~~~~~------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~-~gtl~l~~i~~l~---- 246 (445)
T TIGR02915 178 LARALHQLSDRKDKRFVAINCAAIPE------NLLESELFGYEKGAFTGAVKQTLGKIEYAH-GGTLFLDEIGDLP---- 246 (445)
T ss_pred HHHHHHHhCCcCCCCeEEEECCCCCh------HHHHHHhcCCCCCCcCCCccCCCCceeECC-CCEEEEechhhCC----
Confidence 677776654 46899999988732 1111 122110 0122 6789999999993
Q ss_pred CCccchHHHHHHHHHHHHhc--------cCCCCeEEEEecCCc-------ccccHHHhcccccEEEeCCCCHHHHH----
Q psy4165 63 SETISESLRATLNAFLYRTG--------EQSDKFMLVLASNTP-------QQFDWAVNDRLDEMVEFPLPTLNERE---- 123 (242)
Q Consensus 63 ~~~~~~~~~~~l~~lL~~l~--------~~~~~v~vI~tTn~~-------~~ld~al~~Rfd~~i~~~~P~~~~R~---- 123 (242)
...+..+..+|..-. .....+-+|+||+.. ..+.+.|..|+. .+.+..|...+|.
T Consensus 247 -----~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~lPpLr~R~~Di~ 320 (445)
T TIGR02915 247 -----LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIA-EISITIPPLRSRDGDAV 320 (445)
T ss_pred -----HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhc-cceecCCCchhchhhHH
Confidence 333333344443211 011246788888754 234455554543 3445555555554
Q ss_pred HHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHH
Q psy4165 124 RLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMV 195 (242)
Q Consensus 124 ~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~ 195 (242)
.++++|+.++.... +.....++ ...+..|....=--+.++|++++. .++.......++.+++
T Consensus 321 ~l~~~~l~~~~~~~------~~~~~~~~-~~a~~~L~~~~wpgNvreL~~~i~---~a~~~~~~~~i~~~~l 382 (445)
T TIGR02915 321 LLANAFLERFAREL------KRKTKGFT-DDALRALEAHAWPGNVRELENKVK---RAVIMAEGNQITAEDL 382 (445)
T ss_pred HHHHHHHHHHHHHh------CCCCCCCC-HHHHHHHHhCCCCChHHHHHHHHH---HHHHhCCCCcccHHHc
Confidence 46777776643211 11111222 223344444421134566666665 3333334445655554
No 214
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.95 E-value=0.025 Score=49.67 Aligned_cols=119 Identities=18% Similarity=0.144 Sum_probs=65.4
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccc------cchHH-------HHHHHHHHHHHhCCCcEEEEEecccccccccCCCc
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPM------GSSGV-------TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET 65 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~------~g~~e-------~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~ 65 (242)
+|++|-... +.||+.++|+.+-.. +|... ..-...|..| . +..|||||+|.+-
T Consensus 45 lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a---~-gGtL~l~~i~~L~------- 113 (326)
T PRK11608 45 IASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---D-GGTLFLDELATAP------- 113 (326)
T ss_pred HHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhcc---C-CCeEEeCChhhCC-------
Confidence 677776544 469999999986311 01000 0001112222 2 5789999999993
Q ss_pred cchHHHHHHHHHHHHhc--c------CCCCeEEEEecCCc-------ccccHHHhccc-ccEEEeCCCC--HHHHHHHHH
Q psy4165 66 ISESLRATLNAFLYRTG--E------QSDKFMLVLASNTP-------QQFDWAVNDRL-DEMVEFPLPT--LNERERLVR 127 (242)
Q Consensus 66 ~~~~~~~~l~~lL~~l~--~------~~~~v~vI~tTn~~-------~~ld~al~~Rf-d~~i~~~~P~--~~~R~~Il~ 127 (242)
...+..+..++..-. . ....+-+|+||+.. ..+.+.|..|| ...|++|+.. .++...++.
T Consensus 114 --~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~ 191 (326)
T PRK11608 114 --MLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAE 191 (326)
T ss_pred --HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHH
Confidence 333334444443211 0 01247788888753 34556677777 4466666542 245566777
Q ss_pred HHHhcc
Q psy4165 128 LYFDKF 133 (242)
Q Consensus 128 ~~l~~~ 133 (242)
+|+.++
T Consensus 192 ~fl~~~ 197 (326)
T PRK11608 192 HFAIQM 197 (326)
T ss_pred HHHHHH
Confidence 877654
No 215
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.90 E-value=0.046 Score=50.90 Aligned_cols=156 Identities=15% Similarity=0.123 Sum_probs=77.9
Q ss_pred ChHHHHHHhc---CCcEEEEecCCcccccchHH-------------HHHHHHHHHHHhCCCcEEEEEecccccccccCCC
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMGSSGV-------------TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE 64 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~g~~e-------------~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~ 64 (242)
++|++|-... +.||+.++|+.+-...-+++ ..-...|+.|. +..|||||||.+-
T Consensus 225 ~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~----gGtL~ldeI~~L~------ 294 (509)
T PRK05022 225 LVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELAD----GGTLFLDEIGELP------ 294 (509)
T ss_pred HHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhcC----CCEEEecChhhCC------
Confidence 3688887764 46999999988742110000 00001233222 5779999999993
Q ss_pred ccchHHHHHHHHHHHHhc--------cCCCCeEEEEecCCcc-------cccHHHhcccc-cEEEeCCCC--HHHHHHHH
Q psy4165 65 TISESLRATLNAFLYRTG--------EQSDKFMLVLASNTPQ-------QFDWAVNDRLD-EMVEFPLPT--LNERERLV 126 (242)
Q Consensus 65 ~~~~~~~~~l~~lL~~l~--------~~~~~v~vI~tTn~~~-------~ld~al~~Rfd-~~i~~~~P~--~~~R~~Il 126 (242)
...+..+..+|..-. .....+-+|++||..- .+.+.|..|+. ..|++|+.. .++...++
T Consensus 295 ---~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~ 371 (509)
T PRK05022 295 ---LALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLA 371 (509)
T ss_pred ---HHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHH
Confidence 333333444443211 0112578888887642 23344444443 234554432 24455666
Q ss_pred HHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 127 RLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
++++.++.... +...-.++ ...+..|...-==-+.++|++++.
T Consensus 372 ~~fl~~~~~~~------~~~~~~~s-~~a~~~L~~y~WPGNvrEL~~~i~ 414 (509)
T PRK05022 372 GYFLEQNRARL------GLRSLRLS-PAAQAALLAYDWPGNVRELEHVIS 414 (509)
T ss_pred HHHHHHHHHHc------CCCCCCCC-HHHHHHHHhCCCCCcHHHHHHHHH
Confidence 77776542211 11111222 223344444421136678888886
No 216
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.80 E-value=0.01 Score=52.47 Aligned_cols=72 Identities=24% Similarity=0.345 Sum_probs=47.4
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHH-hccCCCCeEEEEecC------------CcccccHHHhcccccEE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYR-TGEQSDKFMLVLASN------------TPQQFDWAVNDRLDEMV 112 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~-l~~~~~~v~vI~tTn------------~~~~ld~al~~Rfd~~i 112 (242)
|.||||||++-|- -..++ ||+. |+..-. -+||.+|| .|..+|..|+.|+ ..|
T Consensus 279 pGVLFIDEvHmLD------------iEcFs-fLnralEs~~s-PiiIlATNRg~~~irGt~~~sphGiP~DlLDRl-lII 343 (398)
T PF06068_consen 279 PGVLFIDEVHMLD------------IECFS-FLNRALESELS-PIIILATNRGITKIRGTDIISPHGIPLDLLDRL-LII 343 (398)
T ss_dssp E-EEEEESGGGSB------------HHHHH-HHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-EEE
T ss_pred cceEEecchhhcc------------HHHHH-HHHHHhcCCCC-cEEEEecCceeeeccCccCcCCCCCCcchHhhc-EEE
Confidence 8999999999882 12333 4443 443333 37777787 5778999999998 488
Q ss_pred EeCCCCHHHHHHHHHHHHhc
Q psy4165 113 EFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 113 ~~~~P~~~~R~~Il~~~l~~ 132 (242)
...+.+.++-++|++.-...
T Consensus 344 ~t~py~~~ei~~Il~iR~~~ 363 (398)
T PF06068_consen 344 RTKPYSEEEIKQILKIRAKE 363 (398)
T ss_dssp EE----HHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHhhhhh
Confidence 99999999999999998875
No 217
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.77 E-value=0.03 Score=52.30 Aligned_cols=120 Identities=16% Similarity=0.148 Sum_probs=63.7
Q ss_pred ChHHHHHHh---cCCcEEEEecCCccccc------chHH--------HHHHHHHHHHHhCCCcEEEEEecccccccccCC
Q psy4165 1 MFAKKLAHH---SGMDYAIMTGGDVAPMG------SSGV--------TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSS 63 (242)
Q Consensus 1 llA~aiA~e---~~~~~~~v~~~~l~~~~------g~~e--------~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~ 63 (242)
++|++|-+. .+.||+.++|+.+-... |..+ ..-..+|+.|. ...|||||||.+-
T Consensus 250 ~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~----gGTLfLdeI~~Lp----- 320 (526)
T TIGR02329 250 LVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAH----RGTLFLDEIGEMP----- 320 (526)
T ss_pred HHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcC----CceEEecChHhCC-----
Confidence 468888765 34699999998873211 1000 00111233222 5789999999983
Q ss_pred CccchHHHHHHHHHHHHhc-----c---CCCCeEEEEecCCcc-------cccHHHhcccc-cEEEeCCCC--HHHHHHH
Q psy4165 64 ETISESLRATLNAFLYRTG-----E---QSDKFMLVLASNTPQ-------QFDWAVNDRLD-EMVEFPLPT--LNERERL 125 (242)
Q Consensus 64 ~~~~~~~~~~l~~lL~~l~-----~---~~~~v~vI~tTn~~~-------~ld~al~~Rfd-~~i~~~~P~--~~~R~~I 125 (242)
...+..+..+|..-. . ..-.+-+|++||..- .+.+.|.-|+. ..|++|+.. .++...+
T Consensus 321 ----~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L 396 (526)
T TIGR02329 321 ----LPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPL 396 (526)
T ss_pred ----HHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHH
Confidence 333444444443211 0 111346888887542 22223334443 455565542 2456667
Q ss_pred HHHHHhcc
Q psy4165 126 VRLYFDKF 133 (242)
Q Consensus 126 l~~~l~~~ 133 (242)
+.+|+.+.
T Consensus 397 ~~~fl~~~ 404 (526)
T TIGR02329 397 AAEYLVQA 404 (526)
T ss_pred HHHHHHHH
Confidence 78888764
No 218
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.74 E-value=0.033 Score=47.12 Aligned_cols=59 Identities=8% Similarity=0.019 Sum_probs=51.6
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCC
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLP 117 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P 117 (242)
--|++|+++|.+. ....|.||+.+++.+.++++|.+|+.++.|.|.+++|.. .+.|+.+
T Consensus 89 ~KV~II~~ae~m~------------~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq-~~~~~~~ 147 (261)
T PRK05818 89 KKIYIIYGIEKLN------------KQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCV-QYVVLSK 147 (261)
T ss_pred CEEEEeccHhhhC------------HHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhhee-eeecCCh
Confidence 4899999999983 346689999999999999999999999999999999986 5777766
No 219
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=96.74 E-value=0.029 Score=55.08 Aligned_cols=38 Identities=21% Similarity=0.053 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 166 LSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 166 ~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
.|.++|+.+++-++|.|...-...++.+|.+.|+.-+.
T Consensus 768 iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~ 805 (915)
T PTZ00111 768 VSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVK 805 (915)
T ss_pred ccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHH
Confidence 68999999999888888888888999999999987664
No 220
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.70 E-value=0.017 Score=49.77 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=51.3
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCC
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLP 117 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P 117 (242)
--|++||++|.+. ...-|.||+-+++++.++++|..|+.++.|.|.+++|+. .+.|+++
T Consensus 96 ~kv~ii~~ad~mt------------~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq-~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRMT------------LDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSL-SIHIPME 154 (290)
T ss_pred ceEEEEechhhcC------------HHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcce-EEEccch
Confidence 4699999999993 345688999999999999999999999999999999996 7788765
No 221
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=96.63 E-value=0.35 Score=41.43 Aligned_cols=150 Identities=16% Similarity=0.178 Sum_probs=85.6
Q ss_pred CcEEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCe
Q psy4165 12 MDYAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKF 88 (242)
Q Consensus 12 ~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v 88 (242)
+.++.+.++++ ....++..+... .+.-||+|++++.+... .....|+..+...++..
T Consensus 19 ~~~~~~~~~e~---------~~~~l~~~~~~~slf~~~kliii~~~~~~~~~-----------~~~~~L~~~l~~~~~~~ 78 (302)
T TIGR01128 19 FNVFRIDGEEF---------DWNQLLEEAQTLPLFSERRLVELRNPEGKPGA-----------KGLKALEEYLANPPPDT 78 (302)
T ss_pred heeeeeccCCC---------CHHHHHHHhhccCcccCCeEEEEECCCCCCCH-----------HHHHHHHHHHhcCCCCE
Confidence 45566665544 233344554432 23579999999887321 12455666565555566
Q ss_pred EEEEecCCccccc---HHHhc--ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhC
Q psy4165 89 MLVLASNTPQQFD---WAVND--RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT 163 (242)
Q Consensus 89 ~vI~tTn~~~~ld---~al~~--Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t 163 (242)
++|..++.++.-. ..+.. +. ..++++.|+..+....++.++.+.+.. .+ ...++.++..+
T Consensus 79 ~~i~~~~~~~~~~~~~k~~~~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~g~~----------i~----~~a~~~l~~~~ 143 (302)
T TIGR01128 79 LLLIEAPKLDKRKKLTKWLKALKNA-QIVECKTPKEQELPRWIQARLKKLGLR----------ID----PDAVQLLAELV 143 (302)
T ss_pred EEEEecCCCCHhHHHHHHHHHhcCe-eEEEecCCCHHHHHHHHHHHHHHcCCC----------CC----HHHHHHHHHHh
Confidence 6666666433211 12222 44 488899999999999999999874332 22 23346677776
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 164 EGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 164 ~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
.| ....+.+-+. +...++. .+.+|.++++..+.
T Consensus 144 ~~-d~~~l~~el~--KL~~~~~-~~~It~e~I~~~~~ 176 (302)
T TIGR01128 144 EG-NLLAIAQELE--KLALYAP-DGKITLEDVEEAVS 176 (302)
T ss_pred Cc-HHHHHHHHHH--HHHhhCC-CCCCCHHHHHHHHh
Confidence 42 3444444443 3334433 33688888876654
No 222
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.52 E-value=0.1 Score=45.31 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=67.2
Q ss_pred CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHH----------------h-
Q psy4165 43 SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAV----------------N- 105 (242)
Q Consensus 43 ~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al----------------~- 105 (242)
...+-||+|||+|.+-+ +....++. .++.+-.. .++++|.+.++ +.|-.++ +
T Consensus 170 ~~~~iViiIDdLDR~~~--------~~i~~~l~-~ik~~~~~-~~i~~Il~~D~-~~l~~ai~~~~~~~~~~~~~~~yLe 238 (325)
T PF07693_consen 170 SKKRIVIIIDDLDRCSP--------EEIVELLE-AIKLLLDF-PNIIFILAFDP-EILEKAIEKNYGEGFDEIDGREYLE 238 (325)
T ss_pred CCceEEEEEcchhcCCc--------HHHHHHHH-HHHHhcCC-CCeEEEEEecH-HHHHHHHHhhcCcccccccHHHHHH
Confidence 34489999999999943 22333332 22333233 45666666653 3233322 2
Q ss_pred cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccc-----cCCCChhHhHHHHHHhCC--CCCHHHHHHHHH
Q psy4165 106 DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLK-----VAPFDYTSLCSKIAHVTE--GLSGREIAKLGV 176 (242)
Q Consensus 106 ~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~-----~~~~d~~~~l~~la~~t~--g~s~adi~~lv~ 176 (242)
.-|+..+.+|+|+..+...++...+................ .........+..+..... .-+|++|+++++
T Consensus 239 Kiiq~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npR~ikr~iN 316 (325)
T PF07693_consen 239 KIIQVPFSLPPPSPSDLERYLNELLESLESETNESDDIETLSNSASNENLRIDEILNDIIDSIDFSIGNPRDIKRFIN 316 (325)
T ss_pred hhcCeEEEeCCCCHHHHHHHHHHHHHHhhhccccccchhhhhhcchhhhhhHHHHHHHHHHhhhhcCCCHHHHHHHHH
Confidence 45788999999999998888888876543322111100000 000001222334444332 458999999987
No 223
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.48 E-value=0.016 Score=52.02 Aligned_cols=149 Identities=15% Similarity=0.098 Sum_probs=84.2
Q ss_pred cCCcEEEEecCCcccccchHHHHHHHHHHHHH-------h-------CCCcEEEEEecccccccccCCCccchHHHHHHH
Q psy4165 10 SGMDYAIMTGGDVAPMGSSGVTAIHKVFDWAS-------S-------SRKGLVLFIDEADAFLRKRSSETISESLRATLN 75 (242)
Q Consensus 10 ~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~-------~-------~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~ 75 (242)
.+.||+.+||+.+....-+++ +|-..+ . .+....||+|||..+- ...+..+-
T Consensus 129 ~~~PFI~~NCa~~~en~~~~e-----LFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP---------~~~Q~kLl 194 (403)
T COG1221 129 AEAPFIAFNCAAYSENLQEAE-----LFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLP---------PEGQEKLL 194 (403)
T ss_pred cCCCEEEEEHHHhCcCHHHHH-----HhccccceeecccCCcCchheecCCCEEehhhhhhCC---------HhHHHHHH
Confidence 467999999998864321211 333111 1 1126899999999983 33444455
Q ss_pred HHHHH-----hc---cCCCCeEEEEecCCcccccHHHh-------cccccEEEeCCC--CHHHHHHHHHHHHhccccchh
Q psy4165 76 AFLYR-----TG---EQSDKFMLVLASNTPQQFDWAVN-------DRLDEMVEFPLP--TLNERERLVRLYFDKFVLQPA 138 (242)
Q Consensus 76 ~lL~~-----l~---~~~~~v~vI~tTn~~~~ld~al~-------~Rfd~~i~~~~P--~~~~R~~Il~~~l~~~~~~~~ 138 (242)
.+|.. ++ .....|-+|+||| ..++.+++ +|+...|++|+. -.+++..+.++|+.......
T Consensus 195 ~~le~g~~~rvG~~~~~~~dVRli~AT~--~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l- 271 (403)
T COG1221 195 RVLEEGEYRRVGGSQPRPVDVRLICATT--EDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRL- 271 (403)
T ss_pred HHHHcCceEecCCCCCcCCCceeeeccc--cCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHc-
Confidence 55544 22 2344688998886 34555555 377778888765 45677778888887643321
Q ss_pred hhcccccccCCCChhHhHHHHHHh-CCCCCHHHHHHHHHHHHHHH
Q psy4165 139 AQGKRRLKVAPFDYTSLCSKIAHV-TEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 139 ~~~~~~~~~~~~d~~~~l~~la~~-t~g~s~adi~~lv~~a~~~~ 182 (242)
+.+....+ ...+..+-.. .+| +.++|+++|..+.+.+
T Consensus 272 -----~~~~~~~~-~~a~~~L~~y~~pG-NirELkN~Ve~~~~~~ 309 (403)
T COG1221 272 -----GLPLSVDS-PEALRALLAYDWPG-NIRELKNLVERAVAQA 309 (403)
T ss_pred -----CCCCCCCC-HHHHHHHHhCCCCC-cHHHHHHHHHHHHHHh
Confidence 22222222 1112222222 222 6788888887444443
No 224
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=96.48 E-value=0.013 Score=52.50 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=59.8
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhc-------------cCCCCeEEEEecCCcc-cccHHH
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG-------------EQSDKFMLVLASNTPQ-QFDWAV 104 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~-------------~~~~~v~vI~tTn~~~-~ld~al 104 (242)
.|+.+ ..|+|+||+-.|- ..+++.||+-+. .++-++++|||+|.-. .|-|.|
T Consensus 140 La~An--RGIlYvDEvnlL~------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqL 205 (423)
T COG1239 140 LARAN--RGILYVDEVNLLD------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQL 205 (423)
T ss_pred hhhcc--CCEEEEecccccc------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhh
Confidence 44545 4899999998882 234555555442 2345699999999653 688888
Q ss_pred hcccccEEEeCCC-CHHHHHHHHHHHHh
Q psy4165 105 NDRLDEMVEFPLP-TLNERERLVRLYFD 131 (242)
Q Consensus 105 ~~Rfd~~i~~~~P-~~~~R~~Il~~~l~ 131 (242)
+.||...|.+..| +.++|.+|.++-+.
T Consensus 206 lDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 206 LDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred HhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 8999999999988 88999999998765
No 225
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.46 E-value=0.13 Score=49.64 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=77.8
Q ss_pred ChHHHHHHhc---CCcEEEEecCCcccc------cch--------HHHHHHHHHHHHHhCCCcEEEEEecccccccccCC
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPM------GSS--------GVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSS 63 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~------~g~--------~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~ 63 (242)
++|++|...+ +.||+.++|..+... +|. ....+ ..|+.|. +..|||||||.+-
T Consensus 414 ~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~-g~le~a~----~GtL~Ldei~~L~----- 483 (686)
T PRK15429 414 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI-GRFELAD----KSSLFLDEVGDMP----- 483 (686)
T ss_pred HHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchh-hHHHhcC----CCeEEEechhhCC-----
Confidence 4788887754 469999999876321 110 01111 2233322 6899999999983
Q ss_pred CccchHHHHHHHHHHHHhc--------cCCCCeEEEEecCCcc-------cccHHHhcccccEEEeCCCCHHHH----HH
Q psy4165 64 ETISESLRATLNAFLYRTG--------EQSDKFMLVLASNTPQ-------QFDWAVNDRLDEMVEFPLPTLNER----ER 124 (242)
Q Consensus 64 ~~~~~~~~~~l~~lL~~l~--------~~~~~v~vI~tTn~~~-------~ld~al~~Rfd~~i~~~~P~~~~R----~~ 124 (242)
...+..+..+|..-. ....++-+|++|+..- .+.+.+.-|+. .+.+..|...+| ..
T Consensus 484 ----~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~ 558 (686)
T PRK15429 484 ----LELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPL 558 (686)
T ss_pred ----HHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHH
Confidence 334444444543311 1123577888887642 12222333332 344555554444 44
Q ss_pred HHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 125 LVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 125 Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
++++|+.++.... +.....+. ...+..|...-==-+.++|++++.
T Consensus 559 L~~~~l~~~~~~~------~~~~~~~s-~~al~~L~~y~WPGNvrEL~~~i~ 603 (686)
T PRK15429 559 LVKAFTFKIARRM------GRNIDSIP-AETLRTLSNMEWPGNVRELENVIE 603 (686)
T ss_pred HHHHHHHHHHHHc------CCCCCCcC-HHHHHHHHhCCCCCcHHHHHHHHH
Confidence 6777776642211 11111222 223344444421135677777775
No 226
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=96.41 E-value=0.056 Score=45.07 Aligned_cols=109 Identities=13% Similarity=0.170 Sum_probs=64.4
Q ss_pred hHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHh
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT 81 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l 81 (242)
.+|++|..+|.+++.++|++-. .-..+.++|.-+... ++.++|||++.+- ...-.++.+.+..+
T Consensus 48 tik~La~~lG~~~~vfnc~~~~-----~~~~l~ril~G~~~~--GaW~cfdefnrl~---------~~vLS~i~~~i~~i 111 (231)
T PF12774_consen 48 TIKDLARALGRFVVVFNCSEQM-----DYQSLSRILKGLAQS--GAWLCFDEFNRLS---------EEVLSVISQQIQSI 111 (231)
T ss_dssp HHHHHHHCTT--EEEEETTSSS------HHHHHHHHHHHHHH--T-EEEEETCCCSS---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeEEEecccccc-----cHHHHHHHHHHHhhc--Cchhhhhhhhhhh---------HHHHHHHHHHHHHH
Confidence 4789999999999999999864 345788889877766 5999999999983 33333444444333
Q ss_pred ----ccC-------------CCCeEEEEecC----CcccccHHHhcccccEEEeCCCCHHHHHHHHH
Q psy4165 82 ----GEQ-------------SDKFMLVLASN----TPQQFDWAVNDRLDEMVEFPLPTLNERERLVR 127 (242)
Q Consensus 82 ----~~~-------------~~~v~vI~tTn----~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~ 127 (242)
... +...-++.|.| .-..||+.|+.-| +.+.+-.||.+...+++-
T Consensus 112 ~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~L 177 (231)
T PF12774_consen 112 QDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEILL 177 (231)
T ss_dssp HHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHHH
T ss_pred HHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHHH
Confidence 111 11233444555 2357888887666 689999998877655543
No 227
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.11 Score=49.55 Aligned_cols=147 Identities=20% Similarity=0.200 Sum_probs=88.1
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHH-------------h----ccCCCCeEEEEecCC-----cccccHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYR-------------T----GEQSDKFMLVLASNT-----PQQFDWA 103 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~-------------l----~~~~~~v~vI~tTn~-----~~~ld~a 103 (242)
..||||||+..|.. ......|..++.. . ...+-.+.+|+..|+ ...+|+.
T Consensus 226 gGVLiIdei~lL~~--------~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~ 297 (647)
T COG1067 226 GGVLIIDEIGLLAQ--------PLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRS 297 (647)
T ss_pred CcEEEEEhhhhhCc--------HHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHH
Confidence 68999999999952 2233344444433 0 112233566666653 3345555
Q ss_pred HhcccccEEEeC--CC-CHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCC-----CCHHHHHHHH
Q psy4165 104 VNDRLDEMVEFP--LP-TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEG-----LSGREIAKLG 175 (242)
Q Consensus 104 l~~Rfd~~i~~~--~P-~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g-----~s~adi~~lv 175 (242)
++.-|....+|. .| +.+.|..+|+.+.+.+..+. +-..++.--+...+....++++. .+++||.+++
T Consensus 298 r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~-----~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv 372 (647)
T COG1067 298 RIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDG-----NIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLV 372 (647)
T ss_pred HHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcC-----CCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHH
Confidence 555565555555 66 88999999999998754331 01111111122233445555432 6899999999
Q ss_pred HHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 176 VAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+.|--.+.......++.+|+++|++.....
T Consensus 373 ~~A~~ia~~~~~~~I~ae~Ve~a~~~~~~~ 402 (647)
T COG1067 373 REAGDIAVSEGRKLITAEDVEEALQKRELR 402 (647)
T ss_pred HHhhHHHhcCCcccCcHHHHHHHHHhhhhH
Confidence 944444444455699999999999885433
No 228
>KOG1051|consensus
Probab=96.21 E-value=0.027 Score=55.16 Aligned_cols=114 Identities=13% Similarity=0.138 Sum_probs=79.5
Q ss_pred CcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCe
Q psy4165 12 MDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKF 88 (242)
Q Consensus 12 ~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v 88 (242)
..++.++...+.. ++ |+.+..++.+.+.+.....+.||||||++.+.+.....+ .... ..+|..+-. .+++
T Consensus 244 ~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~----~~d~-~nlLkp~L~-rg~l 317 (898)
T KOG1051|consen 244 KKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG----AIDA-ANLLKPLLA-RGGL 317 (898)
T ss_pred cceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch----HHHH-HHhhHHHHh-cCCe
Confidence 4567777665553 44 899999999999999665589999999999998765521 1111 223333322 3338
Q ss_pred EEEEecCC-----cccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 89 MLVLASNT-----PQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 89 ~vI~tTn~-----~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
-+||||.. .-.=||++-+||+ .+.++-|+.+.-..||...-.+
T Consensus 318 ~~IGatT~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 318 WCIGATTLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred EEEecccHHHHHHHHhhCcchhhCcc-eeEeccCcccchhhhhhhhhhh
Confidence 99998862 2234889999998 7789999988766677666554
No 229
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.19 E-value=0.088 Score=49.31 Aligned_cols=117 Identities=17% Similarity=0.254 Sum_probs=61.1
Q ss_pred ChHHHHHHh-----------cCCcEEEEecCCcccccchHH------H--------HHHHHHHHHHhCCCcEEEEEeccc
Q psy4165 1 MFAKKLAHH-----------SGMDYAIMTGGDVAPMGSSGV------T--------AIHKVFDWASSSRKGLVLFIDEAD 55 (242)
Q Consensus 1 llA~aiA~e-----------~~~~~~~v~~~~l~~~~g~~e------~--------~l~~~f~~A~~~~~p~Il~iDeiD 55 (242)
++|++|-.. .+.||+.++|+.+-...-+++ . .-..+|+.|. ...||||||+
T Consensus 257 ~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~----gGTLfLdeI~ 332 (538)
T PRK15424 257 LAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH----GGTLFLDEIG 332 (538)
T ss_pred HHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhccC----CCEEEEcChH
Confidence 467877665 456999999998742110100 0 0001233322 5789999999
Q ss_pred ccccccCCCccchHHHHHHHHHHHHhc-----c---CCCCeEEEEecCCcccccHHHh-ccccc-------EEEeCCCCH
Q psy4165 56 AFLRKRSSETISESLRATLNAFLYRTG-----E---QSDKFMLVLASNTPQQFDWAVN-DRLDE-------MVEFPLPTL 119 (242)
Q Consensus 56 ~l~~~r~~~~~~~~~~~~l~~lL~~l~-----~---~~~~v~vI~tTn~~~~ld~al~-~Rfd~-------~i~~~~P~~ 119 (242)
.+- ...+..+..+|..-. . ..-.+-+|++||.. +...+. |+|.. .+.+..|..
T Consensus 333 ~Lp---------~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~--L~~~v~~g~Fr~dL~yrL~~~~I~lPPL 401 (538)
T PRK15424 333 EMP---------LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCD--LEEDVRQGRFRRDLFYRLSILRLQLPPL 401 (538)
T ss_pred hCC---------HHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCC--HHHHHhcccchHHHHHHhcCCeecCCCh
Confidence 983 333434444443211 0 11235788888754 333222 33321 334444443
Q ss_pred ----HHHHHHHHHHHhc
Q psy4165 120 ----NERERLVRLYFDK 132 (242)
Q Consensus 120 ----~~R~~Il~~~l~~ 132 (242)
++...++++|+.+
T Consensus 402 ReR~eDI~~L~~~fl~~ 418 (538)
T PRK15424 402 RERVADILPLAESFLKQ 418 (538)
T ss_pred hhchhHHHHHHHHHHHH
Confidence 4455677778765
No 230
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.17 E-value=0.14 Score=48.96 Aligned_cols=175 Identities=18% Similarity=0.165 Sum_probs=94.5
Q ss_pred cCCcEEEEecCCcccccchHHHH------H-HHHHHHHHh----CCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 10 SGMDYAIMTGGDVAPMGSSGVTA------I-HKVFDWASS----SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 10 ~~~~~~~v~~~~l~~~~g~~e~~------l-~~~f~~A~~----~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
.+.||+..+++...+..|..+-. + ..-|...+. .+...+|||||++.+- ......+..+|
T Consensus 180 ~~aPvi~~~~p~~~~LfG~i~~~~~~~Gg~~t~~~~~i~~G~L~kAnGGtL~LDei~~L~---------~~~q~~Llr~L 250 (637)
T PRK13765 180 KTAPFVDATGAHAGALLGDVRHDPFQSGGLETPAHDRVEAGAIHKAHKGVLFIDEINTLD---------LESQQSLLTAM 250 (637)
T ss_pred CCCCEEEeCCCCHHHcCCccccccccccccccCccccCCCCceeECCCcEEEEeChHhCC---------HHHHHHHHHHH
Confidence 46799998887765544433311 1 112222111 1126899999999992 22333333343
Q ss_pred HH--hc--c--------------CCCCeEEEEecCCc--ccccHHHhcccc---cEEEeC--CC-CHHHHHHHHHHHHhc
Q psy4165 79 YR--TG--E--------------QSDKFMLVLASNTP--QQFDWAVNDRLD---EMVEFP--LP-TLNERERLVRLYFDK 132 (242)
Q Consensus 79 ~~--l~--~--------------~~~~v~vI~tTn~~--~~ld~al~~Rfd---~~i~~~--~P-~~~~R~~Il~~~l~~ 132 (242)
.. +. . .+-.+.||++||+. ..+||+|..||. ..++|. .| +.+.+..+++.+-+.
T Consensus 251 ~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe 330 (637)
T PRK13765 251 QEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQE 330 (637)
T ss_pred HhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHH
Confidence 21 10 0 01246788888774 677999998885 556655 22 456666666544333
Q ss_pred cccchhhhcccccccCCCCh---hHhHHHHHHhCCC-----CCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 133 FVLQPAAQGKRRLKVAPFDY---TSLCSKIAHVTEG-----LSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~d~---~~~l~~la~~t~g-----~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
.... -....++- ...++...+...- +..++|..+++.|...+.......++.+++.+|+..
T Consensus 331 ~~~~--------G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 331 VKRD--------GKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred hhhc--------cCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 2110 00112221 1122333333321 347899999996555555555568888888777653
No 231
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.12 E-value=0.055 Score=42.80 Aligned_cols=89 Identities=18% Similarity=0.286 Sum_probs=52.8
Q ss_pred ChHHHHHHhcC---CcEEEEecCCcccccchHHHHHHHHH------------------HHHHhCCCcEEEEEeccccccc
Q psy4165 1 MFAKKLAHHSG---MDYAIMTGGDVAPMGSSGVTAIHKVF------------------DWASSSRKGLVLFIDEADAFLR 59 (242)
Q Consensus 1 llA~aiA~e~~---~~~~~v~~~~l~~~~g~~e~~l~~~f------------------~~A~~~~~p~Il~iDeiD~l~~ 59 (242)
++|++|-+... .||+.++|+.+.. +..-.++| +.|. ...|||||||.+-
T Consensus 37 ~lA~~IH~~s~r~~~pfi~vnc~~~~~-----~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~----~GtL~Ld~I~~L~- 106 (168)
T PF00158_consen 37 LLARAIHNNSPRKNGPFISVNCAALPE-----ELLESELFGHEKGAFTGARSDKKGLLEQAN----GGTLFLDEIEDLP- 106 (168)
T ss_dssp HHHHHHHHCSTTTTS-EEEEETTTS-H-----HHHHHHHHEBCSSSSTTTSSEBEHHHHHTT----TSEEEEETGGGS--
T ss_pred HHHHHHHHhhhcccCCeEEEehhhhhc-----chhhhhhhccccccccccccccCCceeecc----ceEEeecchhhhH-
Confidence 47888877643 6999999998732 22223333 3333 6899999999993
Q ss_pred ccCCCccchHHHHHHHHHHHHh-----cc---CCCCeEEEEecCCcccccHHHh-cccc
Q psy4165 60 KRSSETISESLRATLNAFLYRT-----GE---QSDKFMLVLASNTPQQFDWAVN-DRLD 109 (242)
Q Consensus 60 ~r~~~~~~~~~~~~l~~lL~~l-----~~---~~~~v~vI~tTn~~~~ld~al~-~Rfd 109 (242)
...+..+..+|..- +. ..-++-+|+||+. ++...+. |+|.
T Consensus 107 --------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~--~l~~~v~~g~fr 155 (168)
T PF00158_consen 107 --------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK--DLEELVEQGRFR 155 (168)
T ss_dssp --------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHHHHHTTSS-
T ss_pred --------HHHHHHHHHHHhhchhccccccccccccceEEeecCc--CHHHHHHcCCCh
Confidence 34455555555532 11 1235889999985 4666665 7775
No 232
>KOG2228|consensus
Probab=96.12 E-value=0.071 Score=46.64 Aligned_cols=93 Identities=14% Similarity=0.185 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHh----CCCcEEEEEecccccccccCCCccchHHHHHH-HHHHHHhccCCCCeEEEEecCCcccc---
Q psy4165 29 GVTAIHKVFDWASS----SRKGLVLFIDEADAFLRKRSSETISESLRATL-NAFLYRTGEQSDKFMLVLASNTPQQF--- 100 (242)
Q Consensus 29 ~e~~l~~~f~~A~~----~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l-~~lL~~l~~~~~~v~vI~tTn~~~~l--- 100 (242)
...++..+....+. ...|.|.++||+|.+++- .++++ =.+..--+....+|.+||.|.+.+.+
T Consensus 117 fte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h---------~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~L 187 (408)
T KOG2228|consen 117 FTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH---------SRQTLLYNLFDISQSARAPICIIGVTTRLDILELL 187 (408)
T ss_pred cchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc---------hhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHH
Confidence 33445555554443 122577778899999752 22222 22222223556789999999777655
Q ss_pred cHHHhcccccE-EEeCCC-CHHHHHHHHHHHH
Q psy4165 101 DWAVNDRLDEM-VEFPLP-TLNERERLVRLYF 130 (242)
Q Consensus 101 d~al~~Rfd~~-i~~~~P-~~~~R~~Il~~~l 130 (242)
...+.+||... |++++| ...+-.++++..+
T Consensus 188 EKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 188 EKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 45555899766 777766 6788888888887
No 233
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=95.90 E-value=0.071 Score=49.30 Aligned_cols=175 Identities=17% Similarity=0.220 Sum_probs=90.3
Q ss_pred ChHHHHHHhcC---CcEEEEecCCcccccchHH--HHHHHHHHHHHhCC--------CcEEEEEecccccccccCCCccc
Q psy4165 1 MFAKKLAHHSG---MDYAIMTGGDVAPMGSSGV--TAIHKVFDWASSSR--------KGLVLFIDEADAFLRKRSSETIS 67 (242)
Q Consensus 1 llA~aiA~e~~---~~~~~v~~~~l~~~~g~~e--~~l~~~f~~A~~~~--------~p~Il~iDeiD~l~~~r~~~~~~ 67 (242)
|+|++|=+.+. -||+.++|+.+-...=|+| ..-+-.|.-|.... ...-||+|||-.+ +
T Consensus 283 lfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem---------p 353 (560)
T COG3829 283 LFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM---------P 353 (560)
T ss_pred HHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC---------C
Confidence 47787766644 5999999987732111111 01122344443321 1467999999777 3
Q ss_pred hHHHHHHHHHHHHh-----c---cCCCCeEEEEecCCcccccHHHh-ccccc-------EEEeCCCC----HHHHHHHHH
Q psy4165 68 ESLRATLNAFLYRT-----G---EQSDKFMLVLASNTPQQFDWAVN-DRLDE-------MVEFPLPT----LNERERLVR 127 (242)
Q Consensus 68 ~~~~~~l~~lL~~l-----~---~~~~~v~vI~tTn~~~~ld~al~-~Rfd~-------~i~~~~P~----~~~R~~Il~ 127 (242)
-..+.-+...|++= + ...-.|=||+|||+ .+-+++. |+|-. ++.+..|- .++...+..
T Consensus 354 l~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~--nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~ 431 (560)
T COG3829 354 LPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNR--NLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAE 431 (560)
T ss_pred HHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCc--CHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHH
Confidence 33444444444431 1 12235899999996 4667777 66521 34444443 355556677
Q ss_pred HHHhccccchhhhcccccccCCCChhHhHHHHHHhC-CCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHH
Q psy4165 128 LYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT-EGLSGREIAKLGVAWQASAYASEDGVLTEAMVM 196 (242)
Q Consensus 128 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t-~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~ 196 (242)
+++.++.... +.....+.- ..+..|.+.- + =+.++|+|++. .+..+...+..++.+++-
T Consensus 432 ~Fl~k~s~~~------~~~v~~ls~-~a~~~L~~y~WP-GNVRELeNviE--R~v~~~~~~~~I~~~~lp 491 (560)
T COG3829 432 YFLDKFSRRY------GRNVKGLSP-DALALLLRYDWP-GNVRELENVIE--RAVNLVESDGLIDADDLP 491 (560)
T ss_pred HHHHHHHHHc------CCCcccCCH-HHHHHHHhCCCC-chHHHHHHHHH--HHHhccCCcceeehhhcc
Confidence 7777643332 222222331 1222232221 1 15677777775 233334444455555443
No 234
>PRK08116 hypothetical protein; Validated
Probab=95.88 E-value=0.1 Score=44.43 Aligned_cols=115 Identities=15% Similarity=0.134 Sum_probs=61.7
Q ss_pred hHHHHHHhc---CCcEEEEecCCccccc-----chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMG-----SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRAT 73 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~-----g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~ 73 (242)
||.|||+++ +.+++.++.+++...+ +.+.....++++... . ..+|+|||+...- ........
T Consensus 130 La~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~-~--~dlLviDDlg~e~-------~t~~~~~~ 199 (268)
T PRK08116 130 LAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV-N--ADLLILDDLGAER-------DTEWAREK 199 (268)
T ss_pred HHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc-C--CCEEEEecccCCC-------CCHHHHHH
Confidence 788888874 7899999988776432 111112223333333 2 4699999985421 12222333
Q ss_pred HHHHHHHhccCCCCeEEEEecCCc-cc----ccHHHhccc---ccEEEeCCCCHHHHHHHHHHHH
Q psy4165 74 LNAFLYRTGEQSDKFMLVLASNTP-QQ----FDWAVNDRL---DEMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 74 l~~lL~~l~~~~~~v~vI~tTn~~-~~----ld~al~~Rf---d~~i~~~~P~~~~R~~Il~~~l 130 (242)
+-.++... +..+..+|.|||.+ .. ++..+.+|+ -..|.++-|+ -|.++.+.-+
T Consensus 200 l~~iin~r--~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d--~R~~~~~ek~ 260 (268)
T PRK08116 200 VYNIIDSR--YRKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS--YRKEIAKEKL 260 (268)
T ss_pred HHHHHHHH--HHCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC--hhHHHHHHHH
Confidence 33343332 12233577777764 33 466677663 2345565555 3655555443
No 235
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=95.68 E-value=0.063 Score=51.33 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 166 LSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 166 ~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
.|.++|+.+++-++|.|...-.+.++.+|.++|++-+.
T Consensus 556 iT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 556 ITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVD 593 (682)
T ss_pred ccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH
Confidence 78999999999888888888888999999999987765
No 236
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=95.50 E-value=0.02 Score=46.24 Aligned_cols=67 Identities=22% Similarity=0.358 Sum_probs=41.6
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCC
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLP 117 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P 117 (242)
+++|+|||+..+++.|.... ......+ ++|... ...++-+|.+|..+..||+.++++.+..+++..+
T Consensus 80 ~~liviDEa~~~~~~r~~~~--~~~~~~~-~~l~~h--Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 80 GSLIVIDEAQNFFPSRSWKG--KKVPEII-EFLAQH--RHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp T-EEEETTGGGTSB---T-T------HHH-HGGGGC--CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred CcEEEEECChhhcCCCcccc--ccchHHH-HHHHHh--CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 79999999999999887632 1122333 444333 3445788899999999999999888888877655
No 237
>PF13173 AAA_14: AAA domain
Probab=95.48 E-value=0.077 Score=39.70 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=56.2
Q ss_pred hHHHHHHhcC--CcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 2 FAKKLAHHSG--MDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 2 lA~aiA~e~~--~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+++.++.++. -.+++++..+..... .....+.+.|....... +.+|||||++.+- .....+..+.
T Consensus 18 ll~~~~~~~~~~~~~~yi~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~i~iDEiq~~~----------~~~~~lk~l~- 84 (128)
T PF13173_consen 18 LLKQLAKDLLPPENILYINFDDPRDRR-LADPDLLEYFLELIKPG-KKYIFIDEIQYLP----------DWEDALKFLV- 84 (128)
T ss_pred HHHHHHHHhcccccceeeccCCHHHHH-HhhhhhHHHHHHhhccC-CcEEEEehhhhhc----------cHHHHHHHHH-
Confidence 5667777665 667777776653211 00000223333322123 7999999998881 1233334443
Q ss_pred HhccCCCCeEEEEecCCcccc----cHHHhcccccEEEeCCCCHHH
Q psy4165 80 RTGEQSDKFMLVLASNTPQQF----DWAVNDRLDEMVEFPLPTLNE 121 (242)
Q Consensus 80 ~l~~~~~~v~vI~tTn~~~~l----d~al~~Rfd~~i~~~~P~~~~ 121 (242)
+.. .++-+|.|++....+ ...+.||.. .+++.+.+..|
T Consensus 85 --d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 85 --DNG-PNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred --Hhc-cCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 222 334555555444433 344558986 88888888765
No 238
>PF05729 NACHT: NACHT domain
Probab=95.39 E-value=0.13 Score=39.58 Aligned_cols=85 Identities=21% Similarity=0.372 Sum_probs=47.7
Q ss_pred CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccc--cEEEeCCCCHH
Q psy4165 43 SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLD--EMVEFPLPTLN 120 (242)
Q Consensus 43 ~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd--~~i~~~~P~~~ 120 (242)
..++.+|+||.+|.+.......+ .......+..++.. ....++-+|.|+. +...+. +..++. ..+++++-+.+
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~-~~~~~~~l~~l~~~--~~~~~~~liit~r-~~~~~~-~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQE-RQRLLDLLSQLLPQ--ALPPGVKLIITSR-PRAFPD-LRRRLKQAQILELEPFSEE 153 (166)
T ss_pred cCCceEEEEechHhcccchhhhH-HHHHHHHHHHHhhh--ccCCCCeEEEEEc-CChHHH-HHHhcCCCcEEEECCCCHH
Confidence 33479999999999976432210 11223334444432 1122333333332 333322 332222 46899989999
Q ss_pred HHHHHHHHHHhc
Q psy4165 121 ERERLVRLYFDK 132 (242)
Q Consensus 121 ~R~~Il~~~l~~ 132 (242)
++.++++.+++.
T Consensus 154 ~~~~~~~~~f~~ 165 (166)
T PF05729_consen 154 DIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHhhc
Confidence 999999999863
No 239
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=95.02 E-value=0.17 Score=46.53 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=83.9
Q ss_pred ChHHHHHHhcC---CcEEEEecCCcccccchHH--HHHHHHHHHHHhCC-------CcEEEEEecccccccccCCCccch
Q psy4165 1 MFAKKLAHHSG---MDYAIMTGGDVAPMGSSGV--TAIHKVFDWASSSR-------KGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 1 llA~aiA~e~~---~~~~~v~~~~l~~~~g~~e--~~l~~~f~~A~~~~-------~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
++||+|=..+. .||+.+||+.+-...-|+| ...+-.|.-|.... .+.-||+|||-.+ +-
T Consensus 261 lvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel---------PL 331 (550)
T COG3604 261 LVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL---------PL 331 (550)
T ss_pred HHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccC---------CH
Confidence 36777766544 5999999998854332333 23444455444321 2678999999776 22
Q ss_pred HHHHHHHHHHHH--hc---c---CCCCeEEEEecCCcccccHHHh-ccccc-------EEEeCCCCH----HHHHHHHHH
Q psy4165 69 SLRATLNAFLYR--TG---E---QSDKFMLVLASNTPQQFDWAVN-DRLDE-------MVEFPLPTL----NERERLVRL 128 (242)
Q Consensus 69 ~~~~~l~~lL~~--l~---~---~~~~v~vI~tTn~~~~ld~al~-~Rfd~-------~i~~~~P~~----~~R~~Il~~ 128 (242)
..+.-+-..|++ ++ . ..=.|=||++||+ +|-.++. |+|-- .+.+..|-. ++.--+.++
T Consensus 332 ~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNR--DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~ 409 (550)
T COG3604 332 ALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNR--DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGY 409 (550)
T ss_pred HHHHHHHHHHhhcceeecCCCceeEEEEEEEeccch--hHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHH
Confidence 333333333333 21 1 1113889999996 5777777 65521 334444433 333445566
Q ss_pred HHhccccchhhhcccccccCCCChh-HhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 129 YFDKFVLQPAAQGKRRLKVAPFDYT-SLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~~d~~-~~l~~la~~t~g~s~adi~~lv~ 176 (242)
|+.++.... ....+.++ ..++.|.+..===+.++|++++.
T Consensus 410 Fle~~~~~~--------gr~~l~ls~~Al~~L~~y~wPGNVRELen~ve 450 (550)
T COG3604 410 FLEKFRRRL--------GRAILSLSAEALELLSSYEWPGNVRELENVVE 450 (550)
T ss_pred HHHHHHHhc--------CCcccccCHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 666543321 12222222 22333443321126788999997
No 240
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.89 E-value=0.026 Score=46.10 Aligned_cols=63 Identities=32% Similarity=0.417 Sum_probs=24.3
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhc-------------cCCCCeEEEEecC-----------------
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG-------------EQSDKFMLVLASN----------------- 95 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~-------------~~~~~v~vI~tTn----------------- 95 (242)
..|||+||+-.| ...++..|+.-|+ .++.++++|+|+|
T Consensus 107 ~GVLflDE~~ef------------~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs 174 (206)
T PF01078_consen 107 RGVLFLDELNEF------------DRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCS 174 (206)
T ss_dssp TSEEEECETTTS-------------HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S----------------
T ss_pred CCEEEechhhhc------------CHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEecccccccccccccccccc
Confidence 489999999777 2456666666553 2344678899887
Q ss_pred ------CcccccHHHhcccccEEEeCCCCHH
Q psy4165 96 ------TPQQFDWAVNDRLDEMVEFPLPTLN 120 (242)
Q Consensus 96 ------~~~~ld~al~~Rfd~~i~~~~P~~~ 120 (242)
+...|...|+.|||..++++..+.+
T Consensus 175 ~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 175 PRQIRRYQSRLSGPLLDRIDIHVEVPRVSYE 205 (206)
T ss_dssp -------------------------------
T ss_pred ccccccccccccccccccccccccccccccC
Confidence 2345666777888888888876654
No 241
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.87 E-value=0.068 Score=40.34 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=46.6
Q ss_pred ChHHHHHHhcCCcEEEEecC-Ccc-----c--ccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGG-DVA-----P--MGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~-~l~-----~--~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
++|+++|+.+|..|..+.++ ++. . .+.... ..|...+.---..|+++|||...-+ +
T Consensus 14 ~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~----~~f~~~~GPif~~ill~DEiNrapp------------k 77 (131)
T PF07726_consen 14 TLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET----GEFEFRPGPIFTNILLADEINRAPP------------K 77 (131)
T ss_dssp HHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT----TEEEEEE-TT-SSEEEEETGGGS-H------------H
T ss_pred HHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC----CeeEeecChhhhceeeecccccCCH------------H
Confidence 47999999999999988764 443 1 111110 0010000000026999999987633 2
Q ss_pred HHHHHHHHhc-----------cCCCCeEEEEecCCcc-----cccHHHhccc
Q psy4165 73 TLNAFLYRTG-----------EQSDKFMLVLASNTPQ-----QFDWAVNDRL 108 (242)
Q Consensus 73 ~l~~lL~~l~-----------~~~~~v~vI~tTn~~~-----~ld~al~~Rf 108 (242)
+.+.||..|. ..+.+.+||||-|..+ .|+.|++.||
T Consensus 78 tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 78 TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 3455555552 2345688999999877 7889998888
No 242
>PF12846 AAA_10: AAA-like domain
Probab=94.76 E-value=0.13 Score=43.72 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=54.4
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc-----HHHhcccccEEEeCCCCH
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD-----WAVNDRLDEMVEFPLPTL 119 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld-----~al~~Rfd~~i~~~~P~~ 119 (242)
.|+++++||+..+.... .....+..++.+.. +.++.++.+|..+.+++ +++++-+...|-+..++.
T Consensus 220 ~~~~i~iDEa~~~~~~~-------~~~~~~~~~~~~~R--k~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~ 290 (304)
T PF12846_consen 220 RPKIIVIDEAHNFLSNP-------SGAEFLDELLREGR--KYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDS 290 (304)
T ss_pred ceEEEEeCCcccccccc-------chhhhhhHHHHHHH--hcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChH
Confidence 48999999999998653 23345556655554 44568889999999999 899999999999998887
Q ss_pred HHHH
Q psy4165 120 NERE 123 (242)
Q Consensus 120 ~~R~ 123 (242)
+...
T Consensus 291 ~~~~ 294 (304)
T PF12846_consen 291 DDAE 294 (304)
T ss_pred HHHH
Confidence 7766
No 243
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.71 E-value=0.047 Score=41.48 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=33.0
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEec-CCcc------cccHHHhcccc-cEEEeCC
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLAS-NTPQ------QFDWAVNDRLD-EMVEFPL 116 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tT-n~~~------~ld~al~~Rfd-~~i~~~~ 116 (242)
+..|||+|+|.+ +......+..+|...+ ..++-+|+++ ..+. .+++.|..||. ..|++|+
T Consensus 70 ~gtL~l~~i~~L---------~~~~Q~~L~~~l~~~~--~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 70 GGTLYLKNIDRL---------SPEAQRRLLDLLKRQE--RSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp TSEEEEECGCCS----------HHHHHHHHHHHHHCT--TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred CCEEEECChHHC---------CHHHHHHHHHHHHhcC--CCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCC
Confidence 789999999999 3344555555555433 3334444444 3332 36666665654 4555543
No 244
>KOG0990|consensus
Probab=94.63 E-value=0.45 Score=41.42 Aligned_cols=90 Identities=20% Similarity=0.179 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhC------CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHH
Q psy4165 30 VTAIHKVFDWASSS------RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWA 103 (242)
Q Consensus 30 e~~l~~~f~~A~~~------~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~a 103 (242)
.+.=.+.|..++.. ..+-.|++||.|+... ...++|=..++.++.+.-+..-.|++..+-|+
T Consensus 110 vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~------------~AQnALRRviek~t~n~rF~ii~n~~~ki~pa 177 (360)
T KOG0990|consen 110 VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR------------DAQNALRRVIEKYTANTRFATISNPPQKIHPA 177 (360)
T ss_pred hHHHHHHHHhhccceeccccCceeEEEecchhHhhH------------HHHHHHHHHHHHhccceEEEEeccChhhcCch
Confidence 34444556666631 2378999999999843 22333333455556666666778999999999
Q ss_pred HhcccccEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 104 VNDRLDEMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 104 l~~Rfd~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
++.||. .+.|.+.+.+.-...+.++...
T Consensus 178 ~qsRct-rfrf~pl~~~~~~~r~shi~e~ 205 (360)
T KOG0990|consen 178 QQSRCT-RFRFAPLTMAQQTERQSHIRES 205 (360)
T ss_pred hhcccc-cCCCCCCChhhhhhHHHHHHhc
Confidence 999997 6788888888888888888753
No 245
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=94.51 E-value=0.057 Score=47.50 Aligned_cols=146 Identities=17% Similarity=0.110 Sum_probs=76.9
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhcc-------------CCCCeEEEEecCCcc-------------c
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGE-------------QSDKFMLVLASNTPQ-------------Q 99 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~-------------~~~~v~vI~tTn~~~-------------~ 99 (242)
..|++|||+|.+-. ..+ ..|+.-|+. .+.+.-|+|++|... .
T Consensus 122 ~GiccIDe~dk~~~---------~~~---~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~ 189 (331)
T PF00493_consen 122 GGICCIDEFDKMKE---------DDR---DALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENIN 189 (331)
T ss_dssp TSEEEECTTTT--C---------HHH---HHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-
T ss_pred Cceeeecccccccc---------hHH---HHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcc
Confidence 68999999999832 222 334444421 133567889998777 5
Q ss_pred ccHHHhcccccEEEe-CCCCHHHHHHHHHHHHhccccchh-----hhcc-cccccCCCC-------------hh-HhHHH
Q psy4165 100 FDWAVNDRLDEMVEF-PLPTLNERERLVRLYFDKFVLQPA-----AQGK-RRLKVAPFD-------------YT-SLCSK 158 (242)
Q Consensus 100 ld~al~~Rfd~~i~~-~~P~~~~R~~Il~~~l~~~~~~~~-----~~~~-~~~~~~~~d-------------~~-~~l~~ 158 (242)
++++|++|||..+.+ ..|+.+.=..|.++.+........ .... ..++.+.+- ++ ...+.
T Consensus 190 l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~ 269 (331)
T PF00493_consen 190 LPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKEL 269 (331)
T ss_dssp S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHH
T ss_pred cchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHH
Confidence 888999999988765 577877777777777665322210 0000 000000000 00 00011
Q ss_pred HHH-------------hCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 159 IAH-------------VTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 159 la~-------------~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
|.+ .....|.+.|+.+++-+++.+...-+..++.+|+..|+.-..
T Consensus 270 I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~ 327 (331)
T PF00493_consen 270 IINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFE 327 (331)
T ss_dssp HHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHH
Confidence 111 112367778888888777777777778899999998886543
No 246
>KOG1968|consensus
Probab=93.96 E-value=0.29 Score=48.31 Aligned_cols=147 Identities=16% Similarity=0.155 Sum_probs=90.0
Q ss_pred hHHHHHHhcCCcEEEEecCCccccc------ch--HHHHHHHHH---HHHHhCCCc-EEEEEecccccccccCCCccchH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMG------SS--GVTAIHKVF---DWASSSRKG-LVLFIDEADAFLRKRSSETISES 69 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~------g~--~e~~l~~~f---~~A~~~~~p-~Il~iDeiD~l~~~r~~~~~~~~ 69 (242)
.|.++|.++|..++..+.++..++. |+ +...+...| ...+..+.+ .||+|||+|.++. ...+
T Consensus 373 ~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~dRg----- 446 (871)
T KOG1968|consen 373 AAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-EDRG----- 446 (871)
T ss_pred hHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hhhh-----
Confidence 4678899999999999999887642 22 112333333 111122223 4999999999975 1111
Q ss_pred HHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC
Q psy4165 70 LRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149 (242)
Q Consensus 70 ~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~ 149 (242)
.-..+..+. . ...+-+|++.|........-+.|...-++|+.|+.+.+..-+..++..- ++.+.
T Consensus 447 ~v~~l~~l~---~--ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se----------~~ki~- 510 (871)
T KOG1968|consen 447 GVSKLSSLC---K--KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSE----------GIKIS- 510 (871)
T ss_pred hHHHHHHHH---H--hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhccc----------ceecC-
Confidence 122234443 2 2234567777776655554556666789999999998887777776531 22222
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHHHH
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLGVA 177 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv~~ 177 (242)
...++++.+. +++||++....
T Consensus 511 ---~~~l~~~s~~----~~~DiR~~i~~ 531 (871)
T KOG1968|consen 511 ---DDVLEEISKL----SGGDIRQIIMQ 531 (871)
T ss_pred ---cHHHHHHHHh----cccCHHHHHHH
Confidence 2234666666 48899998873
No 247
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=93.81 E-value=0.28 Score=39.81 Aligned_cols=65 Identities=23% Similarity=0.394 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHHHHhCCCc-EEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 27 SSGVTAIHKVFDWASSSRKG-LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 27 g~~e~~l~~~f~~A~~~~~p-~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
|.+++.+-.++........+ .+|+|||.|.-+ +....+.+..+|..... .++=||.||..|.-||
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~L--------Hp~~q~~l~~~l~~~~~--~~~QviitTHSp~ild 303 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHL--------HPSWQRKLIELLKELSK--KNIQVIITTHSPFILD 303 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTS--------SHHHHHHHHHHHHHTGG--GSSEEEEEES-GGG--
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCC--------CHHHHHHHHHHHHhhCc--cCCEEEEeCccchhcC
Confidence 67777776677666655433 999999999887 34444444466655533 3557799999887664
No 248
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=93.65 E-value=4.3 Score=35.28 Aligned_cols=139 Identities=13% Similarity=0.136 Sum_probs=72.0
Q ss_pred HHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccC-CCCeEEEEecCCcc---cccHHHh
Q psy4165 33 IHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQ-SDKFMLVLASNTPQ---QFDWAVN 105 (242)
Q Consensus 33 l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~-~~~v~vI~tTn~~~---~ld~al~ 105 (242)
+..++..+... +++-+|++++.+.+-.. .......|...+... ++.++|+.+++.++ .+...+.
T Consensus 46 ~~~~~~~~~t~pff~~~rlVvv~~~~~~~~~---------~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~ 116 (326)
T PRK07452 46 AIQALNEAMTPPFGSGGRLVWLKNSPLCQGC---------SEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQ 116 (326)
T ss_pred HHHHHHHhcCCCCCCCceEEEEeCchhhccC---------CHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHH
Confidence 67788777543 24678899987554211 122334555556543 34455554555432 2333333
Q ss_pred cccccEEEeCCC---CHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHH-
Q psy4165 106 DRLDEMVEFPLP---TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQAS- 181 (242)
Q Consensus 106 ~Rfd~~i~~~~P---~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~- 181 (242)
. +....++..| +.++....++..+.+.+.. .+ ...+..|+..+. .|+..+.++.+..
T Consensus 117 k-~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~----------i~----~~a~~~L~~~~g----~dl~~l~~EleKL~ 177 (326)
T PRK07452 117 K-LAEEKEFSLIPPWDTEGLKQLVERTAQELGVK----------LT----PEAAELLAEAVG----NDSRRLYNELEKLA 177 (326)
T ss_pred H-ceeEEEecCCCcccHHHHHHHHHHHHHHcCCC----------CC----HHHHHHHHHHhC----ccHHHHHHHHHHHH
Confidence 3 3346666554 4555677777777764332 12 223355666543 3555554443333
Q ss_pred Hhh-hcCCCccHHHHHHHH
Q psy4165 182 AYA-SEDGVLTEAMVMSKV 199 (242)
Q Consensus 182 ~~~-~~~~~~~~~~~~~a~ 199 (242)
.++ ...+.+|.+++.+.+
T Consensus 178 ly~~~~~~~It~~~V~~~v 196 (326)
T PRK07452 178 LYAENSTKPISAEEVKALV 196 (326)
T ss_pred HhccCCCCccCHHHHHHHh
Confidence 332 234467777766553
No 249
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.09 E-value=0.29 Score=41.85 Aligned_cols=84 Identities=15% Similarity=0.236 Sum_probs=50.2
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHh---ccCC------CCeEEEEecCCcc---cccHHHhcccccEE
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT---GEQS------DKFMLVLASNTPQ---QFDWAVNDRLDEMV 112 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l---~~~~------~~v~vI~tTn~~~---~ld~al~~Rfd~~i 112 (242)
+.+|+||||+..-.+..-+. ....+++.+++..= +... .++.+|++.|... .|++.+++.|. .+
T Consensus 100 k~lv~fiDDlN~p~~d~ygt---q~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~-i~ 175 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDKYGT---QPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFN-IL 175 (272)
T ss_dssp SEEEEEEETTT-S---TTS-----HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEE-EE
T ss_pred cEEEEEecccCCCCCCCCCC---cCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheE-EE
Confidence 36899999997655433221 11233444444321 1111 2478888877533 48999999996 99
Q ss_pred EeCCCCHHHHHHHHHHHHhc
Q psy4165 113 EFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 113 ~~~~P~~~~R~~Il~~~l~~ 132 (242)
.++.|+.+.-..|+..++..
T Consensus 176 ~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 176 NIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp E----TCCHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHHHHHHhh
Confidence 99999999999999998874
No 250
>KOG0478|consensus
Probab=93.07 E-value=0.79 Score=43.76 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=43.6
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHh----------ccCCCCeEEEEecCCcc-------------cccH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT----------GEQSDKFMLVLASNTPQ-------------QFDW 102 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l----------~~~~~~v~vI~tTn~~~-------------~ld~ 102 (242)
..|-.|||+|.+- ...+.++-+.+.+= -..+.+.=|||+.|... .|+|
T Consensus 527 ~GiCCIDEFDKM~---------dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~Lpp 597 (804)
T KOG0478|consen 527 NGICCIDEFDKMS---------DSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPP 597 (804)
T ss_pred CceEEchhhhhhh---------HHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCCh
Confidence 5688999999983 33455555554431 13345567889888443 5899
Q ss_pred HHhcccccEEEe-CCCCHH
Q psy4165 103 AVNDRLDEMVEF-PLPTLN 120 (242)
Q Consensus 103 al~~Rfd~~i~~-~~P~~~ 120 (242)
.|++|||.++-+ ..||..
T Consensus 598 tLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 598 TLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred hhhhhhcEEEEEecCcchh
Confidence 999999976544 455555
No 251
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=93.02 E-value=5.6 Score=34.58 Aligned_cols=141 Identities=13% Similarity=0.074 Sum_probs=77.4
Q ss_pred HHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccC-CCCeEEEEecCCccc---c---cH
Q psy4165 33 IHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQ-SDKFMLVLASNTPQQ---F---DW 102 (242)
Q Consensus 33 l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~-~~~v~vI~tTn~~~~---l---d~ 102 (242)
+..++..+... ++.-+|++++.+.+-.. .....+..+...++.. ...++++..++..+. + -+
T Consensus 61 ~~~l~~~~~t~~lF~~~klvii~~~~~l~~~--------~~~~~l~~l~~~l~~~~~~~~~li~~~~~~~~~~k~~k~~k 132 (340)
T PRK05574 61 WDDVLEACQSLPLFSDRKLVELRLPEFLTGA--------KGEKALKRLEAYLNPLPHPDLLLIVRLPKLDKAKKKSAWFK 132 (340)
T ss_pred HHHHHHHhhccCccccCeEEEEECCCCCCch--------hHHHHHHHHHHhccCCCCCcEEEEEECCcCCHHHHhhHHHH
Confidence 55555555543 23578889998876431 1223344555444212 223555555554332 1 22
Q ss_pred HHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHH-
Q psy4165 103 AVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQAS- 181 (242)
Q Consensus 103 al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~- 181 (242)
++..+. ..++++.|+..+....++.++.+.+.. .+ ...++.++..+. .|+..+.++....
T Consensus 133 ~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~g~~----------i~----~~a~~~L~~~~~----~d~~~l~~El~KL~ 193 (340)
T PRK05574 133 ALKKKA-VVVEAQPPKEAELPQWIQQRLKQQGLQ----------ID----AAALQLLAERVE----GNLLALAQELEKLA 193 (340)
T ss_pred HHHhCc-eEEEcCCCCHHHHHHHHHHHHHHcCCC----------CC----HHHHHHHHHHhC----chHHHHHHHHHHHH
Confidence 333444 588899999999999999999875333 12 223355666644 3555554443333
Q ss_pred HhhhcCCCccHHHHHHHHHH
Q psy4165 182 AYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 182 ~~~~~~~~~~~~~~~~a~~~ 201 (242)
.++.... +|.+++.+.+..
T Consensus 194 l~~~~~~-It~~~I~~~i~~ 212 (340)
T PRK05574 194 LLYPDGK-ITLEDVEEAVPD 212 (340)
T ss_pred hhcCCCC-CCHHHHHHHHhh
Confidence 3333333 787777766443
No 252
>PF14516 AAA_35: AAA-like domain
Probab=93.01 E-value=1.5 Score=38.54 Aligned_cols=119 Identities=23% Similarity=0.222 Sum_probs=59.2
Q ss_pred HHHHHHHH--HHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHh-cc-----CCCCeEEEEecCCcccccHH
Q psy4165 32 AIHKVFDW--ASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT-GE-----QSDKFMLVLASNTPQQFDWA 103 (242)
Q Consensus 32 ~l~~~f~~--A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l-~~-----~~~~v~vI~tTn~~~~ld~a 103 (242)
.....|+. .....+|-||+|||+|.++....- .... -.+|..+ .. .-.++.+|++......+...
T Consensus 112 ~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~------~~dF-~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 112 SCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQI------ADDF-FGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEechhhhccCcch------HHHH-HHHHHHHHHhcccCcccceEEEEEecCcccccccC
Confidence 44444543 233345999999999999753111 1112 2233333 11 11233333322222222222
Q ss_pred Hh-ccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 104 VN-DRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 104 l~-~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
.. +=| ...|+++.-+.++-..+++.|-... + ...++.|-..|.| -|-=++.+|.
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~--------------~----~~~~~~l~~~tgG-hP~Lv~~~~~ 241 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYGLEF--------------S----QEQLEQLMDWTGG-HPYLVQKACY 241 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhhccC--------------C----HHHHHHHHHHHCC-CHHHHHHHHH
Confidence 21 223 3356677668999888888874321 1 1224777778877 4444444443
No 253
>PRK08181 transposase; Validated
Probab=92.96 E-value=0.23 Score=42.42 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=48.8
Q ss_pred hHHHHHHh---cCCcEEEEecCCccccc--chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHH
Q psy4165 2 FAKKLAHH---SGMDYAIMTGGDVAPMG--SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNA 76 (242)
Q Consensus 2 lA~aiA~e---~~~~~~~v~~~~l~~~~--g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~ 76 (242)
||.|||++ .|..+++++..++.... ...+..+.+.+.... ++.+|+|||++.+... ......+-+
T Consensus 122 La~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~---~~dLLIIDDlg~~~~~-------~~~~~~Lf~ 191 (269)
T PRK08181 122 LAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD---KFDLLILDDLAYVTKD-------QAETSVLFE 191 (269)
T ss_pred HHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh---cCCEEEEeccccccCC-------HHHHHHHHH
Confidence 67788764 47788888888877643 112223444454443 2689999999876432 223344555
Q ss_pred HHHHhccCCCCeEEEEecCCc
Q psy4165 77 FLYRTGEQSDKFMLVLASNTP 97 (242)
Q Consensus 77 lL~~l~~~~~~v~vI~tTn~~ 97 (242)
++....+. + -+|.|||.+
T Consensus 192 lin~R~~~--~-s~IiTSN~~ 209 (269)
T PRK08181 192 LISARYER--R-SILITANQP 209 (269)
T ss_pred HHHHHHhC--C-CEEEEcCCC
Confidence 55543222 2 467777765
No 254
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=92.52 E-value=0.36 Score=42.87 Aligned_cols=73 Identities=19% Similarity=0.132 Sum_probs=54.2
Q ss_pred EEEEEecccccccccCCCccchHHHHHHHHHHHHhccC----C-------CCeEEEEecCCcc-------cccHHHhccc
Q psy4165 47 LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQ----S-------DKFMLVLASNTPQ-------QFDWAVNDRL 108 (242)
Q Consensus 47 ~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~----~-------~~v~vI~tTn~~~-------~ld~al~~Rf 108 (242)
.|+-|+|++.. ....+..||+.+++. . -..++|++||..+ ...+||++|+
T Consensus 238 Gi~~f~Ei~K~------------~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~ 305 (361)
T smart00763 238 GILEFVEMFKA------------DIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRI 305 (361)
T ss_pred ceEEEeehhcC------------CHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhce
Confidence 67777787765 234667777766411 1 1268899999883 7789999999
Q ss_pred ccEEEeCCC-CHHHHHHHHHHHHhc
Q psy4165 109 DEMVEFPLP-TLNERERLVRLYFDK 132 (242)
Q Consensus 109 d~~i~~~~P-~~~~R~~Il~~~l~~ 132 (242)
. .|.+|.| +..+-.+|.+..+..
T Consensus 306 ~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 306 I-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred E-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 8 9999988 778888888888764
No 255
>PHA00012 I assembly protein
Probab=92.43 E-value=0.2 Score=43.86 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=40.5
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHh
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVN 105 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~ 105 (242)
.+|+++||+...++.|..++. ....+.+++.... ..++-+|.+|..+..+|+.++
T Consensus 82 gsLlVlDEaq~~fp~R~~~sk---~p~~vie~l~~hR--h~G~DvilITQ~ps~VDs~IR 136 (361)
T PHA00012 82 NGLLVLDECGTWFNSRSWNDK---ERQPVIDWFLHAR--KLGWDIIFIIQDISIMDKQAR 136 (361)
T ss_pred CcEEEEECcccccCCCCcCcC---CcHHHHHHHHHhc--cCCceEEEEcCCHHHHhHHHH
Confidence 689999999999999987541 2222344444433 445678888999999999996
No 256
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.91 E-value=0.74 Score=44.94 Aligned_cols=119 Identities=20% Similarity=0.226 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEec-CCcccccHHHhc
Q psy4165 28 SGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLAS-NTPQQFDWAVND 106 (242)
Q Consensus 28 ~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tT-n~~~~ld~al~~ 106 (242)
..+..+..+|.+...+.+|+.++|||.+.+- +......+.-|++.+ +.++.+|.+| ++|. +.-+=++
T Consensus 112 ~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~--------~~~l~~~l~fLl~~~---P~~l~lvv~SR~rP~-l~la~lR 179 (894)
T COG2909 112 SLESLLSSLLNELASYEGPLYLVLDDYHLIS--------DPALHEALRFLLKHA---PENLTLVVTSRSRPQ-LGLARLR 179 (894)
T ss_pred cHHHHHHHHHHHHHhhcCceEEEeccccccC--------cccHHHHHHHHHHhC---CCCeEEEEEeccCCC-Cccccee
Confidence 3445677788877777779999999999883 233555666665444 6677777777 4443 2211111
Q ss_pred ccccEEEeC----CCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHH-HHHHHH
Q psy4165 107 RLDEMVEFP----LPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGR-EIAKLG 175 (242)
Q Consensus 107 Rfd~~i~~~----~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~a-di~~lv 175 (242)
-=|..++++ .-+.++-.++++.... .++++.+. +.|-.+|+|+..+ .+..+.
T Consensus 180 lr~~llEi~~~~Lrf~~eE~~~fl~~~~~-------------l~Ld~~~~----~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 180 LRDELLEIGSEELRFDTEEAAAFLNDRGS-------------LPLDAADL----KALYDRTEGWAAALQLIALA 236 (894)
T ss_pred ehhhHHhcChHhhcCChHHHHHHHHHcCC-------------CCCChHHH----HHHHhhcccHHHHHHHHHHH
Confidence 113344444 2356777777766542 23444444 8899999997554 444443
No 257
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=91.63 E-value=1.3 Score=37.48 Aligned_cols=102 Identities=13% Similarity=0.104 Sum_probs=53.3
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERL 125 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~I 125 (242)
+++|+||+++... .+..+...+.....+.-+|.||.... +-..+.+. ...++++..+.++-.++
T Consensus 102 ~~LlVlDdv~~~~--------------~~~~l~~~~~~~~~~~kilvTTR~~~-v~~~~~~~-~~~~~l~~L~~~ea~~L 165 (287)
T PF00931_consen 102 RCLLVLDDVWDEE--------------DLEELREPLPSFSSGSKILVTTRDRS-VAGSLGGT-DKVIELEPLSEEEALEL 165 (287)
T ss_dssp SEEEEEEEE-SHH--------------HH-------HCHHSS-EEEEEESCGG-GGTTHHSC-EEEEECSS--HHHHHHH
T ss_pred cceeeeeeecccc--------------cccccccccccccccccccccccccc-cccccccc-ccccccccccccccccc
Confidence 8999999988752 22222222222222345666776532 32222222 56899999999999999
Q ss_pred HHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHH
Q psy4165 126 VRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLG 175 (242)
Q Consensus 126 l~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv 175 (242)
|..+..... .....+.......|++.+.| .|--|..+.
T Consensus 166 ~~~~~~~~~-----------~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 166 FKKRAGRKE-----------SESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp HHHHHTSHS---------------TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred ccccccccc-----------cccccccccccccccccccc-ccccccccc
Confidence 999975421 00111112234789999875 565555443
No 258
>KOG0991|consensus
Probab=91.45 E-value=3.1 Score=35.01 Aligned_cols=101 Identities=13% Similarity=0.112 Sum_probs=58.9
Q ss_pred EEEEecCCcccccchHHHHHHHHHHHHHhCCCc---EEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEE
Q psy4165 14 YAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKG---LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFML 90 (242)
Q Consensus 14 ~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p---~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~v 90 (242)
+++++.++-..- +..++--+.|.+-+-.-+| -||++||.|++.. ..++. +-.-|+-+++..-+
T Consensus 81 vLELNASdeRGI--DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~---------gAQQA---lRRtMEiyS~ttRF 146 (333)
T KOG0991|consen 81 VLELNASDERGI--DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA---------GAQQA---LRRTMEIYSNTTRF 146 (333)
T ss_pred hhhccCcccccc--HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh---------HHHHH---HHHHHHHHcccchh
Confidence 455555553221 3444545556665543323 5999999999842 11211 22223444555567
Q ss_pred EEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHH
Q psy4165 91 VLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLY 129 (242)
Q Consensus 91 I~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~ 129 (242)
..++|....|-..+.+|+- .+.|...+.++-..=+...
T Consensus 147 alaCN~s~KIiEPIQSRCA-iLRysklsd~qiL~Rl~~v 184 (333)
T KOG0991|consen 147 ALACNQSEKIIEPIQSRCA-ILRYSKLSDQQILKRLLEV 184 (333)
T ss_pred hhhhcchhhhhhhHHhhhH-hhhhcccCHHHHHHHHHHH
Confidence 7889999999999998875 5566656555544333333
No 259
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=91.11 E-value=0.74 Score=33.92 Aligned_cols=52 Identities=25% Similarity=0.215 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEec
Q psy4165 31 TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLAS 94 (242)
Q Consensus 31 ~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tT 94 (242)
..+..+.+...... ..+|+|||+|.+. + ...++.+...++...-+++++|+.
T Consensus 74 ~l~~~~~~~l~~~~-~~~lviDe~~~l~-~----------~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 74 ELRSLLIDALDRRR-VVLLVIDEADHLF-S----------DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHHHCT-EEEEEEETTHHHH-T----------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHHHHHHhcC-CeEEEEeChHhcC-C----------HHHHHHHHHHHhCCCCeEEEEECh
Confidence 33444444555454 4699999999975 1 334444433345333345555554
No 260
>PRK06526 transposase; Provisional
Probab=91.06 E-value=0.37 Score=40.79 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=44.2
Q ss_pred hHHHHHHh---cCCcEEEEecCCcccccc--hHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHH
Q psy4165 2 FAKKLAHH---SGMDYAIMTGGDVAPMGS--SGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNA 76 (242)
Q Consensus 2 lA~aiA~e---~~~~~~~v~~~~l~~~~g--~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~ 76 (242)
||.+|+.+ .|..++.++.+++..... .....+...+.. ..++.+|+|||++.+.. .......+-+
T Consensus 114 La~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~---l~~~dlLIIDD~g~~~~-------~~~~~~~L~~ 183 (254)
T PRK06526 114 LAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK---LGRYPLLIVDEVGYIPF-------EPEAANLFFQ 183 (254)
T ss_pred HHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH---hccCCEEEEcccccCCC-------CHHHHHHHHH
Confidence 56777665 366666666666654321 111122222222 23378999999988742 1223344555
Q ss_pred HHHHhccCCCCeEEEEecCCcc
Q psy4165 77 FLYRTGEQSDKFMLVLASNTPQ 98 (242)
Q Consensus 77 lL~~l~~~~~~v~vI~tTn~~~ 98 (242)
++....+. + -+|.|||.+-
T Consensus 184 li~~r~~~--~-s~IitSn~~~ 202 (254)
T PRK06526 184 LVSSRYER--A-SLIVTSNKPF 202 (254)
T ss_pred HHHHHHhc--C-CEEEEcCCCH
Confidence 55443222 2 3777888763
No 261
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=90.98 E-value=8.6 Score=33.47 Aligned_cols=102 Identities=16% Similarity=0.232 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhCCC--cEEEEEecccccccccCCCc-----cchHHHHHHHHHHHHhc---cCCCCeEE--EEec---C
Q psy4165 31 TAIHKVFDWASSSRK--GLVLFIDEADAFLRKRSSET-----ISESLRATLNAFLYRTG---EQSDKFML--VLAS---N 95 (242)
Q Consensus 31 ~~l~~~f~~A~~~~~--p~Il~iDeiD~l~~~r~~~~-----~~~~~~~~l~~lL~~l~---~~~~~v~v--I~tT---n 95 (242)
..+..++++.+...+ |.++-||++..++....-.+ .+...-.+...|+..+. ...++.+| +++| +
T Consensus 140 ~~~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~ 219 (309)
T PF10236_consen 140 DVFQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSN 219 (309)
T ss_pred HHHHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccc
Confidence 457777887776554 89999999999997632211 22233355566665532 33445454 5655 3
Q ss_pred Ccc--cccHHHhcccc---------------------cEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 96 TPQ--QFDWAVNDRLD---------------------EMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 96 ~~~--~ld~al~~Rfd---------------------~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
.+. .++.++.++=. ..|+++..+.+|-+.+++.|...
T Consensus 220 ~~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~ 279 (309)
T PF10236_consen 220 APKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADS 279 (309)
T ss_pred ccCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 333 57777774322 27899999999999999999875
No 262
>PRK07952 DNA replication protein DnaC; Validated
Probab=90.87 E-value=0.53 Score=39.60 Aligned_cols=84 Identities=20% Similarity=0.184 Sum_probs=49.2
Q ss_pred hHHHHHHhc---CCcEEEEecCCccccc-c---hHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMG-S---SGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATL 74 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~-g---~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l 74 (242)
||.|||+++ |..++.++.+++.... + ........+++... ...+|+|||++.... +......+
T Consensus 115 La~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~---~~dlLvIDDig~~~~-------s~~~~~~l 184 (244)
T PRK07952 115 LAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS---NVDLLVIDEIGVQTE-------SRYEKVII 184 (244)
T ss_pred HHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc---cCCEEEEeCCCCCCC-------CHHHHHHH
Confidence 678888887 7788888888876532 1 11112334444433 268999999988631 22233455
Q ss_pred HHHHHHhccCCCCeEEEEecCCc
Q psy4165 75 NAFLYRTGEQSDKFMLVLASNTP 97 (242)
Q Consensus 75 ~~lL~~l~~~~~~v~vI~tTn~~ 97 (242)
.+++..= +..+--+|.|||..
T Consensus 185 ~~Ii~~R--y~~~~~tiitSNl~ 205 (244)
T PRK07952 185 NQIVDRR--SSSKRPTGMLTNSN 205 (244)
T ss_pred HHHHHHH--HhCCCCEEEeCCCC
Confidence 5554332 22234677788854
No 263
>PRK09183 transposase/IS protein; Provisional
Probab=90.64 E-value=0.67 Score=39.28 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=45.8
Q ss_pred hHHHHHHh---cCCcEEEEecCCccccc--chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHH
Q psy4165 2 FAKKLAHH---SGMDYAIMTGGDVAPMG--SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNA 76 (242)
Q Consensus 2 lA~aiA~e---~~~~~~~v~~~~l~~~~--g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~ 76 (242)
||.+|+.+ .|..+..++..++...+ ......+..+|.... .. |.+++|||++..... ......+-+
T Consensus 118 La~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~-~dlLiiDdlg~~~~~-------~~~~~~lf~ 188 (259)
T PRK09183 118 LAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MA-PRLLIIDEIGYLPFS-------QEEANLFFQ 188 (259)
T ss_pred HHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cC-CCEEEEcccccCCCC-------hHHHHHHHH
Confidence 67777655 46777777777765332 111223455565443 22 789999999765322 112223444
Q ss_pred HHHHhccCCCCeEEEEecCCc
Q psy4165 77 FLYRTGEQSDKFMLVLASNTP 97 (242)
Q Consensus 77 lL~~l~~~~~~v~vI~tTn~~ 97 (242)
++....+. + -+|.|||.+
T Consensus 189 li~~r~~~--~-s~iiTsn~~ 206 (259)
T PRK09183 189 VIAKRYEK--G-SMILTSNLP 206 (259)
T ss_pred HHHHHHhc--C-cEEEecCCC
Confidence 44333222 2 367788865
No 264
>PRK06921 hypothetical protein; Provisional
Probab=90.46 E-value=1.1 Score=38.17 Aligned_cols=52 Identities=15% Similarity=0.044 Sum_probs=29.4
Q ss_pred hHHHHHHhc----CCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccc
Q psy4165 2 FAKKLAHHS----GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADA 56 (242)
Q Consensus 2 lA~aiA~e~----~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~ 56 (242)
|+.|||+++ |..+++++..++..........+...+.... ...+|+|||++.
T Consensus 133 La~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~---~~dlLiIDDl~~ 188 (266)
T PRK06921 133 LLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMK---KVEVLFIDDLFK 188 (266)
T ss_pred HHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhc---CCCEEEEecccc
Confidence 678888874 6777888776654322111111222222222 268999999944
No 265
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=89.89 E-value=5 Score=39.66 Aligned_cols=99 Identities=11% Similarity=0.098 Sum_probs=58.8
Q ss_pred cEEEEecCCcccccchHHHHHHHHHHHHHh--CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEE
Q psy4165 13 DYAIMTGGDVAPMGSSGVTAIHKVFDWASS--SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFML 90 (242)
Q Consensus 13 ~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~--~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~v 90 (242)
+++.++.+++........-.+..+|..... ..+|.++++||....+. .......+..++..+.+.+ ..+
T Consensus 608 ~~~~fdl~~l~~~~~~~~~vl~yl~~ri~~~~~g~p~il~iDE~w~~L~-------~~~~~~~i~~~lk~~RK~~--~~~ 678 (800)
T PRK13898 608 RVFGFEMGELLKDPVSLAPVLLYLFHRISISLDGTPSMIVLDEAWALID-------NPVFAPKIKDWLKVLRKLN--TFV 678 (800)
T ss_pred cEEEEEchhhcCChhhHHHHHHHHHHHHHHHhcCCCcEEEEeCChhhCC-------CHHHHHHHHHHHHHHHHcC--CEE
Confidence 455566666654311112344455555431 23499999999998874 1234445566666664333 367
Q ss_pred EEecCCccccc-----HHHhcccccEEEeCCCCHH
Q psy4165 91 VLASNTPQQFD-----WAVNDRLDEMVEFPLPTLN 120 (242)
Q Consensus 91 I~tTn~~~~ld-----~al~~Rfd~~i~~~~P~~~ 120 (242)
|.+|..++.+. .+++.-....|.+|.|+..
T Consensus 679 i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn~~a~ 713 (800)
T PRK13898 679 IFATQSVEDASKSAISDTLVQQTATQIFLPNLKAT 713 (800)
T ss_pred EEEeCCHHHHHhChhHHHHHHhCCeEEEcCChhhH
Confidence 77887776644 4555677878888877643
No 266
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=89.27 E-value=1 Score=41.13 Aligned_cols=85 Identities=16% Similarity=0.266 Sum_probs=52.0
Q ss_pred HHHHHHHHHHh---CCCc-EEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc-
Q psy4165 32 AIHKVFDWASS---SRKG-LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND- 106 (242)
Q Consensus 32 ~l~~~f~~A~~---~~~p-~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~- 106 (242)
.|.++|+..-+ ..+| -|+||||.+.+|... +......+.+....+ .+.+|-|...|.+|.+||..+++
T Consensus 238 LLsELfe~LPEvGD~dkPklVfFfDEAHLLF~da-----~kall~~ieqvvrLI--RSKGVGv~fvTQ~P~DiP~~VL~Q 310 (502)
T PF05872_consen 238 LLSELFEQLPEVGDLDKPKLVFFFDEAHLLFNDA-----PKALLDKIEQVVRLI--RSKGVGVYFVTQNPTDIPDDVLGQ 310 (502)
T ss_pred HHHHHHHhCccCCCCCCceEEEEEechhhhhcCC-----CHHHHHHHHHHHHHh--hccCceEEEEeCCCCCCCHHHHHh
Confidence 56677775443 3345 567799999998532 222223334444334 35567888889999999999994
Q ss_pred ---ccccEEEeCCCCHHHHHHH
Q psy4165 107 ---RLDEMVEFPLPTLNERERL 125 (242)
Q Consensus 107 ---Rfd~~i~~~~P~~~~R~~I 125 (242)
|..+.+.-- ++.+++.+
T Consensus 311 LGnrIQHaLRAf--TP~DqKav 330 (502)
T PF05872_consen 311 LGNRIQHALRAF--TPKDQKAV 330 (502)
T ss_pred hhhHHHHHHhcC--CHhHHHHH
Confidence 555444433 44444443
No 267
>KOG1051|consensus
Probab=88.96 E-value=2.3 Score=42.17 Aligned_cols=80 Identities=14% Similarity=0.136 Sum_probs=48.7
Q ss_pred hHHHHHHhc---CCcEEEEecCCcc------c----ccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVA------P----MGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~------~----~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
||+|+|..+ .-.|+.++.+.+. + +.|.. ...++.+..+... -|||+|||||.- +.
T Consensus 607 lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e--~gg~LteavrrrP-~sVVLfdeIEkA---------h~ 674 (898)
T KOG1051|consen 607 LAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKE--EGGQLTEAVKRRP-YSVVLFEEIEKA---------HP 674 (898)
T ss_pred HHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccch--hHHHHHHHHhcCC-ceEEEEechhhc---------CH
Confidence 688999874 2368888877522 1 22332 3345566666443 699999999986 33
Q ss_pred HHHHHHHHHHHHhc------cC-----CCCeEEEEecCC
Q psy4165 69 SLRATLNAFLYRTG------EQ-----SDKFMLVLASNT 96 (242)
Q Consensus 69 ~~~~~l~~lL~~l~------~~-----~~~v~vI~tTn~ 96 (242)
. +++.|++-+| .+ -.+++||+|.|.
T Consensus 675 ~---v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 675 D---VLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred H---HHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 3 4444444443 11 125899999875
No 268
>KOG0481|consensus
Probab=88.63 E-value=7.3 Score=36.39 Aligned_cols=38 Identities=16% Similarity=-0.005 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 166 LSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 166 ~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
.|.++|+++++-++..+-..-....|.++.++|+.-+.
T Consensus 603 ITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~ 640 (729)
T KOG0481|consen 603 ITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLFQ 640 (729)
T ss_pred eeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHh
Confidence 46778888887666666555566777888888876664
No 269
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.50 E-value=4.5 Score=40.15 Aligned_cols=108 Identities=15% Similarity=0.227 Sum_probs=58.6
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccH-HHhcccccE
Q psy4165 33 IHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDW-AVNDRLDEM 111 (242)
Q Consensus 33 l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~-al~~Rfd~~ 111 (242)
+..++........|.+|+|||++.+- .......+..|+..+ ..++.+|.++...-.++- .+. .-+..
T Consensus 109 ~~~~~~~l~~~~~~~~lvlDD~h~~~--------~~~~~~~l~~l~~~~---~~~~~lv~~sR~~~~~~~~~l~-~~~~~ 176 (903)
T PRK04841 109 FAQLFIELADWHQPLYLVIDDYHLIT--------NPEIHEAMRFFLRHQ---PENLTLVVLSRNLPPLGIANLR-VRDQL 176 (903)
T ss_pred HHHHHHHHhcCCCCEEEEEeCcCcCC--------ChHHHHHHHHHHHhC---CCCeEEEEEeCCCCCCchHhHH-hcCcc
Confidence 44445444443459999999999883 122344555555443 344444445543212221 111 11224
Q ss_pred EEeC----CCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHH
Q psy4165 112 VEFP----LPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGR 169 (242)
Q Consensus 112 i~~~----~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~a 169 (242)
+++. +-+.++-.+++...+.. .++ ...+..+.+.|+|+-.+
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~-------------~~~----~~~~~~l~~~t~Gwp~~ 221 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSS-------------PIE----AAESSRLCDDVEGWATA 221 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCC-------------CCC----HHHHHHHHHHhCChHHH
Confidence 4555 55888888888765432 111 33447788888887543
No 270
>PRK12377 putative replication protein; Provisional
Probab=88.19 E-value=1.5 Score=36.89 Aligned_cols=84 Identities=17% Similarity=0.122 Sum_probs=45.4
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchH---HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSG---VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLN 75 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~---e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~ 75 (242)
||.|||+++ |..++.++.+++......+ .....++++... ...+|+|||+..... +......+.
T Consensus 117 La~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~---~~dLLiIDDlg~~~~-------s~~~~~~l~ 186 (248)
T PRK12377 117 LAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC---KVDLLVLDEIGIQRE-------TKNEQVVLN 186 (248)
T ss_pred HHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc---CCCEEEEcCCCCCCC-------CHHHHHHHH
Confidence 678888875 5678888877776522100 001223333332 368999999976532 122333444
Q ss_pred HHHHHhccCCCCeEEEEecCCc
Q psy4165 76 AFLYRTGEQSDKFMLVLASNTP 97 (242)
Q Consensus 76 ~lL~~l~~~~~~v~vI~tTn~~ 97 (242)
.++..- +.+..-+|.|||..
T Consensus 187 ~ii~~R--~~~~~ptiitSNl~ 206 (248)
T PRK12377 187 QIIDRR--TASMRSVGMLTNLN 206 (248)
T ss_pred HHHHHH--HhcCCCEEEEcCCC
Confidence 444332 22233567789864
No 271
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=87.25 E-value=11 Score=31.03 Aligned_cols=153 Identities=10% Similarity=0.113 Sum_probs=84.4
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhc--cCCCCeEEEEecCCcccccHHHh-cccc
Q psy4165 33 IHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAVN-DRLD 109 (242)
Q Consensus 33 l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~--~~~~~v~vI~tTn~~~~ld~al~-~Rfd 109 (242)
+.+.....+..+ |-+|++|- .+|...+ -+||.++. .....|++|-|.|..+.|-.+++ |-||
T Consensus 35 ~~ea~~~i~~~~-pDLILLDi---YmPd~~G-----------i~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~Gv~D 99 (224)
T COG4565 35 LEEAKMIIEEFK-PDLILLDI---YMPDGNG-----------IELLPELRSQHYPVDVIVITAASDMETIKEALRYGVVD 99 (224)
T ss_pred HHHHHHHHHhhC-CCEEEEee---ccCCCcc-----------HHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhcCchh
Confidence 333444445565 89999875 5554333 35777763 56678999999999999999999 8999
Q ss_pred cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHH----------hCCCCCHHHHHHHHHHHH
Q psy4165 110 EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAH----------VTEGLSGREIAKLGVAWQ 179 (242)
Q Consensus 110 ~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~----------~t~g~s~adi~~lv~~a~ 179 (242)
..|. |-..+--.+-|..|..+...-.. .-.++. ..++.+-. .-.|.+..-+..++.
T Consensus 100 YLiK--Pf~~eRl~~aL~~y~~~r~~l~~-----~~~~sQ----~~lD~l~~~~~k~~~~~~LPkGi~~~Tl~~i~~--- 165 (224)
T COG4565 100 YLIK--PFTFERLQQALTRYRQKRHALES-----HQQLSQ----KELDQLFNIQSKEQPPDDLPKGLDELTLQKVRE--- 165 (224)
T ss_pred heec--ceeHHHHHHHHHHHHHHHHHHhh-----hcccCH----HHHHHHHhccccccCcccCCCCcCHHHHHHHHH---
Confidence 5542 33444444555555543210000 000111 01111111 224677777776664
Q ss_pred HHHhhhcCCCccHHHHHHHHHHHHHhhhhhhhccccc
Q psy4165 180 ASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQ 216 (242)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 216 (242)
+ +......+|.+.+.+++.-.-...++-.+|....
T Consensus 166 ~--~~~~~~~~Taeela~~~giSRvTaRRYLeyl~~~ 200 (224)
T COG4565 166 A--LKEPDQELTAEELAQALGISRVTARRYLEYLVSN 200 (224)
T ss_pred H--HhCcCCccCHHHHHHHhCccHHHHHHHHHHHHhc
Confidence 1 1133446777777777665544444445554443
No 272
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=86.86 E-value=4.1 Score=37.49 Aligned_cols=64 Identities=34% Similarity=0.396 Sum_probs=42.7
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhc-------------cCCCCeEEEEecC-----------------
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG-------------EQSDKFMLVLASN----------------- 95 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~-------------~~~~~v~vI~tTn----------------- 95 (242)
..||||||+=.+ .+++++.|-.=|+ .+..++.+|++||
T Consensus 284 ~GVLFLDElpef------------~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~ 351 (490)
T COG0606 284 NGVLFLDELPEF------------KRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCS 351 (490)
T ss_pred CCEEEeeccchh------------hHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCC
Confidence 379999998555 3355666554443 1233567777877
Q ss_pred ------CcccccHHHhcccccEEEeCCCCHHH
Q psy4165 96 ------TPQQFDWAVNDRLDEMVEFPLPTLNE 121 (242)
Q Consensus 96 ------~~~~ld~al~~Rfd~~i~~~~P~~~~ 121 (242)
+...|...|++|||..++++.++..+
T Consensus 352 ~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e 383 (490)
T COG0606 352 PRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGE 383 (490)
T ss_pred HHHHHHHHHHhhHHHHhhhhheecccCCCHHH
Confidence 23455667779999999999887433
No 273
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=86.57 E-value=2.6 Score=31.78 Aligned_cols=59 Identities=15% Similarity=0.230 Sum_probs=33.0
Q ss_pred HHHHHhCCCcEEEEEecccccccccCC--CccchHHHHHHHHHHHHhccCCCCeEEEEecCCcc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSS--ETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQ 98 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~--~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~ 98 (242)
+..+.... |.+|+|||+..+...... ........+.+..++..+... ++.+|++++...
T Consensus 78 ~~~~~~~~-~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~vv~~~~~~~ 138 (165)
T cd01120 78 ERLRERGG-DDLIILDELTRLVRALREIREGYPGELDEELRELLERARKG--GVTVIFTLQVPS 138 (165)
T ss_pred HHHHhCCC-CEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcC--CceEEEEEecCC
Confidence 44455444 999999999998754321 111223445555555555433 455555554443
No 274
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=86.00 E-value=5.1 Score=39.59 Aligned_cols=98 Identities=17% Similarity=0.223 Sum_probs=59.3
Q ss_pred cEEEEecCCcccccchHHHHHHHHHHHHHh--CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEE
Q psy4165 13 DYAIMTGGDVAPMGSSGVTAIHKVFDWASS--SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFML 90 (242)
Q Consensus 13 ~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~--~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~v 90 (242)
.++.++.+++........-.+..+|..... ..+|.+|+|||+..++.. ......+..+++.+.+.+ .++
T Consensus 593 ~~~~fdl~~L~~~~~~~~~vl~yl~~ri~~~~~gr~~ii~iDEaw~~l~~-------~~~~~~i~~~~kt~RK~n--g~~ 663 (789)
T PRK13853 593 SITGFDMTHLLEYEEVCAPAAAYLLHRIGAMVDGRRFVMSCDEFRAYLLN-------PKFAAVVDKFLLTVRKNN--GML 663 (789)
T ss_pred CeEEEEchHhcCChhhHHHHHHHHHHHHHHhcCCCcEEEEEechhHHhCC-------HHHHHHHHHHHHHHHHcC--eEE
Confidence 355566656554211111233344444322 235999999999888752 224456667776665444 377
Q ss_pred EEecCCccccc-----HHHhcccccEEEeCCCCH
Q psy4165 91 VLASNTPQQFD-----WAVNDRLDEMVEFPLPTL 119 (242)
Q Consensus 91 I~tTn~~~~ld-----~al~~Rfd~~i~~~~P~~ 119 (242)
+++|..+.++- .+++.-.+.+|.+|.|..
T Consensus 664 ~~~TQs~~D~~~s~~~~~i~~n~~t~I~Lpn~~a 697 (789)
T PRK13853 664 ILATQQPEHVLESPLGASLVAQCMTKIFYPSPTA 697 (789)
T ss_pred EEecCCHHHHHcCchHHHHHHhCCeEEEcCCccc
Confidence 78887777664 345567888999988853
No 275
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=85.95 E-value=23 Score=30.97 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=71.0
Q ss_pred HHHHHHHHHhCC---CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCc---ccccHHHh-
Q psy4165 33 IHKVFDWASSSR---KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTP---QQFDWAVN- 105 (242)
Q Consensus 33 l~~~f~~A~~~~---~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~---~~ld~al~- 105 (242)
+.++++.+.... .+.+|++.+.+ ......+..++... .+..++| ...... ..+-..+.
T Consensus 66 ~~~~~~~~~t~slF~~~rlViv~~~~------------~~~~~~L~~~l~~~--~~~~~li-l~~~~~~~~~kl~k~~~~ 130 (343)
T PRK06585 66 PARLEDEANAISLFGGRRLIWVRAGS------------KNLAAALKALLESP--PGDAFIV-IEAGDLKKGSSLRKLFET 130 (343)
T ss_pred HHHHHHHHhCCCCCCCceEEEEECCc------------hhHHHHHHHHHcCC--CCCcEEE-EEcCCCCcccHHHHHHhc
Confidence 667777777642 35778887421 11122333343222 2333444 443322 12223332
Q ss_pred cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Q psy4165 106 DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYAS 185 (242)
Q Consensus 106 ~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~ 185 (242)
......+.+.+|+..+....++..+.+.+.. .+ ...+..|+..+.| .-..+.+-+. +...++.
T Consensus 131 ~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~----------i~----~~a~~~L~~~~g~-dl~~l~~Ele--KL~ly~~ 193 (343)
T PRK06585 131 AAYAAAIPCYADDERDLARLIDDELAEAGLR----------IT----PDARALLVALLGG-DRLASRNEIE--KLALYAH 193 (343)
T ss_pred CCCeeEEecCCCCHHHHHHHHHHHHHHCCCC----------CC----HHHHHHHHHHhCC-CHHHHHHHHH--HHHHhcC
Confidence 1123467778899999999999999875433 22 3334667777543 3334444333 3444544
Q ss_pred cCCCccHHHHHHH
Q psy4165 186 EDGVLTEAMVMSK 198 (242)
Q Consensus 186 ~~~~~~~~~~~~a 198 (242)
..+.+|.+++.+.
T Consensus 194 ~~~~It~edV~~l 206 (343)
T PRK06585 194 GKGEITLDDVRAV 206 (343)
T ss_pred CCCCCCHHHHHHH
Confidence 4557888777665
No 276
>PRK08939 primosomal protein DnaI; Reviewed
Probab=85.06 E-value=2.4 Score=36.94 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=47.5
Q ss_pred hHHHHHHhc---CCcEEEEecCCccccc--chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHH-HHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMG--SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLR-ATLN 75 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~--g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~-~~l~ 75 (242)
||.|||+++ |.++..+..+++.... .-....+.+.+...+ +..+|+|||+..-.. +...+ .++.
T Consensus 172 La~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~---~~dlLiIDDiG~e~~-------s~~~~~~ll~ 241 (306)
T PRK08939 172 LLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK---EAPVLMLDDIGAEQM-------SSWVRDEVLG 241 (306)
T ss_pred HHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc---CCCEEEEecCCCccc-------cHHHHHHHHH
Confidence 678888886 7888888887775432 111112344444444 268999999865421 22222 3444
Q ss_pred HHHHHhccCCCCeEEEEecCCc
Q psy4165 76 AFLYRTGEQSDKFMLVLASNTP 97 (242)
Q Consensus 76 ~lL~~l~~~~~~v~vI~tTn~~ 97 (242)
.++..= ..++.-+|.|||.+
T Consensus 242 ~Il~~R--~~~~~~ti~TSNl~ 261 (306)
T PRK08939 242 VILQYR--MQEELPTFFTSNFD 261 (306)
T ss_pred HHHHHH--HHCCCeEEEECCCC
Confidence 444321 12344788899865
No 277
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=84.45 E-value=24 Score=33.10 Aligned_cols=119 Identities=14% Similarity=0.202 Sum_probs=67.0
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCC-CeEEEEe-c------CCcc--------cccHHHh--cc
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSD-KFMLVLA-S------NTPQ--------QFDWAVN--DR 107 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~-~v~vI~t-T------n~~~--------~ld~al~--~R 107 (242)
+.||+|||+=.++... ....+..+.++ +..... ++|+|.| | |... .+++.++ .+
T Consensus 133 ~kvILVEDlPN~~~~~-----~~~f~~~L~~~---l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~ 204 (519)
T PF03215_consen 133 KKVILVEDLPNVFHRD-----TSRFREALRQY---LRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPG 204 (519)
T ss_pred ceEEEeeccccccchh-----HHHHHHHHHHH---HHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCC
Confidence 7899999998765421 12223333333 333333 7777777 1 2111 4677777 34
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAY 183 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~ 183 (242)
. .+|.|.+-...--..-|+..+....... .+ ..... +....++.|+.. +.+||+.+++..+..+.
T Consensus 205 i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~--~~--~~~~p--~~~~~l~~I~~~----s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 205 I-TRIKFNPIAPTFMKKALKRILKKEARSS--SG--KNKVP--DKQSVLDSIAES----SNGDIRSAINNLQFWCL 269 (519)
T ss_pred c-eEEEecCCCHHHHHHHHHHHHHHHhhhh--cC--CccCC--ChHHHHHHHHHh----cCchHHHHHHHHHHHhc
Confidence 4 4899998888877777777765420000 00 01111 111224677766 55799999986665555
No 278
>PRK06835 DNA replication protein DnaC; Validated
Probab=83.76 E-value=3.5 Score=36.27 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=33.0
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccch----HHHHHHHHHHHHHhCCCcEEEEEecccccc
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSS----GVTAIHKVFDWASSSRKGLVLFIDEADAFL 58 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~----~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~ 58 (242)
||.|||+++ |..+++++..++...... ........++.... .-+|+|||+....
T Consensus 199 La~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~---~DLLIIDDlG~e~ 259 (329)
T PRK06835 199 LSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN---CDLLIIDDLGTEK 259 (329)
T ss_pred HHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc---CCEEEEeccCCCC
Confidence 688888875 678888888887653211 11111222333332 5799999997653
No 279
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=82.08 E-value=3.3 Score=39.21 Aligned_cols=120 Identities=16% Similarity=0.218 Sum_probs=62.0
Q ss_pred hHHHHHHhcC--CcEEEEecCCcccccchHH--HHHHHHHHHHHh--------CCCcEEEEEecccccccccCCCccchH
Q psy4165 2 FAKKLAHHSG--MDYAIMTGGDVAPMGSSGV--TAIHKVFDWASS--------SRKGLVLFIDEADAFLRKRSSETISES 69 (242)
Q Consensus 2 lA~aiA~e~~--~~~~~v~~~~l~~~~g~~e--~~l~~~f~~A~~--------~~~p~Il~iDeiD~l~~~r~~~~~~~~ 69 (242)
|||+|=...+ -||+.|+|..+-...-++| ..+.-.|.-|+. .+..-.+|+|||..+ .-.
T Consensus 352 laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIgd~---------p~~ 422 (606)
T COG3284 352 LARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIGDM---------PLA 422 (606)
T ss_pred HHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHhhhc---------hHH
Confidence 5666655544 3899999876642110100 011111221211 112578999999776 233
Q ss_pred HHHHHHHHHHH-----hccC--CCCeEEEEecCCcccccHHHh-ccc---------ccEEEeCCC-CHHHHHHHHHHHHh
Q psy4165 70 LRATLNAFLYR-----TGEQ--SDKFMLVLASNTPQQFDWAVN-DRL---------DEMVEFPLP-TLNERERLVRLYFD 131 (242)
Q Consensus 70 ~~~~l~~lL~~-----l~~~--~~~v~vI~tTn~~~~ld~al~-~Rf---------d~~i~~~~P-~~~~R~~Il~~~l~ 131 (242)
.+.-+...|++ ++.. .=.|=||+||++. |-.-+. ||| ...|++|+. +..+|..+|.+++.
T Consensus 423 ~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d--l~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~ 500 (606)
T COG3284 423 LQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD--LAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILK 500 (606)
T ss_pred HHHHHHHHHhhCceeccCCcceeEEEEEEeccCcC--HHHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHH
Confidence 33333334433 1211 1137889999874 332222 666 334555544 55666777888877
Q ss_pred c
Q psy4165 132 K 132 (242)
Q Consensus 132 ~ 132 (242)
+
T Consensus 501 ~ 501 (606)
T COG3284 501 R 501 (606)
T ss_pred H
Confidence 5
No 280
>KOG0479|consensus
Probab=81.64 E-value=2.7 Score=39.74 Aligned_cols=43 Identities=21% Similarity=0.035 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 163 TEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 163 t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
|.-.|++.|+.|++-+.|.+.+.-...++.+|-+.|++-....
T Consensus 603 t~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll~fA 645 (818)
T KOG0479|consen 603 TSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLLRFA 645 (818)
T ss_pred ccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHHHHH
Confidence 3346888999999866666666666678888888886655433
No 281
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=81.55 E-value=9.5 Score=39.37 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=43.9
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHH
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERER 124 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~ 124 (242)
++.+|++||+|.. ..+..+....+....+.-||.||.+...+. ....+..++++.|+.++..+
T Consensus 296 krvLLVLDdv~~~--------------~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~---~~~~~~~~~v~~l~~~ea~~ 358 (1153)
T PLN03210 296 RKVLIFIDDLDDQ--------------DVLDALAGQTQWFGSGSRIIVITKDKHFLR---AHGIDHIYEVCLPSNELALE 358 (1153)
T ss_pred CeEEEEEeCCCCH--------------HHHHHHHhhCccCCCCcEEEEEeCcHHHHH---hcCCCeEEEecCCCHHHHHH
Confidence 3799999998753 122333222222223345666776543221 13467899999999999999
Q ss_pred HHHHHHh
Q psy4165 125 LVRLYFD 131 (242)
Q Consensus 125 Il~~~l~ 131 (242)
++..+.-
T Consensus 359 LF~~~Af 365 (1153)
T PLN03210 359 MFCRSAF 365 (1153)
T ss_pred HHHHHhc
Confidence 9988864
No 282
>KOG0482|consensus
Probab=80.57 E-value=1.1 Score=41.61 Aligned_cols=84 Identities=18% Similarity=0.166 Sum_probs=48.1
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHH-Hh-ccCCCCeEEEEecCCcc-------------cccHHHhccccc
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLY-RT-GEQSDKFMLVLASNTPQ-------------QFDWAVNDRLDE 110 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~-~l-~~~~~~v~vI~tTn~~~-------------~ld~al~~Rfd~ 110 (242)
..|-.|||+|.+...... ..++.+.+..-.+-+ .+ ..-+.+.-++|++|..+ .||.||++|||.
T Consensus 440 ~GICCIDEfDKM~e~DRt-AIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDl 518 (721)
T KOG0482|consen 440 GGICCIDEFDKMDESDRT-AIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDL 518 (721)
T ss_pred CceEeehhhhhhhhhhhH-HHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhh
Confidence 468899999998642111 011111111111100 01 12244567778887654 689999999997
Q ss_pred EEEeC-CCCHHHHHHHHHHHH
Q psy4165 111 MVEFP-LPTLNERERLVRLYF 130 (242)
Q Consensus 111 ~i~~~-~P~~~~R~~Il~~~l 130 (242)
..-+. .|+.+.=..+-++.+
T Consensus 519 l~Li~D~pdrd~D~~LA~HiT 539 (721)
T KOG0482|consen 519 LWLIQDRPDRDNDLRLAQHIT 539 (721)
T ss_pred hhhhccCCcccchHHHHHHhH
Confidence 66554 787777666666644
No 283
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=79.96 E-value=15 Score=36.06 Aligned_cols=65 Identities=18% Similarity=0.298 Sum_probs=43.9
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc-----HHHhcccccEEEeCCCC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD-----WAVNDRLDEMVEFPLPT 118 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld-----~al~~Rfd~~i~~~~P~ 118 (242)
+|.+++|||+..++.. ......+..++..+.+++. .++.+|..+.++. .+++.-.+.+|.++.|.
T Consensus 629 ~~~~i~iDEa~~ll~~-------~~~~~~i~~~~r~~RK~~~--~~~~~TQ~~~d~~~~~~~~~il~n~~~ki~l~~~~ 698 (785)
T TIGR00929 629 RPFLIIIDEAWQYLGN-------PVFAAKIRDWLKTLRKANG--IVVLATQSINDALGSRIADSILEQCATKIFLPNPE 698 (785)
T ss_pred CCeEEEEechhhhcCC-------HHHHHHHHHHHHHHHHcCC--EEEEEeCCHHHHhcCchHHHHHHhCCEEEEcCCCC
Confidence 4899999999999752 2345566777777765543 6677787777653 34455667777777663
No 284
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=79.49 E-value=15 Score=31.56 Aligned_cols=108 Identities=21% Similarity=0.252 Sum_probs=59.8
Q ss_pred CCcEEEEEecccccccccCCCc-cchHHHHHHHHHHHHhccCCC---CeEEEEec-----------CCcccccHHHhccc
Q psy4165 44 RKGLVLFIDEADAFLRKRSSET-ISESLRATLNAFLYRTGEQSD---KFMLVLAS-----------NTPQQFDWAVNDRL 108 (242)
Q Consensus 44 ~~p~Il~iDeiD~l~~~r~~~~-~~~~~~~~l~~lL~~l~~~~~---~v~vI~tT-----------n~~~~ld~al~~Rf 108 (242)
++|.||+|||-|..+...-..+ ........+..|+..+...+. .+++=|.+ |..+.+. +..+|
T Consensus 142 ~~kvvlLIDEYD~p~~~~~~~~e~~~~~~~~lr~ff~~~k~~~~~l~~~~iTGi~~i~k~si~S~lNn~~~~s--~~~~f 219 (284)
T PF09820_consen 142 GKKVVLLIDEYDKPINDALSNGEYYEEMREFLRNFFSVLKKDNPYLRFAFITGILPISKESIFSGLNNLEDIS--LDPRF 219 (284)
T ss_pred CCceEEEecCccHHHHHHhhhhHHHHHHHHHHHHHHHHhcccchhhhhhheeccchhhhccCccccCCceecc--cchhH
Confidence 3589999999999886543322 223334444445444322111 12222211 2222221 11355
Q ss_pred ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHH
Q psy4165 109 DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGR 169 (242)
Q Consensus 109 d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~a 169 (242)
+..+= -+.++-..+++.++...... .+.+..++.+-+..+||.-+
T Consensus 220 ~~~~G---FT~~Ev~~ll~~~~~~~~~~-------------~~~~~~~~~lk~wYdGY~F~ 264 (284)
T PF09820_consen 220 SEYFG---FTEEEVETLLKYYIENLAEE-------------QDREELLEELKEWYDGYHFG 264 (284)
T ss_pred hhhcC---cCHHHHHHHHHHHHHHhhhc-------------cchHHHHHHHHHHcCCcccC
Confidence 54333 38899999999998764221 13355668888898998654
No 285
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=79.19 E-value=5.9 Score=32.73 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhc--cCCCCeEEEEecCCcccccHHHh
Q psy4165 28 SGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAVN 105 (242)
Q Consensus 28 ~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~--~~~~~v~vI~tTn~~~~ld~al~ 105 (242)
...+.|..+.+.-+.+. -.||+||-+..++... ....+.+|++.+. ...++ ++|. |=+|..+|++.+
T Consensus 107 ~~~~~L~~l~~~~k~~~-~dViIIDSls~~~~~~--------~~~~vl~fm~~~r~l~d~gK-vIil-Tvhp~~l~e~~~ 175 (235)
T COG2874 107 SARKLLDLLLEFIKRWE-KDVIIIDSLSAFATYD--------SEDAVLNFMTFLRKLSDLGK-VIIL-TVHPSALDEDVL 175 (235)
T ss_pred HHHHHHHHHHhhHHhhc-CCEEEEecccHHhhcc--------cHHHHHHHHHHHHHHHhCCC-EEEE-EeChhhcCHHHH
Confidence 45567888888888777 7999999999887542 1234556666653 22444 3333 556899999998
Q ss_pred cc----cccEEEeC
Q psy4165 106 DR----LDEMVEFP 115 (242)
Q Consensus 106 ~R----fd~~i~~~ 115 (242)
.| .|..+++.
T Consensus 176 ~rirs~~d~~l~L~ 189 (235)
T COG2874 176 TRIRSACDVYLRLR 189 (235)
T ss_pred HHHHHhhheeEEEE
Confidence 55 35555543
No 286
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=78.37 E-value=54 Score=29.92 Aligned_cols=95 Identities=16% Similarity=0.257 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhc--cCCCCeEEEEecCCcccc--------
Q psy4165 31 TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQF-------- 100 (242)
Q Consensus 31 ~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~--~~~~~v~vI~tTn~~~~l-------- 100 (242)
+.+..++..+- .. +-+|+|||++.+..-+.... -......+.++++.++ ...+-.++++.|. +-+
T Consensus 227 k~L~~~lr~aG-y~-GLlI~lDE~e~l~kl~~~~~-R~~~ye~lr~lidd~~~G~~~gL~~~~~gTP--ef~eD~rrGv~ 301 (416)
T PF10923_consen 227 KGLARFLRDAG-YK-GLLILLDELENLYKLRNDQA-REKNYEALRQLIDDIDQGRAPGLYFVFAGTP--EFFEDGRRGVY 301 (416)
T ss_pred HHHHHHHHHcC-CC-ceEEEEechHHHHhcCChHH-HHHHHHHHHHHHHHHhcCCCCceEEEEeeCH--HHhhCcccccc
Confidence 44444454544 44 79999999999986554321 1122233344444443 2233334444442 222
Q ss_pred -cHHHhccc--------------ccEEEeCCCCHHHHHHHHHHHH
Q psy4165 101 -DWAVNDRL--------------DEMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 101 -d~al~~Rf--------------d~~i~~~~P~~~~R~~Il~~~l 130 (242)
.+||..|. .-.|.+++.+.++-..++....
T Consensus 302 sY~AL~~RL~~~~~~~~~~~n~~~pvIrL~~l~~eel~~l~~klr 346 (416)
T PF10923_consen 302 SYEALAQRLAEEFFADDGFDNLRAPVIRLQPLTPEELLELLEKLR 346 (416)
T ss_pred ccHHHHHHHhccccccccccCccCceecCCCCCHHHHHHHHHHHH
Confidence 34555331 3356666667777666655543
No 287
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=78.36 E-value=14 Score=28.57 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=44.0
Q ss_pred HHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecC-CcccccHHHh--cccc
Q psy4165 36 VFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASN-TPQQFDWAVN--DRLD 109 (242)
Q Consensus 36 ~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn-~~~~ld~al~--~Rfd 109 (242)
++..+... ++..+|++.+...| .+.. .......|...+...+..+++|..++ ..+.=.+-.. ..-.
T Consensus 45 l~~~~~s~slF~~~klvii~~~~~l-~~~~-------~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~ 116 (172)
T PF06144_consen 45 LLEELQSPSLFGDKKLVIIKNAPFL-KDKL-------KKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQA 116 (172)
T ss_dssp HTTTSTTTTSSSSEEEEEEE------TT-S--------TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTE
T ss_pred HHHHHhcCCccCCCeEEEEecCccc-cccc-------cHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhccc
Confidence 45554432 23579999998666 1111 12234556666665455555555554 3332112111 3344
Q ss_pred cEEEeCCCCHHHHHHHHHHHHhcccc
Q psy4165 110 EMVEFPLPTLNERERLVRLYFDKFVL 135 (242)
Q Consensus 110 ~~i~~~~P~~~~R~~Il~~~l~~~~~ 135 (242)
..++++.|+..+....++..+++.+.
T Consensus 117 ~~~~~~~~~~~~~~~~i~~~~~~~g~ 142 (172)
T PF06144_consen 117 IVIECKKPKEQELPRWIKERAKKNGL 142 (172)
T ss_dssp EEEEE----TTTHHHHHHHHHHHTT-
T ss_pred ceEEecCCCHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999987543
No 288
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=77.91 E-value=10 Score=30.38 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 28 SGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 28 ~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
.+|+..-.+....+- . |.|+++||+-+-+ ....++.++.++..+-. ..++-|++.|..++. + .+.
T Consensus 136 GGE~QriAliR~Lq~-~-P~ILLLDE~TsAL--------D~~nkr~ie~mi~~~v~-~q~vAv~WiTHd~dq---a-~rh 200 (223)
T COG4619 136 GGEKQRIALIRNLQF-M-PKILLLDEITSAL--------DESNKRNIEEMIHRYVR-EQNVAVLWITHDKDQ---A-IRH 200 (223)
T ss_pred chHHHHHHHHHHhhc-C-CceEEecCchhhc--------ChhhHHHHHHHHHHHhh-hhceEEEEEecChHH---H-hhh
Confidence 345666666666663 3 9999999997765 23345566666655422 446788888887642 2 356
Q ss_pred cccEEEeCC
Q psy4165 108 LDEMVEFPL 116 (242)
Q Consensus 108 fd~~i~~~~ 116 (242)
||+.|.+-+
T Consensus 201 a~k~itl~~ 209 (223)
T COG4619 201 ADKVITLQP 209 (223)
T ss_pred hheEEEecc
Confidence 777777754
No 289
>PHA00350 putative assembly protein
Probab=77.75 E-value=3.5 Score=37.22 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=41.3
Q ss_pred cEEEEEecccccccccCCCccch--------------HHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISE--------------SLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEM 111 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~--------------~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~ 111 (242)
.++|+|||+..+++.+....... ....-..+++...... +.=+|.+|-.+..||..++++.+..
T Consensus 82 gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH~--G~DIiliTQ~~~~Id~~iR~lvE~~ 159 (399)
T PHA00350 82 GALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHY--NWDIILLTPNIRKIHSDIRAMIEMT 159 (399)
T ss_pred CCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhccc--CceEEEEeCCHHHhhHHHHHhhhhe
Confidence 69999999999999875411100 0012233344333333 4456777999999999999766653
Q ss_pred E
Q psy4165 112 V 112 (242)
Q Consensus 112 i 112 (242)
+
T Consensus 160 ~ 160 (399)
T PHA00350 160 Y 160 (399)
T ss_pred E
Confidence 3
No 290
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=77.53 E-value=34 Score=30.94 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=59.0
Q ss_pred HHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhcc
Q psy4165 4 KKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGE 83 (242)
Q Consensus 4 ~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~ 83 (242)
+-+.....-.++.++-.++....-+. ......+..+.... .+.||||||..+- ...+.+..+. |.
T Consensus 55 ~~l~~~~~~~~iy~~~~d~~~~~~~l-~d~~~~~~~~~~~~-~~yifLDEIq~v~----------~W~~~lk~l~---d~ 119 (398)
T COG1373 55 KLLIKGLLEEIIYINFDDLRLDRIEL-LDLLRAYIELKERE-KSYIFLDEIQNVP----------DWERALKYLY---DR 119 (398)
T ss_pred HHHHhhCCcceEEEEecchhcchhhH-HHHHHHHHHhhccC-CceEEEecccCch----------hHHHHHHHHH---cc
Confidence 33344333335555554543322111 22233333333222 5899999999872 2344444443 32
Q ss_pred CCCCeEEEEecCCc--ccccHHHhcccccEEEeCCCCHHHHHH-------------HHHHHHhc
Q psy4165 84 QSDKFMLVLASNTP--QQFDWAVNDRLDEMVEFPLPTLNERER-------------LVRLYFDK 132 (242)
Q Consensus 84 ~~~~v~vI~tTn~~--~~ld~al~~Rfd~~i~~~~P~~~~R~~-------------Il~~~l~~ 132 (242)
...++++.+++... ..+-+.+.||.. .+++.|-+..+... .++.|+..
T Consensus 120 ~~~~v~itgsss~ll~~~~~~~L~GR~~-~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~~Yl~~ 182 (398)
T COG1373 120 GNLDVLITGSSSSLLSKEISESLAGRGK-DLELYPLSFREFLKLKGEEIEPSKLELLFEKYLET 182 (398)
T ss_pred ccceEEEECCchhhhccchhhhcCCCce-eEEECCCCHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 22245555544322 233344449964 88888889998865 57777753
No 291
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=77.03 E-value=6.5 Score=35.08 Aligned_cols=40 Identities=23% Similarity=0.136 Sum_probs=25.6
Q ss_pred EEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCc
Q psy4165 47 LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTP 97 (242)
Q Consensus 47 ~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~ 97 (242)
.||+|||+..-- -..--++..|+..+- ..++++|+|+|++
T Consensus 129 ~lLcfDEF~V~D---------iaDAmil~rLf~~l~--~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 129 RLLCFDEFQVTD---------IADAMILKRLFEALF--KRGVVLVATSNRP 168 (362)
T ss_pred CEEEEeeeeccc---------hhHHHHHHHHHHHHH--HCCCEEEecCCCC
Confidence 599999997641 112234455555542 5678999999874
No 292
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=76.83 E-value=8.3 Score=31.13 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=41.3
Q ss_pred HHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCC
Q psy4165 38 DWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLP 117 (242)
Q Consensus 38 ~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P 117 (242)
..|-... |.++++||--.=+ ....+..+..+|.++... +..+|.+|..++.++. +..+.+..|
T Consensus 139 a~al~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~------~~~~~~~~~ 201 (207)
T PRK13539 139 ARLLVSN-RPIWILDEPTAAL--------DAAAVALFAELIRAHLAQ--GGIVIAATHIPLGLPG------ARELDLGPF 201 (207)
T ss_pred HHHHhcC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHHHC--CCEEEEEeCCchhhcc------CcEEeecCc
Confidence 3444344 9999999965432 233455556666665322 3467888888877764 667777776
Q ss_pred CHH
Q psy4165 118 TLN 120 (242)
Q Consensus 118 ~~~ 120 (242)
+.+
T Consensus 202 ~~~ 204 (207)
T PRK13539 202 AAE 204 (207)
T ss_pred cCC
Confidence 543
No 293
>PRK07914 hypothetical protein; Reviewed
Probab=76.40 E-value=51 Score=28.62 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=65.6
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCC-CeEEEEecCCcccccHHHh---cccc-cEEEeCCC-C
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSD-KFMLVLASNTPQQFDWAVN---DRLD-EMVEFPLP-T 118 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~-~v~vI~tTn~~~~ld~al~---~Rfd-~~i~~~~P-~ 118 (242)
++-+|++++...+. ......|...+...+. .++|+.+++.. -...+. .... ..+++.+| +
T Consensus 64 ~rRlV~v~~~~~~~------------~~~~~~l~~~l~~~~~~t~lil~~~~~~--~~kk~~K~L~k~g~~~v~~~~~~~ 129 (320)
T PRK07914 64 EERVVVLEAAAEAG------------KDAAALILSAAADLPPGTVLVVVHSGGG--RAKALANQLRKLGAEVHPCARITK 129 (320)
T ss_pred CceEEEEeChHhcc------------HHHHHHHHHHHhCCCCCeEEEEEecCCc--chhHHHHHHHHCCCEEEecCCCCC
Confidence 46788888853321 1123345445543333 45555443322 222322 2223 37788888 9
Q ss_pred HHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 119 LNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 119 ~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
..+....++..+++.+... + ...++.|+.++. .|+..+.++.+... ....+.+|.+++++.
T Consensus 130 ~~~l~~wi~~~a~~~g~~i-------------~-~~A~~~L~~~~g----~dl~~l~~EleKL~-~~~~~~It~e~V~~~ 190 (320)
T PRK07914 130 AAERADFVRKEFRSLRVKV-------------D-DDTVTALLDAVG----SDLRELASACSQLV-ADTGGAVDAAAVRRY 190 (320)
T ss_pred HHHHHHHHHHHHHHcCCCC-------------C-HHHHHHHHHHHC----ccHHHHHHHHHHHh-cCCCCCcCHHHHHHH
Confidence 9999999999998754331 1 223355555543 46666665444332 222356777777665
Q ss_pred H
Q psy4165 199 V 199 (242)
Q Consensus 199 ~ 199 (242)
+
T Consensus 191 v 191 (320)
T PRK07914 191 H 191 (320)
T ss_pred c
Confidence 3
No 294
>PRK05629 hypothetical protein; Validated
Probab=76.04 E-value=52 Score=28.52 Aligned_cols=121 Identities=11% Similarity=0.113 Sum_probs=65.0
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccC-CCCeEEEEecCCccc---ccHHHhcccccEEEeCCCCHH
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQ-SDKFMLVLASNTPQQ---FDWAVNDRLDEMVEFPLPTLN 120 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~-~~~v~vI~tTn~~~~---ld~al~~Rfd~~i~~~~P~~~ 120 (242)
++-+|++++.+... . .....++..+... ++.++||.+.+ .+. +-+.+ ......+++.+|...
T Consensus 64 ~~rlV~v~~~~~~~---------~---~~~~~l~~~l~~~~~~~~Lil~~~~-~~~~kk~~K~l-~k~~~~ve~~~~~~~ 129 (318)
T PRK05629 64 EDRVIVLTNMEQAG---------K---EPTDLALSAAVDPSPGIYLIIMHSG-GGRTKSMVPKL-EKIAVVHEAAKLKPR 129 (318)
T ss_pred CceEEEEeChHhcC---------h---hHHHHHHHHHhCCCCCeEEEEEcCC-cchhhHHHHHH-HhcceEeeCCCCCHH
Confidence 36788888865421 0 1234455555433 33345544433 222 11133 334457888889999
Q ss_pred HHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 121 ~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
+....+...+++.+.. .+ ...++.|+.++. .|+..+.++....+. ...+.+|.+++++.
T Consensus 130 ~l~~wi~~~~~~~g~~----------i~----~~A~~~L~~~~g----~dl~~l~~EleKL~~-~~~~~It~e~V~~~ 188 (318)
T PRK05629 130 ERPGWVTQEFKNHGVR----------PT----PDVVHALLEGVG----SDLRELASAISQLVE-DTQGNVTVEKVRAY 188 (318)
T ss_pred HHHHHHHHHHHHcCCC----------CC----HHHHHHHHHHHC----ccHHHHHHHHHHHHh-cCCCCcCHHHHHHH
Confidence 9999999998874433 11 223355666643 344444443333222 22456777777665
No 295
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=75.69 E-value=20 Score=35.59 Aligned_cols=97 Identities=15% Similarity=0.215 Sum_probs=58.5
Q ss_pred cEEEEecCCcccccchHHHHHHHHHHHHHh--CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEE
Q psy4165 13 DYAIMTGGDVAPMGSSGVTAIHKVFDWASS--SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFML 90 (242)
Q Consensus 13 ~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~--~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~v 90 (242)
+++.++.+++.+......-.+..+|..... ..+|.++++||.-..+. .......+..++..+.+. +..+
T Consensus 601 ~~~~fdl~~l~~~~~~~~~vl~~l~~~i~~~~~~~p~illlDE~~~~Ld-------~~~~~~~i~~~lk~~RK~--~~~~ 671 (811)
T PRK13873 601 DVQAFEMEGLMGTKAAAPAVLSYLFHRIEDRFDGRPTLLILDEAWLFLD-------DPVFAAQLREWLKTLRKK--NVSV 671 (811)
T ss_pred CEEEEEChhhccCchHHHHHHHHHHHHHHHHhcCCCcEEEEcChhhhCC-------CHHHHHHHHHHHHHHHHc--CCEE
Confidence 566777777765321112334445544332 12499999999888763 123455566666666543 3366
Q ss_pred EEecCCccccc-----HHHhcccccEEEeCCCC
Q psy4165 91 VLASNTPQQFD-----WAVNDRLDEMVEFPLPT 118 (242)
Q Consensus 91 I~tTn~~~~ld-----~al~~Rfd~~i~~~~P~ 118 (242)
|.+|..+..+. .+++.-.+..|.+|.|.
T Consensus 672 i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~~ 704 (811)
T PRK13873 672 IFATQSLADIDGSAIAPAIIESCPTRIFLPNER 704 (811)
T ss_pred EEEECCHHHHhcCchHHHHHHhCCeeEEcCCch
Confidence 67777777654 34556677888888775
No 296
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=75.48 E-value=55 Score=28.55 Aligned_cols=91 Identities=15% Similarity=0.201 Sum_probs=48.2
Q ss_pred HHHHHHHHHhCC---CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhccc-
Q psy4165 33 IHKVFDWASSSR---KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRL- 108 (242)
Q Consensus 33 l~~~f~~A~~~~---~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rf- 108 (242)
+.++++.+.... ++-+|++.+.+.. . ...+..|+..++..++..++|...+..+.- ..+...|
T Consensus 56 ~~~i~~~~~t~plF~~~rlViv~~~~~~---------~---~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~-kkl~k~~~ 122 (328)
T PRK08487 56 FEQAKDFLSQSSLFGGKNLLIIKLDKKI---------P---KKELKLLIELCEKNSDNYFIIELYGADSKT-KDIEKLFQ 122 (328)
T ss_pred HHHHHHHHhcccccCCceEEEEeccccc---------C---HHHHHHHHHHHhcCCCCEEEEEecCCcchh-HHHHHHhc
Confidence 456666666532 3456666643211 1 112345555555444444444433322211 1222222
Q ss_pred ----ccEEEeCCCCHHHHHHHHHHHHhccccc
Q psy4165 109 ----DEMVEFPLPTLNERERLVRLYFDKFVLQ 136 (242)
Q Consensus 109 ----d~~i~~~~P~~~~R~~Il~~~l~~~~~~ 136 (242)
...+++..|+..+....++..+++.+..
T Consensus 123 ~~k~~~~v~~~~~~~~~l~~~i~~~~~~~g~~ 154 (328)
T PRK08487 123 KKDEAVFVRFFKPNAREALELLQERAKELGLD 154 (328)
T ss_pred cCCCceEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence 3468888999999999999999875443
No 297
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=75.36 E-value=34 Score=28.41 Aligned_cols=65 Identities=11% Similarity=0.207 Sum_probs=38.9
Q ss_pred HHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeC
Q psy4165 36 VFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFP 115 (242)
Q Consensus 36 ~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~ 115 (242)
.+..|-.+. |.||+-||= . ++-.......+-.+|..+....+. .+|..|.. +.+..++|+.|++.
T Consensus 152 AIARAL~~~-P~iilADEP-----T---gnLD~~t~~~V~~ll~~~~~~~g~-tii~VTHd-----~~lA~~~dr~i~l~ 216 (226)
T COG1136 152 AIARALINN-PKIILADEP-----T---GNLDSKTAKEVLELLRELNKERGK-TIIMVTHD-----PELAKYADRVIELK 216 (226)
T ss_pred HHHHHHhcC-CCeEEeeCc-----c---ccCChHHHHHHHHHHHHHHHhcCC-EEEEEcCC-----HHHHHhCCEEEEEe
Confidence 345555566 999999992 1 122334455566677666444444 45555654 35567888888775
No 298
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=75.21 E-value=35 Score=34.03 Aligned_cols=66 Identities=8% Similarity=0.038 Sum_probs=46.8
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc------HHHhcccccEEEeCCCC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD------WAVNDRLDEMVEFPLPT 118 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld------~al~~Rfd~~i~~~~P~ 118 (242)
+|.+|+|||+..++. .......+..++..+.+.++ .+|.+|..+.++. .+++...+..|.++.+.
T Consensus 665 rr~iiviDEaW~lL~-------~p~~a~fi~~~~kt~RK~ng--~~i~iTQs~~Dll~s~i~a~aIi~ns~tkIlL~q~~ 735 (829)
T TIGR03783 665 VRKMILIEEAWKAIA-------SANMAEYIKYLYKTVRKYFG--EAIVVTQEVDDIISSPIVKESIINNSDCKILLDQRK 735 (829)
T ss_pred CcEEEEEeCHHHHhC-------CHHHHHHHHHHHHHHhhcCC--EEEEEcCCHHHHhcChHHHHHHHHhCCEEEEeCCcc
Confidence 389999999999985 23344556666666655544 7777887777665 35667788899988776
Q ss_pred H
Q psy4165 119 L 119 (242)
Q Consensus 119 ~ 119 (242)
.
T Consensus 736 ~ 736 (829)
T TIGR03783 736 Y 736 (829)
T ss_pred h
Confidence 4
No 299
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=73.96 E-value=35 Score=33.62 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=47.9
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccH-----HHhcccccEEEeCCCCH
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDW-----AVNDRLDEMVEFPLPTL 119 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~-----al~~Rfd~~i~~~~P~~ 119 (242)
.|.+++|||+..++... .......+..+.....+++ +.++.+|..+.++.. +++.-.+..|.++.+.
T Consensus 637 ~~~~~viDEaw~ll~~~-----~~~~~~~i~~~~r~~RK~g--~~~~~~TQ~~~D~~~~~~~~~il~n~~~~i~L~~~~- 708 (797)
T TIGR02746 637 RRKICIIDEAWSLLDGA-----NPQAADFIETGYRRARKYG--GAFITITQGIEDFYSSPEARAAYANSDWKIILRQSA- 708 (797)
T ss_pred CceEEEEecHHHHhhcc-----cHHHHHHHHHHHHHHhhcC--ceEEEEEecHHHhccCHHHHHHHhcccceeeecCCH-
Confidence 48999999999998611 1234455555655555444 477788888888853 4556677788887663
Q ss_pred HHHHHHH
Q psy4165 120 NERERLV 126 (242)
Q Consensus 120 ~~R~~Il 126 (242)
++..++.
T Consensus 709 ~~~~~~~ 715 (797)
T TIGR02746 709 ESIAKLK 715 (797)
T ss_pred HHHHHHH
Confidence 3444443
No 300
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=71.34 E-value=5.7 Score=32.23 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=37.0
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHh-c-----------cCCCCeEEEEecCCcccccHH-HhcccccEE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT-G-----------EQSDKFMLVLASNTPQQFDWA-VNDRLDEMV 112 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l-~-----------~~~~~v~vI~tTn~~~~ld~a-l~~Rfd~~i 112 (242)
--|+.+||++.+..+ ....+..|++.- + ......++|||||..+-|... =-+|| ..|
T Consensus 96 ~~iveldEl~~~~k~---------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v 165 (198)
T PF05272_consen 96 KWIVELDELDGLSKK---------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPV 165 (198)
T ss_pred hHheeHHHHhhcchh---------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEE
Confidence 368999999987521 123455565542 1 223347889999997744332 22788 366
Q ss_pred EeCC
Q psy4165 113 EFPL 116 (242)
Q Consensus 113 ~~~~ 116 (242)
+++.
T Consensus 166 ~v~~ 169 (198)
T PF05272_consen 166 EVSK 169 (198)
T ss_pred EEcC
Confidence 6665
No 301
>PRK09694 helicase Cas3; Provisional
Probab=71.16 E-value=7.8 Score=38.71 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=35.2
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhccc
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRL 108 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rf 108 (242)
.++|+|||++++ ...+...+..+|..+.....+ +|++|...|..+-..++..|
T Consensus 440 ~svvIiDEVHAy---------D~ym~~lL~~~L~~l~~~g~~-vIllSATLP~~~r~~L~~a~ 492 (878)
T PRK09694 440 RSVLIVDEVHAY---------DAYMYGLLEAVLKAQAQAGGS-VILLSATLPATLKQKLLDTY 492 (878)
T ss_pred cCeEEEechhhC---------CHHHHHHHHHHHHHHHhcCCc-EEEEeCCCCHHHHHHHHHHh
Confidence 589999999998 334666778888777555555 55555555555555554433
No 302
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=71.08 E-value=48 Score=29.88 Aligned_cols=149 Identities=17% Similarity=0.221 Sum_probs=77.3
Q ss_pred cCCcEEEEecCCcccccchH--------HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHh
Q psy4165 10 SGMDYAIMTGGDVAPMGSSG--------VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT 81 (242)
Q Consensus 10 ~~~~~~~v~~~~l~~~~g~~--------e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l 81 (242)
.+.||+.++|..+-....|+ ..--..+|+.|- ..-+|+|||-.+ +...+.-+..||+.=
T Consensus 254 ~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~An----gGTVlLDeIgEm---------Sp~lQaKLLRFL~DG 320 (511)
T COG3283 254 HSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQAN----GGTVLLDEIGEM---------SPRLQAKLLRFLNDG 320 (511)
T ss_pred cCCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhcc----CCeEEeehhhhc---------CHHHHHHHHHHhcCC
Confidence 44699999998874321111 122344566665 567899999776 334555555555431
Q ss_pred -----c---cCCCCeEEEEecCCcc-------cccHHHhcccccEEEeCCCCH----HHHHHHHHHHHhccccchhhhcc
Q psy4165 82 -----G---EQSDKFMLVLASNTPQ-------QFDWAVNDRLDEMVEFPLPTL----NERERLVRLYFDKFVLQPAAQGK 142 (242)
Q Consensus 82 -----~---~~~~~v~vI~tTn~~~-------~ld~al~~Rfd~~i~~~~P~~----~~R~~Il~~~l~~~~~~~~~~~~ 142 (242)
+ +..-.|-||+||..+- .+-..+.-|.. .+.+..|-. ++..-+.+.++.+++..
T Consensus 321 tFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~e------ 393 (511)
T COG3283 321 TFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDE------ 393 (511)
T ss_pred ceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhh-eeeecCCccccCcccchHHHHHHHHHHHHH------
Confidence 1 1122488999996531 11112222443 444444433 33445666666654222
Q ss_pred cccccCCCChhHhHHHHHHhCCCC--CHHHHHHHHHHHHHH
Q psy4165 143 RRLKVAPFDYTSLCSKIAHVTEGL--SGREIAKLGVAWQAS 181 (242)
Q Consensus 143 ~~~~~~~~d~~~~l~~la~~t~g~--s~adi~~lv~~a~~~ 181 (242)
.+++...++- ..+..+.+. +| +.++++|.+-+|...
T Consensus 394 lg~p~pkl~~-~~~~~L~~y--~WpGNVRqL~N~iyRA~s~ 431 (511)
T COG3283 394 LGVPRPKLAA-DLLTVLTRY--AWPGNVRQLKNAIYRALTL 431 (511)
T ss_pred hCCCCCccCH-HHHHHHHHc--CCCccHHHHHHHHHHHHHH
Confidence 3455555552 222333333 33 567788877644433
No 303
>PRK10263 DNA translocase FtsK; Provisional
Probab=70.84 E-value=12 Score=38.77 Aligned_cols=73 Identities=14% Similarity=0.312 Sum_probs=53.1
Q ss_pred EEEEEecccccccccCCCccchHHHHHHHHHHHHhc--cCCCCeEEEEecCCcc--cccHHHhcccccEEEeCCCCHHHH
Q psy4165 47 LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQ--QFDWAVNDRLDEMVEFPLPTLNER 122 (242)
Q Consensus 47 ~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~--~~~~~v~vI~tTn~~~--~ld~al~~Rfd~~i~~~~P~~~~R 122 (242)
.||+|||+..|+... .. -+..++..|- ...-+|.+|.+|.+|+ .|...++.-|...|.|..-+..+-
T Consensus 1142 IVVIIDE~AdLm~~~-----~k----evE~lI~rLAqkGRAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~DS 1212 (1355)
T PRK10263 1142 IVVLVDEFADLMMTV-----GK----KVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDS 1212 (1355)
T ss_pred EEEEEcChHHHHhhh-----hH----HHHHHHHHHHHHhhhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHHHH
Confidence 589999998876421 11 1334444442 4456799999999987 577777778889999999998888
Q ss_pred HHHHHH
Q psy4165 123 ERLVRL 128 (242)
Q Consensus 123 ~~Il~~ 128 (242)
+.||..
T Consensus 1213 rtILd~ 1218 (1355)
T PRK10263 1213 RTILDQ 1218 (1355)
T ss_pred HHhcCC
Confidence 888755
No 304
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=68.02 E-value=20 Score=27.68 Aligned_cols=56 Identities=13% Similarity=0.158 Sum_probs=31.3
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFP 115 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~ 115 (242)
+|.++++||...=.. ......+...+.++-.. +..+|.+|..++... +.|+.+.+.
T Consensus 99 ~~~llllDEp~~gld--------~~~~~~l~~~l~~~~~~--~~~vii~TH~~~~~~-----~~d~~~~l~ 154 (162)
T cd03227 99 PRPLYILDEIDRGLD--------PRDGQALAEAILEHLVK--GAQVIVITHLPELAE-----LADKLIHIK 154 (162)
T ss_pred CCCEEEEeCCCCCCC--------HHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHH-----hhhhEEEEE
Confidence 389999999876532 22223333333333222 347778888776543 245555554
No 305
>KOG2255|consensus
Probab=68.00 E-value=48 Score=26.97 Aligned_cols=126 Identities=11% Similarity=0.117 Sum_probs=73.4
Q ss_pred CcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccc-cCCCccchHHHHHHHHHHHHhccC-CCCeE
Q psy4165 12 MDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK-RSSETISESLRATLNAFLYRTGEQ-SDKFM 89 (242)
Q Consensus 12 ~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~-r~~~~~~~~~~~~l~~lL~~l~~~-~~~v~ 89 (242)
+++..+++..+++..|++...+...|..-.+ -.+++=||++.=+++ +-....+..-..-+...+..++.. +..-+
T Consensus 92 ~~~~llrp~qymN~SgesV~kva~~y~i~~~---~ivvIhDEl~l~~Gkl~Lrp~gs~rgHNGvrs~~~~l~g~~~fpRL 168 (224)
T KOG2255|consen 92 VPILLLRPQQYMNFSGESVGKVAALYKIPLR---HIVVIHDELELPLGKLRLRPGGSHRGHNGVRSVFNCLNGRRSFPRL 168 (224)
T ss_pred eeeEeeCcHhhhccccchhhhhHHhhcchhe---eEEEEeccccCcCceEEeccCCCccccccHHHHHhhccCCccccee
Confidence 4566666766666668888888887776653 368889999976653 111111111111244455555422 33456
Q ss_pred EEEecCCc--ccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCC
Q psy4165 90 LVLASNTP--QQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLS 167 (242)
Q Consensus 90 vI~tTn~~--~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s 167 (242)
-|+..+.| .++++.++++|. ..++.+.|+..+... ....++.+-...++|+
T Consensus 169 ~iGIGrppg~~d~~a~vLskfs---------p~e~ke~Let~l~~~------------------~~lil~~l~~~is~~~ 221 (224)
T KOG2255|consen 169 SIGIGRPPGNEDVKAFVLSKFS---------PAEQKELLETLLEHV------------------KTLILQGLQQSISRFN 221 (224)
T ss_pred eeecCCCCCchhhhHHHHHhcC---------hhhhHHHHHHHHhhh------------------HHHHHHHHHHhcccCc
Confidence 67766544 567778889885 234446677666431 0334566777766665
No 306
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=67.82 E-value=10 Score=29.16 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=35.4
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCC
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPT 118 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~ 118 (242)
..+|++||+|.+... .....+..++..+ .....+++.+++.+...+......+...+.+....
T Consensus 130 ~~~iIiDE~h~~~~~--------~~~~~~~~~~~~~--~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 130 VDLVILDEAHRLLDG--------GFGDQLEKLLKLL--PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred CCEEEEECHHHHhcC--------CcHHHHHHHHHhC--CccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 358999999999642 1122334444333 23334555555555666666655555566665443
No 307
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=67.81 E-value=45 Score=36.61 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=74.6
Q ss_pred hHHHHHHhcCCcEEEEecCC---cc----ccc-ch--HHHHHH-HHHHHHHhCCCcEEEEEecccccccccCCCccchHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGD---VA----PMG-SS--GVTAIH-KVFDWASSSRKGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~---l~----~~~-g~--~e~~l~-~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
|..|+|++.|-.++.++.++ +. +.. ++ ++-.++ .-|-.|.+. +..|++||+..- +..+
T Consensus 1559 lItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~--G~WVlLDEiNLa---------SQSV 1627 (4600)
T COG5271 1559 LITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD--GGWVLLDEINLA---------SQSV 1627 (4600)
T ss_pred HHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc--CCEEEeehhhhh---------HHHH
Confidence 67899999999999988653 22 222 23 332322 335556544 689999999654 2223
Q ss_pred HHHHHHHHHH--------hc---cCCCCeEEEEecCCcc------cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 71 RATLNAFLYR--------TG---EQSDKFMLVLASNTPQ------QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 71 ~~~l~~lL~~--------l~---~~~~~v~vI~tTn~~~------~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
-.-++..|.+ +| ....+..|+||-|.-+ .||.+++.||. .|.+...+..+...|.......
T Consensus 1628 lEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFs-vV~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1628 LEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFS-VVKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred HHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhh-eEEecccccchHHHHHHhhCCc
Confidence 3445555543 22 1122345556555433 69999999997 7888888777777777776653
No 308
>PHA00520 packaging NTPase P4
Probab=67.80 E-value=36 Score=29.51 Aligned_cols=80 Identities=15% Similarity=0.083 Sum_probs=49.0
Q ss_pred EEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhc--cCCCCeEEEE
Q psy4165 15 AIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG--EQSDKFMLVL 92 (242)
Q Consensus 15 ~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~--~~~~~v~vI~ 92 (242)
-.++..+-.+-|+.-...+....-.|. .. -+||++|-+-.+...-...-.++...+.+-.||+.++ --..+++||+
T Consensus 155 ~vIR~GEp~~~Y~td~~~~~~~~l~am-l~-v~VvvvDSlr~vl~~~~GnatsGGISr~~~~~LTdl~~iaas~gc~vV~ 232 (330)
T PHA00520 155 AVIRWGEPLEGYDTDLHVFAALILAAM-LD-VDVVVVDSLRNVLFELGGNATSGGISRGAYGLLTDLGNIAASRGCRVVA 232 (330)
T ss_pred eEEEecCcccccCchhHHHHHHHHHHH-hh-ceEEEEechHHHHhhhccCCCCCcchHHHHHHHHHHHHHHHHcCcEEEE
Confidence 344555555545333332222222222 33 6999999998887766555556667778888888886 2344568888
Q ss_pred ecCC
Q psy4165 93 ASNT 96 (242)
Q Consensus 93 tTn~ 96 (242)
+-|.
T Consensus 233 ~lNP 236 (330)
T PHA00520 233 TLNP 236 (330)
T ss_pred EcCC
Confidence 8775
No 309
>KOG0477|consensus
Probab=67.69 E-value=24 Score=33.88 Aligned_cols=38 Identities=18% Similarity=0.060 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 166 LSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 166 ~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
.|.+.|+.+++.++|.+...-...++.+|+..|+.-.+
T Consensus 721 iTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~l 758 (854)
T KOG0477|consen 721 ITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVML 758 (854)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHH
Confidence 47788999998777777777777888888888876554
No 310
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=67.61 E-value=1.6 Score=34.70 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=29.3
Q ss_pred hHHHHHHh---cCCcEEEEecCCccccc--chHHHHHHHHHHHHHhCCCcEEEEEecccc
Q psy4165 2 FAKKLAHH---SGMDYAIMTGGDVAPMG--SSGVTAIHKVFDWASSSRKGLVLFIDEADA 56 (242)
Q Consensus 2 lA~aiA~e---~~~~~~~v~~~~l~~~~--g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~ 56 (242)
||.||+++ .|.++++++.+++.... ........+.+..... +-+|+|||+-.
T Consensus 63 La~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~---~dlLilDDlG~ 119 (178)
T PF01695_consen 63 LAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR---VDLLILDDLGY 119 (178)
T ss_dssp HHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT---SSCEEEETCTS
T ss_pred HHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc---ccEecccccce
Confidence 45566554 67888999988887532 1111123334444442 57899999843
No 311
>KOG3928|consensus
Probab=67.39 E-value=77 Score=28.94 Aligned_cols=116 Identities=12% Similarity=0.107 Sum_probs=64.2
Q ss_pred cEEEEEeccccccc----ccCCCc-cchHHHHHHHHHHHHhc-cCCCCeEEEEecC---Cccc--------------ccH
Q psy4165 46 GLVLFIDEADAFLR----KRSSET-ISESLRATLNAFLYRTG-EQSDKFMLVLASN---TPQQ--------------FDW 102 (242)
Q Consensus 46 p~Il~iDeiD~l~~----~r~~~~-~~~~~~~~l~~lL~~l~-~~~~~v~vI~tTn---~~~~--------------ld~ 102 (242)
|..+.||++-+++. .+.... -.......+..+...+. ...++ .+|+++. -+.. +++
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~g-~vi~a~s~~~~~~a~~h~gv~~y~pr~llg~ 394 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTFG-SVIMAISGVTTPSAFGHLGVAPYVPRKLLGE 394 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccccc-eEEEEecccccchhccccccccCCchHhcCc
Confidence 89999999999998 333322 12223445555555553 34444 4444444 1111 111
Q ss_pred HHh---cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHH
Q psy4165 103 AVN---DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLG 175 (242)
Q Consensus 103 al~---~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv 175 (242)
... .-|. .|+++..+.+|-..++.+|+..- ..+.++.-+...+++--.. +.+|+-++.+|
T Consensus 395 egfe~lqpf~-pi~v~nYt~~E~~~~i~YYl~~n-----------wl~kkv~~Ee~~kql~fLS-ngNP~l~~~lc 457 (461)
T KOG3928|consen 395 EGFEALQPFV-PIEVENYTLDEFEALIDYYLQSN-----------WLLKKVPGEENIKQLYFLS-NGNPSLMERLC 457 (461)
T ss_pred cchhhccCcC-ccccCCCCHHHHHHHHHHHHHhh-----------HHHhhcCcccchhhhhhhc-CCCHHHHHHHH
Confidence 111 1243 47888999999999999999751 1122222111113343333 67888887776
No 312
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=66.93 E-value=37 Score=27.67 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccC-CCCeEEEEecCCcccccHHH
Q psy4165 30 VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQ-SDKFMLVLASNTPQQFDWAV 104 (242)
Q Consensus 30 e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~-~~~v~vI~tTn~~~~ld~al 104 (242)
...++.+-.......+|++++|||+-.-.. .......+..++..+-.. ..+..+|.+|...+.+....
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd-------~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTD-------TEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCC-------HHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 344555444333333489999999754321 112233444555555322 23457888888877766554
No 313
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=65.83 E-value=47 Score=28.03 Aligned_cols=56 Identities=29% Similarity=0.305 Sum_probs=28.8
Q ss_pred HHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHh-ccCCCCeEEEEecCCcccccHHHh
Q psy4165 36 VFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT-GEQSDKFMLVLASNTPQQFDWAVN 105 (242)
Q Consensus 36 ~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l-~~~~~~v~vI~tTn~~~~ld~al~ 105 (242)
.+..|-... |-||++||==.-+ ..-++..+.+.|..+ .... . .|+.-| +++++|+.
T Consensus 140 aiARAL~~~-P~lLLlDEPFgAL--------DalTR~~lq~~l~~lw~~~~-~-TvllVT---Hdi~EAv~ 196 (248)
T COG1116 140 AIARALATR-PKLLLLDEPFGAL--------DALTREELQDELLRLWEETR-K-TVLLVT---HDVDEAVY 196 (248)
T ss_pred HHHHHHhcC-CCEEEEcCCcchh--------hHHHHHHHHHHHHHHHHhhC-C-EEEEEe---CCHHHHHh
Confidence 344444455 9999999921110 222444555555444 3333 2 333334 45777877
No 314
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=65.80 E-value=63 Score=25.49 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcc
Q psy4165 30 VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQ 98 (242)
Q Consensus 30 e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~ 98 (242)
...++++-..+....+|.++++||.-.-.. ..........++..+.... +..+|.+|...+
T Consensus 63 s~~~~~l~~~l~~~~~~~llllDEp~~g~d-------~~~~~~~~~~~l~~l~~~~-~~~iii~TH~~~ 123 (185)
T smart00534 63 MVEMKETANILKNATENSLVLLDELGRGTS-------TYDGVAIAAAVLEYLLEKI-GALTLFATHYHE 123 (185)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCCCCC-------HHHHHHHHHHHHHHHHhcC-CCeEEEEecHHH
Confidence 344444433333323499999999754321 1223334455665553322 346777787764
No 315
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=65.72 E-value=34 Score=29.01 Aligned_cols=65 Identities=9% Similarity=0.110 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 35 KVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 35 ~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
-++..|-... |-++++||== .+........+-++|.++... +..|++.|..+..+- .-||+.+.+
T Consensus 148 V~lARAL~~~-p~lllLDEP~--------~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~----~~~D~vi~L 212 (254)
T COG1121 148 VLLARALAQN-PDLLLLDEPF--------TGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVM----AYFDRVICL 212 (254)
T ss_pred HHHHHHhccC-CCEEEecCCc--------ccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhH----hhCCEEEEE
Confidence 3455666566 9999999931 112344566777888888644 446666776655332 445555544
No 316
>KOG2383|consensus
Probab=65.64 E-value=11 Score=34.19 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=23.9
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCc
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTP 97 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~ 97 (242)
-++|+|||+..-- -..--+++.|...+ .+++|++++|+||.
T Consensus 194 a~lLCFDEfQVTD---------VADAmiL~rLf~~L--f~~GvVlvATSNR~ 234 (467)
T KOG2383|consen 194 AILLCFDEFQVTD---------VADAMILKRLFEHL--FKNGVVLVATSNRA 234 (467)
T ss_pred ceeeeechhhhhh---------HHHHHHHHHHHHHH--HhCCeEEEEeCCCC
Confidence 3899999985431 11111233333333 25589999999874
No 317
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=65.52 E-value=62 Score=28.38 Aligned_cols=73 Identities=14% Similarity=0.207 Sum_probs=41.0
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCC--C-eEEEEecCCcc----cccHHHhcccccEEEeCCC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSD--K-FMLVLASNTPQ----QFDWAVNDRLDEMVEFPLP 117 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~--~-v~vI~tTn~~~----~ld~al~~Rfd~~i~~~~P 117 (242)
+|-||+|+|+|++- ..+++.|+.-+..+.. + ++|+|.+..++ .|+.+..++.... .|..+
T Consensus 199 ~~lVIi~eD~EsF~------------~~VL~dlI~ils~~~~~lP~vli~GiaTs~~~~~~~Lp~~~~~~L~~~-~F~~~ 265 (330)
T PF07034_consen 199 PPLVIIFEDFESFD------------SQVLQDLILILSSYLDRLPFVLIFGIATSVEAFHSRLPRSTLSLLRIK-KFQLQ 265 (330)
T ss_pred CCEEEEEcccccCC------------HHHHHHHHHHHHhccCCcCEEEEEecCCChHHHHhhCCHHHHhhcCce-EEEeC
Confidence 48999999999993 3466666665532222 3 44455333333 3555555666543 34444
Q ss_pred -CHHHHHHHHHHHH
Q psy4165 118 -TLNERERLVRLYF 130 (242)
Q Consensus 118 -~~~~R~~Il~~~l 130 (242)
....-.+|++..+
T Consensus 266 ~~~~~l~~v~~~~l 279 (330)
T PF07034_consen 266 SSSEILERVLEKVL 279 (330)
T ss_pred ChHHHHHHHHHHHh
Confidence 4444455555554
No 318
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=65.35 E-value=32 Score=27.54 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCcEEEEEeccccccc
Q psy4165 33 IHKVFDWASSSRKGLVLFIDEADAFLR 59 (242)
Q Consensus 33 l~~~f~~A~~~~~p~Il~iDeiD~l~~ 59 (242)
+..+...+.... |.+|+||-+..+..
T Consensus 86 ~~~l~~~~~~~~-~~lvVIDSis~l~~ 111 (209)
T TIGR02237 86 IQKTSKFIDRDS-ASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHhhcC-ccEEEEeCcHHHhH
Confidence 444445555555 89999999999875
No 319
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=65.32 E-value=17 Score=28.61 Aligned_cols=31 Identities=6% Similarity=-0.051 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecccccccc
Q psy4165 30 VTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60 (242)
Q Consensus 30 e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~ 60 (242)
...+.++.+.++...+|.+|+||.+..+...
T Consensus 126 ~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 126 DEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp HHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred hHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 3456777777777333999999999999876
No 320
>KOG0480|consensus
Probab=64.68 E-value=56 Score=31.55 Aligned_cols=75 Identities=16% Similarity=0.054 Sum_probs=48.8
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhc-------------cCCCCeEEEEecCCcc-------------c
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG-------------EQSDKFMLVLASNTPQ-------------Q 99 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~-------------~~~~~v~vI~tTn~~~-------------~ 99 (242)
..|-.|||+|.+--+ .. ..++..|+ .-+.+--+|||+|... .
T Consensus 443 nGICCIDEFDKMd~~--------dq----vAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~ 510 (764)
T KOG0480|consen 443 NGICCIDEFDKMDVK--------DQ----VAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENIN 510 (764)
T ss_pred CceEEechhcccChH--------hH----HHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcC
Confidence 578899999998421 11 12222231 1233445778887654 5
Q ss_pred ccHHHhcccccEE-EeCCCCHHHHHHHHHHHHhc
Q psy4165 100 FDWAVNDRLDEMV-EFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 100 ld~al~~Rfd~~i-~~~~P~~~~R~~Il~~~l~~ 132 (242)
+.+++++|||..+ -+.-|++..=..|-++.+..
T Consensus 511 msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 511 MSAPIMSRFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred CCchhhhhhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 7888889999654 45678888888888887764
No 321
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=64.65 E-value=47 Score=33.11 Aligned_cols=79 Identities=14% Similarity=0.192 Sum_probs=49.1
Q ss_pred HHHHHHHHHHh--CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc-----HHH
Q psy4165 32 AIHKVFDWASS--SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD-----WAV 104 (242)
Q Consensus 32 ~l~~~f~~A~~--~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld-----~al 104 (242)
.+..+|..... ..+|.++++||.-..+. .......+..++..+.+. +..+|.+|..+..+. .++
T Consensus 637 vl~yl~~ri~~~l~~~p~illlDE~~~~L~-------d~~~~~~i~~~lk~~RK~--~~~vil~Tq~~~d~~~s~~a~~i 707 (818)
T PRK13830 637 VLTYLFRRIEKRLTGAPSLIILDEAWLMLG-------HPVFRDKIREWLKVLRKA--NCAVVLATQSISDAERSGIIDVL 707 (818)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEECchhhcC-------CHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHhcCchHHHH
Confidence 34444544432 23499999999888863 123455566666666443 346777787777664 344
Q ss_pred hcccccEEEeCCCCH
Q psy4165 105 NDRLDEMVEFPLPTL 119 (242)
Q Consensus 105 ~~Rfd~~i~~~~P~~ 119 (242)
..-.+..|.++.|..
T Consensus 708 ~~~~~t~i~L~n~~a 722 (818)
T PRK13830 708 KESCPTKICLPNGAA 722 (818)
T ss_pred HhcCCeEEECCCccc
Confidence 456787888876653
No 322
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=64.36 E-value=16 Score=30.87 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=43.3
Q ss_pred hHHHHHHh---cCCcEEEEecCCcccccchH--HHHHHHHHHH-HHhCCCcEEEEEecccccccccCCCccchHHHHHHH
Q psy4165 2 FAKKLAHH---SGMDYAIMTGGDVAPMGSSG--VTAIHKVFDW-ASSSRKGLVLFIDEADAFLRKRSSETISESLRATLN 75 (242)
Q Consensus 2 lA~aiA~e---~~~~~~~v~~~~l~~~~g~~--e~~l~~~f~~-A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~ 75 (242)
||-||+++ .|..++.++.+++++..-.+ ......-+.. .+ ..-+|+|||+=..-. +......+.
T Consensus 121 La~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~---~~dlLIiDDlG~~~~-------~~~~~~~~~ 190 (254)
T COG1484 121 LAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK---KVDLLIIDDIGYEPF-------SQEEADLLF 190 (254)
T ss_pred HHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh---cCCEEEEecccCccC-------CHHHHHHHH
Confidence 45556555 57889999998887633111 1111111112 22 257999999755411 222333344
Q ss_pred HHHHHhccCCCCeEEEEecCCcc
Q psy4165 76 AFLYRTGEQSDKFMLVLASNTPQ 98 (242)
Q Consensus 76 ~lL~~l~~~~~~v~vI~tTn~~~ 98 (242)
+++...-.... . |.|||.+.
T Consensus 191 q~I~~r~~~~~--~-~~tsN~~~ 210 (254)
T COG1484 191 QLISRRYESRS--L-IITSNLSF 210 (254)
T ss_pred HHHHHHHhhcc--c-eeecCCCh
Confidence 44333222222 3 88998764
No 323
>COG1485 Predicted ATPase [General function prediction only]
Probab=64.14 E-value=12 Score=33.19 Aligned_cols=39 Identities=28% Similarity=0.149 Sum_probs=24.5
Q ss_pred EEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCC
Q psy4165 47 LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNT 96 (242)
Q Consensus 47 ~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~ 96 (242)
-||+|||+..-- -..--+++.|+..|- ..+|++++|+|.
T Consensus 132 ~vLCfDEF~VtD---------I~DAMiL~rL~~~Lf--~~GV~lvaTSN~ 170 (367)
T COG1485 132 RVLCFDEFEVTD---------IADAMILGRLLEALF--ARGVVLVATSNT 170 (367)
T ss_pred CEEEeeeeeecC---------hHHHHHHHHHHHHHH--HCCcEEEEeCCC
Confidence 699999986521 111224455555552 457899999985
No 324
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=64.10 E-value=30 Score=31.30 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=49.2
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc--------HHHhcccccEEEeCC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD--------WAVNDRLDEMVEFPL 116 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld--------~al~~Rfd~~i~~~~ 116 (242)
.|.++++||+..+..- ..+..++.... +.++.+++.+..+..|. .++++-+...+.++.
T Consensus 270 ~~~~~~lDE~~~l~~~-----------~~l~~~l~~~R--~~G~~~~~~~Qs~~Ql~~~yg~~~a~~i~~n~~~~i~~~~ 336 (410)
T cd01127 270 RRLWFFIDELPSLHKL-----------PDLVDALAEGR--KFGGCFVLGIQSYAQLEDIYGKKGAQTLASNLRTRIVLAA 336 (410)
T ss_pred CcEEEEEECccccccc-----------hHHHHHHHHHh--cCCCEEEEEEcCHHHHHHHHCHHHHHHHHhhcCcEEEEeC
Confidence 4789999999998531 12344444443 44567777777776664 245578888999998
Q ss_pred CCHHHHHHHHHHHHhc
Q psy4165 117 PTLNERERLVRLYFDK 132 (242)
Q Consensus 117 P~~~~R~~Il~~~l~~ 132 (242)
.+.+....+- ..+.+
T Consensus 337 ~d~~ta~~~s-~~lG~ 351 (410)
T cd01127 337 PDAKTAEHAS-DSLGE 351 (410)
T ss_pred CCHHHHHHHH-HhcCC
Confidence 8877766654 44443
No 325
>KOG2170|consensus
Probab=64.04 E-value=1e+02 Score=27.06 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=23.8
Q ss_pred HHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 36 VFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 36 ~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
+-..++.+. -+|++|||+|.+ +...-..+.-||..
T Consensus 170 v~~~v~~C~-rslFIFDE~DKm---------p~gLld~lkpfLdy 204 (344)
T KOG2170|consen 170 VRGTVQACQ-RSLFIFDEVDKL---------PPGLLDVLKPFLDY 204 (344)
T ss_pred HHHHHHhcC-CceEEechhhhc---------CHhHHHHHhhhhcc
Confidence 333445565 699999999998 44455566667653
No 326
>PRK13695 putative NTPase; Provisional
Probab=64.00 E-value=33 Score=26.64 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=39.0
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCc--ccccHHHhcccccEEEeCCCCHHHH
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTP--QQFDWAVNDRLDEMVEFPLPTLNER 122 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~--~~ld~al~~Rfd~~i~~~~P~~~~R 122 (242)
+|-+|++||+..+- .......+.+..+ + .. +..+|+++|.. ..+-+.+..|.|..|.- -+.+.|
T Consensus 96 ~~~~lllDE~~~~e------~~~~~~~~~l~~~---~-~~--~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~--~~~~~r 161 (174)
T PRK13695 96 EADVIIIDEIGKME------LKSPKFVKAVEEV---L-DS--EKPVIATLHRRSVHPFVQEIKSRPGGRVYE--LTPENR 161 (174)
T ss_pred CCCEEEEECCCcch------hhhHHHHHHHHHH---H-hC--CCeEEEEECchhhHHHHHHHhccCCcEEEE--Ecchhh
Confidence 38899999974321 0011122233333 2 22 23666667653 23444566666654432 266777
Q ss_pred HHHHHHHHhc
Q psy4165 123 ERLVRLYFDK 132 (242)
Q Consensus 123 ~~Il~~~l~~ 132 (242)
.++....+..
T Consensus 162 ~~~~~~~~~~ 171 (174)
T PRK13695 162 DSLPFEILNR 171 (174)
T ss_pred hhHHHHHHHH
Confidence 7777776653
No 327
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=63.97 E-value=29 Score=28.03 Aligned_cols=57 Identities=23% Similarity=0.416 Sum_probs=30.3
Q ss_pred CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeC
Q psy4165 43 SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFP 115 (242)
Q Consensus 43 ~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~ 115 (242)
..+..+++|||+|.-+ .......+..+|.++... .. ++ .+|..+ .+....|..+.+.
T Consensus 156 ~~~~p~~ilDEvd~~L--------D~~~~~~l~~~l~~~~~~-~Q-~i-i~Th~~-----~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 156 YKPSPFLILDEVDAAL--------DEQNRKRLADLLKELSKQ-SQ-FI-ITTHNP-----EMFEDADKLIGVT 212 (220)
T ss_dssp CS--SEEEEESTTTTS---------HHHHHHHHHHHHHHTTT-SE-EE-EE-S-H-----HHHTT-SEEEEEE
T ss_pred cccccccccccccccc--------cccccccccccccccccc-cc-cc-cccccc-----ccccccccccccc
Confidence 3335789999999876 344556677777766422 33 33 334333 3444446555553
No 328
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=63.39 E-value=64 Score=26.60 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 31 TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 31 ~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+.+..+++.+. +|++++|||+-+=. + ..+.......++..+.+. .+..+|.+|...+-.
T Consensus 99 ~~~~~il~~~~---~~sLvllDE~~~gT----~---~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~ 157 (222)
T cd03287 99 SETSHILSNCT---SRSLVILDELGRGT----S---THDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLG 157 (222)
T ss_pred HHHHHHHHhCC---CCeEEEEccCCCCC----C---hhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHH
Confidence 34555554443 48999999974421 1 111122223444444333 345777788887654
No 329
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=63.27 E-value=27 Score=27.20 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcc
Q psy4165 33 IHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQ 98 (242)
Q Consensus 33 l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~ 98 (242)
+..+...+.... |.+|+||++-.+... + .......+..++..+... ++.+|.++....
T Consensus 84 ~~~i~~~~~~~~-~~~lviD~~~~~~~~----~-~~~~~~~i~~l~~~l~~~--g~tvi~v~~~~~ 141 (187)
T cd01124 84 IQRLKDAIEEFK-AKRVVIDSVSGLLLM----E-QSTARLEIRRLLFALKRF--GVTTLLTSEQSG 141 (187)
T ss_pred HHHHHHHHHHhC-CCEEEEeCcHHHhhc----C-hHHHHHHHHHHHHHHHHC--CCEEEEEecccc
Confidence 344455555555 999999999988643 1 122344455566666433 445566565443
No 330
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.23 E-value=13 Score=33.12 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=32.9
Q ss_pred hHHHHHHhcCCcEEEEecCCccc--ccc-hHHHHHHHHHHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAP--MGS-SGVTAIHKVFDWA 40 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~--~~g-~~e~~l~~~f~~A 40 (242)
+||-+|+-.|+||+.|.++.+.. |+| +.+..++.+.+.|
T Consensus 66 IARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve~a 107 (444)
T COG1220 66 IARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIA 107 (444)
T ss_pred HHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHHHH
Confidence 58999999999999999999975 556 7788888887754
No 331
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=62.69 E-value=10 Score=37.88 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=55.4
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHh--ccCCCCeEEEEecCCccc-ccHHHhcccccEEEeCCCCHHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT--GEQSDKFMLVLASNTPQQ-FDWAVNDRLDEMVEFPLPTLNER 122 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l--~~~~~~v~vI~tTn~~~~-ld~al~~Rfd~~i~~~~P~~~~R 122 (242)
..+|+|||++.|...- .+. +...+..| .....+|-+|.||.||.. +-..++.-|...|.|..-+..+-
T Consensus 640 ~iviiiDe~adlm~~~--------~k~-ve~~i~rLa~~ara~GIHlilatqRps~dVit~ikanipsrIaf~v~s~~ds 710 (858)
T COG1674 640 YIVIIIDEYADLMMVA--------GKE-LEELIARLAQKGRAAGIHLILATQRPSVDVITGIKANIPTRIALRLSSKIDS 710 (858)
T ss_pred eEEEEEcchHHHhhhh--------hHH-HHHHHHHHHHhhhhcceEEEEecCCCCcchhHHHHhCCcceEEEEEcCccce
Confidence 5799999999996421 111 44444444 245668999999999998 77777788999999999999888
Q ss_pred HHHHH
Q psy4165 123 ERLVR 127 (242)
Q Consensus 123 ~~Il~ 127 (242)
+-|+.
T Consensus 711 r~il~ 715 (858)
T COG1674 711 RLILG 715 (858)
T ss_pred eeecc
Confidence 88887
No 332
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=62.56 E-value=57 Score=25.58 Aligned_cols=86 Identities=19% Similarity=0.276 Sum_probs=47.7
Q ss_pred hHHHHHHhcCCcEEEEecCCcccccchHHH--------------------HHHHHHHHHHhCCCcEEEEEeccccccccc
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMGSSGVT--------------------AIHKVFDWASSSRKGLVLFIDEADAFLRKR 61 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~g~~e~--------------------~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r 61 (242)
+|..++.+++.+++++....... .+..+ .+..++... ..++.+|+||-+-.+..+.
T Consensus 17 ~a~~l~~~~~~~~~~iat~~~~~--~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~--~~~~~~VlID~Lt~~~~n~ 92 (170)
T PRK05800 17 FAERLAAQSGLQVLYIATAQPFD--DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD--AAPGRCVLVDCLTTWVTNL 92 (170)
T ss_pred HHHHHHHHcCCCcEeCcCCCCCh--HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh--cCCCCEEEehhHHHHHHHH
Confidence 67888888888877766544321 11112 244433321 1226789999999887654
Q ss_pred CCCccchHHHHHHHHHHHHhccCCCCeEEE
Q psy4165 62 SSETISESLRATLNAFLYRTGEQSDKFMLV 91 (242)
Q Consensus 62 ~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI 91 (242)
-..+.....+..+..|+..+...+..+++|
T Consensus 93 l~~~~~~~~~~~l~~li~~L~~~~~tvVlV 122 (170)
T PRK05800 93 LFEEGEEAIAAEIDALLAALQQLPAKIILV 122 (170)
T ss_pred hcccchHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 321111234555667777776544444444
No 333
>KOG2543|consensus
Probab=62.49 E-value=84 Score=28.48 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=39.6
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHh-c-cCCCCeEEEEecCCcccccHHHhccc-ccEEEeCCCCHHH
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT-G-EQSDKFMLVLASNTPQQFDWAVNDRL-DEMVEFPLPTLNE 121 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l-~-~~~~~v~vI~tTn~~~~ld~al~~Rf-d~~i~~~~P~~~~ 121 (242)
+...|++|++|.+-. +...+-+.|-.+ . -....+.+|...-.....-..=.|-+ -..++||.|+.++
T Consensus 115 ~~~~liLDnad~lrD----------~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e 184 (438)
T KOG2543|consen 115 QKVFLILDNADALRD----------MDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEE 184 (438)
T ss_pred ceEEEEEcCHHhhhc----------cchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHH
Confidence 368899999999941 122222222222 1 11223333333221111111001333 2478999999999
Q ss_pred HHHHHHHHHh
Q psy4165 122 RERLVRLYFD 131 (242)
Q Consensus 122 R~~Il~~~l~ 131 (242)
-++|+..--.
T Consensus 185 ~~~Il~~~~p 194 (438)
T KOG2543|consen 185 TQVILSRDNP 194 (438)
T ss_pred HHHHHhcCCc
Confidence 9999877543
No 334
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=61.81 E-value=38 Score=33.67 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=48.6
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHH-----hcccccEEEeCCCCH
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAV-----NDRLDEMVEFPLPTL 119 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al-----~~Rfd~~i~~~~P~~ 119 (242)
+|.+++|||...+.. .......++.+|+.+...+ .+|+.+|-.+.+++..- .......|.+|.|..
T Consensus 634 r~~~i~iDE~w~~l~-------~~~f~~~i~~~lkt~RK~N--g~vvfatQs~~d~~~s~iA~~~ie~~~t~Iflpn~~~ 704 (796)
T COG3451 634 RPFLIFIDEFWKLLD-------NPKFADFIRDWLKTLRKLN--GVVVFATQSILDILKSRIADAIIEQCPTKIFLPNPKA 704 (796)
T ss_pred CCeEEEeehhHHhcC-------CHHHHHHHHHHHHHHHhhC--cEEEEecCCHHHHhcchhHHHHHHhCCeEEEccCccc
Confidence 499999999999975 3345556666776675444 48888887777666443 367778888888844
Q ss_pred HHH
Q psy4165 120 NER 122 (242)
Q Consensus 120 ~~R 122 (242)
...
T Consensus 705 ~~~ 707 (796)
T COG3451 705 IEA 707 (796)
T ss_pred cch
Confidence 443
No 335
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=61.65 E-value=27 Score=31.25 Aligned_cols=85 Identities=11% Similarity=0.093 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecccccccccCC--CccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc-cHHHh-c
Q psy4165 31 TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSS--ETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF-DWAVN-D 106 (242)
Q Consensus 31 ~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~--~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l-d~al~-~ 106 (242)
..+.++++.+.... |.+|+||++..+.....+ .+.....+..+..|.......+-.+++++-.+.-..+ -+..+ .
T Consensus 145 ~~le~I~~~i~~~~-~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh 223 (372)
T cd01121 145 TNLEDILASIEELK-PDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEH 223 (372)
T ss_pred CcHHHHHHHHHhcC-CcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchh
Confidence 34666777777666 999999999998754322 1112234444444444444343334444433221111 11112 3
Q ss_pred ccccEEEeCC
Q psy4165 107 RLDEMVEFPL 116 (242)
Q Consensus 107 Rfd~~i~~~~ 116 (242)
-.|..++|..
T Consensus 224 ~vD~Vi~le~ 233 (372)
T cd01121 224 MVDTVLYFEG 233 (372)
T ss_pred hceEEEEEEc
Confidence 4576777754
No 336
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=61.34 E-value=32 Score=32.68 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=48.2
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccH--------HHhcccccEEEeCC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDW--------AVNDRLDEMVEFPL 116 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~--------al~~Rfd~~i~~~~ 116 (242)
.|+.+++||+.++..- ..+...+.....++ +.+++.+..+..|.. ++++-+...|.++.
T Consensus 407 ~rv~~ilDEf~sl~kl-----------p~l~~~l~~~Rk~G--~~~vl~~Qs~~QL~~~YG~~~a~tIl~n~~t~i~~~~ 473 (566)
T TIGR02759 407 RRIWFIMDELPSLHKL-----------PDLDETIAEVRKFG--GCYVLGIQSFAQLEKIYGQNGAATLFDLLNTRFFFRS 473 (566)
T ss_pred ceEEEEEEcchhhccc-----------hhHHHHHHHHhhcC--CEEEEEeCCHHHHHHHHCHhHHHHHHhhcCCEEEEeC
Confidence 4899999999998531 12444555554443 355555666666643 45577888999999
Q ss_pred CCHHHHHHHHHHHHhc
Q psy4165 117 PTLNERERLVRLYFDK 132 (242)
Q Consensus 117 P~~~~R~~Il~~~l~~ 132 (242)
++.+..+.+ ...+.+
T Consensus 474 ~d~~tA~~i-S~~lG~ 488 (566)
T TIGR02759 474 PSAKMAKIV-SDDLGE 488 (566)
T ss_pred CCHHHHHHH-HHhCCc
Confidence 998876665 444443
No 337
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=61.29 E-value=86 Score=25.79 Aligned_cols=91 Identities=21% Similarity=0.183 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHh-ccCCCCeEEEEecCCccccc-------
Q psy4165 30 VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT-GEQSDKFMLVLASNTPQQFD------- 101 (242)
Q Consensus 30 e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l-~~~~~~v~vI~tTn~~~~ld------- 101 (242)
...+..+.+.+.... |.+|+||.+-.+.. ....+......++.. |..+ ...+-.|+++.-++....-+
T Consensus 97 ~~~~~~l~~~~~~~~-~~lvviDpl~~~~~--~~~~d~~~~~~~~~~-L~~~a~~~g~avl~v~H~~K~~~~~~~~~~~~ 172 (239)
T cd01125 97 VPEFERIIEQLLIRR-IDLVVIDPLVSFHG--VSENDNGAMDAVIKA-LRRIAAQTGAAILLVHHVRKGSAKDGDTQEAA 172 (239)
T ss_pred cHHHHHHHHHHHhcC-CCEEEECChHHhCC--CCcCCHHHHHHHHHH-HHHHHHHhCCEEEEEeccCcccccCccccccc
Confidence 445666777676555 99999998877722 122212223333333 3333 33343455555555443322
Q ss_pred ---HHHhcccccEEEeCCCCHHHHHH
Q psy4165 102 ---WAVNDRLDEMVEFPLPTLNERER 124 (242)
Q Consensus 102 ---~al~~Rfd~~i~~~~P~~~~R~~ 124 (242)
.++.+-.+..+.+...+.++..+
T Consensus 173 rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 173 RGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred CcHHHHhcccceEEEEeeCCHHHHHh
Confidence 23333355677777777777666
No 338
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=61.10 E-value=34 Score=27.49 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=30.6
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccC-CCCeEEEEecCCccccc
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQ-SDKFMLVLASNTPQQFD 101 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~-~~~v~vI~tTn~~~~ld 101 (242)
+|.++++||-..-+. ......+.++|..+-.. .+...+|.+|+.++.+.
T Consensus 131 ~p~illlDEP~~glD--------~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~ 180 (198)
T cd03276 131 ESPFRCLDEFDVFMD--------MVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLA 180 (198)
T ss_pred CCCEEEecCcccccC--------HHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccc
Confidence 399999999877642 23344445555554222 23456777888877665
No 339
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=61.06 E-value=11 Score=38.19 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=29.2
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEec
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLAS 94 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tT 94 (242)
.++|+|||+|.+ ...+...+..+|..+...+.+|+++-||
T Consensus 594 ~svlVlDEVHaY---------D~~~~~~L~rlL~w~~~lG~~VlLmSAT 633 (1110)
T TIGR02562 594 SSDLILDEPDDY---------EPEDLPALLRLVQLAGLLGSRVLLSSAT 633 (1110)
T ss_pred CCCEEEECCccC---------CHHHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 599999999999 3445667777877666667776555444
No 340
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=60.58 E-value=67 Score=25.42 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=33.6
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHH
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWA 103 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~a 103 (242)
+..|-... |.++++||--+=+ .......+..+|..+.. . +..+|.+|+++..+..+
T Consensus 134 la~al~~~-p~~lllDEP~~~L--------D~~~~~~l~~~l~~~~~-~-~~tiii~sh~~~~i~~~ 189 (195)
T PRK13541 134 IARLIACQ-SDLWLLDEVETNL--------SKENRDLLNNLIVMKAN-S-GGIVLLSSHLESSIKSA 189 (195)
T ss_pred HHHHHhcC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHHh-C-CCEEEEEeCCccccchh
Confidence 33444344 9999999976543 23345555566654422 2 34777788887766653
No 341
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=60.13 E-value=35 Score=29.09 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=36.8
Q ss_pred hHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccc
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADA 56 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~ 56 (242)
++|-.|.-+++.++.+..+. ++. .+-...++.++..|.-.++|++++|+|-+-
T Consensus 47 l~rLaa~i~~~~~~~i~~~~--~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi 100 (268)
T PF12780_consen 47 LARLAAFICGYEVFQIEITK--GYSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQI 100 (268)
T ss_dssp HHHHHHHHTTEEEE-TTTST--TTHHHHHHHHHHHHHHHHHCS-S-EEEEEECCCS
T ss_pred HHHHHHHHhccceEEEEeeC--CcCHHHHHHHHHHHHHHHhccCCCeEEEecCccc
Confidence 57777888888888887543 222 455678999998888666699999988643
No 342
>COG1106 Predicted ATPases [General function prediction only]
Probab=59.93 E-value=25 Score=31.54 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 27 SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 27 g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
|++-+.+-.+...-...+ -.+++|||+|.... +..+...+..+... .....+.+++||....-+|-.+.+
T Consensus 253 ~~G~kk~~~i~~~l~~~~-~k~l~iDEie~~lH-------p~lm~~~l~~~~~~--~~~~niq~~~TTH~~e~id~~l~~ 322 (371)
T COG1106 253 GEGFKKALIIVPLLSDLN-DKVLLIDEIENGLH-------PSLMILILETLEDK--VKNNNIQVFLTTHSTEFIDLLLER 322 (371)
T ss_pred cchHHHHHHHHhhhhhcC-CceEEeehhhhccC-------HHHHHHHHHHHHhh--cccceEEEEeecccHHHHHHHHHh
Confidence 455444444444444444 47999999999863 22233333333222 223368999999999999988874
Q ss_pred c
Q psy4165 107 R 107 (242)
Q Consensus 107 R 107 (242)
|
T Consensus 323 ~ 323 (371)
T COG1106 323 R 323 (371)
T ss_pred h
Confidence 4
No 343
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=59.46 E-value=32 Score=26.57 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=33.1
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|--.. |.|+++||--+-+ ....++.+..+|.++... +..+|.+|.+++.+.
T Consensus 93 laral~~~-p~illlDEP~~~L--------D~~~~~~l~~~l~~~~~~--~~tiii~sh~~~~~~ 146 (163)
T cd03216 93 IARALARN-ARLLILDEPTAAL--------TPAEVERLFKVIRRLRAQ--GVAVIFISHRLDEVF 146 (163)
T ss_pred HHHHHhcC-CCEEEEECCCcCC--------CHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHH
Confidence 44455455 9999999965433 334556666777666322 346666777765443
No 344
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=59.41 E-value=47 Score=26.57 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=32.9
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|-... |.|+++||--.=+ ....+..+..+|..+... +..+|.+|..++.++
T Consensus 140 la~al~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~~--~~tiii~sh~~~~i~ 193 (204)
T PRK13538 140 LARLWLTR-APLWILDEPFTAI--------DKQGVARLEALLAQHAEQ--GGMVILTTHQDLPVA 193 (204)
T ss_pred HHHHHhcC-CCEEEEeCCCccC--------CHHHHHHHHHHHHHHHHC--CCEEEEEecChhhhc
Confidence 34444444 9999999965432 233455566666666322 236777788776665
No 345
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=58.62 E-value=1e+02 Score=25.56 Aligned_cols=61 Identities=18% Similarity=0.140 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 30 VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 30 e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
-+.+..+++.+. +.++|+|||+-.= ....+...+...++..+... .+..+|.||+..+-..
T Consensus 110 ~~~~~~il~~~~---~~sLvliDE~g~g-------T~~~eg~ai~~aile~l~~~-~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 110 MKRLSSILRNAT---EKSLVLIDELGRG-------TNPEEGIAIAIAILEYLLEK-SGCFVIIATHFHELAE 170 (235)
T ss_dssp HHHHHHHHHH-----TTEEEEEESTTTT-------SSHHHHHHHHHHHHHHHHHT-TT-EEEEEES-GGGGG
T ss_pred HHHHHhhhhhcc---cceeeecccccCC-------CChhHHHHHHHHHHHHHHHh-ccccEEEEeccchhHH
Confidence 356777777655 2599999996321 11222334444555555432 2347888998876433
No 346
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=58.61 E-value=6.9 Score=30.41 Aligned_cols=14 Identities=50% Similarity=0.432 Sum_probs=10.8
Q ss_pred CcEEEEEecccccc
Q psy4165 45 KGLVLFIDEADAFL 58 (242)
Q Consensus 45 ~p~Il~iDeiD~l~ 58 (242)
+|.+|+|||+|.+.
T Consensus 150 ~~~vlviDd~d~~~ 163 (185)
T PF13191_consen 150 KPLVLVIDDLDWAD 163 (185)
T ss_dssp --EEEEEETTTHHH
T ss_pred CeEEEEEeCCCCCC
Confidence 37999999999774
No 347
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=58.31 E-value=50 Score=33.08 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=41.4
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccH-----HHhcccccEEEeCCCC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDW-----AVNDRLDEMVEFPLPT 118 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~-----al~~Rfd~~i~~~~P~ 118 (242)
+|.++++||.-..+. .......+..++..+.+.+ ..+|.+|..+..+.. +++.-.+..|.+|.|.
T Consensus 687 ~p~illlDE~w~~L~-------d~~~~~~i~~~lk~~RK~g--~~vil~TQs~~d~~~s~i~~~ilen~~t~I~Lpn~~ 756 (852)
T PRK13891 687 QPAVIILDEAWLMLG-------HPAFRAKIREWLKVLRKAN--CLVLMATQSLSDAANSGILDVIVESTATKIFLPNVY 756 (852)
T ss_pred CCCEEEEeCchhhcC-------CHHHHHHHHHHHHHHHhcC--CEEEEEeCCHHHHhhCchHHHHHHcCCcceecCCCc
Confidence 499999999887763 1234555666666665443 366667777766643 3334556677777774
No 348
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=58.30 E-value=33 Score=32.19 Aligned_cols=108 Identities=18% Similarity=0.094 Sum_probs=54.6
Q ss_pred CeEEEEecCC---cccccHHHhcccccEEEeC--CC-CHHHHHHH---HHHHHhccccchhhhcccccccCCCChhHhHH
Q psy4165 87 KFMLVLASNT---PQQFDWAVNDRLDEMVEFP--LP-TLNERERL---VRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCS 157 (242)
Q Consensus 87 ~v~vI~tTn~---~~~ld~al~~Rfd~~i~~~--~P-~~~~R~~I---l~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~ 157 (242)
+|++||.-.. ....||.+...|....+|. .| +.+....+ +..+..+.++. +++.--+...++
T Consensus 388 KVILiG~~~~y~~L~~~D~dF~~lFkv~aef~~~~~~~~e~~~~~~~~i~~~~~~~~L~---------~~~~~Av~~li~ 458 (509)
T PF13654_consen 388 KVILIGDRELYYLLYEYDPDFYKLFKVKAEFDSEMPRTEENIRQYARFIASICQKEGLP---------PFDRSAVARLIE 458 (509)
T ss_dssp EEEEEE-TTHHHHS-HHHHHHHHHHSEEEE--SEEE--HHHHHHHHHHHHHHHHHHSS-----------BBHHHHHHHHH
T ss_pred EEEEEcCHHHHHHHHHhCHHHHhCCCEEEEccccCCCCHHHHHHHHHHHHHHHHhCCCC---------CCCHHHHHHHHH
Confidence 4778877644 5577899887665555554 22 33333332 22233322211 122211223445
Q ss_pred HHHHhCCC---CCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 158 KIAHVTEG---LSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 158 ~la~~t~g---~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
..++..+. ....+|..++.+|..-+.......|+.+++.+|++...
T Consensus 459 ~~~R~~q~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~r~ 507 (509)
T PF13654_consen 459 YSARLDQDKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEERR 507 (509)
T ss_dssp HHHHCC-SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH--
T ss_pred HHHHHhCCEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHccc
Confidence 55555332 67789999998554444445667999999999997653
No 349
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=58.28 E-value=1.1e+02 Score=25.54 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=27.8
Q ss_pred HhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhC-CCcEEEEEecccccccccCC
Q psy4165 8 HHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSS-RKGLVLFIDEADAFLRKRSS 63 (242)
Q Consensus 8 ~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~-~~p~Il~iDeiD~l~~~r~~ 63 (242)
.-.+.+++..+.+.+ +...|.......+.. .+..+||||-++.+-.....
T Consensus 98 ~l~~~~l~i~~~~~~------~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~ 148 (259)
T PF03796_consen 98 KLSDLPLYIEDTPSL------TIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSS 148 (259)
T ss_dssp HHHTSEEEEEESSS-------BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSS
T ss_pred HHhhCcEEEECCCCC------CHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCC
Confidence 334456555554443 223344444433332 33679999999998775433
No 350
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=58.12 E-value=14 Score=28.09 Aligned_cols=42 Identities=24% Similarity=0.350 Sum_probs=24.7
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecC
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASN 95 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn 95 (242)
..+|+|||+|.+... .....+..++..+....+.-+++.|+.
T Consensus 120 ~~~iViDE~h~l~~~--------~~~~~~~~i~~~~~~~~~~~~i~~SAT 161 (169)
T PF00270_consen 120 LSLIVIDEAHHLSDE--------TFRAMLKSILRRLKRFKNIQIILLSAT 161 (169)
T ss_dssp ESEEEEETHHHHHHT--------THHHHHHHHHHHSHTTTTSEEEEEESS
T ss_pred ceeeccCcccccccc--------cHHHHHHHHHHHhcCCCCCcEEEEeeC
Confidence 689999999999652 123355666666643323334444443
No 351
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=57.34 E-value=1.6e+02 Score=27.15 Aligned_cols=53 Identities=9% Similarity=0.213 Sum_probs=32.5
Q ss_pred hHHHHHHhCCCCCHHHHHHHHHHHHHHH-hhhcCCCccHHHHHHHHHHHHHhhh
Q psy4165 155 LCSKIAHVTEGLSGREIAKLGVAWQASA-YASEDGVLTEAMVMSKVEDSIRAHK 207 (242)
Q Consensus 155 ~l~~la~~t~g~s~adi~~lv~~a~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~ 207 (242)
.++...+.-.+++.+|...+-+...... +-.-.+.++.++++..++-++...+
T Consensus 385 ~~~~~~~l~~~~~~RD~~aV~kt~SgllKLL~P~~~~~~ee~~~~l~~Ale~Rr 438 (449)
T TIGR02688 385 IVDRHFSLSPNLNTRDVIAVKKTFSGLMKILFPHGTITKEEFTECLEPALEGRQ 438 (449)
T ss_pred hhhhheecCCCcchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3344555556789999887765222111 1134467899999888866655433
No 352
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=56.46 E-value=1.1e+02 Score=24.95 Aligned_cols=18 Identities=11% Similarity=-0.034 Sum_probs=14.0
Q ss_pred HhCCCcEEEEEeccccccc
Q psy4165 41 SSSRKGLVLFIDEADAFLR 59 (242)
Q Consensus 41 ~~~~~p~Il~iDeiD~l~~ 59 (242)
+... |-+|+||-+..+..
T Consensus 120 ~~~~-~~~vvID~l~~l~~ 137 (242)
T cd00984 120 KEHG-LGLIVIDYLQLMSG 137 (242)
T ss_pred HhcC-CCEEEEcCchhcCC
Confidence 3344 89999999998754
No 353
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=55.90 E-value=34 Score=27.59 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 31 TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 31 ~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
..+.++++.+.... |.+|++||.-.-.. ..........++..+... +..+|.+|..++.+.
T Consensus 92 ~~~~~iL~~~~~~~-p~llllDEp~~glD-------~~~~~~l~~~ll~~l~~~--~~tiiivTH~~~~~~ 152 (199)
T cd03283 92 RRLKEIVEKAKKGE-PVLFLLDEIFKGTN-------SRERQAASAAVLKFLKNK--NTIGIISTHDLELAD 152 (199)
T ss_pred HHHHHHHHhccCCC-CeEEEEecccCCCC-------HHHHHHHHHHHHHHHHHC--CCEEEEEcCcHHHHH
Confidence 45677777666434 99999999632110 111223344556655422 457888888776553
No 354
>COG3899 Predicted ATPase [General function prediction only]
Probab=55.65 E-value=1.1e+02 Score=30.74 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=66.3
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNE 121 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~ 121 (242)
|-|+|+||++-. .+..-..+..++..+. .+...-+....++++. +.+... .++ ..|.+.+.+..+
T Consensus 155 plVi~leDlhWa---------D~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~-~~~~~~~~~~i-~~I~L~PL~~~d 223 (849)
T COG3899 155 PLVIVLEDLHWA---------DSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPT-LGEILKSATNI-TTITLAPLSRAD 223 (849)
T ss_pred CeEEEEeccccc---------ChhHHHHHHHHHHhcchhhhhccccccCCCccch-hhHHhhcCCce-eEEecCcCchhh
Confidence 999999999887 3334455555555543 2322234444444443 233333 344 488999999999
Q ss_pred HHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 122 RERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 122 R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
-..++...+..- .......++.+.++|.| +|-=+.++++
T Consensus 224 ~~~lV~~~l~~~---------------~~~~~p~~~~i~~kt~G-nPfFi~e~lk 262 (849)
T COG3899 224 TNQLVAATLGCT---------------KLLPAPLLELIFEKTKG-NPFFIEEFLK 262 (849)
T ss_pred HHHHHHHHhCCc---------------ccccchHHHHHHHHhcC-CCccHHHHHH
Confidence 999999988751 11112334789999999 8877777775
No 355
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=54.14 E-value=41 Score=26.93 Aligned_cols=55 Identities=16% Similarity=0.076 Sum_probs=31.3
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.|+++||--.-+ ....+..+..++.++....+..++|.+++..+.+
T Consensus 129 laral~~~-p~llllDEPt~~L--------D~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~ 183 (202)
T cd03233 129 IAEALVSR-ASVLCWDNSTRGL--------DSSTALEILKCIRTMADVLKTTTFVSLYQASDEI 183 (202)
T ss_pred HHHHHhhC-CCEEEEcCCCccC--------CHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHH
Confidence 33444344 9999999954432 3345556666776664333344566666654433
No 356
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=54.13 E-value=37 Score=30.02 Aligned_cols=66 Identities=23% Similarity=0.346 Sum_probs=36.6
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHH-HHHHHHHHHhccCCCCeEEEEecCCcccccHHHh--ccc-----cc
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLR-ATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVN--DRL-----DE 110 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~-~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~--~Rf-----d~ 110 (242)
.|-... |-|+++||.=+-+ ..-.+ .+..+||.--......|++| | ++||+|++ .|. ..
T Consensus 177 RAla~~-~~IlLMDEaFSAL--------DPLIR~~mQdeLl~Lq~~l~KTIvFi-t----HDLdEAlriG~rIaimkdG~ 242 (386)
T COG4175 177 RALAND-PDILLMDEAFSAL--------DPLIRTEMQDELLELQAKLKKTIVFI-T----HDLDEALRIGDRIAIMKDGE 242 (386)
T ss_pred HHHccC-CCEEEecCchhhc--------ChHHHHHHHHHHHHHHHHhCCeEEEE-e----cCHHHHHhccceEEEecCCe
Confidence 334455 9999999964433 12222 23333433222333333333 3 67999999 453 56
Q ss_pred EEEeCCCC
Q psy4165 111 MVEFPLPT 118 (242)
Q Consensus 111 ~i~~~~P~ 118 (242)
.|.++.|.
T Consensus 243 ivQ~Gtp~ 250 (386)
T COG4175 243 IVQVGTPE 250 (386)
T ss_pred EEEeCCHH
Confidence 78888773
No 357
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=54.00 E-value=1.4e+02 Score=29.81 Aligned_cols=65 Identities=11% Similarity=0.049 Sum_probs=43.3
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccH--------HHhcccccEEEeCCC
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDW--------AVNDRLDEMVEFPLP 117 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~--------al~~Rfd~~i~~~~P 117 (242)
|.+++|||+..++... .......+..++..+.++++ .++++|..+.++.. +++.-.+.+|.++.+
T Consensus 660 ~~~~viDEaw~lL~~~-----~~~~~~fi~~~~r~~RK~~g--~~i~~TQsi~D~~~~~~s~~a~ail~ns~~kilL~q~ 732 (844)
T PRK13721 660 KKLNVIDEGWRLLDFK-----NHKVGEFIEKGYRTARRHTG--AYITITQNIVDFDSDKASSAARAAWGNSSYKIILKQS 732 (844)
T ss_pred eEEEEEhhHHHHhccC-----ChHHHHHHHHHHHHHHHhCC--eEEEEecCHHHhhcccccHHHHHHHhcCcEEEeecCC
Confidence 7899999999997421 12234455566655655554 56666877776643 555777888888876
No 358
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=52.99 E-value=38 Score=27.50 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=13.3
Q ss_pred cEEEEEecccccccc
Q psy4165 46 GLVLFIDEADAFLRK 60 (242)
Q Consensus 46 p~Il~iDeiD~l~~~ 60 (242)
+.+|+||.+..++..
T Consensus 108 ~~lvVIDsi~al~~~ 122 (225)
T PRK09361 108 VGLIVLDSATSLYRL 122 (225)
T ss_pred ccEEEEeCcHHHhHH
Confidence 899999999998754
No 359
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=52.88 E-value=21 Score=35.87 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=41.4
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHH---HhcccccEEEeCCCC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWA---VNDRLDEMVEFPLPT 118 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~a---l~~Rfd~~i~~~~P~ 118 (242)
+|.+++|||+..++. .......+..++..+.++++ .++++|..+.++... ++.-.+.+|.++.|.
T Consensus 733 r~~~~viDEaw~l~~-------~~~~a~fi~~~~k~~RK~g~--~~~~aTQsi~D~~~sa~~il~ns~~~i~L~q~~ 800 (893)
T TIGR03744 733 RPIVMVTDEGHIITT-------NPLLAPYVVKITKMWRKLGA--WFWLATQNLADFPDSAEKMLNMIEWWLCLNMPP 800 (893)
T ss_pred ceEEEEeehHhhhhc-------CHHHHHHHHHHHHHHHhcCc--EEEEEeCCHHHhhhHHHHHHHhchhhhhhcCCH
Confidence 489999999998742 22234455556655655544 777888777776533 334556666666654
No 360
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=52.86 E-value=44 Score=28.73 Aligned_cols=56 Identities=13% Similarity=0.181 Sum_probs=35.6
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccH
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDW 102 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~ 102 (242)
+..|--.. |.++|+||=-+ +-....+..+.++|..+.... +..|+.+|..++.+..
T Consensus 147 ia~aL~~~-P~lliLDEPt~--------GLDp~~~~~~~~~l~~l~~~g-~~tvlissH~l~e~~~ 202 (293)
T COG1131 147 IALALLHD-PELLILDEPTS--------GLDPESRREIWELLRELAKEG-GVTILLSTHILEEAEE 202 (293)
T ss_pred HHHHHhcC-CCEEEECCCCc--------CCCHHHHHHHHHHHHHHHhCC-CcEEEEeCCcHHHHHH
Confidence 33444455 99999999422 123445566677777764333 2688888888877664
No 361
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=52.16 E-value=51 Score=26.60 Aligned_cols=53 Identities=11% Similarity=-0.046 Sum_probs=32.7
Q ss_pred HHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 38 DWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 38 ~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
..|--.. |.|+++||--+-+ ....+..+.++|..+... + ..+|.+|..++.++
T Consensus 149 aral~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~~-~-~tiii~sH~~~~~~ 201 (214)
T PRK13543 149 ARLWLSP-APLWLLDEPYANL--------DLEGITLVNRMISAHLRG-G-GAALVTTHGAYAAP 201 (214)
T ss_pred HHHHhcC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHHhC-C-CEEEEEecChhhhh
Confidence 3344344 9999999975433 334556667777666332 2 36777787776655
No 362
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=52.08 E-value=47 Score=25.78 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=32.4
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.|+++||--.-+ ....+..+.++|..+... + ..+|.+|+.++.+
T Consensus 106 laral~~~-p~illlDEPt~~L--------D~~~~~~l~~~l~~~~~~-g-~tiii~th~~~~~ 158 (173)
T cd03230 106 LAQALLHD-PELLILDEPTSGL--------DPESRREFWELLRELKKE-G-KTILLSSHILEEA 158 (173)
T ss_pred HHHHHHcC-CCEEEEeCCccCC--------CHHHHHHHHHHHHHHHHC-C-CEEEEECCCHHHH
Confidence 44444455 9999999976543 334556666677666333 3 3566777765543
No 363
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=51.51 E-value=67 Score=31.13 Aligned_cols=54 Identities=11% Similarity=0.155 Sum_probs=33.2
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHHHHHHHH-hhhcCCCccHHHHHHHHHHHHHh
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGVAWQASA-YASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~~a~~~~-~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+...++...+.-.+++.+|...+-+...... +-.-++.++.++++..++-++..
T Consensus 389 ~~~~~~~~~~l~~~~~~RD~~aV~kt~SgllKLl~P~~~~~~ee~e~~l~~Ale~ 443 (675)
T TIGR02653 389 FADAIDRFFKLGNNLNQRDVIAVRKTVSGLLKLLYPDGEYTKDDVRECLTYAMEG 443 (675)
T ss_pred HHHHHHhhEecCCCCchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 3334455555667899999987765322111 11344678999999887655544
No 364
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=51.15 E-value=32 Score=32.28 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=5.2
Q ss_pred ccHHHHHHHHHHH
Q psy4165 190 LTEAMVMSKVEDS 202 (242)
Q Consensus 190 ~~~~~~~~a~~~~ 202 (242)
++-.++..++.++
T Consensus 438 ~sGa~i~~iv~~a 450 (512)
T TIGR03689 438 VSGAMIANIVDRA 450 (512)
T ss_pred ccHHHHHHHHHHH
Confidence 3344444443333
No 365
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=50.86 E-value=78 Score=25.28 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=36.5
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
+..|-... |.++++||--+=+ ....+..+..+|.++... +..||.+|..++.+. .-+|+.+.+
T Consensus 145 laral~~~-p~llllDEPt~~L--------D~~~~~~~~~~l~~~~~~--~~tvi~~sH~~~~~~----~~~d~i~~l 207 (211)
T cd03225 145 IAGVLAMD-PDILLLDEPTAGL--------DPAGRRELLELLKKLKAE--GKTIIIVTHDLDLLL----ELADRVIVL 207 (211)
T ss_pred HHHHHhcC-CCEEEEcCCcccC--------CHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHH----HhCCEEEEE
Confidence 33444344 9999999965432 334555666677666432 346777777765443 224555544
No 366
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=50.44 E-value=1e+02 Score=24.62 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCc
Q psy4165 32 AIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTP 97 (242)
Q Consensus 32 ~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~ 97 (242)
.++++...+....+|.++++||.-.-.. ......+...++..+... +..+|.+|...
T Consensus 95 g~~~~~~i~~~~~~p~llllDEp~~glD-------~~~~~~i~~~~l~~l~~~--~~~vi~~tH~~ 151 (200)
T cd03280 95 HMKNIARILQHADPDSLVLLDELGSGTD-------PVEGAALAIAILEELLER--GALVIATTHYG 151 (200)
T ss_pred HHHHHHHHHHhCCCCcEEEEcCCCCCCC-------HHHHHHHHHHHHHHHHhc--CCEEEEECCHH
Confidence 3344444444344599999999765331 122223334455555322 34667777753
No 367
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=50.39 E-value=92 Score=24.71 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=31.6
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQ 98 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~ 98 (242)
+..|-... |.++++||--+-+ ....+..+.++|..+... +..+|.+|.+++
T Consensus 145 laral~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~~--~~tii~~sh~~~ 195 (206)
T TIGR03608 145 LARAILKD-PPLILADEPTGSL--------DPKNRDEVLDLLLELNDE--GKTIIIVTHDPE 195 (206)
T ss_pred HHHHHHcC-CCEEEEeCCcCCC--------CHHHHHHHHHHHHHHHhc--CCEEEEEeCCHH
Confidence 44444445 9999999976543 334556666777666432 335666777665
No 368
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=50.37 E-value=97 Score=22.60 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=33.2
Q ss_pred HHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEeccccccc
Q psy4165 4 KKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59 (242)
Q Consensus 4 ~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~ 59 (242)
+..|...|+.+..+-...-.+.. ......+.+++..++... +.+|++.++|.|+.
T Consensus 24 ~~~a~~~g~~i~~~~~d~~~s~~~~~~R~~~~~ll~~~~~~~-~d~ivv~~~~Rl~R 79 (137)
T cd00338 24 REYAARNGLEVVGEYEDAGSSATSLVDRPGLQRLLADVKAGK-IDVVLVEKLDRLSR 79 (137)
T ss_pred HHHHHHCCCEEEEEEEeCCCCcccccCCHHHHHHHHHHHcCC-CCEEEEEecchhhC
Confidence 34455556655443222211211 223457888888888644 78999999999965
No 369
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=50.35 E-value=86 Score=25.15 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=36.6
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
+..|-... |.|+++||--+-+ ....+..+..+|.++.. . +..+|.+|.+++.+. .-+|+.+.+
T Consensus 149 laral~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~----~~~d~i~~l 211 (216)
T TIGR00960 149 IARAIVHK-PPLLLADEPTGNL--------DPELSRDIMRLFEEFNR-R-GTTVLVATHDINLVE----TYRHRTLTL 211 (216)
T ss_pred HHHHHhcC-CCEEEEeCCCCcC--------CHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHH----HhCCEEEEE
Confidence 44444445 9999999964433 33455566667766632 2 346777787765443 234555554
No 370
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=50.15 E-value=77 Score=27.60 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=33.0
Q ss_pred HHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 35 KVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 35 ~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
-.+..|-... |.||++||--+=+ .......+.++|..+.. . +..||.+|.+++.+
T Consensus 185 vaiAraL~~~-p~iLLLDEPtsgL--------D~~~~~~l~~~L~~l~~-~-g~TiiivtHd~~~~ 239 (320)
T PRK13631 185 VAIAGILAIQ-PEILIFDEPTAGL--------DPKGEHEMMQLILDAKA-N-NKTVFVITHTMEHV 239 (320)
T ss_pred HHHHHHHHcC-CCEEEEECCccCC--------CHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHH
Confidence 3344555455 9999999964432 23345555566666532 2 34677778776644
No 371
>KOG0480|consensus
Probab=49.75 E-value=98 Score=29.97 Aligned_cols=89 Identities=16% Similarity=-0.009 Sum_probs=58.4
Q ss_pred cccccHHHh-cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHH
Q psy4165 97 PQQFDWAVN-DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLG 175 (242)
Q Consensus 97 ~~~ld~al~-~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv 175 (242)
++.++.--+ =||-+ -.+|.-+.+....|.+.|..-.. .+. ....+.+-+.|.++|+.++
T Consensus 557 ~~~~e~vrkYi~yAR-~~~P~ls~ea~~~lve~Y~~lR~-------------~~~------~~~~~~s~~ITvRqLESlI 616 (764)
T KOG0480|consen 557 VYTLEQVRKYIRYAR-NFKPKLSKEASEMLVEKYKGLRQ-------------RDA------QGNNRSSYRITVRQLESLI 616 (764)
T ss_pred cccHHHHHHHHHHHH-hcCccccHHHHHHHHHHHHHHHH-------------hhc------cccCcccccccHHHHHHHH
Confidence 444443322 34554 45677788999988888864210 110 1122334478999999999
Q ss_pred HHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 176 VAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+-++|.+...-...+|.++.+++.+-..+.
T Consensus 617 RLsEA~Ar~~~~devt~~~v~ea~eLlk~S 646 (764)
T KOG0480|consen 617 RLSEARARVECRDEVTKEDVEEAVELLKKS 646 (764)
T ss_pred HHHHHHHhhhhhhhccHHHHHHHHHHHHhh
Confidence 977777777677789999999998766443
No 372
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=49.75 E-value=94 Score=24.74 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=36.2
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
+..|-... |.++++||--+=+ ....+..+..+|..+.. . +..+|.+|..++.+. ...|+.+.+
T Consensus 137 laral~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~-~-~~tii~~sH~~~~~~----~~~d~i~~l 199 (205)
T cd03226 137 IAAALLSG-KDLLIFDEPTSGL--------DYKNMERVGELIRELAA-Q-GKAVIVITHDYEFLA----KVCDRVLLL 199 (205)
T ss_pred HHHHHHhC-CCEEEEeCCCccC--------CHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHH----HhCCEEEEE
Confidence 33444344 9999999964432 33455566667766632 2 346777777765433 234555544
No 373
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=49.28 E-value=57 Score=29.82 Aligned_cols=101 Identities=11% Similarity=0.127 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc-cHHHh
Q psy4165 29 GVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF-DWAVN 105 (242)
Q Consensus 29 ~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l-d~al~ 105 (242)
.|.++..+.+.+...+ |.+++||-|..+....-++. .-...+....+|+..-...+-.+++++-...-..| =|.++
T Consensus 153 aEt~~e~I~~~l~~~~-p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG~IAGPrvL 231 (456)
T COG1066 153 AETNLEDIIAELEQEK-PDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEGAIAGPRVL 231 (456)
T ss_pred hhcCHHHHHHHHHhcC-CCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEcccccccCchhe
Confidence 4678889999998877 99999999999987653322 22334555555544333334445666643332222 23333
Q ss_pred -cccccEEEeCCCCHHHHHHHHHHHHh
Q psy4165 106 -DRLDEMVEFPLPTLNERERLVRLYFD 131 (242)
Q Consensus 106 -~Rfd~~i~~~~P~~~~R~~Il~~~l~ 131 (242)
.-.|..++|. -+...+.+||+.+=.
T Consensus 232 EHmVDtVlyFE-Gd~~~~~RiLR~vKN 257 (456)
T COG1066 232 EHMVDTVLYFE-GDRHSRYRILRSVKN 257 (456)
T ss_pred eeeeeEEEEEe-ccCCCceeeeehhcc
Confidence 4456666664 344455666665543
No 374
>PF12696 TraG-D_C: TraM recognition site of TraD and TraG
Probab=49.03 E-value=1e+02 Score=22.55 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=45.4
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccH--------HHhcccccEEEeCCC
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDW--------AVNDRLDEMVEFPLP 117 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~--------al~~Rfd~~i~~~~P 117 (242)
|..+++||+-.+++- ..+..++.... +.++.+++++.....|.. ++++=+..++.++..
T Consensus 1 pv~~~lDE~~~~~~~-----------~~l~~~~~~~r--~~gi~~~~~~Qs~~ql~~~yG~~~~~~i~~n~~~~~~~~~~ 67 (128)
T PF12696_consen 1 PVLFILDEFGNLGPI-----------PGLEDLLATGR--SYGISFILAFQSLAQLEAKYGKEGAESILGNCNNKIFFGSN 67 (128)
T ss_pred CEEEEEEChhhcCCc-----------HhHHHHHHHHh--cCCCEEEEEEccHHHHHHHHCHHHHHHHHHhcCceEeccCC
Confidence 789999999988641 12344444443 445677777766555533 333568888888855
Q ss_pred CHHHHHHHHHHHHhc
Q psy4165 118 TLNERERLVRLYFDK 132 (242)
Q Consensus 118 ~~~~R~~Il~~~l~~ 132 (242)
+. +-.+.+...+.+
T Consensus 68 d~-~t~e~~s~~~G~ 81 (128)
T PF12696_consen 68 DP-ETAEYISKLLGE 81 (128)
T ss_pred CH-HHHHHHHHHhCC
Confidence 55 555555666654
No 375
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=48.83 E-value=1.3e+02 Score=23.87 Aligned_cols=48 Identities=19% Similarity=0.052 Sum_probs=26.2
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
.|.++++||.-.-.. ..........++..+... +..+|.+|...+.+.
T Consensus 108 ~~~llllDEp~~gld-------~~~~~~l~~~ll~~l~~~--~~~vi~~tH~~~~~~ 155 (202)
T cd03243 108 PRSLVLIDELGRGTS-------TAEGLAIAYAVLEHLLEK--GCRTLFATHFHELAD 155 (202)
T ss_pred CCeEEEEecCCCCCC-------HHHHHHHHHHHHHHHHhc--CCeEEEECChHHHHH
Confidence 499999999754321 111223334455555322 346667777655444
No 376
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=48.81 E-value=86 Score=26.71 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=33.9
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|-... |.||++||--.-+ ....+..+..+|..+... +..||.+|..++.+.
T Consensus 155 iA~aL~~~-p~illLDEPt~gL--------D~~~~~~l~~~l~~l~~~--g~til~vtHd~~~~~ 208 (288)
T PRK13643 155 IAGILAME-PEVLVLDEPTAGL--------DPKARIEMMQLFESIHQS--GQTVVLVTHLMDDVA 208 (288)
T ss_pred HHHHHHhC-CCEEEEECCccCC--------CHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHH
Confidence 44444455 9999999965443 233556666777766432 447777888765443
No 377
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=48.50 E-value=21 Score=32.06 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=27.0
Q ss_pred hHHHHHHhcC--CcEEEEecCCcccc-cchHHHHHHHHHHHHH
Q psy4165 2 FAKKLAHHSG--MDYAIMTGGDVAPM-GSSGVTAIHKVFDWAS 41 (242)
Q Consensus 2 lA~aiA~e~~--~~~~~v~~~~l~~~-~g~~e~~l~~~f~~A~ 41 (242)
||-+||+++| +||..++++++.|. +..+| .|.+.|++|.
T Consensus 66 lA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE-~L~qa~RraI 107 (398)
T PF06068_consen 66 LAMAIAKELGEDVPFVSISGSEIYSSEVKKTE-ALTQAFRRAI 107 (398)
T ss_dssp HHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHH-HHHHHHHCSE
T ss_pred HHHHHHHHhCCCCCeeEcccceeeecccCchH-HHHHHHHHhh
Confidence 6889999999 79999999999874 33343 4566666554
No 378
>KOG0732|consensus
Probab=48.30 E-value=9.8 Score=38.51 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=38.1
Q ss_pred cCCcEEEEecCCccccc--chHHHHHHHHHHHHHhCCCcEEEEEeccccccccc
Q psy4165 10 SGMDYAIMTGGDVAPMG--SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKR 61 (242)
Q Consensus 10 ~~~~~~~v~~~~l~~~~--g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r 61 (242)
.+.++.....+.+.+.. ++.+..+..+|.+|+... ||||||=++|.-....
T Consensus 617 ~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~-psi~~ip~~d~w~~~~ 669 (1080)
T KOG0732|consen 617 EGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTT-PSIVFIPNVDEWARVI 669 (1080)
T ss_pred hccchHHHHHHHHHhccccccHHHHHHHHHHHHhccC-CceeeccchhhhhhcC
Confidence 34555555555665533 567889999999999888 9999999999775443
No 379
>PRK11823 DNA repair protein RadA; Provisional
Probab=48.06 E-value=63 Score=29.70 Aligned_cols=60 Identities=8% Similarity=0.103 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEecccccccccCC--CccchHHHHHHHHHHHHhccCCCCeEEEE
Q psy4165 32 AIHKVFDWASSSRKGLVLFIDEADAFLRKRSS--ETISESLRATLNAFLYRTGEQSDKFMLVL 92 (242)
Q Consensus 32 ~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~--~~~~~~~~~~l~~lL~~l~~~~~~v~vI~ 92 (242)
.+.++++..++.. |.+|+||.+..+....-. .+.....+..+..|.......+-.+++++
T Consensus 144 ~l~~i~~~i~~~~-~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~ 205 (446)
T PRK11823 144 NLEAILATIEEEK-PDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVG 205 (446)
T ss_pred CHHHHHHHHHhhC-CCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 4566667776666 999999999998754322 11122244445555444444433344443
No 380
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=47.98 E-value=1.2e+02 Score=24.45 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=36.0
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeC
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFP 115 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~ 115 (242)
+..|--.. |.++++||--.-+ .......+..+|..+.. . +..+|.+|.++..+. .-.|+.+.+.
T Consensus 160 laral~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~-~-g~tii~vsH~~~~~~----~~~d~i~~~~ 223 (224)
T TIGR02324 160 IARGFIAD-YPILLLDEPTASL--------DAANRQVVVELIAEAKA-R-GAALIGIFHDEEVRE----LVADRVMDVT 223 (224)
T ss_pred HHHHHhcC-CCEEEEcCCcccC--------CHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHH----HhcceeEecC
Confidence 44444444 9999999965433 23455566667766632 2 346677777654332 2235555543
No 381
>PRK05907 hypothetical protein; Provisional
Probab=47.93 E-value=1.9e+02 Score=25.20 Aligned_cols=139 Identities=10% Similarity=0.074 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhCC---CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCC-eEEEEecCCccccc---HHH
Q psy4165 32 AIHKVFDWASSSR---KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDK-FMLVLASNTPQQFD---WAV 104 (242)
Q Consensus 32 ~l~~~f~~A~~~~---~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~-v~vI~tTn~~~~ld---~al 104 (242)
.+.++++.|.... ..-+|++.+.+.+.. .....|...+++.+.. ++||.+.+ .+..+ ..+
T Consensus 53 ~~~~ii~~aetlPfFaerRlV~v~~~~~~~~------------~~~~~L~~Yl~np~~~~~liv~~~~-~d~~kkl~K~i 119 (311)
T PRK05907 53 LQQELLSWTEHFGLFASQETIGIYQAEKMSS------------STQEFLIRYARNPNPHLTLFLFTTK-QECFSSLSKKL 119 (311)
T ss_pred CHHHHHHHHhcCCcccCeEEEEEeccccccc------------ccHHHHHHHHhCCCCCeEEEEEEec-ccHHHHHHHHH
Confidence 3566677776541 234555555432210 1123556666544443 55534332 33322 223
Q ss_pred h--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHH-HH
Q psy4165 105 N--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQ-AS 181 (242)
Q Consensus 105 ~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~-~~ 181 (242)
. +-++..++++++...+-..-+...+++.+.. .+ ...++.+..++.| .++..+.++.+ ..
T Consensus 120 ~k~~~v~~~~e~~~l~e~~L~~Wi~~~~~~~g~~----------i~----~~a~~~L~~~~~~---~nL~~l~~EleKL~ 182 (311)
T PRK05907 120 SSALCLSLFGEWFADRDKRIAQLLIQRAKELGIS----------CS----LGLASLFVSKFPQ---TGLFEILSEFQKLL 182 (311)
T ss_pred hhcceeccccccCCCCHHHHHHHHHHHHHHcCCC----------cC----HHHHHHHHHHccC---CCHHHHHHHHHHHH
Confidence 2 1112225888888888888888888764332 22 2334667777633 45555555443 44
Q ss_pred HhhhcCCCccHHHHHHHHH
Q psy4165 182 AYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 182 ~~~~~~~~~~~~~~~~a~~ 200 (242)
.++..++.||.++++..+.
T Consensus 183 ly~g~~~~It~e~V~~lv~ 201 (311)
T PRK05907 183 CQMGKKESLEASDIQSFVV 201 (311)
T ss_pred HhcCCCCeECHHHHHHHhc
Confidence 5556677899998887743
No 382
>PRK04296 thymidine kinase; Provisional
Probab=47.49 E-value=81 Score=25.05 Aligned_cols=58 Identities=12% Similarity=-0.007 Sum_probs=30.5
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecC----CcccccHHHhcccccEEEeC
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASN----TPQQFDWAVNDRLDEMVEFP 115 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn----~~~~ld~al~~Rfd~~i~~~ 115 (242)
+.+|+|||+..+- ...+.+++..+...+-.|++.+-.. .+..-.+.|....|..+++.
T Consensus 79 ~dvviIDEaq~l~------------~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~ 140 (190)
T PRK04296 79 IDCVLIDEAQFLD------------KEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELK 140 (190)
T ss_pred CCEEEEEccccCC------------HHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEee
Confidence 6899999996541 1123445555443332233333221 23334556666677776664
No 383
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=47.31 E-value=56 Score=25.75 Aligned_cols=56 Identities=14% Similarity=0.266 Sum_probs=33.5
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFP 115 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~ 115 (242)
+|.++++||.+.-+. ......+..+|..+... +..+|.+|.+++.+ ..+|+.+.+.
T Consensus 116 ~p~llilDEp~~~LD--------~~~~~~i~~~L~~~~~~--g~tiIiiSH~~~~~-----~~adrvi~i~ 171 (178)
T cd03239 116 PSPFYVLDEIDAALD--------PTNRRRVSDMIKEMAKH--TSQFIVITLKKEMF-----ENADKLIGVL 171 (178)
T ss_pred CCCEEEEECCCCCCC--------HHHHHHHHHHHHHHHhC--CCEEEEEECCHHHH-----hhCCeEEEEE
Confidence 489999999987653 33344555566655322 24666667765432 3466666553
No 384
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=47.12 E-value=67 Score=25.56 Aligned_cols=55 Identities=15% Similarity=0.036 Sum_probs=33.4
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccH
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDW 102 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~ 102 (242)
+..|-... |.++++||--.-+ ....+..+..+|..+.. . +..+|.+|..+..++.
T Consensus 138 laral~~~-p~~lilDEP~~~L--------D~~~~~~l~~~l~~~~~-~-~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 138 LLRLWMSK-AKLWLLDEPLVAL--------DELSLLTIITKIQEHRA-K-GGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHHHHhcC-CCEEEEeCCCccc--------CHHHHHHHHHHHHHHHH-c-CCEEEEEeCCchhccc
Confidence 34444445 9999999965433 33455566666666532 2 3467777877766653
No 385
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=46.86 E-value=1.4e+02 Score=26.58 Aligned_cols=74 Identities=9% Similarity=0.089 Sum_probs=46.5
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccH--------HHhcccccEEEeCC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDW--------AVNDRLDEMVEFPL 116 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~--------al~~Rfd~~i~~~~ 116 (242)
.|..+++||+-.+..- ..+...+.... +.++.+++.+.....|.. .+++=+..++.+..
T Consensus 263 ~~~~~~lDEf~~l~~i-----------~~l~~~~~~~r--~~gi~~~~~~Q~~~Ql~~~Yg~~~a~~i~~n~~~~~~~~~ 329 (384)
T cd01126 263 YRVLFLLDEFPLLGKL-----------ETFEKAIAIMA--GYGIRLLLIFQSLAQLEGTYGDAGASSFLSNCGVRLFFAV 329 (384)
T ss_pred cceEEEEcccccccch-----------HHHHHHHHHhc--CCCCEEEEEEEcHHHHHHHhCHhHHHHHHhhCceEEEecC
Confidence 4899999999988531 12334444443 456677777776666653 24466778888887
Q ss_pred CCHHHHHHHHHHHHhc
Q psy4165 117 PTLNERERLVRLYFDK 132 (242)
Q Consensus 117 P~~~~R~~Il~~~l~~ 132 (242)
.+.+..+ .+...+.+
T Consensus 330 ~d~~ta~-~iS~~lG~ 344 (384)
T cd01126 330 NDYETAR-YISKLLGT 344 (384)
T ss_pred CCHHHHH-HHHHHcCC
Confidence 7766654 44444443
No 386
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.74 E-value=1e+02 Score=25.36 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=32.7
Q ss_pred HHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 36 VFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 36 ~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
.+..|-... |.|+++||--+-+ .......+.++|..+.. +..+|.+|.+++.+.
T Consensus 152 ~laral~~~-p~lllLDEP~~~L--------D~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~ 205 (246)
T PRK14269 152 CIARALAIK-PKLLLLDEPTSAL--------DPISSGVIEELLKELSH---NLSMIMVTHNMQQGK 205 (246)
T ss_pred HHHHHHhcC-CCEEEEcCCcccC--------CHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHH
Confidence 355555455 9999999976543 23344555666666532 346777777665443
No 387
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=46.63 E-value=95 Score=25.45 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=32.7
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.|+++||-.+-+ .......+..+|..+.. . +..+|.+|.++..+
T Consensus 152 laral~~~-p~llilDEPt~~L--------D~~~~~~l~~~l~~~~~-~-~~tii~~sh~~~~~ 204 (242)
T PRK11124 152 IARALMME-PQVLLFDEPTAAL--------DPEITAQIVSIIRELAE-T-GITQVIVTHEVEVA 204 (242)
T ss_pred HHHHHhcC-CCEEEEcCCCCcC--------CHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHH
Confidence 44444444 9999999976543 23455666677776632 2 34666777776544
No 388
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=46.45 E-value=76 Score=25.29 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=32.4
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccH
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDW 102 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~ 102 (242)
+..|-... |.+|++||--+-+ ....+..+.++|.++... +..+|.+|.++..++.
T Consensus 136 laral~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~~--g~tiii~sH~~~~~~~ 190 (201)
T cd03231 136 LARLLLSG-RPLWILDEPTTAL--------DKAGVARFAEAMAGHCAR--GGMVVLTTHQDLGLSE 190 (201)
T ss_pred HHHHHhcC-CCEEEEeCCCCCC--------CHHHHHHHHHHHHHHHhC--CCEEEEEecCchhhhh
Confidence 34444344 9999999965543 233445556666555322 3367777777665554
No 389
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.20 E-value=1.2e+02 Score=24.80 Aligned_cols=55 Identities=11% Similarity=0.225 Sum_probs=32.2
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|-... |.+|++||--+-+ ....+..+..+|..+....+ ..||.+|.+++.+.
T Consensus 142 la~al~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~~~g-~tii~~sH~~~~~~ 196 (241)
T PRK14250 142 IARTLANN-PEVLLLDEPTSAL--------DPTSTEIIEELIVKLKNKMN-LTVIWITHNMEQAK 196 (241)
T ss_pred HHHHHhcC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHHHhCC-CEEEEEeccHHHHH
Confidence 34444444 9999999975543 23345566666666633223 35666777665443
No 390
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=46.08 E-value=96 Score=26.17 Aligned_cols=54 Identities=9% Similarity=0.167 Sum_probs=33.3
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|-... |.++++||--+-+ ....+..+..+|..+.. . +..||.+|.+++.+.
T Consensus 148 laral~~~-p~llllDEPt~gL--------D~~~~~~l~~~l~~l~~-~-~~til~vtH~~~~~~ 201 (275)
T PRK13639 148 IAGILAMK-PEIIVLDEPTSGL--------DPMGASQIMKLLYDLNK-E-GITIIISTHDVDLVP 201 (275)
T ss_pred HHHHHhcC-CCEEEEeCCCcCC--------CHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHH
Confidence 44555455 9999999975433 23345566667766632 2 346777777766544
No 391
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=45.92 E-value=58 Score=26.04 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=31.6
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
.|-... |.++++||--.-+ ....+..+..+|..+.. . +..+|.+|.+++.+
T Consensus 148 ~al~~~-p~llllDEP~~~L--------D~~~~~~l~~~l~~~~~-~-~~tvi~~sh~~~~~ 198 (213)
T cd03262 148 RALAMN-PKVMLFDEPTSAL--------DPELVGEVLDVMKDLAE-E-GMTMVVVTHEMGFA 198 (213)
T ss_pred HHHhcC-CCEEEEeCCccCC--------CHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHH
Confidence 333344 9999999965432 33456666777777643 2 34677778776544
No 392
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=45.80 E-value=1.3e+02 Score=24.24 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=33.0
Q ss_pred CcEEEEEecccccccccCCCccchHHHH-HHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRA-TLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFP 115 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~-~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~ 115 (242)
+|.++++||-..-+. ..... .+..++.++....+ ..+|.+|..++ +...+|+.+.+.
T Consensus 139 ~p~illlDEP~~~LD--------~~~~~~~l~~~l~~~~~~~~-~~iiiitH~~~-----~~~~~d~i~~l~ 196 (204)
T cd03240 139 NCGILALDEPTTNLD--------EENIEESLAEIIEERKSQKN-FQLIVITHDEE-----LVDAADHIYRVE 196 (204)
T ss_pred CCCEEEEcCCccccC--------HHHHHHHHHHHHHHHHhccC-CEEEEEEecHH-----HHhhCCEEEEEe
Confidence 399999999876542 22334 55566655533223 24555666544 234577777664
No 393
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=45.80 E-value=2.1e+02 Score=25.85 Aligned_cols=130 Identities=8% Similarity=0.006 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHh--cc-
Q psy4165 31 TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVN--DR- 107 (242)
Q Consensus 31 ~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~--~R- 107 (242)
..+...+.... . --+|+||....... + .. .-.-+..++.........++|+-+|.....+...+. +.
T Consensus 243 ~~l~~~L~~~~--~-~DlVLIDTaGr~~~-----~-~~-~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~ 312 (388)
T PRK12723 243 KDLKEEITQSK--D-FDLVLVDTIGKSPK-----D-FM-KLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPF 312 (388)
T ss_pred HHHHHHHHHhC--C-CCEEEEcCCCCCcc-----C-HH-HHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCC
Confidence 34444444442 2 47999999876521 1 11 112223343333322346788888888888875554 11
Q ss_pred -cccEEEeCCCCHHHHHHHHHHHHh--ccccchhhhcccc-cccCCCChhHhHHHHHHhCCCCCHHHHHHHH
Q psy4165 108 -LDEMVEFPLPTLNERERLVRLYFD--KFVLQPAAQGKRR-LKVAPFDYTSLCSKIAHVTEGLSGREIAKLG 175 (242)
Q Consensus 108 -fd~~i~~~~P~~~~R~~Il~~~l~--~~~~~~~~~~~~~-~~~~~~d~~~~l~~la~~t~g~s~adi~~lv 175 (242)
++ .+-|...|...+.-.+-.... ++++.+-..|.+. -++...+ -..+++..-||+-++=...+
T Consensus 313 ~~~-~~I~TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~----~~~~~~~l~g~~~~~~~~~~ 379 (388)
T PRK12723 313 SYK-TVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAE----PLTFIKKINGYRISDDAEFI 379 (388)
T ss_pred CCC-EEEEEeccCCCcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCC----HHHHHHHhcCCCccchHHHH
Confidence 33 555556666555544444332 3444443333211 1122333 37788888888876644444
No 394
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=45.69 E-value=99 Score=26.07 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=32.8
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.+|++||--+-+ ....+..+..+|..+.. . +..||.+|..++.+
T Consensus 156 la~al~~~-p~lllLDEPt~~L--------D~~~~~~l~~~l~~~~~-~-~~tiiivsH~~~~~ 208 (280)
T PRK13649 156 IAGILAME-PKILVLDEPTAGL--------DPKGRKELMTLFKKLHQ-S-GMTIVLVTHLMDDV 208 (280)
T ss_pred HHHHHHcC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHH
Confidence 44455455 9999999975443 23455666667666632 2 34677777776543
No 395
>PF04465 DUF499: Protein of unknown function (DUF499); InterPro: IPR007555 This is a family of uncharacterised hypothetical prokaryotic proteins.
Probab=45.48 E-value=1e+02 Score=31.55 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeccccccccc--CCCccchHHHHHHHHHHHHh
Q psy4165 30 VTAIHKVFDWASSSRKGLVLFIDEADAFLRKR--SSETISESLRATLNAFLYRT 81 (242)
Q Consensus 30 e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r--~~~~~~~~~~~~l~~lL~~l 81 (242)
...|+++|. .. ||+|+|||+=..+.+- ......+.....+..|++.|
T Consensus 89 ~~~L~eLl~----~~-P~LILiDEl~~Y~~~l~~~~~~~~~~~a~q~~~Flq~L 137 (1035)
T PF04465_consen 89 KDVLRELLG----GR-PVLILIDELVAYARQLHDSKDEPGGNLADQTFAFLQNL 137 (1035)
T ss_pred HHHHHHHhC----CC-CEEEEeecHHHHHHHHhccCCCCCCcHHHHHHHHHHHH
Confidence 345666664 24 9999999998888732 22112222344445555555
No 396
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=45.44 E-value=62 Score=25.90 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=35.3
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
.|-... |.|+++||--+-+ ....+..+..+|.++.. . +..+|.+|.+++.+. .-+|+.+.+
T Consensus 149 ral~~~-p~llllDEPt~~L--------D~~~~~~~~~~l~~~~~-~-~~tiiivtH~~~~~~----~~~d~i~~l 209 (214)
T cd03292 149 RAIVNS-PTILIADEPTGNL--------DPDTTWEIMNLLKKINK-A-GTTVVVATHAKELVD----TTRHRVIAL 209 (214)
T ss_pred HHHHcC-CCEEEEeCCCCcC--------CHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHH----HhCCEEEEE
Confidence 333344 9999999965443 33455566667766632 2 346777777765443 223555444
No 397
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=45.39 E-value=50 Score=21.75 Aligned_cols=31 Identities=13% Similarity=-0.027 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 170 EIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 170 di~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
-|+.++++|..-+...++..+|.+|+..|++
T Consensus 36 rlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 36 RLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp HHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 4667777666666677888999999998874
No 398
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.33 E-value=97 Score=25.44 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=32.4
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|--.. |.++++||--+=+ ....+..+..+|..+....+ ..||.+|.+++.+
T Consensus 146 laral~~~-p~llllDEPt~~L--------D~~~~~~l~~~L~~~~~~~g-~tvii~sH~~~~~ 199 (242)
T cd03295 146 VARALAAD-PPLLLMDEPFGAL--------DPITRDQLQEEFKRLQQELG-KTIVFVTHDIDEA 199 (242)
T ss_pred HHHHHhcC-CCEEEecCCcccC--------CHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHH
Confidence 44444444 9999999964432 23345566667766643223 4677777776544
No 399
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=45.20 E-value=59 Score=25.44 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=30.8
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
.|-... |.|+++||--+-+ ....+..+.++|..+.. . +..+|.+|.+++.+
T Consensus 117 ~al~~~-p~llllDEP~~~L--------D~~~~~~l~~~l~~~~~-~-~~tiii~sh~~~~~ 167 (182)
T cd03215 117 RWLARD-PRVLILDEPTRGV--------DVGAKAEIYRLIRELAD-A-GKAVLLISSELDEL 167 (182)
T ss_pred HHHccC-CCEEEECCCCcCC--------CHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHH
Confidence 333344 9999999965433 33455666677766632 2 34677777766543
No 400
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=45.17 E-value=1.1e+02 Score=24.83 Aligned_cols=54 Identities=15% Similarity=0.008 Sum_probs=31.7
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.|+++||--+-+ ....+..+..+|.++.... +..||.+|.+++.+
T Consensus 136 laral~~~-p~vllLDEPt~~L--------D~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~ 189 (230)
T TIGR02770 136 IALALLLE-PPFLIADEPTTDL--------DVVNQARVLKLLRELRQLF-GTGILLITHDLGVV 189 (230)
T ss_pred HHHHHhcC-CCEEEEcCCcccc--------CHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH
Confidence 34444445 9999999965433 2334556666666653322 33666777766544
No 401
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=44.83 E-value=1.5e+02 Score=23.42 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=28.9
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcc
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQ 98 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~ 98 (242)
.|-... |.|+++||--+-+ ....+..+..+|.++... + ..+|.+|..+.
T Consensus 124 ral~~~-p~illlDEP~~~L--------D~~~~~~l~~~l~~~~~~-~-~tiii~sh~~~ 172 (194)
T cd03213 124 LELVSN-PSLLFLDEPTSGL--------DSSSALQVMSLLRRLADT-G-RTIICSIHQPS 172 (194)
T ss_pred HHHHcC-CCEEEEeCCCcCC--------CHHHHHHHHHHHHHHHhC-C-CEEEEEecCch
Confidence 333344 9999999976543 233455666666666332 3 35666666543
No 402
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.74 E-value=1.5e+02 Score=23.29 Aligned_cols=62 Identities=16% Similarity=0.317 Sum_probs=34.9
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
.|-... |.++++||-.+-+ ....+..+.++|..+.. . +..+|.+|..++. .+...+|+.+.+
T Consensus 121 ~al~~~-p~vlllDEP~~~L--------D~~~~~~l~~~l~~~~~-~-~~tiiivtH~~~~---~~~~~~d~i~~l 182 (192)
T cd03232 121 VELAAK-PSILFLDEPTSGL--------DSQAAYNIVRFLKKLAD-S-GQAILCTIHQPSA---SIFEKFDRLLLL 182 (192)
T ss_pred HHHhcC-CcEEEEeCCCcCC--------CHHHHHHHHHHHHHHHH-c-CCEEEEEEcCChH---HHHhhCCEEEEE
Confidence 333344 9999999976543 23345556666666643 2 3456667766542 122345655554
No 403
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=44.63 E-value=1e+02 Score=25.87 Aligned_cols=58 Identities=10% Similarity=0.125 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCc
Q psy4165 28 SGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTP 97 (242)
Q Consensus 28 ~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~ 97 (242)
-+|+.=.++++.+. .. |.+.++||.|+=+ .=..-+++...++.+......+++| |.+.
T Consensus 147 GGEkKR~EilQ~~~-le-Pkl~ILDE~DSGL--------DIdalk~V~~~i~~lr~~~~~~liI--THy~ 204 (251)
T COG0396 147 GGEKKRNEILQLLL-LE-PKLAILDEPDSGL--------DIDALKIVAEGINALREEGRGVLII--THYQ 204 (251)
T ss_pred cchHHHHHHHHHHh-cC-CCEEEecCCCcCc--------cHHHHHHHHHHHHHHhcCCCeEEEE--ecHH
Confidence 34566667777666 55 9999999999743 2223456666666665554444444 5543
No 404
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=44.54 E-value=2.3e+02 Score=25.92 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=18.5
Q ss_pred HHHHHHHh---CCCcEEEEEecccccccc
Q psy4165 35 KVFDWASS---SRKGLVLFIDEADAFLRK 60 (242)
Q Consensus 35 ~~f~~A~~---~~~p~Il~iDeiD~l~~~ 60 (242)
.+++.|+. ..+.++||||||..+...
T Consensus 243 ~~ie~Ae~~~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 243 MVIEKAKRLVEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHHHHHHHHHHcCCCEEEEEEChHHHHHH
Confidence 44555554 234799999999999754
No 405
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=44.16 E-value=97 Score=25.73 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=33.3
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|-... |.|+++||--+-+ .......+..+|..+.... +..+|.+|.+++.+.
T Consensus 162 laral~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~~~-~~tii~isH~~~~~~ 216 (258)
T PRK11701 162 IARNLVTH-PRLVFMDEPTGGL--------DVSVQARLLDLLRGLVREL-GLAVVIVTHDLAVAR 216 (258)
T ss_pred HHHHHhcC-CCEEEEcCCcccC--------CHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHH
Confidence 44444445 9999999975543 2334555566666553322 347777787776554
No 406
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=44.11 E-value=69 Score=25.73 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=31.7
Q ss_pred HHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 38 DWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 38 ~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
..|-... |.||++||--+-+ ....+..+.++|..+.. . +..+|.+|.+++.+
T Consensus 148 aral~~~-p~illlDEPt~~L--------D~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~ 199 (218)
T cd03266 148 ARALVHD-PPVLLLDEPTTGL--------DVMATRALREFIRQLRA-L-GKCILFSTHIMQEV 199 (218)
T ss_pred HHHHhcC-CCEEEEcCCCcCC--------CHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHH
Confidence 3344344 9999999965543 33455666667766632 2 34677777776544
No 407
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=44.10 E-value=78 Score=24.85 Aligned_cols=51 Identities=25% Similarity=0.267 Sum_probs=29.7
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQ 98 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~ 98 (242)
+..|-... |.+|++||--+-+ ....+..+..+|.++... +..+|.+|..++
T Consensus 138 laral~~~-p~llllDEPt~~L--------D~~~~~~~~~~l~~~~~~--~~tili~sH~~~ 188 (190)
T TIGR01166 138 IAGAVAMR-PDVLLLDEPTAGL--------DPAGREQMLAILRRLRAE--GMTVVISTHDVD 188 (190)
T ss_pred HHHHHhcC-CCEEEEcCCcccC--------CHHHHHHHHHHHHHHHHc--CCEEEEEeeccc
Confidence 33444344 9999999964432 334555666677666332 346666666554
No 408
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=44.05 E-value=1.4e+02 Score=24.48 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHh----
Q psy4165 30 VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVN---- 105 (242)
Q Consensus 30 e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~---- 105 (242)
+..+..+.+.+.... |.++++||+-.+... .. .....+.+.+++..+... + ..+|.|++... ++....
T Consensus 103 ~~~l~~il~~~~~~~-~~~lVIDe~t~~l~~--~~--d~~~~~~l~~~l~~l~~~-g-~tvi~t~~~~~-~~~~~~~~~~ 174 (230)
T PRK08533 103 RKFLKKLMNTRRFYE-KDVIIIDSLSSLISN--DA--SEVAVNDLMAFFKRISSL-N-KVIILTANPKE-LDESVLTILR 174 (230)
T ss_pred HHHHHHHHHHHHhcC-CCEEEEECccHHhcC--Cc--chHHHHHHHHHHHHHHhC-C-CEEEEEecccc-cccccceeEE
Confidence 455666777766555 899999999887522 11 112233445566666333 3 35666666432 222111
Q ss_pred cccccEEEeCCC
Q psy4165 106 DRLDEMVEFPLP 117 (242)
Q Consensus 106 ~Rfd~~i~~~~P 117 (242)
--.|-.|.+...
T Consensus 175 ~~~DgvI~L~~~ 186 (230)
T PRK08533 175 TAATMLIRLEVK 186 (230)
T ss_pred EeeeEEEEEEEe
Confidence 234666666544
No 409
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=43.90 E-value=70 Score=25.75 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=32.7
Q ss_pred HHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 38 DWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 38 ~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
..|-... |.++++||--+-+ .......+..+|..+.. + ..+|.+|++++.+.
T Consensus 145 a~al~~~-p~llllDEP~~~L--------D~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~ 196 (220)
T cd03263 145 AIALIGG-PSVLLLDEPTSGL--------DPASRRAIWDLILEVRK--G-RSIILTTHSMDEAE 196 (220)
T ss_pred HHHHhcC-CCEEEECCCCCCC--------CHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHH
Confidence 3333344 9999999976543 23345566666666632 2 57788888776554
No 410
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=43.89 E-value=79 Score=24.60 Aligned_cols=61 Identities=11% Similarity=0.199 Sum_probs=36.2
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
+..|-... |.++++||--+-+ ....+..+.++|..+. .+ ..+|.+|+.++.++ .+|+.+.+
T Consensus 109 laral~~~-p~~lllDEP~~~L--------D~~~~~~l~~~l~~~~--~~-~tii~~sh~~~~~~-----~~d~~~~l 169 (178)
T cd03247 109 LARILLQD-APIVLLDEPTVGL--------DPITERQLLSLIFEVL--KD-KTLIWITHHLTGIE-----HMDKILFL 169 (178)
T ss_pred HHHHHhcC-CCEEEEECCcccC--------CHHHHHHHHHHHHHHc--CC-CEEEEEecCHHHHH-----hCCEEEEE
Confidence 44444445 9999999975543 2334556666666663 23 46667777766542 24555554
No 411
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=43.67 E-value=71 Score=25.57 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=35.1
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
.|-... |.|+++||--+-+ ....+..+..+|.++.. . +..+|.+|.+++.+. .-+|+.+.+
T Consensus 150 ~al~~~-p~lllLDEPt~~L--------D~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~----~~~d~i~~l 210 (214)
T TIGR02673 150 RAIVNS-PPLLLADEPTGNL--------DPDLSERILDLLKRLNK-R-GTTVIVATHDLSLVD----RVAHRVIIL 210 (214)
T ss_pred HHHhCC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHH----HhcCEEEEe
Confidence 333344 9999999965433 33455666677766632 2 336677777665443 224555544
No 412
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=43.46 E-value=69 Score=25.66 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=34.6
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
.|-... |.|+++||--+-+ ....+..+.++|..+.. . +..+|.+|.+++.+. .-.|+.+.+
T Consensus 145 ~al~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~-~-~~tvi~~sH~~~~~~----~~~d~i~~l 205 (213)
T cd03235 145 RALVQD-PDLLLLDEPFAGV--------DPKTQEDIYELLRELRR-E-GMTILVVTHDLGLVL----EYFDRVLLL 205 (213)
T ss_pred HHHHcC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHH----HhcCEEEEE
Confidence 333344 9999999964332 33455566666666633 2 346777777665433 223555544
No 413
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=43.33 E-value=1.1e+02 Score=28.21 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=34.9
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccH
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDW 102 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~ 102 (242)
+..|-... |-||++||--+=+ ....+..+.++|.++... ++..||.+|.+++.+..
T Consensus 412 la~al~~~-p~lllLDEPt~gL--------D~~~~~~l~~~L~~l~~~-~~~tviivsHd~~~~~~ 467 (490)
T PRK10938 412 IVRALVKH-PTLLILDEPLQGL--------DPLNRQLVRRFVDVLISE-GETQLLFVSHHAEDAPA 467 (490)
T ss_pred HHHHHhcC-CCEEEEcCccccC--------CHHHHHHHHHHHHHHHhc-CCcEEEEEecchhhhhh
Confidence 44455455 9999999954322 344566677777776432 33456777777776653
No 414
>PF13175 AAA_15: AAA ATPase domain
Probab=43.29 E-value=85 Score=27.73 Aligned_cols=42 Identities=19% Similarity=0.474 Sum_probs=30.7
Q ss_pred EEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcc
Q psy4165 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQ 98 (242)
Q Consensus 48 Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~ 98 (242)
||+|||-+..+ |...++.+..+|..+-. ..++=||.||..|.
T Consensus 372 illidEPE~~L--------Hp~~q~~~~~~L~~~~~-~~~~QiiitTHSp~ 413 (415)
T PF13175_consen 372 ILLIDEPELHL--------HPQAQRKFIDFLKKLSK-NNNIQIIITTHSPF 413 (415)
T ss_pred EEEEeCccccC--------CHHHHHHHHHHHHHHhc-cCCCEEEEECCChh
Confidence 99999999876 55566666666666633 33558889998875
No 415
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=43.11 E-value=97 Score=24.53 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=31.1
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
.|--.. |.+|++||--+=+ ....+..+..+|..+.. .+ ..+|.+|+.+..+.
T Consensus 140 ~al~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~-~~-~tii~~sH~~~~~~ 191 (198)
T TIGR01189 140 RLWLSR-APLWILDEPTTAL--------DKAGVALLAGLLRAHLA-RG-GIVLLTTHQDLGLV 191 (198)
T ss_pred HHHhcC-CCEEEEeCCCcCC--------CHHHHHHHHHHHHHHHh-CC-CEEEEEEccccccc
Confidence 333344 9999999965543 23355566667666532 22 36777777765443
No 416
>PF14350 Beta_protein: Beta protein
Probab=42.96 E-value=2.2e+02 Score=24.95 Aligned_cols=83 Identities=11% Similarity=0.049 Sum_probs=49.2
Q ss_pred EEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhcc-CCCCeEEEE
Q psy4165 14 YAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGE-QSDKFMLVL 92 (242)
Q Consensus 14 ~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~-~~~~v~vI~ 92 (242)
.+.++..++.+ .+....+..+.....-...-+.|+||-=+..... .......+..++..+.. ....-++|+
T Consensus 125 aiRl~~~~~~~--~~~~~~i~~i~~~l~~~~~~~~lilD~~~i~~~~------~~~~~~~~~~~l~~l~~~~~~~~v~v~ 196 (347)
T PF14350_consen 125 AIRLRPDDLDD--DDFPSEISRILAALGLSPNEVDLILDLGDIRDSD------ESAVAEAIIRALNSLPSLFPWRSVIVA 196 (347)
T ss_pred EEEeecccccc--hhHHHHHHHHHHHcCCCccceEEEEECCccCCcc------hHHHHHHHHHHHHhhhhccCCeEEEEE
Confidence 45555555533 2445677777777662111488888875554221 12234445555666643 555678999
Q ss_pred ecCCcccccHHH
Q psy4165 93 ASNTPQQFDWAV 104 (242)
Q Consensus 93 tTn~~~~ld~al 104 (242)
+|+-|.++....
T Consensus 197 ~tSfP~s~~~~~ 208 (347)
T PF14350_consen 197 GTSFPSSISGIP 208 (347)
T ss_pred ecccCCcccccc
Confidence 999999877554
No 417
>KOG1970|consensus
Probab=42.95 E-value=3.1e+02 Score=26.26 Aligned_cols=158 Identities=13% Similarity=0.100 Sum_probs=79.6
Q ss_pred hHHHHHHhcCCcEEEEec-------CCccc-------ccchHHHHHHHHHHHHHhC-----------CCcEEEEEecccc
Q psy4165 2 FAKKLAHHSGMDYAIMTG-------GDVAP-------MGSSGVTAIHKVFDWASSS-----------RKGLVLFIDEADA 56 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~-------~~l~~-------~~g~~e~~l~~~f~~A~~~-----------~~p~Il~iDeiD~ 56 (242)
..+-+|+++|..++.-+. ..+-+ .++.-...++.....+.++ ..|.+||+||+=.
T Consensus 126 tvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn 205 (634)
T KOG1970|consen 126 TVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPN 205 (634)
T ss_pred HHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccch
Confidence 468899999998887652 11111 1111122233333444221 1367999999977
Q ss_pred cccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEec-CCcccccHHHh--------cccccEEEeCCCCHHHHHHHHH
Q psy4165 57 FLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLAS-NTPQQFDWAVN--------DRLDEMVEFPLPTLNERERLVR 127 (242)
Q Consensus 57 l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tT-n~~~~ld~al~--------~Rfd~~i~~~~P~~~~R~~Il~ 127 (242)
.+..- .....+.++. ++.... .-++++|.|- +.++..++--+ -|.+ .|.|.+-...--+..|+
T Consensus 206 ~~~~d----~~~~f~evL~-~y~s~g--~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ 277 (634)
T KOG1970|consen 206 QFYRD----DSETFREVLR-LYVSIG--RCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLK 277 (634)
T ss_pred hhhhh----hHHHHHHHHH-HHHhcC--CCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHH
Confidence 76531 1222333333 222222 2233333332 22233332222 4665 78888878777777777
Q ss_pred HHHhccccchhhhcccccccCC--CChhHhHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy4165 128 LYFDKFVLQPAAQGKRRLKVAP--FDYTSLCSKIAHVTEGLSGREIAKLGVAWQAS 181 (242)
Q Consensus 128 ~~l~~~~~~~~~~~~~~~~~~~--~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~ 181 (242)
...... ...... +.....++.++.. +++||+.+++..+.-
T Consensus 278 ric~~e----------~~~~s~~k~~~~~~v~~i~~~----s~GDIRsAInsLQls 319 (634)
T KOG1970|consen 278 RICRIE----------ANKKSGIKVPDTAEVELICQG----SGGDIRSAINSLQLS 319 (634)
T ss_pred HHHHHh----------cccccCCcCchhHHHHHHHHh----cCccHHHHHhHhhhh
Confidence 666542 111221 2222233444444 567999999855544
No 418
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=42.93 E-value=1.3e+02 Score=24.24 Aligned_cols=48 Identities=17% Similarity=-0.024 Sum_probs=27.1
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+|+++++||+..=. +..........++..+... +..+|.+|...+.++
T Consensus 108 ~~~lvllDE~~~gt-------~~~~~~~l~~~il~~l~~~--~~~~i~~TH~~~l~~ 155 (204)
T cd03282 108 GDSLVLIDELGRGT-------SSADGFAISLAILECLIKK--ESTVFFATHFRDIAA 155 (204)
T ss_pred CCcEEEeccccCCC-------CHHHHHHHHHHHHHHHHhc--CCEEEEECChHHHHH
Confidence 38999999974421 0111222334455555333 447777888776655
No 419
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=42.90 E-value=1.4e+02 Score=24.02 Aligned_cols=63 Identities=11% Similarity=0.189 Sum_probs=36.0
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
+..|-... |.|+++||--+-+ ....+..+..+|..+.... +..+|.+|.+++.+. .+|+.+.+
T Consensus 152 laral~~~-p~illlDEPt~~L--------D~~~~~~l~~~l~~~~~~~-~~tii~~tH~~~~~~-----~~d~v~~l 214 (221)
T TIGR02211 152 IARALVNQ-PSLVLADEPTGNL--------DNNNAKIIFDLMLELNREL-NTSFLVVTHDLELAK-----KLDRVLEM 214 (221)
T ss_pred HHHHHhCC-CCEEEEeCCCCcC--------CHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHh-----hcCEEEEE
Confidence 44444444 9999999964432 3344556666666663222 246777777765332 24655555
No 420
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=42.83 E-value=91 Score=26.94 Aligned_cols=54 Identities=11% Similarity=0.012 Sum_probs=32.9
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|-... |.||++||--+-+ .......+..+|.++.. . +..||.+|...+.+.
T Consensus 176 lA~aL~~~-P~lLlLDEPt~~L--------D~~~~~~l~~~l~~l~~-~-g~tiiivtHd~~~~~ 229 (305)
T PRK13651 176 LAGILAME-PDFLVFDEPTAGL--------DPQGVKEILEIFDNLNK-Q-GKTIILVTHDLDNVL 229 (305)
T ss_pred HHHHHHhC-CCEEEEeCCCCCC--------CHHHHHHHHHHHHHHHH-C-CCEEEEEeeCHHHHH
Confidence 44555455 9999999976543 23345566666666642 2 346666777665443
No 421
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.82 E-value=1.5e+02 Score=24.08 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=32.8
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-..+ |.++++||-..=+ ....+..+.++|..+.... +..+|.+|.++..+
T Consensus 141 laral~~~-p~llllDEP~~gL--------D~~~~~~l~~~l~~~~~~~-~~tiii~sh~~~~~ 194 (232)
T cd03300 141 IARALVNE-PKVLLLDEPLGAL--------DLKLRKDMQLELKRLQKEL-GITFVFVTHDQEEA 194 (232)
T ss_pred HHHHHhcC-CCEEEEcCCcccC--------CHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHH
Confidence 44444445 9999999976543 3445566666766664322 33666667766554
No 422
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.69 E-value=78 Score=23.95 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=36.7
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
+..+-... |.++++||...=+ .......+..++..+... + ..+|.+|++++.++.. +|+.+.+
T Consensus 91 l~~~l~~~-~~i~ilDEp~~~l--------D~~~~~~l~~~l~~~~~~-~-~tii~~sh~~~~~~~~----~d~i~~l 153 (157)
T cd00267 91 LARALLLN-PDLLLLDEPTSGL--------DPASRERLLELLRELAEE-G-RTVIIVTHDPELAELA----ADRVIVL 153 (157)
T ss_pred HHHHHhcC-CCEEEEeCCCcCC--------CHHHHHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHh----CCEEEEE
Confidence 44444444 8999999976543 223445555666555322 2 4667778777665543 3555554
No 423
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=42.63 E-value=1.4e+02 Score=24.35 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecccccc
Q psy4165 31 TAIHKVFDWASSSRKGLVLFIDEADAFL 58 (242)
Q Consensus 31 ~~l~~~f~~A~~~~~p~Il~iDeiD~l~ 58 (242)
..+..+-+...+.. |.+|+||++-.+.
T Consensus 107 ~ll~~l~~~i~~~~-~~~iviDs~t~~~ 133 (234)
T PRK06067 107 KLLELIIEFIKSKR-EDVIIIDSLTIFA 133 (234)
T ss_pred HHHHHHHHHHHhcC-CCEEEEecHHHHH
Confidence 34444444555445 8999999999774
No 424
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=42.63 E-value=1.4e+02 Score=24.38 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=32.6
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|-... |.|+++||--+-+ ....+..+.++|..+.... +..||.+|..++.+.
T Consensus 156 la~al~~~-p~lllLDEPt~~L--------D~~~~~~l~~~l~~~~~~~-g~tvii~sH~~~~~~ 210 (233)
T PRK11629 156 IARALVNN-PRLVLADEPTGNL--------DARNADSIFQLLGELNRLQ-GTAFLVVTHDLQLAK 210 (233)
T ss_pred HHHHHhcC-CCEEEEeCCCCCC--------CHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHH
Confidence 44444455 9999999965443 2334555666666663222 346777777765443
No 425
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=42.55 E-value=1.4e+02 Score=24.13 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=34.7
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
+..|-... |.++++||--.-+ ....+..+..+|..+.... +..+|.+|.+.+ + ....|+.+.+
T Consensus 152 laral~~~-p~illlDEP~~~L--------D~~~~~~l~~~l~~~~~~~-~~tii~~sh~~~-~----~~~~d~v~~l 214 (220)
T TIGR02982 152 IARALVHR-PKLVLADEPTAAL--------DSKSGRDVVELMQKLAREQ-GCTILIVTHDNR-I----LDVADRIVHM 214 (220)
T ss_pred HHHHHhcC-CCEEEEeCCCCcC--------CHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-H----HhhCCEEEEE
Confidence 44444444 9999999976543 2334555566666553222 346666666653 2 1335555554
No 426
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=42.54 E-value=80 Score=26.92 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHH-----h---
Q psy4165 34 HKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAV-----N--- 105 (242)
Q Consensus 34 ~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al-----~--- 105 (242)
..++..++.+. |.||++||+- ....+..++..+. .+..+|+||..+ .+.... .
T Consensus 184 ~~~~~~i~~~~-P~villDE~~--------------~~e~~~~l~~~~~---~G~~vI~ttH~~-~~~~~~~r~~~~~l~ 244 (270)
T TIGR02858 184 EGMMMLIRSMS-PDVIVVDEIG--------------REEDVEALLEALH---AGVSIIATAHGR-DVEDLYKRPVFKELI 244 (270)
T ss_pred HHHHHHHHhCC-CCEEEEeCCC--------------cHHHHHHHHHHHh---CCCEEEEEechh-HHHHHHhChHHHHHH
Confidence 34666777676 9999999951 1122344444442 345788888753 333332 1
Q ss_pred --cccccEEEeC
Q psy4165 106 --DRLDEMVEFP 115 (242)
Q Consensus 106 --~Rfd~~i~~~ 115 (242)
+-|++.+.+.
T Consensus 245 ~~~~~~r~i~L~ 256 (270)
T TIGR02858 245 ENEAFERYVVLS 256 (270)
T ss_pred hcCceEEEEEEe
Confidence 3467666664
No 427
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=42.53 E-value=1.2e+02 Score=24.21 Aligned_cols=63 Identities=14% Similarity=0.257 Sum_probs=37.3
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
+..|-... |.|+++||--+-+ ....+..+..+|.++.... +..||.+|..++.+. .+|+.+.+
T Consensus 151 la~al~~~-p~lllLDEP~~~L--------D~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~-----~~d~v~~l 213 (218)
T cd03255 151 IARALAND-PKIILADEPTGNL--------DSETGKEVMELLRELNKEA-GTTIVVVTHDPELAE-----YADRIIEL 213 (218)
T ss_pred HHHHHccC-CCEEEEcCCcccC--------CHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHh-----hhcEEEEe
Confidence 44444445 9999999965433 3345566677777664322 346777777765432 34555554
No 428
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=42.51 E-value=28 Score=31.04 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=26.2
Q ss_pred EEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHh
Q psy4165 47 LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVN 105 (242)
Q Consensus 47 ~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~ 105 (242)
-+|||||+|++--. .+ ..+..=+..-.... +-.+..|+..+..++..+.
T Consensus 204 D~liIDEVDAFP~~-~d--------~~L~~Av~~ark~~-g~~IylTATp~k~l~r~~~ 252 (441)
T COG4098 204 DLLIIDEVDAFPFS-DD--------QSLQYAVKKARKKE-GATIYLTATPTKKLERKIL 252 (441)
T ss_pred cEEEEecccccccc-CC--------HHHHHHHHHhhccc-CceEEEecCChHHHHHHhh
Confidence 58999999998321 11 11111111111233 3456666666777777666
No 429
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=42.43 E-value=1.2e+02 Score=25.14 Aligned_cols=55 Identities=15% Similarity=0.057 Sum_probs=33.3
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|-... |.||++||-.+-+ .......+..+|..+.... +..||.+|.+++.+.
T Consensus 163 laral~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~~~-g~tvii~tH~~~~~~ 217 (262)
T PRK09984 163 IARALMQQ-AKVILADEPIASL--------DPESARIVMDTLRDINQND-GITVVVTLHQVDYAL 217 (262)
T ss_pred HHHHHhcC-CCEEEecCccccC--------CHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHH
Confidence 44444455 9999999976543 2334556666776663222 346777777765443
No 430
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=42.39 E-value=96 Score=25.09 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=31.2
Q ss_pred HHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 38 DWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 38 ~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
..|-... |.++++||--+-+ ....+..+..+|.++... ..||.+|.+++.+
T Consensus 153 a~al~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~~---~tii~~sH~~~~~ 203 (227)
T cd03260 153 ARALANE-PEVLLLDEPTSAL--------DPISTAKIEELIAELKKE---YTIVIVTHNMQQA 203 (227)
T ss_pred HHHHhcC-CCEEEEeCCCccC--------CHHHHHHHHHHHHHHhhC---cEEEEEeccHHHH
Confidence 3344344 9999999965432 334555666777666322 4677777776543
No 431
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=42.34 E-value=46 Score=29.08 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=11.9
Q ss_pred cEEEEEeccccccc
Q psy4165 46 GLVLFIDEADAFLR 59 (242)
Q Consensus 46 p~Il~iDeiD~l~~ 59 (242)
.++|+|||+|.+..
T Consensus 125 ~~~iViDE~h~~~~ 138 (358)
T TIGR01587 125 NSLLIFDEVHFYDE 138 (358)
T ss_pred CCEEEEeCCCCCCH
Confidence 47999999999864
No 432
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=42.24 E-value=75 Score=26.17 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=30.7
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
.|-... |.||++||--+-+ ....+..+..+|..+... +..+|.+|.+++.+
T Consensus 157 ~al~~~-p~lllLDEPt~~L--------D~~~~~~l~~~l~~~~~~--~~tvi~~tH~~~~~ 207 (250)
T PRK11264 157 RALAMR-PEVILFDEPTSAL--------DPELVGEVLNTIRQLAQE--KRTMVIVTHEMSFA 207 (250)
T ss_pred HHHhcC-CCEEEEeCCCccC--------CHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH
Confidence 333344 9999999975543 233455666666666432 33566677776544
No 433
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=41.78 E-value=1.2e+02 Score=25.74 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=31.9
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.+|++||--+=+ ....+..+..+|..+.. . +..||.+|..++.+
T Consensus 156 laral~~~-p~lLlLDEPt~gL--------D~~~~~~l~~~l~~l~~-~-g~tvlivsH~~~~~ 208 (287)
T PRK13641 156 IAGVMAYE-PEILCLDEPAAGL--------DPEGRKEMMQLFKDYQK-A-GHTVILVTHNMDDV 208 (287)
T ss_pred HHHHHHcC-CCEEEEECCCCCC--------CHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHH
Confidence 44555455 9999999954432 23345566667766632 2 34666677765543
No 434
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=41.75 E-value=81 Score=25.12 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=31.2
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
.|-... |.++++||--+=+ ....+..+..+|.++.. . +..+|.+|++++.+.
T Consensus 139 ~al~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~ 190 (208)
T cd03268 139 LALLGN-PDLLILDEPTNGL--------DPDGIKELRELILSLRD-Q-GITVLISSHLLSEIQ 190 (208)
T ss_pred HHHhcC-CCEEEECCCcccC--------CHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHH
Confidence 333344 9999999965433 23345556666666643 2 346777787766443
No 435
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.52 E-value=79 Score=25.24 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=32.0
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.++++||--+-+ ....+..+.++|..+... +..+|.+|.+++.+
T Consensus 139 la~al~~~-p~~lllDEP~~~L--------D~~~~~~~~~~l~~~~~~--~~tii~~sH~~~~~ 191 (210)
T cd03269 139 FIAAVIHD-PELLILDEPFSGL--------DPVNVELLKDVIRELARA--GKTVILSTHQMELV 191 (210)
T ss_pred HHHHHhcC-CCEEEEeCCCcCC--------CHHHHHHHHHHHHHHHHC--CCEEEEECCCHHHH
Confidence 33444344 9999999965433 234555666666666432 34677778776543
No 436
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=41.51 E-value=57 Score=29.25 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=42.7
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc--------HHHhcccccEEEeCC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD--------WAVNDRLDEMVEFPL 116 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld--------~al~~Rfd~~i~~~~ 116 (242)
+|..+++||+.++..- ..+..+++... +.++.+|+.+.....|+ .++++-|..++.+..
T Consensus 243 ~~~~~~lDEl~sl~kl-----------~~l~~~l~~~R--k~G~~~ilg~Q~~aQL~~~YG~~~a~~i~~~~~tki~~r~ 309 (386)
T PF10412_consen 243 RRLWFVLDELPSLGKL-----------PSLDDALAEGR--KFGGCVILGLQSLAQLEEIYGEDDAQTILSNFGTKIIFRV 309 (386)
T ss_dssp --EEEEESEGGGS-B------------SSHHHHHHHTT--TTTEEEEEEES-HHHHHHHHHHHHHHHHHHT--EEEEEE-
T ss_pred CcEEEEEECcchhhhh-----------hhHHHHHHHHh--hcCCeEEEEeCCHHHHHHHHCHHHHHHHHhhhCcEEEEeC
Confidence 4899999999998531 12445555543 44566666666666554 345588999999999
Q ss_pred CCHHHHHHHHHHH
Q psy4165 117 PTLNERERLVRLY 129 (242)
Q Consensus 117 P~~~~R~~Il~~~ 129 (242)
++.+.++.+=+.+
T Consensus 310 ~d~eta~~~s~~l 322 (386)
T PF10412_consen 310 NDPETAEWLSKML 322 (386)
T ss_dssp --HHHHHHHHHHH
T ss_pred CCHHHHHHHHHhc
Confidence 9888887776644
No 437
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=41.31 E-value=93 Score=28.73 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=35.3
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHH-hhhcCCCccHHHHHHHHHHHHHhhhhhhhcc
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASA-YASEDGVLTEAMVMSKVEDSIRAHKMKVRWQ 213 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 213 (242)
++...+.-.+++.+|..++-+.+.+.. +-.-++.++.++++..++-++...++-.+++
T Consensus 384 ~~~~~~lg~~~~~RD~~AV~kt~SgllKLL~P~~~~~~ee~~~~l~~A~e~R~rVkeQl 442 (457)
T PF13337_consen 384 VDKYFKLGSNLSQRDTKAVKKTVSGLLKLLFPHGEFTKEELEECLRPALEMRRRVKEQL 442 (457)
T ss_pred HHhhEeeCCCcchhhHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556789999987765222111 1234467888898888887776544433333
No 438
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=41.11 E-value=98 Score=26.03 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=35.6
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeC
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFP 115 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~ 115 (242)
.|-... |.||++||--+=+ ....+..+..+|..+.. + ..+|.+|..++.+. .-+|+.+.+.
T Consensus 167 ral~~~-p~lllLDEPt~gL--------D~~~~~~l~~~l~~~~~--~-~tiiivtH~~~~~~----~~~d~i~~l~ 227 (269)
T PRK14259 167 RTIAIE-PEVILMDEPCSAL--------DPISTLKIEETMHELKK--N-FTIVIVTHNMQQAV----RVSDMTAFFN 227 (269)
T ss_pred HHHhcC-CCEEEEcCCCccC--------CHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHH----HhcCEEEEEe
Confidence 333344 9999999965432 23345566667766632 2 45677777655433 3345555554
No 439
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.85 E-value=1.6e+02 Score=24.96 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=32.2
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.||++||--.=+ ....+..+..+|.++... .+..||.+|...+.+
T Consensus 155 iAraL~~~-P~llllDEPt~gL--------D~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~ 208 (287)
T PRK13637 155 IAGVVAME-PKILILDEPTAGL--------DPKGRDEILNKIKELHKE-YNMTIILVSHSMEDV 208 (287)
T ss_pred HHHHHHcC-CCEEEEECCccCC--------CHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH
Confidence 44444455 9999999964433 233455566666666332 234677777776543
No 440
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.79 E-value=1.5e+02 Score=23.98 Aligned_cols=64 Identities=22% Similarity=0.339 Sum_probs=37.2
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeC
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFP 115 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~ 115 (242)
+..|-... |.|+|-||= .++-....-..+..+|-.+....+. .+|.-|. ||.+-.|+++.+.+.
T Consensus 157 iARAfa~~-P~vLfADEP--------TGNLD~~Tg~~iaDLlF~lnre~G~-TlVlVTH-----D~~LA~Rc~R~~r~~ 220 (228)
T COG4181 157 LARAFAGR-PDVLFADEP--------TGNLDRATGDKIADLLFALNRERGT-TLVLVTH-----DPQLAARCDRQLRLR 220 (228)
T ss_pred HHHHhcCC-CCEEeccCC--------CCCcchhHHHHHHHHHHHHhhhcCc-eEEEEeC-----CHHHHHhhhheeeee
Confidence 33444444 999999982 1121233444556666566433333 3444444 567889999888775
No 441
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.71 E-value=1.6e+02 Score=24.03 Aligned_cols=55 Identities=13% Similarity=0.133 Sum_probs=32.0
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|-... |.||++||--+-+ ....+..+..+|..+....+ ..+|.+|.+++.+.
T Consensus 155 la~al~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~~~~-~tii~~tH~~~~~~ 209 (241)
T cd03256 155 IARALMQQ-PKLILADEPVASL--------DPASSRQVMDLLKRINREEG-ITVIVSLHQVDLAR 209 (241)
T ss_pred HHHHHhcC-CCEEEEeCccccC--------CHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHH
Confidence 33444345 9999999965443 23345556666666532223 36677777765443
No 442
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=40.61 E-value=77 Score=25.98 Aligned_cols=72 Identities=18% Similarity=0.120 Sum_probs=35.1
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCC------------------cccccHHHhcc
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNT------------------PQQFDWAVNDR 107 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~------------------~~~ld~al~~R 107 (242)
|.|+++||+-.-... +..+....+-+.++| ..+|=|+-|.|- -+.+|..++.+
T Consensus 84 P~vvLVDELAHtN~p---gsr~~kR~qDVeeLL------~aGIdV~TTlNvqHlESlnd~V~~iTgv~vrEtVPD~~l~~ 154 (211)
T PF02702_consen 84 PQVVLVDELAHTNAP---GSRHKKRYQDVEELL------DAGIDVYTTLNVQHLESLNDVVEQITGVRVRETVPDSVLDR 154 (211)
T ss_dssp -SEEEES-TT-B--T---T-SSSBHHHHHHHHH------HTT-EEEEEEEGGGBGGGHHHHHHHHS----S-B-HHHHHT
T ss_pred CCEEEeCcccccCCC---CCCCcccHHhHHHHH------HCCCeEEEeeeHHHhhhhHHHHHHHhCCeeeeeCCHHHHhh
Confidence 999999997544322 122333455566776 344555555542 23466677777
Q ss_pred cccEEEeCCCCHHHHHHHH
Q psy4165 108 LDEMVEFPLPTLNERERLV 126 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il 126 (242)
-|...-+..|-.+-+.++-
T Consensus 155 Adev~lVDi~Pe~L~~RL~ 173 (211)
T PF02702_consen 155 ADEVELVDITPEELLERLK 173 (211)
T ss_dssp -SCEEEB---HHHHHHHHH
T ss_pred cCeEEEecCCHHHHHHHHH
Confidence 8888888877655554443
No 443
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=40.56 E-value=74 Score=26.42 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=32.4
Q ss_pred HHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 38 DWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 38 ~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
..|-... |.++++||--.=+ ....+..+.++|..+... +..+|.+|..++.+.
T Consensus 150 aral~~~-p~llllDEP~~~L--------D~~~~~~l~~~l~~l~~~--~~tiii~tH~~~~~~ 202 (255)
T PRK11231 150 AMVLAQD-TPVVLLDEPTTYL--------DINHQVELMRLMRELNTQ--GKTVVTVLHDLNQAS 202 (255)
T ss_pred HHHHhcC-CCEEEEcCCcccC--------CHHHHHHHHHHHHHHHHC--CCEEEEEECCHHHHH
Confidence 3344344 9999999965433 234556666777666322 346777777766544
No 444
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=40.33 E-value=42 Score=30.18 Aligned_cols=39 Identities=15% Similarity=0.316 Sum_probs=29.8
Q ss_pred hHHHHHHhcC--CcEEEEecCCcccc-cchHHHHHHHHHHHHH
Q psy4165 2 FAKKLAHHSG--MDYAIMTGGDVAPM-GSSGVTAIHKVFDWAS 41 (242)
Q Consensus 2 lA~aiA~e~~--~~~~~v~~~~l~~~-~g~~e~~l~~~f~~A~ 41 (242)
||-+||.++| .||..++++.+.+. +..+| .|.+.|..|.
T Consensus 81 lA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE-~L~qa~RraI 122 (450)
T COG1224 81 LAMGIARELGEDVPFVAISGSEIYSLEVKKTE-ALTQALRRAI 122 (450)
T ss_pred HHHHHHHHhCCCCCceeeccceeeeecccHHH-HHHHHHHHhh
Confidence 6889999998 69999999999874 34444 3666677765
No 445
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=40.32 E-value=1.7e+02 Score=23.73 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=31.6
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.++++||--.-+ ....+..+.++|..+.. . +..+|.+|.+++.+
T Consensus 124 laral~~~-p~llilDEP~~~L--------D~~~~~~l~~~l~~~~~-~-~~tvii~sH~~~~~ 176 (223)
T TIGR03771 124 VARALATR-PSVLLLDEPFTGL--------DMPTQELLTELFIELAG-A-GTAILMTTHDLAQA 176 (223)
T ss_pred HHHHHhcC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHH
Confidence 33444344 9999999965543 23345566666666632 2 34677777766543
No 446
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=39.89 E-value=2e+02 Score=24.12 Aligned_cols=72 Identities=13% Similarity=0.222 Sum_probs=47.9
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERL 125 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~I 125 (242)
+++|+|||+-. . ....+.+..|+. ....-++.+|..+.....||+.++.=.+..+-++ -+......|
T Consensus 99 ~~LiIlDD~~~---~-------~~k~~~l~~~~~--~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~-~s~~dl~~i 165 (241)
T PF04665_consen 99 RFLIILDDLGD---K-------KLKSKILRQFFN--NGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFN-NSKRDLENI 165 (241)
T ss_pred CeEEEEeCCCC---c-------hhhhHHHHHHHh--cccccceEEEEEeeecccCCHHHhhcceEEEEec-CcHHHHHHH
Confidence 79999999621 0 111234455542 2334458889999999999999987777777665 466776666
Q ss_pred HHHHH
Q psy4165 126 VRLYF 130 (242)
Q Consensus 126 l~~~l 130 (242)
++.+.
T Consensus 166 ~~~~~ 170 (241)
T PF04665_consen 166 YRNMN 170 (241)
T ss_pred HHhcc
Confidence 66653
No 447
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.69 E-value=93 Score=25.31 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=31.7
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.+|++||--.-+ .......+.++|..+.. +..+|.+|..++.+
T Consensus 148 la~aL~~~-p~llllDEP~~~L--------D~~~~~~l~~~l~~~~~---~~tiii~sh~~~~~ 199 (236)
T cd03253 148 IARAILKN-PPILLLDEATSAL--------DTHTEREIQAALRDVSK---GRTTIVIAHRLSTI 199 (236)
T ss_pred HHHHHhcC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHhcC---CCEEEEEcCCHHHH
Confidence 34444444 9999999965543 23345555666666533 34677777776655
No 448
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.63 E-value=1e+02 Score=23.82 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=35.7
Q ss_pred HHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 38 DWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 38 ~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
..|-... |.++++||--.-+ ....+..+..+|.++.. + ..+|.+|+.++.+. . .|+.+.+
T Consensus 108 a~al~~~-p~llllDEP~~gL--------D~~~~~~l~~~l~~~~~--~-~tii~~sh~~~~~~----~-~d~~~~l 167 (171)
T cd03228 108 ARALLRD-PPILILDEATSAL--------DPETEALILEALRALAK--G-KTVIVIAHRLSTIR----D-ADRIIVL 167 (171)
T ss_pred HHHHhcC-CCEEEEECCCcCC--------CHHHHHHHHHHHHHhcC--C-CEEEEEecCHHHHH----h-CCEEEEE
Confidence 3344344 9999999954432 23345566666666632 2 56777788776553 2 4555544
No 449
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=39.54 E-value=1.1e+02 Score=24.64 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=13.6
Q ss_pred CcEEEEEecccccccc
Q psy4165 45 KGLVLFIDEADAFLRK 60 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~ 60 (242)
++.+|+||-+-.+...
T Consensus 114 ~~~lvVIDsis~l~~~ 129 (226)
T cd01393 114 RVDLVVVDSVAALFRK 129 (226)
T ss_pred CeeEEEEcCcchhhhh
Confidence 3899999999998764
No 450
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=39.51 E-value=80 Score=25.72 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=32.0
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|-... |.+|++||--+-+ ....+..+..+|..+.. .+ ..+|.+|.+++.+.
T Consensus 154 la~al~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~-~~-~tii~vsH~~~~~~ 207 (236)
T cd03219 154 IARALATD-PKLLLLDEPAAGL--------NPEETEELAELIRELRE-RG-ITVLLVEHDMDVVM 207 (236)
T ss_pred HHHHHhcC-CCEEEEcCCcccC--------CHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHHH
Confidence 33444344 9999999964433 23345566667666643 33 36677777665443
No 451
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=39.48 E-value=81 Score=25.83 Aligned_cols=53 Identities=11% Similarity=0.090 Sum_probs=32.8
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|--.. |.||++||--+-+ ....+..+.++|..+.. + ..+|.+|+.++.+.
T Consensus 154 laral~~~-p~~lllDEPt~~L--------D~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~ 206 (242)
T TIGR03411 154 IGMLLMQD-PKLLLLDEPVAGM--------TDEETEKTAELLKSLAG--K-HSVVVVEHDMEFVR 206 (242)
T ss_pred HHHHHhcC-CCEEEecCCccCC--------CHHHHHHHHHHHHHHhc--C-CEEEEEECCHHHHH
Confidence 33444344 9999999975543 23445566667666632 2 47777888766544
No 452
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=39.37 E-value=1.1e+02 Score=25.45 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=15.8
Q ss_pred HHHhCCCcEEEEEecccccccc
Q psy4165 39 WASSSRKGLVLFIDEADAFLRK 60 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~ 60 (242)
.++... |.+|+||.+..+...
T Consensus 135 ~~~~~~-~~~vvID~l~~l~~~ 155 (271)
T cd01122 135 MAVSHG-IQHIIIDNLSIMVSD 155 (271)
T ss_pred HHhcCC-ceEEEECCHHHHhcc
Confidence 444455 899999999998654
No 453
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=39.36 E-value=91 Score=25.20 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=32.9
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|--.. |.|+++||--+=+ ....+..+.++|..+.. . +..+|.+|++++.+.
T Consensus 135 laral~~~-p~llllDEP~~~L--------D~~~~~~l~~~L~~~~~-~-~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 135 IAIALLNH-PKLLILDEPTNGL--------DPIGIQELRELIRSFPE-Q-GITVILSSHILSEVQ 188 (223)
T ss_pred HHHHHhcC-CCEEEECCCccCC--------CHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHH
Confidence 33444344 9999999965433 33455666777766632 2 346777787766543
No 454
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=39.18 E-value=1.8e+02 Score=24.38 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=32.2
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|-... |.||++||--.-+ ....+..+.++|..+.... +..+|.+|.+++.+.
T Consensus 162 laral~~~-p~lllLDEPt~~L--------D~~~~~~~~~~l~~~~~~~-~~tiiivsH~~~~i~ 216 (268)
T PRK10419 162 LARALAVE-PKLLILDEAVSNL--------DLVLQAGVIRLLKKLQQQF-GTACLFITHDLRLVE 216 (268)
T ss_pred HHHHHhcC-CCEEEEeCCCccc--------CHHHHHHHHHHHHHHHHHc-CcEEEEEECCHHHHH
Confidence 44555455 9999999965443 2334555566666653222 346677777765443
No 455
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=39.10 E-value=2.2e+02 Score=23.36 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccH
Q psy4165 31 TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDW 102 (242)
Q Consensus 31 ~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~ 102 (242)
+.+..+++.+ .+|++|+|||+-+= .+ ..+...+....+..+... .+..+|.+|...+-...
T Consensus 98 ~~~~~il~~~---~~~sLvLlDE~~~G----t~---~~dg~~la~ail~~L~~~-~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 98 SETANILRHA---TPDSLVILDELGRG----TS---THDGYAIAHAVLEYLVKK-VKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHhC---CCCeEEEEecccCC----CC---chHHHHHHHHHHHHHHHh-cCCcEEEEeccHHHHHH
Confidence 3455555554 34899999996431 11 112222333334444322 24577778887665443
No 456
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=38.99 E-value=99 Score=24.86 Aligned_cols=52 Identities=23% Similarity=0.198 Sum_probs=30.4
Q ss_pred HHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHH--HHHHhccCCCCeEEEEecCCcccc
Q psy4165 38 DWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNA--FLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 38 ~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~--lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
..|-... |.||++||-..-+. ......+.+ ++..+... +..+|.+|+.++.+
T Consensus 152 aral~~~-p~illlDEPt~~LD--------~~~~~~l~~~~ll~~~~~~--~~tii~~sH~~~~~ 205 (218)
T cd03290 152 ARALYQN-TNIVFLDDPFSALD--------IHLSDHLMQEGILKFLQDD--KRTLVLVTHKLQYL 205 (218)
T ss_pred HHHHhhC-CCEEEEeCCccccC--------HHHHHHHHHHHHHHHHhcC--CCEEEEEeCChHHH
Confidence 3444344 99999999765442 222333333 66555432 35778888877654
No 457
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=38.97 E-value=85 Score=25.47 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=32.1
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.+|++||--+-+ ....+..+..+|.++... +..+|.+|..++.+
T Consensus 144 la~al~~~-p~llllDEPt~~L--------D~~~~~~~~~~l~~~~~~--~~tii~~sH~~~~~ 196 (232)
T cd03218 144 IARALATN-PKFLLLDEPFAGV--------DPIAVQDIQKIIKILKDR--GIGVLITDHNVRET 196 (232)
T ss_pred HHHHHhcC-CCEEEecCCcccC--------CHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHH
Confidence 34444344 9999999964433 234556666777766432 34677777766543
No 458
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.95 E-value=1.7e+02 Score=24.84 Aligned_cols=55 Identities=13% Similarity=0.118 Sum_probs=34.1
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|-... |.||++||--+-+ ....+..+..+|..+... .+..||.+|..++.+.
T Consensus 156 laraL~~~-p~illlDEPt~~L--------D~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~ 210 (286)
T PRK13646 156 IVSILAMN-PDIIVLDEPTAGL--------DPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVA 210 (286)
T ss_pred HHHHHHhC-CCEEEEECCcccC--------CHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHH
Confidence 44555455 9999999975543 334555666777666332 2346777777766543
No 459
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=38.84 E-value=1e+02 Score=26.06 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=36.8
Q ss_pred HHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 35 KVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 35 ~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
-+|..|--.. |-+|++||-=.-+ .-..+..+...|.++-...+.--+|.-|.++++++|-+..
T Consensus 180 vLiaRALv~~-P~LLiLDEP~~GL--------Dl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 180 VLIARALVKD-PELLILDEPAQGL--------DLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred HHHHHHHhcC-CCEEEecCccccC--------ChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccce
Confidence 3455666555 9999999942221 1223434444555553333333566668899999877653
No 460
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=38.52 E-value=85 Score=26.08 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=32.9
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|--.. |.|+++||--.=+ .......+..+|..+... +..+|.+|.+++.+.
T Consensus 163 laral~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~l~~~--g~tiiivsH~~~~~~ 216 (257)
T PRK10619 163 IARALAME-PEVLLFDEPTSAL--------DPELVGEVLRIMQQLAEE--GKTMVVVTHEMGFAR 216 (257)
T ss_pred HHHHHhcC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHH
Confidence 33444344 9999999964432 334556666777776432 346677777766544
No 461
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=38.14 E-value=1.9e+02 Score=23.14 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=30.2
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
.|-... |.|+++||-..-+ ....+..+..+|..+.... +..+|.+|.++..+
T Consensus 141 ral~~~-p~llllDEPt~~L--------D~~~~~~~~~~l~~~~~~~-~~tii~vsh~~~~~ 192 (213)
T TIGR01277 141 RCLVRP-NPILLLDEPFSAL--------DPLLREEMLALVKQLCSER-QRTLLMVTHHLSDA 192 (213)
T ss_pred HHHhcC-CCEEEEcCCCccC--------CHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH
Confidence 333344 9999999976543 2334555566666653222 34666677766543
No 462
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=38.07 E-value=90 Score=25.80 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=32.6
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
.|-... |.||++||--+=+ ....+..+..+|..+... .+..||.+|+.++.+.
T Consensus 166 ~al~~~-p~llllDEPt~~L--------D~~~~~~l~~~L~~~~~~-~~~tii~~sH~~~~~~ 218 (255)
T PRK11300 166 RCMVTQ-PEILMLDEPAAGL--------NPKETKELDELIAELRNE-HNVTVLLIEHDMKLVM 218 (255)
T ss_pred HHHhcC-CCEEEEcCCccCC--------CHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHHHH
Confidence 333344 9999999965433 334555666666666332 2357788888776554
No 463
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=38.04 E-value=1e+02 Score=23.82 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=31.5
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.++++||--.-+ ....+..+.++|..+.. . +..+|.+|++++.+
T Consensus 107 la~al~~~-p~~lllDEPt~~L--------D~~~~~~l~~~l~~~~~-~-~~tii~~sh~~~~~ 159 (173)
T cd03246 107 LARALYGN-PRILVLDEPNSHL--------DVEGERALNQAIAALKA-A-GATRIVIAHRPETL 159 (173)
T ss_pred HHHHHhcC-CCEEEEECCcccc--------CHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHH
Confidence 44444444 9999999965433 33455566666666633 2 34666777766533
No 464
>PRK08118 topology modulation protein; Reviewed
Probab=37.96 E-value=1.9e+02 Score=22.39 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=32.7
Q ss_pred EEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 90 LVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 90 vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
+|.-.|....++..+ .++|..|.+..|...-..++++..+..
T Consensus 62 wVidG~~~~~~~~~l-~~~d~vi~Ld~p~~~~~~R~~~R~~~~ 103 (167)
T PRK08118 62 WIIDGNYGGTMDIRL-NAADTIIFLDIPRTICLYRAFKRRVQY 103 (167)
T ss_pred EEEeCCcchHHHHHH-HhCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 444556666666443 679999999999999999999998864
No 465
>PRK06934 flavodoxin; Provisional
Probab=37.69 E-value=47 Score=27.51 Aligned_cols=88 Identities=8% Similarity=0.030 Sum_probs=46.4
Q ss_pred hHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcE----EEEEecccccccc-cCCCccchHHHHHHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGL----VLFIDEADAFLRK-RSSETISESLRATLNA 76 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~----Il~iDeiD~l~~~-r~~~~~~~~~~~~l~~ 76 (242)
+|+.||+.+|+.++.+.+.+..... ....+...-.+......|. +.=|++.|.++-. .-- -...-..+..
T Consensus 76 vAe~Ia~~~gaDl~eI~~~~~Y~~~--yd~~~~~a~~E~~~~~~P~L~~~~~dl~~YD~I~IG~PIW---wg~~P~~V~t 150 (221)
T PRK06934 76 VAQIIQEETGGDLFRIETVKPYPRQ--HDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIFIGYPIW---WYKMPMVMYS 150 (221)
T ss_pred HHHHHHHHHCCCEEEEEEccccCCC--CchhhhHHHHhhhcCCCHHHHHHHHhHHhCCEEEEEcchh---hccccHHHHH
Confidence 6899999999999999987765421 1111111111222222242 2445556655521 111 1123456788
Q ss_pred HHHHhccCCCCeEEEEecC
Q psy4165 77 FLYRTGEQSDKFMLVLASN 95 (242)
Q Consensus 77 lL~~l~~~~~~v~vI~tTn 95 (242)
||...+-. ++.++..+|.
T Consensus 151 FLe~~d~~-GK~I~pF~T~ 168 (221)
T PRK06934 151 FFEQHDFS-GKTLIPFTTH 168 (221)
T ss_pred HHHhcCCC-CCEEEEEEec
Confidence 88877644 4444444444
No 466
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=37.52 E-value=1e+02 Score=25.18 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=31.8
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.++++||--+-+ ....+..+..+|..+. . +..+|.+|..++.+
T Consensus 150 la~al~~~-p~llllDEP~~gL--------D~~~~~~l~~~l~~~~--~-g~~vi~~sh~~~~~ 201 (238)
T cd03249 150 IARALLRN-PKILLLDEATSAL--------DAESEKLVQEALDRAM--K-GRTTIVIAHRLSTI 201 (238)
T ss_pred HHHHHhcC-CCEEEEeCccccC--------CHHHHHHHHHHHHHhc--C-CCEEEEEeCCHHHH
Confidence 34444344 9999999975433 3344556666766663 3 34667777776655
No 467
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.44 E-value=90 Score=26.22 Aligned_cols=53 Identities=21% Similarity=0.170 Sum_probs=31.8
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.||++||--+-+ ....+..+..+|..+... + ..+|.+|..++.+
T Consensus 147 laraL~~~-p~lllLDEPt~~L--------D~~~~~~l~~~l~~~~~~-g-~tii~vtH~~~~~ 199 (271)
T PRK13638 147 IAGALVLQ-ARYLLLDEPTAGL--------DPAGRTQMIAIIRRIVAQ-G-NHVIISSHDIDLI 199 (271)
T ss_pred HHHHHHcC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHHHC-C-CEEEEEeCCHHHH
Confidence 33444344 9999999965433 334555666677666432 3 3566777776654
No 468
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=37.43 E-value=79 Score=25.08 Aligned_cols=50 Identities=12% Similarity=0.223 Sum_probs=34.4
Q ss_pred HHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEeccccc
Q psy4165 3 AKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAF 57 (242)
Q Consensus 3 A~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l 57 (242)
+..+|+++|..+++.|...-.... -..|-++..+|. +. |.++.||+--..
T Consensus 16 vE~aa~~iGgRCIS~S~GNPT~ls---G~elV~lIk~a~-~D-PV~VMfDD~G~~ 65 (180)
T PF14097_consen 16 VEIAAKNIGGRCISQSAGNPTPLS---GEELVELIKQAP-HD-PVLVMFDDKGFI 65 (180)
T ss_pred HHHHHHHhCcEEEeccCCCCCcCC---HHHHHHHHHhCC-CC-CEEEEEeCCCCC
Confidence 356788999999999876543322 234556666666 44 999999996544
No 469
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=37.37 E-value=1.9e+02 Score=23.57 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=31.8
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.||++||--+-+ ....+..+..+|..+.... +..+|.+|..++.+
T Consensus 156 la~al~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~~~-~~tiii~tH~~~~~ 209 (243)
T TIGR02315 156 IARALAQQ-PDLILADEPIASL--------DPKTSKQVMDYLKRINKED-GITVIINLHQVDLA 209 (243)
T ss_pred HHHHHhcC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHH
Confidence 33444344 9999999975433 2345556667776663222 33666677765543
No 470
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=37.34 E-value=1e+02 Score=25.13 Aligned_cols=52 Identities=12% Similarity=0.069 Sum_probs=32.1
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.+|++||--+-+ ....+..+..+|..+. . +..+|.+|+.++.+
T Consensus 149 laral~~~-p~llllDEP~~~L--------D~~~~~~l~~~l~~~~--~-~~tiii~sH~~~~~ 200 (237)
T cd03252 149 IARALIHN-PRILIFDEATSAL--------DYESEHAIMRNMHDIC--A-GRTVIIIAHRLSTV 200 (237)
T ss_pred HHHHHhhC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHhc--C-CCEEEEEeCCHHHH
Confidence 33444344 9999999975543 2334555666666663 2 34677778777654
No 471
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.34 E-value=1.8e+02 Score=23.23 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=31.1
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.|+++||--+-+ ....+..+.++|..+....+ ..||.+|.+++.+
T Consensus 141 la~al~~~-p~~lllDEPt~~L--------D~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~ 194 (213)
T cd03259 141 LARALARE-PSLLLLDEPLSAL--------DAKLREELREELKELQRELG-ITTIYVTHDQEEA 194 (213)
T ss_pred HHHHHhcC-CCEEEEcCCcccC--------CHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHH
Confidence 34444344 9999999965433 23345556666666532223 3566677766543
No 472
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=37.30 E-value=96 Score=25.38 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=31.0
Q ss_pred HHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 38 DWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 38 ~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
..|-... |.|+++||--+-+ ....+..+..+|..+... + ..+|.+|.+++.+
T Consensus 148 a~al~~~-p~llllDEP~~~L--------D~~~~~~l~~~l~~~~~~-~-~tiii~sH~~~~~ 199 (240)
T PRK09493 148 ARALAVK-PKLMLFDEPTSAL--------DPELRHEVLKVMQDLAEE-G-MTMVIVTHEIGFA 199 (240)
T ss_pred HHHHhcC-CCEEEEcCCcccC--------CHHHHHHHHHHHHHHHHc-C-CEEEEEeCCHHHH
Confidence 3344344 9999999976543 233455566677666322 3 3566677766544
No 473
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=37.25 E-value=1.7e+02 Score=27.26 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=33.6
Q ss_pred HHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 36 VFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 36 ~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
.+..|-... |.||++||--+-+ .......+..+|..+.... +..||.+|.++..+.
T Consensus 178 ~iA~al~~~-p~lllLDEPt~~L--------D~~~~~~l~~~l~~l~~~~-g~tviivtHd~~~~~ 233 (520)
T TIGR03269 178 VLARQLAKE-PFLFLADEPTGTL--------DPQTAKLVHNALEEAVKAS-GISMVLTSHWPEVIE 233 (520)
T ss_pred HHHHHHhcC-CCEEEeeCCcccC--------CHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHH
Confidence 344555455 9999999965443 2334555566666663222 346777788766554
No 474
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=37.22 E-value=1.6e+02 Score=24.27 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=31.2
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.+|++||--+-+ ....+..+..+|..+.. + ..+|.+|.+++.+
T Consensus 155 laral~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~ 206 (247)
T TIGR00972 155 IARALAVE-PEVLLLDEPTSAL--------DPIATGKIEELIQELKK--K-YTIVIVTHNMQQA 206 (247)
T ss_pred HHHHHhcC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHH
Confidence 44444455 9999999965433 23345556666666533 2 3666777766544
No 475
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.17 E-value=2e+02 Score=24.44 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=32.1
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-..+ |.||++||--+-+ .......+..+|..+.... +..||.+|..++.+
T Consensus 156 lAraL~~~-P~llllDEPt~~L--------D~~~~~~l~~~L~~l~~~~-g~tviiitHd~~~~ 209 (290)
T PRK13634 156 IAGVLAME-PEVLVLDEPTAGL--------DPKGRKEMMEMFYKLHKEK-GLTTVLVTHSMEDA 209 (290)
T ss_pred HHHHHHcC-CCEEEEECCcccC--------CHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH
Confidence 44455455 9999999975543 2334455556666653222 34677777776544
No 476
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=37.02 E-value=2.1e+02 Score=23.66 Aligned_cols=54 Identities=13% Similarity=0.096 Sum_probs=32.2
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.||++||--+-+ ....+..+..+|..+.... +..||.+|++++.+
T Consensus 151 laral~~~-p~lLlLDEPt~~L--------D~~~~~~l~~~L~~~~~~~-g~til~~sH~~~~~ 204 (254)
T PRK10418 151 IALALLCE-APFIIADEPTTDL--------DVVAQARILDLLESIVQKR-ALGMLLVTHDMGVV 204 (254)
T ss_pred HHHHHhcC-CCEEEEeCCCccc--------CHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHH
Confidence 44444455 9999999965443 2344556666666653222 34677777776554
No 477
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.00 E-value=1.7e+02 Score=23.47 Aligned_cols=54 Identities=19% Similarity=0.146 Sum_probs=31.5
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.++++||--+-+ ....+..+.++|.++....+ ..+|.+|.++..+
T Consensus 142 la~al~~~-p~lllLDEPt~~L--------D~~~~~~~~~~l~~~~~~~~-~tiii~sH~~~~~ 195 (220)
T cd03293 142 LARALAVD-PDVLLLDEPFSAL--------DALTREQLQEELLDIWRETG-KTVLLVTHDIDEA 195 (220)
T ss_pred HHHHHHcC-CCEEEECCCCCCC--------CHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHH
Confidence 34444444 9999999964432 33455566666666532222 3566677766543
No 478
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=36.86 E-value=1.9e+02 Score=23.86 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=32.6
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFP 115 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~ 115 (242)
+|.++++||-.+-+. ......+..+|..+. . +..+|.+|+++ .+....|+.+-+.
T Consensus 188 ~~~illlDEPt~~ld--------~~~~~~~~~~l~~~~--~-g~~ii~iSH~~-----~~~~~~d~v~~~~ 242 (251)
T cd03273 188 PAPMYILDEVDAALD--------LSHTQNIGRMIKTHF--K-GSQFIVVSLKE-----GMFNNANVLFRTR 242 (251)
T ss_pred CCCEEEEeCCCcCCC--------HHHHHHHHHHHHHHc--C-CCEEEEEECCH-----HHHHhCCEEEEEE
Confidence 378999999876542 233445555665552 2 34677778773 3333456666554
No 479
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=36.63 E-value=1e+02 Score=25.03 Aligned_cols=54 Identities=22% Similarity=0.227 Sum_probs=31.1
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|--.. |.+|++||--+-+ ....+..+..+|..+... +..||.+|..++.+.
T Consensus 153 laral~~~-p~llllDEP~~gL--------D~~~~~~~~~~l~~~~~~--~~tiii~sH~~~~~~ 206 (224)
T cd03220 153 FAIATALE-PDILLIDEVLAVG--------DAAFQEKCQRRLRELLKQ--GKTVILVSHDPSSIK 206 (224)
T ss_pred HHHHHhcC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHH
Confidence 33444344 9999999965443 233445555566555322 336777777765443
No 480
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.62 E-value=1e+02 Score=25.42 Aligned_cols=52 Identities=13% Similarity=0.234 Sum_probs=32.2
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.|+++||--+=+ ....+..+.++|..+.. + ..+|.+|.+++.+
T Consensus 156 laral~~~-p~llllDEP~~~L--------D~~~~~~l~~~l~~~~~--~-~tii~~sh~~~~~ 207 (249)
T PRK14253 156 IARTIAME-PDVILMDEPTSAL--------DPIATHKIEELMEELKK--N-YTIVIVTHSMQQA 207 (249)
T ss_pred HHHHHHcC-CCEEEEeCCCccC--------CHHHHHHHHHHHHHHhc--C-CeEEEEecCHHHH
Confidence 33444344 9999999975533 23455666777777742 2 4677777766543
No 481
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=36.31 E-value=1.4e+02 Score=27.52 Aligned_cols=54 Identities=24% Similarity=0.151 Sum_probs=33.3
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|-... |.++++||--+-+ .......+..+|..+... +..||.+|.+++.+.
T Consensus 146 la~al~~~-p~lllLDEPt~~L--------D~~~~~~l~~~l~~~~~~--g~tvii~tH~~~~~~ 199 (490)
T PRK10938 146 LCQALMSE-PDLLILDEPFDGL--------DVASRQQLAELLASLHQS--GITLVLVLNRFDEIP 199 (490)
T ss_pred HHHHHHcC-CCEEEEcCCcccC--------CHHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHH
Confidence 33444344 9999999964432 344566667777776432 346777787765543
No 482
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=36.30 E-value=26 Score=28.08 Aligned_cols=48 Identities=21% Similarity=0.370 Sum_probs=28.6
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHh--ccCCCCeEEEEecCCcc
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT--GEQSDKFMLVLASNTPQ 98 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l--~~~~~~v~vI~tTn~~~ 98 (242)
+-+++|||...+........ +.-+...|..+ ....-+|.+|.+|.+|+
T Consensus 155 ~i~~~iDe~~~l~~~~~~~~-----~~~~~~~l~~i~~~gR~~Gi~li~~~Q~p~ 204 (205)
T PF01580_consen 155 PIFIVIDEFAALRDSAPDDS-----KKEIMDLLARIARKGRAAGIHLILATQRPS 204 (205)
T ss_dssp EEEEEECTHHHHHHHHHHH---------HHHHHHHHHHHCGGGTEEEEEEESS-S
T ss_pred hHHHHhhhHHHHHhhcchhh-----HHHHHHHHHHHHHHHHhcCEEEEEEeCCCC
Confidence 68889999999975432211 12233333333 24566799999998876
No 483
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.29 E-value=1.9e+02 Score=24.56 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=32.8
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.||++||--+-+ ....+..+..+|..+.... +..||.+|.+++.+
T Consensus 161 laral~~~-p~lLlLDEPt~~L--------D~~~~~~l~~~l~~~~~~~-~~tiiiisH~~~~~ 214 (289)
T PRK13645 161 LAGIIAMD-GNTLVLDEPTGGL--------DPKGEEDFINLFERLNKEY-KKRIIMVTHNMDQV 214 (289)
T ss_pred HHHHHHhC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH
Confidence 44444445 9999999965543 2334556666666663222 34677788876644
No 484
>KOG0922|consensus
Probab=36.23 E-value=1.5e+02 Score=28.75 Aligned_cols=88 Identities=19% Similarity=0.244 Sum_probs=48.5
Q ss_pred hHHHHHHhcCCcE-----EEEecCCccc-----cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHH
Q psy4165 2 FAKKLAHHSGMDY-----AIMTGGDVAP-----MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 2 lA~aiA~e~~~~~-----~~v~~~~l~~-----~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
||+-+|.|.|+.+ |.+.-.+..+ ++ -++ --|++++..-- ..+-+||+|||++.= .-.
T Consensus 111 lA~RVAeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG-~LLRE~l~Dp~-LskYsvIIlDEAHER----------sl~ 178 (674)
T KOG0922|consen 111 LAKRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDG-MLLREILKDPL-LSKYSVIILDEAHER----------SLH 178 (674)
T ss_pred HHHHHHHHhCCCcCceeeeEEEecccCCCceeEEEecch-HHHHHHhcCCc-cccccEEEEechhhh----------hhH
Confidence 7889999999854 3343333322 23 222 24555554322 223599999998641 223
Q ss_pred HHHHHHHHHHhc-cCCC-CeEEEEecCCccccc
Q psy4165 71 RATLNAFLYRTG-EQSD-KFMLVLASNTPQQFD 101 (242)
Q Consensus 71 ~~~l~~lL~~l~-~~~~-~v~vI~tTn~~~~ld 101 (242)
..++--||+.+- ...+ +++|.-||=..+.+.
T Consensus 179 TDiLlGlLKki~~~R~~LklIimSATlda~kfS 211 (674)
T KOG0922|consen 179 TDILLGLLKKILKKRPDLKLIIMSATLDAEKFS 211 (674)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEeeeecHHHHH
Confidence 456666777763 3333 566665664444443
No 485
>KOG0058|consensus
Probab=36.19 E-value=93 Score=30.36 Aligned_cols=14 Identities=43% Similarity=0.517 Sum_probs=11.8
Q ss_pred CcEEEEEecccccc
Q psy4165 45 KGLVLFIDEADAFL 58 (242)
Q Consensus 45 ~p~Il~iDeiD~l~ 58 (242)
+|+||++||+=+-+
T Consensus 622 ~P~VLILDEATSAL 635 (716)
T KOG0058|consen 622 NPRVLILDEATSAL 635 (716)
T ss_pred CCCEEEEechhhhc
Confidence 39999999987665
No 486
>PF01300 Sua5_yciO_yrdC: Telomere recombination; InterPro: IPR006070 The YrdC family of hypothetical proteins are widely distributed in eukaryotes and prokaryotes and occur as: (i) independent proteins, (ii) with C-terminal extensions, and (iii) as domains in larger proteins, some of which are implicated in regulation []. The YrdC protein, which consists solely of this domain, forms an alpha/beta twisted open-sheet structure composed of seven alpha helices and seven beta strands []. YrdC from Escherichia coli preferentially binds to double-stranded RNA and DNA. YrdC is predicted to be an rRNA maturation factor, as deletions in its gene lead to immature ribosomal 30S subunits and, consequently, fewer translating ribosomes []. Therefore, YrdC may function by keeping an rRNA structure needed for proper processing of 16S rRNA, especially at lower temperatures. Sua5 is an example of a multi-domain protein that contains an N-terminal YrdC-like domain and a C-terminal Sua5 domain. Sua5 was identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a translation initiation defect in the cytochrome c gene and is required for normal growth in yeast; however its exact function remains unknown []. HypF is involved in the synthesis of the active site of [NiFe]-hydrogenases [].; PDB: 3L7V_A 1KK9_A 1K7J_A 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A 2EQA_A ....
Probab=35.92 E-value=2.1e+02 Score=22.47 Aligned_cols=94 Identities=13% Similarity=0.231 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHhC-CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 28 SGVTAIHKVFDWASSS-RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 28 ~~e~~l~~~f~~A~~~-~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
..+..++++|+.=++. .+|-++++.+++.+..--. ........+++..|. .+.+.+|.-.+. ..+++.+.+
T Consensus 24 ~n~~av~ri~~iK~R~~~Kpl~ll~~~~~~l~~~~~-~~~~~~~~~l~~~~w------Pgp~t~I~~~~~-~~l~~~~~~ 95 (179)
T PF01300_consen 24 FNPEAVERIYKIKQRPKNKPLILLVSSIEQLEEYVD-SPVSPKARRLLEKFW------PGPLTLILPAKK-ENLPKYLTS 95 (179)
T ss_dssp TSHHHHHHHHHHHTSSTTS--EEEESSHHHHHHHEE-TT--HHHHHHHHHCH------SSSEEEEEEEGT-TCSHHHHHT
T ss_pred CCHHHHHHHHHhhcccCCCCEEEEECCHHHHHHHhh-ccccHHHHHHHHhcc------ccCeeEeecccc-ccCChhhcC
Confidence 3467788888755443 4599999988887754222 111222333333332 677788776422 126666654
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHH
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l 130 (242)
.. ..|-|..|+...-+++++..=
T Consensus 96 ~~-~ti~vRip~~~~~~~l~~~~g 118 (179)
T PF01300_consen 96 KR-GTIGVRIPDHPILRELLEALG 118 (179)
T ss_dssp TT-SEEEEECHCSHHHHHHHHHHT
T ss_pred CC-CeEEEEecChHHHHHHHHhcC
Confidence 44 488999999998888888764
No 487
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=35.90 E-value=1.9e+02 Score=23.85 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=28.3
Q ss_pred cEEEEEeccccccc------ccCCCc------cchHHHHHHHHHHHHhccCCCCeEEEEec
Q psy4165 46 GLVLFIDEADAFLR------KRSSET------ISESLRATLNAFLYRTGEQSDKFMLVLAS 94 (242)
Q Consensus 46 p~Il~iDeiD~l~~------~r~~~~------~~~~~~~~l~~lL~~l~~~~~~v~vI~tT 94 (242)
.-.|+||.++.+.. .+.... .-+.....+..+|+.+...+-.|++++-.
T Consensus 82 ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe 142 (220)
T TIGR01618 82 YDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWE 142 (220)
T ss_pred CCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 68999999999865 221111 11223344555566665555567777633
No 488
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=35.89 E-value=1.1e+02 Score=25.45 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=32.5
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.++++||--+=+ .......+..+|.++... +..+|.+|+.++.+
T Consensus 148 la~al~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~ 200 (256)
T TIGR03873 148 VARALAQE-PKLLLLDEPTNHL--------DVRAQLETLALVRELAAT--GVTVVAALHDLNLA 200 (256)
T ss_pred HHHHHhcC-CCEEEEcCccccC--------CHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH
Confidence 33444344 9999999965533 233455666777766422 34677777776654
No 489
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=35.89 E-value=1.6e+02 Score=24.58 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=32.3
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|-... |.||++||--+-+ ....+..+..+|..+.. + ..+|.+|.+++.+.
T Consensus 174 laral~~~-p~lllLDEPt~~L--------D~~~~~~l~~~L~~l~~--~-~tiiivtH~~~~~~ 226 (267)
T PRK14235 174 IARAIAVS-PEVILMDEPCSAL--------DPIATAKVEELIDELRQ--N-YTIVIVTHSMQQAA 226 (267)
T ss_pred HHHHHHcC-CCEEEEeCCCcCC--------CHHHHHHHHHHHHHHhc--C-CeEEEEEcCHHHHH
Confidence 44444455 9999999965543 23345566666666632 2 36667777665543
No 490
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=35.83 E-value=1e+02 Score=25.29 Aligned_cols=54 Identities=9% Similarity=0.080 Sum_probs=31.5
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|-... |.++++||--.-+ ....+..+..++..+.. .+ ..+|.+|.+++.+.
T Consensus 148 laral~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~-~g-~tiii~sH~~~~~~ 201 (241)
T PRK10895 148 IARALAAN-PKFILLDEPFAGV--------DPISVIDIKRIIEHLRD-SG-LGVLITDHNVRETL 201 (241)
T ss_pred HHHHHhcC-CCEEEEcCCcccC--------CHHHHHHHHHHHHHHHh-cC-CEEEEEEcCHHHHH
Confidence 33444344 9999999965433 23345555666666643 23 36667777665443
No 491
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=35.77 E-value=1.7e+02 Score=24.53 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=32.0
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |-||++||--+-+ ....+..+.++|..+.... +..||.+|.+++.+
T Consensus 160 laral~~~-p~lllLDEPt~~L--------D~~~~~~l~~~l~~~~~~~-g~tviivsH~~~~~ 213 (267)
T PRK15112 160 LARALILR-PKVIIADEALASL--------DMSMRSQLINLMLELQEKQ-GISYIYVTQHLGMM 213 (267)
T ss_pred HHHHHHhC-CCEEEEcCCcccC--------CHHHHHHHHHHHHHHHHHc-CcEEEEEeCCHHHH
Confidence 44444445 9999999965543 2345556666666663322 33566677766544
No 492
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=35.77 E-value=2.1e+02 Score=23.25 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=31.6
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFP 115 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~ 115 (242)
+|.++++||-..-+ +......+..+|.++.. +..+|.+|+.++ +....|+.+.+.
T Consensus 180 ~~~illlDEp~~~l--------d~~~~~~~~~~l~~~~~---~~~ii~~~h~~~-----~~~~~d~i~~l~ 234 (243)
T cd03272 180 PAPFYLFDEIDAAL--------DAQYRTAVANMIKELSD---GAQFITTTFRPE-----LLEVADKFYGVK 234 (243)
T ss_pred CCCEEEEECCccCC--------CHHHHHHHHHHHHHHhC---CCEEEEEecCHH-----HHhhCCEEEEEE
Confidence 37899999976543 23344445555555532 346667777532 334556665553
No 493
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=35.71 E-value=1e+02 Score=25.89 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=29.6
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
|.|+++||--+-+ ....+..+.++|..+.. . +..||.+|.+++.+.
T Consensus 161 p~llllDEPt~~L--------D~~~~~~l~~~L~~~~~-~-g~tviivsH~~~~~~ 206 (272)
T PRK15056 161 GQVILLDEPFTGV--------DVKTEARIISLLRELRD-E-GKTMLVSTHNLGSVT 206 (272)
T ss_pred CCEEEEeCCCccC--------CHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHH
Confidence 9999999965433 33455666777776642 2 346777787766553
No 494
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=35.68 E-value=98 Score=24.86 Aligned_cols=45 Identities=11% Similarity=0.194 Sum_probs=28.3
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccc
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQ 99 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ 99 (242)
+|.+|++||--+=+ ....+..+..+|.++.. . +..+|.+|..++.
T Consensus 150 ~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~ 194 (222)
T cd03224 150 RPKLLLLDEPSEGL--------APKIVEEIFEAIRELRD-E-GVTILLVEQNARF 194 (222)
T ss_pred CCCEEEECCCcccC--------CHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHH
Confidence 39999999964433 33455566667666633 2 3467777776653
No 495
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=35.38 E-value=1.5e+02 Score=24.67 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=33.0
Q ss_pred CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhccc
Q psy4165 43 SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRL 108 (242)
Q Consensus 43 ~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rf 108 (242)
+. |+|++|||--+= -.-...+.+..|+.++.+. +-.||.+|...+.+. ++..|+
T Consensus 150 h~-P~i~vlDEP~sG--------LDi~~~r~~~dfi~q~k~e--gr~viFSSH~m~Eve-alCDrv 203 (245)
T COG4555 150 HD-PSILVLDEPTSG--------LDIRTRRKFHDFIKQLKNE--GRAVIFSSHIMQEVE-ALCDRV 203 (245)
T ss_pred cC-CCeEEEcCCCCC--------ccHHHHHHHHHHHHHhhcC--CcEEEEecccHHHHH-HhhheE
Confidence 45 999999994221 1222456667777777433 337888888766654 444444
No 496
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=35.31 E-value=1e+02 Score=25.14 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=27.4
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
|.|+++||--.=+ ....+..+..+|.++... + ..+|.+|..++.+
T Consensus 156 p~illlDEPt~~L--------D~~~~~~l~~~l~~~~~~-~-~tiii~sH~~~~~ 200 (237)
T PRK11614 156 PRLLLLDEPSLGL--------APIIIQQIFDTIEQLREQ-G-MTIFLVEQNANQA 200 (237)
T ss_pred CCEEEEcCccccC--------CHHHHHHHHHHHHHHHHC-C-CEEEEEeCcHHHH
Confidence 9999999964433 233455666666666332 3 3566677765543
No 497
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=35.18 E-value=1.1e+02 Score=25.66 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=32.0
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|.... |.|+++||--+-+ .......+.++|..+.. . +..+|.+|...+.+.
T Consensus 154 Laral~~~-p~iLlLDEPt~gL--------D~~~~~~l~~~L~~~~~-~-g~tiIiisH~~~~i~ 207 (264)
T PRK13546 154 FSINITVN-PDILVIDEALSVG--------DQTFAQKCLDKIYEFKE-Q-NKTIFFVSHNLGQVR 207 (264)
T ss_pred HHHHHhhC-CCEEEEeCccccC--------CHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHH
Confidence 44444444 9999999976543 22344455566666532 2 346777777766554
No 498
>PRK10908 cell division protein FtsE; Provisional
Probab=35.15 E-value=1.1e+02 Score=24.72 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=30.7
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
.|--.. |-++++||--.-+ ....+..+..+|..+... +..+|.+|..++.+.
T Consensus 150 ral~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~ 201 (222)
T PRK10908 150 RAVVNK-PAVLLADEPTGNL--------DDALSEGILRLFEEFNRV--GVTVLMATHDIGLIS 201 (222)
T ss_pred HHHHcC-CCEEEEeCCCCcC--------CHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHH
Confidence 333344 9999999965433 233455566666666322 346777777765443
No 499
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=35.13 E-value=66 Score=29.65 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=31.0
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
.+.+.. |.++++||+++.+.. -...++.. =+..+ ...-++.+|+.|++|+-++
T Consensus 520 kllaer-pn~~~iDEF~AhLD~-------~TA~rVAr-kisel-aRe~giTlivvThrpEv~~ 572 (593)
T COG2401 520 KLLAER-PNVLLIDEFAAHLDE-------LTAVRVAR-KISEL-AREAGITLIVVTHRPEVGN 572 (593)
T ss_pred HHHhcC-CCcEEhhhhhhhcCH-------HHHHHHHH-HHHHH-HHHhCCeEEEEecCHHHHh
Confidence 334454 899999999998631 11122211 12222 1234578888999987554
No 500
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=35.12 E-value=2.4e+02 Score=22.84 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=36.5
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
+..|-... |.|+++||--.=+ .......+..+|.++....+ ..+|.+|..++.+. ..|+.+.+
T Consensus 148 laral~~~-p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~~~~-~tvii~sh~~~~~~-----~~d~i~~l 210 (225)
T PRK10247 148 LIRNLQFM-PKVLLLDEITSAL--------DESNKHNVNEIIHRYVREQN-IAVLWVTHDKDEIN-----HADKVITL 210 (225)
T ss_pred HHHHHhcC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHHHhcC-CEEEEEECChHHHH-----hCCEEEEE
Confidence 44555455 9999999964332 23345566666666533223 35666666655442 25666666
Done!