Query psy4165
Match_columns 242
No_of_seqs 196 out of 1632
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 18:33:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.1E-40 3.7E-45 294.6 24.1 189 1-205 197-392 (405)
2 4b4t_H 26S protease regulatory 100.0 2.1E-39 7.3E-44 289.8 23.9 195 1-211 258-459 (467)
3 4b4t_I 26S protease regulatory 100.0 9.7E-40 3.3E-44 289.5 21.4 189 1-205 231-426 (437)
4 4b4t_L 26S protease subunit RP 100.0 1E-38 3.5E-43 285.7 21.5 189 1-205 230-425 (437)
5 4b4t_M 26S protease regulatory 100.0 2.6E-39 8.9E-44 289.3 17.6 187 1-203 230-423 (434)
6 4b4t_K 26S protease regulatory 100.0 1.6E-37 5.3E-42 277.6 22.6 187 1-203 221-415 (428)
7 3cf2_A TER ATPase, transitiona 100.0 2.7E-36 9.1E-41 286.9 4.2 188 1-204 526-745 (806)
8 3cf2_A TER ATPase, transitiona 100.0 2.2E-32 7.5E-37 260.1 15.1 185 1-202 253-459 (806)
9 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.4E-28 4.9E-33 213.4 21.9 166 1-182 60-230 (322)
10 2ce7_A Cell division protein F 100.0 2.8E-29 9.4E-34 227.5 16.7 189 1-205 64-259 (476)
11 3eie_A Vacuolar protein sortin 100.0 1.7E-28 6E-33 212.7 17.4 166 1-182 66-235 (322)
12 2qp9_X Vacuolar protein sortin 100.0 7.4E-28 2.5E-32 211.5 20.1 168 1-184 99-270 (355)
13 2x8a_A Nuclear valosin-contain 100.0 1.8E-27 6E-32 202.1 17.9 187 1-202 59-264 (274)
14 1lv7_A FTSH; alpha/beta domain 99.9 1.2E-26 4.2E-31 194.6 20.0 188 1-204 60-254 (257)
15 3h4m_A Proteasome-activating n 99.9 4.1E-26 1.4E-30 193.8 22.7 191 1-207 66-263 (285)
16 2zan_A Vacuolar protein sortin 99.9 5E-27 1.7E-31 211.9 17.0 166 1-182 182-352 (444)
17 3cf0_A Transitional endoplasmi 99.9 2.7E-27 9.2E-32 203.4 13.7 167 1-183 64-237 (301)
18 3hu3_A Transitional endoplasmi 99.9 4.2E-26 1.4E-30 207.8 20.1 190 1-207 253-464 (489)
19 2qz4_A Paraplegin; AAA+, SPG7, 99.9 2.7E-26 9.2E-31 192.2 17.4 196 1-210 54-257 (262)
20 2dhr_A FTSH; AAA+ protein, hex 99.9 8.9E-27 3E-31 212.2 14.3 189 1-205 79-274 (499)
21 3d8b_A Fidgetin-like protein 1 99.9 5.8E-25 2E-29 193.2 21.9 188 1-204 132-336 (357)
22 1ixz_A ATP-dependent metallopr 99.9 3.1E-24 1.1E-28 179.5 18.9 183 1-199 64-253 (254)
23 3b9p_A CG5977-PA, isoform A; A 99.9 3.7E-24 1.3E-28 182.8 19.4 186 1-202 69-272 (297)
24 3vfd_A Spastin; ATPase, microt 99.9 4.4E-24 1.5E-28 189.5 20.3 186 1-202 163-365 (389)
25 1iy2_A ATP-dependent metallopr 99.9 4.1E-23 1.4E-27 175.2 19.9 183 1-199 88-277 (278)
26 2r62_A Cell division protease 99.9 4.3E-26 1.5E-30 192.1 -4.6 189 1-205 59-256 (268)
27 1ypw_A Transitional endoplasmi 99.9 3.8E-25 1.3E-29 212.4 -0.9 167 1-183 526-699 (806)
28 3t15_A Ribulose bisphosphate c 99.9 2.8E-22 9.5E-27 171.6 7.7 152 1-174 51-223 (293)
29 1ypw_A Transitional endoplasmi 99.8 7E-19 2.4E-23 169.0 17.5 166 1-183 253-423 (806)
30 2c9o_A RUVB-like 1; hexameric 99.7 8.9E-20 3.1E-24 165.0 -7.1 150 1-176 78-261 (456)
31 3syl_A Protein CBBX; photosynt 99.7 4.1E-16 1.4E-20 133.3 14.1 158 1-179 82-259 (309)
32 3uk6_A RUVB-like 2; hexameric 99.6 4.3E-14 1.5E-18 123.6 16.9 175 1-202 85-330 (368)
33 1d2n_A N-ethylmaleimide-sensit 99.6 1E-14 3.5E-19 122.8 12.3 155 1-176 79-243 (272)
34 3pfi_A Holliday junction ATP-d 99.6 2.3E-13 7.8E-18 117.8 18.7 166 1-201 70-253 (338)
35 1ofh_A ATP-dependent HSL prote 99.6 8.9E-14 3E-18 118.4 15.4 195 1-201 65-298 (310)
36 3m6a_A ATP-dependent protease 99.5 5.4E-15 1.9E-19 136.3 7.1 185 1-201 123-340 (543)
37 3kw6_A 26S protease regulatory 99.5 9.5E-14 3.2E-18 95.2 9.2 75 115-204 1-75 (78)
38 1hqc_A RUVB; extended AAA-ATPa 99.5 2.2E-13 7.7E-18 116.9 13.1 170 1-201 53-237 (324)
39 2krk_A 26S protease regulatory 99.4 4.9E-13 1.7E-17 93.3 9.4 76 113-203 7-82 (86)
40 2v1u_A Cell division control p 99.4 7E-12 2.4E-16 109.5 18.0 183 2-204 60-278 (387)
41 2chg_A Replication factor C sm 99.4 2.3E-11 7.9E-16 97.7 18.8 161 2-200 54-224 (226)
42 3hws_A ATP-dependent CLP prote 99.4 2.3E-13 7.8E-18 119.3 6.7 176 1-182 66-322 (363)
43 3u61_B DNA polymerase accessor 99.4 1.2E-12 4.1E-17 112.6 10.2 169 1-200 63-235 (324)
44 3pvs_A Replication-associated 99.4 7.5E-12 2.6E-16 112.7 15.3 170 1-201 65-243 (447)
45 3vlf_B 26S protease regulatory 99.4 1.1E-12 3.7E-17 92.0 7.6 83 118-215 2-84 (88)
46 1r6b_X CLPA protein; AAA+, N-t 99.4 3.6E-12 1.2E-16 121.7 13.3 184 2-202 223-433 (758)
47 1njg_A DNA polymerase III subu 99.4 2.4E-11 8.3E-16 98.6 16.5 138 30-199 108-248 (250)
48 2z4s_A Chromosomal replication 99.3 1.5E-11 5.2E-16 110.6 14.6 178 1-203 145-333 (440)
49 1qvr_A CLPB protein; coiled co 99.3 4.5E-11 1.5E-15 115.7 16.8 164 2-182 207-392 (854)
50 1jbk_A CLPB protein; beta barr 99.3 2.8E-12 9.7E-17 100.7 6.3 118 2-126 59-194 (195)
51 2r44_A Uncharacterized protein 99.3 1.3E-10 4.5E-15 100.2 17.2 186 1-204 61-299 (331)
52 4fcw_A Chaperone protein CLPB; 99.3 1.1E-11 3.7E-16 105.7 10.0 159 1-178 62-274 (311)
53 1g41_A Heat shock protein HSLU 99.3 6.3E-13 2.2E-17 119.0 1.9 118 1-127 65-189 (444)
54 1l8q_A Chromosomal replication 99.3 6E-11 2E-15 102.1 13.9 173 1-200 52-238 (324)
55 1in4_A RUVB, holliday junction 99.3 8.5E-10 2.9E-14 95.5 20.4 170 1-202 66-250 (334)
56 3pxg_A Negative regulator of g 99.3 8.2E-12 2.8E-16 113.1 7.8 147 1-180 216-383 (468)
57 3aji_B S6C, proteasome (prosom 99.2 3.9E-11 1.3E-15 83.0 8.4 73 118-205 2-74 (83)
58 2qby_A CDC6 homolog 1, cell di 99.2 9.9E-10 3.4E-14 95.6 19.4 182 2-203 61-273 (386)
59 2qby_B CDC6 homolog 3, cell di 99.2 5E-10 1.7E-14 98.0 17.5 174 2-203 61-271 (384)
60 3bos_A Putative DNA replicatio 99.2 2.5E-10 8.7E-15 93.0 14.4 165 2-200 68-241 (242)
61 3te6_A Regulatory protein SIR3 99.2 3.3E-11 1.1E-15 103.7 9.2 121 2-133 61-214 (318)
62 1r6b_X CLPA protein; AAA+, N-t 99.2 1.6E-10 5.3E-15 110.4 13.9 157 1-177 503-710 (758)
63 3pxi_A Negative regulator of g 99.2 4.7E-11 1.6E-15 114.1 9.8 155 1-176 536-718 (758)
64 1um8_A ATP-dependent CLP prote 99.2 1.3E-10 4.4E-15 102.1 11.7 175 1-181 87-338 (376)
65 1fnn_A CDC6P, cell division co 99.2 1.7E-09 5.8E-14 94.5 18.8 177 2-202 60-274 (389)
66 3pxi_A Negative regulator of g 99.2 1.1E-10 3.9E-15 111.4 11.2 149 1-182 216-385 (758)
67 1sxj_A Activator 1 95 kDa subu 99.2 1.9E-10 6.5E-15 105.3 11.6 171 1-202 92-274 (516)
68 1sxj_D Activator 1 41 kDa subu 99.1 1.4E-09 4.9E-14 93.9 16.2 163 2-199 74-260 (353)
69 1jr3_A DNA polymerase III subu 99.1 3E-09 1E-13 92.5 16.5 135 32-198 103-240 (373)
70 2chq_A Replication factor C sm 99.1 8.2E-10 2.8E-14 94.0 12.4 163 2-198 54-222 (319)
71 2p65_A Hypothetical protein PF 99.1 1.9E-10 6.4E-15 90.0 7.4 111 2-118 59-187 (187)
72 1sxj_B Activator 1 37 kDa subu 99.1 2.3E-09 7.9E-14 91.3 14.1 161 2-200 58-229 (323)
73 1g8p_A Magnesium-chelatase 38 99.1 1.9E-09 6.5E-14 93.1 13.5 147 46-205 145-325 (350)
74 2dzn_B 26S protease regulatory 99.1 4E-11 1.4E-15 82.8 1.9 69 120-203 1-69 (82)
75 1iqp_A RFCS; clamp loader, ext 99.0 1E-08 3.6E-13 87.4 15.0 142 2-176 62-213 (327)
76 1qvr_A CLPB protein; coiled co 99.0 3.1E-09 1.1E-13 102.8 11.4 159 1-177 603-814 (854)
77 3nbx_X ATPase RAVA; AAA+ ATPas 98.9 9.8E-10 3.4E-14 100.1 6.7 181 1-196 56-280 (500)
78 2c9o_A RUVB-like 1; hexameric 98.9 1.9E-08 6.5E-13 90.7 13.1 130 46-203 296-438 (456)
79 1a5t_A Delta prime, HOLB; zinc 98.8 1.8E-07 6.2E-12 80.8 15.1 88 30-130 90-180 (334)
80 1sxj_E Activator 1 40 kDa subu 98.8 1.4E-07 5E-12 81.5 14.2 104 45-176 134-238 (354)
81 3f9v_A Minichromosome maintena 98.7 3.1E-08 1.1E-12 92.1 9.9 182 1-203 342-588 (595)
82 1ojl_A Transcriptional regulat 98.7 3.9E-08 1.3E-12 84.0 9.1 169 1-195 40-245 (304)
83 1w5s_A Origin recognition comp 98.7 1.2E-06 4.2E-11 76.9 19.0 139 45-202 138-293 (412)
84 2bjv_A PSP operon transcriptio 98.7 1.4E-07 4.9E-12 78.5 10.7 119 1-132 44-196 (265)
85 1sxj_C Activator 1 40 kDa subu 98.7 3.4E-07 1.2E-11 79.1 13.2 161 2-198 62-235 (340)
86 2gno_A DNA polymerase III, gam 98.6 3.6E-07 1.2E-11 78.1 11.3 110 2-130 34-152 (305)
87 1g41_A Heat shock protein HSLU 98.4 8.5E-06 2.9E-10 72.9 16.5 95 30-127 238-346 (444)
88 4akg_A Glutathione S-transfera 98.3 2.7E-06 9.3E-11 90.1 11.2 123 1-132 1282-1433(2695)
89 3n70_A Transport activator; si 98.3 7.1E-07 2.4E-11 67.6 5.2 94 1-116 39-143 (145)
90 3co5_A Putative two-component 98.2 1.7E-06 5.8E-11 65.4 5.0 94 1-116 42-141 (143)
91 3k1j_A LON protease, ATP-depen 98.1 2.5E-05 8.7E-10 72.6 12.2 138 46-201 202-374 (604)
92 3cmw_A Protein RECA, recombina 98.0 8.7E-06 3E-10 83.1 7.6 102 1-104 1097-1225(1706)
93 3f8t_A Predicted ATPase involv 97.9 0.00011 3.9E-09 66.0 12.7 141 46-204 301-485 (506)
94 1ny5_A Transcriptional regulat 97.9 0.00027 9.4E-09 62.0 13.8 170 2-198 176-383 (387)
95 1jr3_D DNA polymerase III, del 97.7 0.00069 2.4E-08 58.1 13.7 138 32-200 60-207 (343)
96 4akg_A Glutathione S-transfera 97.7 0.002 6.7E-08 68.8 19.4 110 2-128 661-791 (2695)
97 3dzd_A Transcriptional regulat 97.6 0.00058 2E-08 59.6 12.2 115 2-133 168-319 (368)
98 2r2a_A Uncharacterized protein 97.3 0.00035 1.2E-08 55.7 6.2 70 46-122 88-158 (199)
99 2kjq_A DNAA-related protein; s 97.1 0.002 6.8E-08 48.7 8.4 89 2-115 52-146 (149)
100 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.00062 2.1E-08 58.3 4.0 100 2-105 139-243 (331)
101 2fna_A Conserved hypothetical 96.7 0.0095 3.3E-07 50.5 10.1 118 33-176 124-251 (357)
102 2qen_A Walker-type ATPase; unk 96.6 0.035 1.2E-06 46.8 13.1 110 46-176 129-247 (350)
103 3vkg_A Dynein heavy chain, cyt 96.2 0.039 1.3E-06 59.8 12.7 110 2-128 620-751 (3245)
104 3ec2_A DNA replication protein 95.7 0.0079 2.7E-07 46.3 3.7 85 2-98 54-144 (180)
105 3vkg_A Dynein heavy chain, cyt 95.7 0.039 1.3E-06 59.8 9.9 120 4-132 1323-1471(3245)
106 4ag6_A VIRB4 ATPase, type IV s 93.8 1.1 3.9E-05 38.6 13.0 106 12-125 223-342 (392)
107 3cmu_A Protein RECA, recombina 93.2 0.19 6.4E-06 52.6 7.9 69 28-98 1489-1564(2050)
108 2w58_A DNAI, primosome compone 93.1 0.045 1.5E-06 42.7 2.5 54 2-58 70-128 (202)
109 2iut_A DNA translocase FTSK; n 91.7 0.56 1.9E-05 43.1 8.2 75 46-127 344-420 (574)
110 1svm_A Large T antigen; AAA+ f 88.0 0.092 3.2E-06 45.8 -0.2 98 1-116 184-284 (377)
111 2qgz_A Helicase loader, putati 85.7 0.17 5.9E-06 42.6 0.3 54 2-58 168-227 (308)
112 2ius_A DNA translocase FTSK; n 84.6 2.6 8.8E-05 38.2 7.5 74 46-128 297-375 (512)
113 1ye8_A Protein THEP1, hypothet 83.5 6.4 0.00022 29.9 8.5 67 41-119 96-165 (178)
114 1e9r_A Conjugal transfer prote 77.1 7.3 0.00025 33.9 7.7 74 45-132 279-362 (437)
115 2orw_A Thymidine kinase; TMTK, 70.4 7.4 0.00025 29.7 5.4 58 46-116 77-138 (184)
116 3cmu_A Protein RECA, recombina 67.7 8.7 0.0003 40.5 6.5 93 2-95 748-867 (2050)
117 1z6t_A APAF-1, apoptotic prote 66.7 27 0.00092 31.4 9.2 89 45-174 236-327 (591)
118 2ehv_A Hypothetical protein PH 64.2 15 0.0005 28.7 6.2 78 33-116 124-207 (251)
119 3bh0_A DNAB-like replicative h 58.6 68 0.0023 26.4 9.6 14 46-59 180-195 (315)
120 1g5t_A COB(I)alamin adenosyltr 53.1 36 0.0012 26.5 6.4 74 31-116 103-179 (196)
121 1tue_A Replication protein E1; 52.1 18 0.00062 28.6 4.5 29 88-117 148-179 (212)
122 1n0w_A DNA repair protein RAD5 51.3 44 0.0015 25.7 6.9 25 35-60 110-134 (243)
123 1xp8_A RECA protein, recombina 51.3 1.1E+02 0.0037 26.0 9.8 16 45-60 152-167 (366)
124 2yz2_A Putative ABC transporte 51.1 60 0.0021 26.1 7.8 53 37-100 149-201 (266)
125 2r6a_A DNAB helicase, replicat 50.7 1.1E+02 0.0037 26.6 10.0 17 43-60 312-328 (454)
126 2b8t_A Thymidine kinase; deoxy 48.1 58 0.002 25.6 7.1 67 34-115 75-150 (223)
127 1vec_A ATP-dependent RNA helic 47.0 18 0.00063 27.2 3.9 14 46-59 147-160 (206)
128 2d2e_A SUFC protein; ABC-ATPas 45.3 64 0.0022 25.6 7.0 51 39-100 156-206 (250)
129 1g6h_A High-affinity branched- 45.2 86 0.0029 25.0 7.8 53 37-100 164-216 (257)
130 4a1f_A DNAB helicase, replicat 45.1 32 0.0011 29.1 5.3 43 11-59 127-170 (338)
131 1e69_A Chromosome segregation 45.0 53 0.0018 27.1 6.8 43 45-98 241-283 (322)
132 4aby_A DNA repair protein RECN 44.8 74 0.0025 27.0 7.8 53 46-114 314-368 (415)
133 1t6n_A Probable ATP-dependent 43.9 41 0.0014 25.6 5.5 48 46-102 159-206 (220)
134 2oxc_A Probable ATP-dependent 43.5 25 0.00085 27.3 4.2 14 46-59 167-180 (230)
135 3kta_B Chromosome segregation 41.4 93 0.0032 23.3 7.1 54 46-115 87-140 (173)
136 1qde_A EIF4A, translation init 41.4 20 0.00067 27.5 3.3 14 46-59 156-169 (224)
137 2pjz_A Hypothetical protein ST 41.1 1.2E+02 0.004 24.4 8.0 50 37-100 139-188 (263)
138 3sfz_A APAF-1, apoptotic pepti 41.0 1.3E+02 0.0044 29.3 9.7 88 46-172 237-325 (1249)
139 2q6t_A DNAB replication FORK h 40.6 1.7E+02 0.0058 25.2 9.6 17 42-59 308-324 (444)
140 1wrb_A DJVLGB; RNA helicase, D 40.3 17 0.00059 28.7 2.8 14 46-59 175-188 (253)
141 3iuy_A Probable ATP-dependent 39.1 26 0.00089 27.0 3.7 14 46-59 168-181 (228)
142 2zu0_C Probable ATP-dependent 38.9 76 0.0026 25.5 6.6 51 39-100 177-227 (267)
143 2olj_A Amino acid ABC transpor 38.6 57 0.002 26.3 5.8 52 37-99 170-221 (263)
144 3hr8_A Protein RECA; alpha and 37.3 1.9E+02 0.0064 24.4 9.5 29 30-59 125-153 (356)
145 3gfo_A Cobalt import ATP-bindi 37.3 80 0.0027 25.6 6.5 55 37-101 154-208 (275)
146 2pcj_A ABC transporter, lipopr 36.5 66 0.0023 25.0 5.7 62 37-114 151-212 (224)
147 1b0u_A Histidine permease; ABC 36.0 57 0.0019 26.2 5.3 52 37-99 164-215 (262)
148 2w0m_A SSO2452; RECA, SSPF, un 35.5 69 0.0024 24.2 5.7 77 33-117 110-192 (235)
149 1vpl_A ABC transporter, ATP-bi 34.9 67 0.0023 25.7 5.6 52 37-99 157-208 (256)
150 2ff7_A Alpha-hemolysin translo 34.7 1E+02 0.0034 24.4 6.6 61 37-114 156-216 (247)
151 1ji0_A ABC transporter; ATP bi 34.2 59 0.002 25.6 5.1 51 37-98 150-200 (240)
152 3b0c_W CENP-W, centromere prot 34.1 87 0.003 20.0 5.0 36 171-206 39-74 (76)
153 2ixe_A Antigen peptide transpo 33.5 1.1E+02 0.0038 24.6 6.8 63 37-114 167-229 (271)
154 2ghi_A Transport protein; mult 33.1 1E+02 0.0035 24.6 6.5 59 39-114 168-226 (260)
155 3fe2_A Probable ATP-dependent 33.0 19 0.00064 28.3 1.9 14 46-59 177-190 (242)
156 2qv0_A Protein MRKE; structura 32.9 1.2E+02 0.004 20.7 9.4 56 76-132 72-127 (143)
157 2cvh_A DNA repair and recombin 32.0 85 0.0029 23.5 5.6 15 46-60 106-120 (220)
158 3bgw_A DNAB-like replicative h 31.9 2.5E+02 0.0087 24.3 9.4 15 46-60 309-325 (444)
159 2dr3_A UPF0273 protein PH0284; 31.7 1.5E+02 0.005 22.6 7.1 52 35-94 119-170 (247)
160 4gfq_A Ribosome-recycling fact 31.7 1.2E+02 0.0041 23.7 6.3 21 110-130 122-142 (209)
161 1taf_B TFIID TBP associated fa 31.1 80 0.0027 20.1 4.3 40 157-200 30-69 (70)
162 1q0u_A Bstdead; DEAD protein, 30.8 55 0.0019 24.9 4.3 14 46-59 151-164 (219)
163 3dkp_A Probable ATP-dependent 30.8 42 0.0014 26.1 3.7 51 46-102 176-226 (245)
164 1wqg_A Ribosome recycling fact 30.2 1.8E+02 0.0063 22.2 7.1 21 110-130 98-118 (185)
165 3auy_A DNA double-strand break 30.1 67 0.0023 27.1 5.0 53 46-114 306-358 (371)
166 1is1_A Ribosome recycling fact 29.9 1.9E+02 0.0064 22.1 7.1 21 110-130 98-118 (185)
167 2gxq_A Heat resistant RNA depe 29.8 33 0.0011 25.8 2.8 14 46-59 145-158 (207)
168 3bor_A Human initiation factor 29.0 40 0.0014 26.2 3.3 14 46-59 174-187 (237)
169 2ihy_A ABC transporter, ATP-bi 28.5 1.9E+02 0.0064 23.4 7.3 54 38-100 173-226 (279)
170 1dd5_A Ribosome recycling fact 28.3 1.7E+02 0.0058 22.4 6.5 21 110-130 98-118 (185)
171 2pl3_A Probable ATP-dependent 28.1 45 0.0015 25.7 3.4 14 46-59 172-185 (236)
172 2nq2_C Hypothetical ABC transp 28.1 1.3E+02 0.0044 23.9 6.2 53 37-99 139-191 (253)
173 1sgw_A Putative ABC transporte 28.0 54 0.0018 25.5 3.8 53 37-100 144-196 (214)
174 1ise_A Ribosome recycling fact 27.6 1.8E+02 0.0062 22.2 6.6 21 110-130 98-118 (185)
175 2cbz_A Multidrug resistance-as 26.9 1.1E+02 0.0037 24.0 5.5 55 37-100 138-192 (237)
176 3lda_A DNA repair protein RAD5 26.8 1E+02 0.0035 26.5 5.7 26 34-60 263-288 (400)
177 3eod_A Protein HNR; response r 26.7 1.4E+02 0.0049 19.8 6.8 46 87-132 81-126 (130)
178 1cr0_A DNA primase/helicase; R 26.7 97 0.0033 24.9 5.3 19 40-59 143-161 (296)
179 2ys9_A Homeobox and leucine zi 26.3 1E+02 0.0036 19.6 4.1 26 145-175 29-54 (70)
180 1w1w_A Structural maintenance 25.2 1.2E+02 0.0041 26.1 5.9 56 45-115 355-410 (430)
181 1id3_B Histone H4; nucleosome 25.0 94 0.0032 21.3 4.1 34 169-202 60-93 (102)
182 2yfw_B Histone H4, H4; cell cy 25.0 1E+02 0.0034 21.1 4.3 33 170-202 62-94 (103)
183 2db3_A ATP-dependent RNA helic 24.6 88 0.003 26.9 4.9 47 46-100 204-250 (434)
184 3tif_A Uncharacterized ABC tra 24.3 1.1E+02 0.0037 24.0 5.0 63 37-114 156-218 (235)
185 3b0c_T CENP-T, centromere prot 24.1 1.4E+02 0.0048 20.7 5.0 36 167-202 37-72 (111)
186 2i3b_A HCR-ntpase, human cance 24.1 1.4E+02 0.0049 22.4 5.5 13 45-57 105-117 (189)
187 3b85_A Phosphate starvation-in 23.9 53 0.0018 25.4 3.0 41 45-101 122-162 (208)
188 2a5y_B CED-4; apoptosis; HET: 23.8 3.8E+02 0.013 23.7 10.7 63 46-130 244-306 (549)
189 3dm5_A SRP54, signal recogniti 23.8 3.6E+02 0.012 23.5 11.9 161 28-203 166-341 (443)
190 1tzy_D Histone H4-VI; histone- 23.6 1E+02 0.0035 21.0 4.1 33 170-202 62-94 (103)
191 3io5_A Recombination and repai 23.4 1.7E+02 0.0058 24.7 6.2 19 41-60 108-126 (333)
192 3ber_A Probable ATP-dependent 23.3 50 0.0017 26.0 2.8 14 46-59 187-200 (249)
193 2i9e_A Triosephosphate isomera 23.3 2E+02 0.0069 23.2 6.4 72 7-81 82-153 (259)
194 1ney_A TIM, triosephosphate is 23.0 2.1E+02 0.0071 22.9 6.4 48 7-54 82-129 (247)
195 1f2t_B RAD50 ABC-ATPase; DNA d 23.0 2.1E+02 0.0073 20.5 7.5 60 40-115 77-136 (148)
196 4a74_A DNA repair and recombin 22.7 1.5E+02 0.005 22.3 5.5 74 42-117 123-200 (231)
197 1s2m_A Putative ATP-dependent 22.6 94 0.0032 25.8 4.6 13 46-58 164-176 (400)
198 3ly5_A ATP-dependent RNA helic 21.1 53 0.0018 26.1 2.6 14 46-59 202-215 (262)
199 3b6e_A Interferon-induced heli 21.0 77 0.0026 23.6 3.4 13 46-58 163-175 (216)
200 2zr9_A Protein RECA, recombina 20.7 1.4E+02 0.0049 24.9 5.3 20 39-59 134-153 (349)
201 3lhp_S 4E10_D0_1ISEA_004_N (T9 20.7 89 0.0031 22.3 3.3 23 108-130 34-56 (123)
202 4g1u_C Hemin import ATP-bindin 20.5 1.3E+02 0.0046 24.0 4.9 45 46-99 166-210 (266)
203 3rjz_A N-type ATP pyrophosphat 20.1 72 0.0025 25.5 3.1 47 2-55 54-100 (237)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-40 Score=294.60 Aligned_cols=189 Identities=21% Similarity=0.330 Sum_probs=167.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc--chHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI--SESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~--~~~~~~~l~~l 77 (242)
|||+|+|+++|++|+.++++++.++| |++++.++++|..|+..+ ||||||||+|+++++|...+. +....+++++|
T Consensus 197 llAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~a-P~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~l 275 (405)
T 4b4t_J 197 LLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLEL 275 (405)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTC-SEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHH
T ss_pred HHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhC-CceEeeecchhhccCCCCCCCCCcHHHHHHHHHH
Confidence 58999999999999999999999987 999999999999999998 999999999999998866543 34567899999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|| ....+|+||||||+|+.||||++ ||||++|+|++|+.++|.+||+.|++++++. .++|+
T Consensus 276 L~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-----------~dvdl- 343 (405)
T 4b4t_J 276 LNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-----------RGINL- 343 (405)
T ss_dssp HHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-----------SSCCH-
T ss_pred HHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-----------ccCCH-
Confidence 99997 45668999999999999999999 6999999999999999999999999875432 34666
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+.||+.|+||||+||+++|++|...+.......++.+||+.|+.++...
T Consensus 344 ---~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 344 ---RKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp ---HHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCc
Confidence 9999999999999999999966555555666689999999999998754
No 2
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-39 Score=289.80 Aligned_cols=195 Identities=19% Similarity=0.332 Sum_probs=170.0
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc--chHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI--SESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~--~~~~~~~l~~l 77 (242)
|||+|||++++++|+.++++++.++| |++++.++.+|..|+..+ ||||||||+|.++++|...+. .....+.+++|
T Consensus 258 lLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~a-P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~l 336 (467)
T 4b4t_H 258 LCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKK-ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLEL 336 (467)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTC-SEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHH
T ss_pred HHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcC-CceEeecccccccccccCcCCCccHHHHHHHHHH
Confidence 58999999999999999999999977 999999999999999998 999999999999999876543 34567888999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|+ ...++|+||+|||+|+.|||||+ ||||++|+|++|+.++|.+||+.|++++++. .++|+
T Consensus 337 L~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-----------~dvdl- 404 (467)
T 4b4t_H 337 ITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-----------RGIRW- 404 (467)
T ss_dssp HHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-----------SSCCH-
T ss_pred HHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-----------CCCCH-
Confidence 99997 44568999999999999999999 5999999999999999999999999875432 34666
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhhhhhh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVR 211 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 211 (242)
+.||+.|+||||+||+++|++|...+.......++.+||+.|+++++.+..++..
T Consensus 405 ---~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~~k~s~ 459 (467)
T 4b4t_H 405 ---ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSS 459 (467)
T ss_dssp ---HHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHCC---
T ss_pred ---HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCcccchh
Confidence 8999999999999999999977666666677789999999999999887655433
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-40 Score=289.55 Aligned_cols=189 Identities=19% Similarity=0.294 Sum_probs=167.5
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
|||+|||++++++|+.++++++.++| |++++.++.+|..|+..+ ||||||||+|+++++|...+ .+....+.+++|
T Consensus 231 lLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~a-P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~L 309 (437)
T 4b4t_I 231 LLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENA-PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLEL 309 (437)
T ss_dssp HHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTC-SEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcC-CcEEEEehhhhhcccCCCCCCCccHHHHHHHHHH
Confidence 58999999999999999999999977 999999999999999998 99999999999999986544 234577889999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|| ...++|+||+|||+|+.|||||+ ||||++|+|++|+.++|.+||+.|++++++. +++|+
T Consensus 310 L~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-----------~dvdl- 377 (437)
T 4b4t_I 310 LNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-----------EDVNL- 377 (437)
T ss_dssp HHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-----------SCCCH-
T ss_pred HHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-----------CcCCH-
Confidence 99997 45568999999999999999999 6999999999999999999999999875432 34666
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+.||+.|+|||||||+++|++|...+.......++.+||+.|++++...
T Consensus 378 ---~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 378 ---ETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp ---HHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred ---HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCC
Confidence 8999999999999999999976666666666789999999999988754
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-38 Score=285.73 Aligned_cols=189 Identities=22% Similarity=0.357 Sum_probs=166.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
|||+|||+++|++|+.++++++.++| |++++.++.+|..|+..+ ||||||||+|+++++|...+ .+....+++++|
T Consensus 230 llAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~-P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~l 308 (437)
T 4b4t_L 230 LLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHE-PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMEL 308 (437)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSC-SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcC-CceeeeecccccccccccCCCCcchHHHHHHHHH
Confidence 58999999999999999999999987 999999999999999998 99999999999999986654 234577889999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|+ ...++|+||+|||+|+.|||||+ ||||++|+||+|+.++|.+||+.|+++++.. .++|+
T Consensus 309 L~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-----------~d~dl- 376 (437)
T 4b4t_L 309 LTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-----------GEFDF- 376 (437)
T ss_dssp HHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-----------SCCCH-
T ss_pred HHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-----------cccCH-
Confidence 99997 34457999999999999999998 7899999999999999999999999875332 35666
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+.+|+.|+||||+||+++|++|...+.......++.+||..|++++...
T Consensus 377 ---~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 377 ---EAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp ---HHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred ---HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 8999999999999999999966555555666789999999999987643
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-39 Score=289.33 Aligned_cols=187 Identities=20% Similarity=0.336 Sum_probs=165.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccc--hHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS--ESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~--~~~~~~l~~l 77 (242)
|||+|+|+++|++|+.++++++.++| |++++.++.+|..|+..+ ||||||||+|+++++|...+.+ ....+.+++|
T Consensus 230 llAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~a-P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~l 308 (434)
T 4b4t_M 230 LLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKA-PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLEL 308 (434)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHC-SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcC-CeEEeecchhhhhhccCCCCCCCchHHHHHHHHH
Confidence 58999999999999999999999987 999999999999999998 9999999999999998765433 3467889999
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|+. ..++|+||||||+|+.||||++ ||||++|+||+|+.++|.+||+.|++++++. .++|+
T Consensus 309 L~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-----------~dvdl- 376 (434)
T 4b4t_M 309 LNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-----------DDINW- 376 (434)
T ss_dssp HHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-----------SCCCH-
T ss_pred HHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-----------CcCCH-
Confidence 999973 4567999999999999999998 6999999999999999999999999875432 34666
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
+.||+.|+||||+||+++|++|...+.......++.+||.+|+.++.
T Consensus 377 ---~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~ 423 (434)
T 4b4t_M 377 ---QELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQ 423 (434)
T ss_dssp ---HHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCS
T ss_pred ---HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 89999999999999999999776666666677899999999997764
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-37 Score=277.62 Aligned_cols=187 Identities=22% Similarity=0.308 Sum_probs=164.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
+||+|+|+++|++|+.++++++.++| |++++.++.+|..|+..+ ||||||||+|++++.|.... .+....+++++|
T Consensus 221 ~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~a-P~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~l 299 (428)
T 4b4t_K 221 MLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENA-PSIIFIDEVDSIATKRFDAQTGSDREVQRILIEL 299 (428)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTC-SEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcC-CCeeechhhhhhhccccCCCCCCChHHHHHHHHH
Confidence 58999999999999999999999877 999999999999999998 99999999999999985543 244577899999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeC-CCCHHHHHHHHHHHHhccccchhhhcccccccCCCCh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFP-LPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDY 152 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~-~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~ 152 (242)
|++|+ ....+|+||||||+|+.||||++ ||||++|+|| +|+.++|..||+.+++++++. .++|+
T Consensus 300 L~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-----------~~~dl 368 (428)
T 4b4t_K 300 LTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-----------PEADL 368 (428)
T ss_dssp HHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-----------TTCCH
T ss_pred HHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-----------cccCH
Confidence 99997 45567999999999999999999 6999999996 899999999999999875432 34666
Q ss_pred hHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 153 TSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 153 ~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
+.||..|+|||||||+++|++|...+.......++++||++|+...+
T Consensus 369 ----~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 369 ----DSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 415 (428)
T ss_dssp ----HHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHS
T ss_pred ----HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhh
Confidence 89999999999999999999766566666667899999999997764
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.7e-36 Score=286.94 Aligned_cols=188 Identities=20% Similarity=0.313 Sum_probs=125.1
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCC--ccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE--TISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~--~~~~~~~~~l~~l 77 (242)
|+|+|+|++++++|+.++++++.++| |++|++++++|..|+..+ ||||||||||+++++|+.. +.++...+++++|
T Consensus 526 ~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~-P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~l 604 (806)
T 3cf2_A 526 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQI 604 (806)
T ss_dssp HHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTC-SEEEECSCGGGCC--------------CHHHHHH
T ss_pred HHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcC-CceeechhhhHHhhccCCCCCCCchHHHHHHHHH
Confidence 58999999999999999999999987 999999999999999888 9999999999999998653 2345567899999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|| ....+|+||||||+|+.||+|++ ||||+.|+|++|+.++|.+||+.++++.++. .++|+
T Consensus 605 L~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-----------~~~dl- 672 (806)
T 3cf2_A 605 LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-----------KDVDL- 672 (806)
T ss_dssp HHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-----------CC----
T ss_pred HHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-----------CCCCH-
Confidence 99997 44567999999999999999999 5999999999999999999999999864332 34555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc-------------------------CCCccHHHHHHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASE-------------------------DGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~-------------------------~~~~~~~~~~~a~~~~~~ 204 (242)
+.||+.|+||||+||+++|++|...+.... ...++++||++|+..+..
T Consensus 673 ---~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 745 (806)
T 3cf2_A 673 ---EFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 745 (806)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC-----
T ss_pred ---HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCC
Confidence 899999999999999999996654443210 014788888888877754
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.98 E-value=2.2e-32 Score=260.11 Aligned_cols=185 Identities=22% Similarity=0.323 Sum_probs=157.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+|||++|+++|++|+.++++++.+++ |++++.++.+|+.|+.++ ||||||||||.++++|.+.+ ++..++++++||.
T Consensus 253 ~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~-PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~ 330 (806)
T 3cf2_A 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTH-GEVERRIVSQLLT 330 (806)
T ss_dssp HHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSC-SEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHT
T ss_pred HHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcC-CeEEEEehhcccccccCCCC-ChHHHHHHHHHHH
Confidence 58999999999999999999999876 999999999999999888 99999999999999987655 4456788999999
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
.|+ ...++|+||+|||+++.||++++ ||||+.|+|++|+.++|.+||+.+++++++. .++|+
T Consensus 331 ~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-----------~dvdl--- 396 (806)
T 3cf2_A 331 LMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-----------DDVDL--- 396 (806)
T ss_dssp HHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-----------TTCCH---
T ss_pred HHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-----------cccCH---
Confidence 997 34567999999999999999999 5999999999999999999999999864332 45666
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc-----------------CCCccHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYASE-----------------DGVLTEAMVMSKVEDS 202 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~~-----------------~~~~~~~~~~~a~~~~ 202 (242)
..||.+|+||+|+||.++|++|...+.... ...++.+||..|+...
T Consensus 397 -~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~ 459 (806)
T 3cf2_A 397 -EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp -HHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSS
T ss_pred -HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhC
Confidence 899999999999999999996654443221 1146677888777654
No 9
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=213.39 Aligned_cols=166 Identities=21% Similarity=0.342 Sum_probs=144.8
Q ss_pred ChHHHHHHhc-CCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 1 MFAKKLAHHS-GMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 1 llA~aiA~e~-~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
+||+++|+++ +.+|+.++++++.+++ |++++.++.+|..++..+ |+||||||+|.+++.+.... .+...+++++||
T Consensus 60 ~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll 137 (322)
T 1xwi_A 60 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK-PSIIFIDEIDSLCGSRSENE-SEAARRIKTEFL 137 (322)
T ss_dssp HHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTS-SEEEEEETTTGGGCCSSSCC-TTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcC-CcEEEeecHHHhcccccccc-chHHHHHHHHHH
Confidence 4899999999 8999999999999876 999999999999999887 99999999999999887654 455778899999
Q ss_pred HHhcc---CCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 79 YRTGE---QSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 79 ~~l~~---~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
..|+. ...+++||+|||+++.||+++++||+..+++++|+.++|.+||+.++.+.+.. ++ +.+
T Consensus 138 ~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~----------l~----~~~ 203 (322)
T 1xwi_A 138 VQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS----------LT----EAD 203 (322)
T ss_dssp HHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC----------CC----HHH
T ss_pred HHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC----------CC----HHH
Confidence 99963 45689999999999999999999999999999999999999999999764221 22 345
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~ 182 (242)
+..|++.|+||||+||.++|+.|...+
T Consensus 204 l~~la~~t~G~sgadl~~l~~~A~~~a 230 (322)
T 1xwi_A 204 FRELGRKTDGYSGADISIIVRDALMQP 230 (322)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHTHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 599999999999999999999665443
No 10
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=2.8e-29 Score=227.52 Aligned_cols=189 Identities=20% Similarity=0.297 Sum_probs=156.0
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCC--ccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE--TISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~--~~~~~~~~~l~~l 77 (242)
+||+++|+++++||+.++++++..++ |.++..++.+|..|+..+ ||||||||+|.+.++++.. +......+.+++|
T Consensus 64 ~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~-p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~L 142 (476)
T 2ce7_A 64 LLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHA-PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQL 142 (476)
T ss_dssp HHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTC-SEEEEEETGGGTCCC---------CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcC-CCEEEEechhhhhhhcccccCcCcHHHHHHHHHH
Confidence 48999999999999999999999866 889999999999999887 9999999999999887642 2233456788999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|..|+ ....+++||+|||+++.||++++ +|||+.|+|++|+.++|.+||+.++++.++. +++++
T Consensus 143 L~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-----------~~v~l- 210 (476)
T 2ce7_A 143 LVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-----------EDVNL- 210 (476)
T ss_dssp HHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-----------TTCCH-
T ss_pred HHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-----------chhhH-
Confidence 99996 33457999999999999999998 6999999999999999999999999864322 34555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
..++..|+||+|+||.++|+.|...+.......++.+++..++.++..+
T Consensus 211 ---~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 211 ---EIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp ---HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred ---HHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhcC
Confidence 7899999999999999999955544444445689999999999988654
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.96 E-value=1.7e-28 Score=212.69 Aligned_cols=166 Identities=22% Similarity=0.333 Sum_probs=139.8
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+||+++|++++.+|+.++++++.+++ |++++.++.+|..++... |+||||||+|.+.+.+.... .....+++++||.
T Consensus 66 ~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~ 143 (322)
T 3eie_A 66 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENK-PSIIFIDQVDALTGTRGEGE-SEASRRIKTELLV 143 (322)
T ss_dssp HHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTS-SEEEEEECGGGGSCC-------CCTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcC-CeEEEechhhhhhccCCCCc-chHHHHHHHHHHH
Confidence 48999999999999999999998866 999999999999999887 99999999999998875543 3345677888888
Q ss_pred Hhc---cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhH
Q psy4165 80 RTG---EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLC 156 (242)
Q Consensus 80 ~l~---~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l 156 (242)
.|+ ....+++||+|||+++.||+++++||+..+++++|+.++|.+||+.++.+.+.. ++ +.++
T Consensus 144 ~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~----------~~----~~~l 209 (322)
T 3eie_A 144 QMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV----------LT----KEDY 209 (322)
T ss_dssp HHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC----------CC----HHHH
T ss_pred HhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC----------CC----HHHH
Confidence 886 356689999999999999999999999999999999999999999999863221 22 3455
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy4165 157 SKIAHVTEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 157 ~~la~~t~g~s~adi~~lv~~a~~~~ 182 (242)
..|++.|+||+|+||.++|+.|...+
T Consensus 210 ~~la~~t~g~sg~di~~l~~~a~~~a 235 (322)
T 3eie_A 210 RTLGAMTEGYSGSDIAVVVKDALMQP 235 (322)
T ss_dssp HHHHHTTTTCCHHHHHHHHHHHTTHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999998664443
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.96 E-value=7.4e-28 Score=211.52 Aligned_cols=168 Identities=21% Similarity=0.325 Sum_probs=138.0
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+||+++|++++.+|+.++++++.+++ |++++.++.+|..++... |+||||||+|.+.+.+.... .....+++++||.
T Consensus 99 ~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~~~~-~~~~~~~~~~ll~ 176 (355)
T 2qp9_X 99 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENK-PSIIFIDQVDALTGTRGEGE-SEASRRIKTELLV 176 (355)
T ss_dssp HHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTS-SEEEEEECGGGGTC-------CTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcC-CeEEEEechHhhcccCCCCc-chHHHHHHHHHHH
Confidence 48999999999999999999998866 899999999999999887 99999999999998876543 4556778889999
Q ss_pred Hhc---cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhH
Q psy4165 80 RTG---EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLC 156 (242)
Q Consensus 80 ~l~---~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l 156 (242)
.|+ ....+++||+|||+++.||+++++||+..+++++|+.++|.+||+.++.+.+.. ++ +.++
T Consensus 177 ~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~----------~~----~~~l 242 (355)
T 2qp9_X 177 QMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV----------LT----KEDY 242 (355)
T ss_dssp HHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC----------CC----HHHH
T ss_pred HhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC----------CC----HHHH
Confidence 886 335679999999999999999999999999999999999999999999864221 22 3455
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q psy4165 157 SKIAHVTEGLSGREIAKLGVAWQASAYA 184 (242)
Q Consensus 157 ~~la~~t~g~s~adi~~lv~~a~~~~~~ 184 (242)
..|++.|+||+|+||.++|+.|...++.
T Consensus 243 ~~la~~t~G~sg~dl~~l~~~A~~~a~~ 270 (355)
T 2qp9_X 243 RTLGAMTEGYSGSDIAVVVKDALMQPIR 270 (355)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999976655543
No 13
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=202.13 Aligned_cols=187 Identities=21% Similarity=0.296 Sum_probs=147.5
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+|+++||++++.+++.+++.++.+++ |++++.++.+|+.++... |||+|+||+|.++..+.... .+...+.+++++.
T Consensus 59 tLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~-p~i~~~Deid~~~~~r~~~~-~~~~~~~~~~~l~ 136 (274)
T 2x8a_A 59 LLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSA-PCVIFFDEVDALCPRRSDRE-TGASVRVVNQLLT 136 (274)
T ss_dssp HHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTC-SEEEEEETCTTTCC----------CTTHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcC-CCeEeeehhhhhhcccCCCc-chHHHHHHHHHHH
Confidence 48999999999999999999998865 899999999999998777 99999999999987664432 2223467788999
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccc-cCCCChhH
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLK-VAPFDYTS 154 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~-~~~~d~~~ 154 (242)
+|+ .....++++++||+|+.||++++ ||||+.|++++|+.++|.+||+.+++... ..+ ..++|+
T Consensus 137 ~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~---------~~~~~~~~~~-- 205 (274)
T 2x8a_A 137 EMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGT---------KPPLDADVNL-- 205 (274)
T ss_dssp HHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTB---------TTBBCTTCCH--
T ss_pred hhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhccc---------CCCCccccCH--
Confidence 986 34556899999999999999999 59999999999999999999999986411 122 235666
Q ss_pred hHHHHHHhC--CCCCHHHHHHHHHHHHHHHhhh-----------cCCCccHHHHHHHHHHH
Q psy4165 155 LCSKIAHVT--EGLSGREIAKLGVAWQASAYAS-----------EDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 155 ~l~~la~~t--~g~s~adi~~lv~~a~~~~~~~-----------~~~~~~~~~~~~a~~~~ 202 (242)
..+|..| +||||+||.++|++|...+... ....++.+||++|+..+
T Consensus 206 --~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 264 (274)
T 2x8a_A 206 --EAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKV 264 (274)
T ss_dssp --HHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTC
T ss_pred --HHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHh
Confidence 8999875 4999999999999665444322 12268999999998765
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=1.2e-26 Score=194.56 Aligned_cols=188 Identities=24% Similarity=0.350 Sum_probs=157.9
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
+||+++|++++.|++.++++++.+.+ |++++.++.+|+.+.... |+++||||+|.+...+.... ......+.++.+
T Consensus 60 ~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~l 138 (257)
T 1lv7_A 60 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAA-PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQM 138 (257)
T ss_dssp HHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTC-SEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcC-CeeehhhhhhhhccCCCCCcCCCchHHHHHHHHH
Confidence 48999999999999999999998765 888899999999999777 99999999999998765421 233455778899
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHhc--ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVND--RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~~--Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|..++. ...+++||+|||+++.+|+++++ ||++.+++++|+.++|.+||+.++.+.++. .+.++
T Consensus 139 l~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-----------~~~~~- 206 (257)
T 1lv7_A 139 LVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-----------PDIDA- 206 (257)
T ss_dssp HHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-----------TTCCH-
T ss_pred HHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-----------ccccH-
Confidence 998863 35579999999999999999994 999999999999999999999999764332 23444
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~ 204 (242)
..++..++||+++||.++|+.|...+.......++.+++.+++..+..
T Consensus 207 ---~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 207 ---AIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp ---HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTT
T ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhc
Confidence 789999999999999999996666555555678999999999987753
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=4.1e-26 Score=193.78 Aligned_cols=191 Identities=23% Similarity=0.346 Sum_probs=163.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc--chHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI--SESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~--~~~~~~~l~~l 77 (242)
+||+++|++++.+++.++++++.+.+ |+.+..++.+|..++... |+||||||+|.+++++.+... .......+..+
T Consensus 66 ~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~l 144 (285)
T 3h4m_A 66 LLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKA-PSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQL 144 (285)
T ss_dssp HHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTC-SEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcC-CeEEEEECHHHhcccCccccCCccHHHHHHHHHH
Confidence 48999999999999999999998765 899999999999999887 999999999999988765432 33456777888
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHhc--ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVND--RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~~--Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
+..++ ....+++||+|||.++.+|+++++ ||+..+++++|+.++|.+||+.++...... .+.++
T Consensus 145 l~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-----------~~~~~- 212 (285)
T 3h4m_A 145 LAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-----------EDVNL- 212 (285)
T ss_dssp HHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-----------TTCCH-
T ss_pred HHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-----------CcCCH-
Confidence 88885 445679999999999999999996 999999999999999999999998764322 23444
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHK 207 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 207 (242)
..++..+.||+++||+.+|+.|...+.......++.+++.+++..+.....
T Consensus 213 ---~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~~~ 263 (285)
T 3h4m_A 213 ---EEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKKK 263 (285)
T ss_dssp ---HHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhccc
Confidence 899999999999999999997777777777778999999999999876543
No 16
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.95 E-value=5e-27 Score=211.93 Aligned_cols=166 Identities=22% Similarity=0.349 Sum_probs=137.1
Q ss_pred ChHHHHHHhc-CCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 1 MFAKKLAHHS-GMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 1 llA~aiA~e~-~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
+||+++|+++ +.+|+.++++++.+++ |+++..++.+|..++... |+||||||+|.+++.+.... .+...+++++||
T Consensus 182 ~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~lL 259 (444)
T 2zan_A 182 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK-PSIIFIDEIDSLCGSRSENE-SEAARRIKTEFL 259 (444)
T ss_dssp HHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSC-SEEEEESCTTTTCCCSSCCC-CGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcC-CeEEEEechHhhccCCCCcc-ccHHHHHHHHHH
Confidence 4899999999 8999999999998876 888999999999999887 99999999999998876654 455678889999
Q ss_pred HHhcc---CCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 79 YRTGE---QSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 79 ~~l~~---~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
..|+. ...+++||+|||+++.||+++++||+..+++++|+.++|..||+.++.+.+. .++ +.+
T Consensus 260 ~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----------~l~----~~~ 325 (444)
T 2zan_A 260 VQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN----------SLT----EAD 325 (444)
T ss_dssp TTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE----------ECC----HHH
T ss_pred HHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC----------CCC----HHH
Confidence 99874 4568999999999999999999999999999999999999999999976422 122 345
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~ 182 (242)
+..|+..|+||||+||.++|+.|...+
T Consensus 326 l~~la~~t~G~sgadl~~l~~~a~~~a 352 (444)
T 2zan_A 326 FQELGRKTDGYSGADISIIVRDALMQP 352 (444)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 599999999999999999999665433
No 17
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.95 E-value=2.7e-27 Score=203.44 Aligned_cols=167 Identities=22% Similarity=0.363 Sum_probs=140.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
+||+++|++++.+++.++++++.+++ |++++.++.+|..|+... |+||||||+|.+.+.++... ..+...+++++|
T Consensus 64 ~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~l 142 (301)
T 3cf0_A 64 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQI 142 (301)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTC-SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcC-CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHH
Confidence 48999999999999999999998765 888999999999999887 99999999999998765432 122345677888
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHhc--ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVND--RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~~--Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|..|+ ....+++||+|||+++.||+++++ ||+..+++++|+.++|.+||+.++++.+.. .++++
T Consensus 143 L~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-----------~~~~~- 210 (301)
T 3cf0_A 143 LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-----------KDVDL- 210 (301)
T ss_dssp HHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-----------SSCCH-
T ss_pred HHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-----------ccchH-
Confidence 88886 345579999999999999999984 999999999999999999999999864321 34555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAY 183 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~ 183 (242)
..++..|.||+|+||+++|+.|...+.
T Consensus 211 ---~~la~~~~g~sg~dl~~l~~~a~~~a~ 237 (301)
T 3cf0_A 211 ---EFLAKMTNGFSGADLTEICQRACKLAI 237 (301)
T ss_dssp ---HHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999996654443
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.94 E-value=4.2e-26 Score=207.84 Aligned_cols=190 Identities=21% Similarity=0.307 Sum_probs=159.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
++|++||++++.+|+.++++++.+.+ |+.+..++.+|..|.... |+||||||||.+.++++... .+...++++.||.
T Consensus 253 ~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~-p~iLfLDEId~l~~~~~~~~-~~~~~~~~~~LL~ 330 (489)
T 3hu3_A 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTH-GEVERRIVSQLLT 330 (489)
T ss_dssp HHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTC-SEEEEEESHHHHCBCTTSCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcC-CcEEEecchhhhcccccccc-chHHHHHHHHHHH
Confidence 48999999999999999999998865 999999999999999887 99999999999999876544 4456678888988
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
.|+ ....+++||+|||+++.||++++ +||+..|+|++|+.++|.+||+.++..+++. .+.++
T Consensus 331 ~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-----------~~~~l--- 396 (489)
T 3hu3_A 331 LMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-----------DDVDL--- 396 (489)
T ss_dssp HHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-----------TTCCH---
T ss_pred HhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-----------chhhH---
Confidence 886 45567999999999999999999 4999999999999999999999998764332 23455
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCC-----------------CccHHHHHHHHHHHHHhhh
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYASEDG-----------------VLTEAMVMSKVEDSIRAHK 207 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~-----------------~~~~~~~~~a~~~~~~~~~ 207 (242)
..++..+.||+++||.++|+.|...+...... .++.+++..|+..+.....
T Consensus 397 -~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~ 464 (489)
T 3hu3_A 397 -EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (489)
T ss_dssp -HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHH
T ss_pred -HHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhh
Confidence 89999999999999999999665555433211 4899999999988765543
No 19
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.94 E-value=2.7e-26 Score=192.25 Aligned_cols=196 Identities=24% Similarity=0.325 Sum_probs=146.8
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc---chHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI---SESLRATLNA 76 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~---~~~~~~~l~~ 76 (242)
++|+++|++++.+++.++++++.+.+ |.++..++.+|..+.... |+||||||+|.++.++..... .......++.
T Consensus 54 ~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ 132 (262)
T 2qz4_A 54 LLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARA-PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQ 132 (262)
T ss_dssp HHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTC-SEEEEEECC-------------------CHHHHH
T ss_pred HHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcC-CeEEEEeCcchhhccccccccCccchhHHHHHHH
Confidence 47999999999999999999998866 888999999999999887 999999999999887654321 2234466788
Q ss_pred HHHHhcc--CCCCeEEEEecCCcccccHHHhc--ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCCh
Q psy4165 77 FLYRTGE--QSDKFMLVLASNTPQQFDWAVND--RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDY 152 (242)
Q Consensus 77 lL~~l~~--~~~~v~vI~tTn~~~~ld~al~~--Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~ 152 (242)
||..++. ...++++|+|||.++.+|+++++ ||+..++|++|+.++|.+||+.++.+.+... +.
T Consensus 133 ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~-------------~~ 199 (262)
T 2qz4_A 133 LLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ-------------SS 199 (262)
T ss_dssp HHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB-------------TH
T ss_pred HHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc-------------ch
Confidence 8888863 45579999999999999999996 9999999999999999999999998754321 11
Q ss_pred hHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhhhhh
Q psy4165 153 TSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKV 210 (242)
Q Consensus 153 ~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 210 (242)
+..+..++..+.||+|+||.++|+.|...+.......++.+++..++.++..+..++.
T Consensus 200 ~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~~~~ 257 (262)
T 2qz4_A 200 TFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTAKKS 257 (262)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHHHHHHCC-
T ss_pred hhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccChhhhh
Confidence 3345789999999999999999996555555455568999999999999887655443
No 20
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.94 E-value=8.9e-27 Score=212.21 Aligned_cols=189 Identities=23% Similarity=0.307 Sum_probs=157.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCC--ccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE--TISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~--~~~~~~~~~l~~l 77 (242)
+||++||++++.+++.++++++.+.+ |.....++.+|+.++... |||+||||||.+...++.. .......+.++++
T Consensus 79 tLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~-p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~L 157 (499)
T 2dhr_A 79 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL 157 (499)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSS-SCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcC-CCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHH
Confidence 48999999999999999999998865 888899999999998776 9999999999998877542 1234566788999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|..|+ .....+++|++||+|+.||++++ +|||+.|+|++|+.++|.+||+.+++++++ .+++++
T Consensus 158 L~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l-----------~~dv~l- 225 (499)
T 2dhr_A 158 LVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-----------AEDVDL- 225 (499)
T ss_dssp HHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC-----------CCSSTT-
T ss_pred HHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCC-----------ChHHHH-
Confidence 99997 33456899999999999999999 599999999999999999999998865322 134555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
..+|..|+||+|+||+++|++|...+.......++.+++..++.++..+
T Consensus 226 ---~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 226 ---ALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp ---HHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTC
T ss_pred ---HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcc
Confidence 8899999999999999999944433333344589999999999988755
No 21
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.94 E-value=5.8e-25 Score=193.18 Aligned_cols=188 Identities=22% Similarity=0.304 Sum_probs=154.0
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+||+++|++++++|+.++++++.+++ |+++..++.+|..+.... |+||||||+|.+++.+.... .....+++++||.
T Consensus 132 ~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~lL~ 209 (357)
T 3d8b_A 132 LIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQ-PAVIFIDEIDSLLSQRGDGE-HESSRRIKTEFLV 209 (357)
T ss_dssp HHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTC-SEEEEEETHHHHTBC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcC-CeEEEEeCchhhhccCCCCc-chHHHHHHHHHHH
Confidence 48999999999999999999999876 899999999999999877 99999999999998775543 4456778888998
Q ss_pred Hhcc----CCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTGE----QSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~~----~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
.++. ...+++||+|||+++.||+++++||+..+++++|+.++|.+|++.++.+.+. .++ +..
T Consensus 210 ~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~----------~l~----~~~ 275 (357)
T 3d8b_A 210 QLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC----------CLS----EEE 275 (357)
T ss_dssp HHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB----------CCC----HHH
T ss_pred HHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC----------Ccc----HHH
Confidence 8862 3467999999999999999999999999999999999999999999876321 122 345
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhh------------cCCCccHHHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYAS------------EDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~------------~~~~~~~~~~~~a~~~~~~ 204 (242)
++.+++.++||+|+||..+|+.|...+... ....++.+++..++..+..
T Consensus 276 l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 276 IEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGG
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCC
Confidence 589999999999999999999664444331 2247999999999987753
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.92 E-value=3.1e-24 Score=179.53 Aligned_cols=183 Identities=23% Similarity=0.314 Sum_probs=146.5
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCC--ccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE--TISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~--~~~~~~~~~l~~l 77 (242)
+|+++||++++.+++.+++.++.+.+ +...+.+..+|+.+.... |+++|+||+|.++..+... .......+.++++
T Consensus 64 tl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l 142 (254)
T 1ixz_A 64 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL 142 (254)
T ss_dssp HHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSS-SEEEEEETHHHHHC---------CHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcC-CeEEEehhhhhhhcccCccccccchHHHHHHHHH
Confidence 48999999999999999998887654 788889999999998766 9999999999998766532 1234456778899
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHhc--ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVND--RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~~--Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
+..|+ .....++++++||+|+.||+++++ ||+..+++++|+.++|.+||+.+++..++ .++.++
T Consensus 143 l~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-----------~~~~~~- 210 (254)
T 1ixz_A 143 LVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-----------AEDVDL- 210 (254)
T ss_dssp HHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCB-----------CTTCCH-
T ss_pred HHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCC-----------CcccCH-
Confidence 98886 334458899999999999999994 99999999999999999999998865322 134555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
..+|..++||+|+||+++|+.|...+.......++.+++++++
T Consensus 211 ---~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 211 ---ALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp ---HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 8899999999999999999965554444445689999998875
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.92 E-value=3.7e-24 Score=182.83 Aligned_cols=186 Identities=23% Similarity=0.327 Sum_probs=148.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
++|+++|++++++|+.++++++.+.+ |+++..++.+|..+.... |+||||||+|.++..+.... .....+..+.||.
T Consensus 69 ~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~ 146 (297)
T 3b9p_A 69 LLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQ-PSIIFIDEVDSLLSERSSSE-HEASRRLKTEFLV 146 (297)
T ss_dssp HHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTC-SEEEEEETGGGTSBCC------CCSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcC-CcEEEeccHHHhccccccCc-chHHHHHHHHHHH
Confidence 48999999999999999999998865 889999999999999877 99999999999998775533 2223556777887
Q ss_pred HhccC-----CCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhH
Q psy4165 80 RTGEQ-----SDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTS 154 (242)
Q Consensus 80 ~l~~~-----~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~ 154 (242)
.++.. ..+++||++||+++.+|+++++||+..+++++|+.++|..||+.++.+.+. .++ +.
T Consensus 147 ~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~----------~~~----~~ 212 (297)
T 3b9p_A 147 EFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS----------PLD----TE 212 (297)
T ss_dssp HHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC----------CSC----HH
T ss_pred HHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC----------CCC----HH
Confidence 77532 256999999999999999999999999999999999999999999976321 122 34
Q ss_pred hHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc------------CCCccHHHHHHHHHHH
Q psy4165 155 LCSKIAHVTEGLSGREIAKLGVAWQASAYASE------------DGVLTEAMVMSKVEDS 202 (242)
Q Consensus 155 ~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~------------~~~~~~~~~~~a~~~~ 202 (242)
.+..+++.+.||+++||.++|+.+...+.... ...++.+++..|+...
T Consensus 213 ~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 213 ALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHc
Confidence 55899999999999999999986544433321 2468999998887654
No 24
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.92 E-value=4.4e-24 Score=189.49 Aligned_cols=186 Identities=21% Similarity=0.279 Sum_probs=142.5
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+||++||++++.+|+.++++++.+.+ |+.+..++.+|..++... |+||||||||.++..+.... .....++++.||.
T Consensus 163 ~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~-~~il~iDEid~l~~~~~~~~-~~~~~~~~~~ll~ 240 (389)
T 3vfd_A 163 MLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQ-PSIIFIDQVDSLLCERREGE-HDASRRLKTEFLI 240 (389)
T ss_dssp HHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSS-SEEEEEETGGGGC---------CTHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcC-CeEEEEECchhhcccCCCcc-chHHHHHHHHHHH
Confidence 48999999999999999999998865 889999999999999887 99999999999988765433 3345677788888
Q ss_pred Hhc----cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG----EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~----~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
.++ ....+++||+|||+++.||+++++||+..++|++|+.++|.+||+.++.+.+. .+. +..
T Consensus 241 ~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~----------~l~----~~~ 306 (389)
T 3vfd_A 241 EFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS----------PLT----QKE 306 (389)
T ss_dssp HHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC----------CSC----HHH
T ss_pred HhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC----------CCC----HHH
Confidence 875 23567999999999999999999999999999999999999999999876321 122 345
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhh------------cCCCccHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYAS------------EDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~------------~~~~~~~~~~~~a~~~~ 202 (242)
+..++..+.||+++||..||+.+...+... ....++.+++..++...
T Consensus 307 ~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 307 LAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHc
Confidence 589999999999999999998554443332 22378999999888754
No 25
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.91 E-value=4.1e-23 Score=175.17 Aligned_cols=183 Identities=23% Similarity=0.315 Sum_probs=146.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCC--ccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE--TISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~--~~~~~~~~~l~~l 77 (242)
+|+++||+.++.+++.+++.++...+ +...+.+..+|+.+.... |+++|+||+|.+...+... .........++++
T Consensus 88 tl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l 166 (278)
T 1iy2_A 88 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL 166 (278)
T ss_dssp HHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSC-SEEEEEETHHHHHCC--------CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcC-CcEEehhhhHhhhcccccccCCcchHHHHHHHHH
Confidence 47999999999999999998887654 778888999999998776 9999999999998765431 1233456778889
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
+..++ .....++++++||+|+.||++++ +||+..++|++|+.++|.+||+.++...++ .+++++
T Consensus 167 l~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-----------~~~~~~- 234 (278)
T 1iy2_A 167 LVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-----------AEDVDL- 234 (278)
T ss_dssp HHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCB-----------CTTCCH-
T ss_pred HHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCC-----------CcccCH-
Confidence 98886 33445889999999999999999 499999999999999999999998865322 123455
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
..++..++||+++||+++|+.|...+.......++.+++++++
T Consensus 235 ---~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 235 ---ALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp ---HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 8899999999999999999955544444445689999998875
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.90 E-value=4.3e-26 Score=192.13 Aligned_cols=189 Identities=22% Similarity=0.326 Sum_probs=145.8
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc---cchHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET---ISESLRATLNA 76 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~---~~~~~~~~l~~ 76 (242)
+||+++|++++.+++.++++++.+.+ |.++..++.+|..+.... |+||||||+|.+...+...+ ......+.++.
T Consensus 59 ~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ 137 (268)
T 2r62_A 59 LLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQA-PSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQ 137 (268)
T ss_dssp HHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSC-SCEEEESCGGGTTC----------CCCSCSSTTT
T ss_pred HHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcC-CeEEEEeChhhhcccccccccCCCchhHHHHHHH
Confidence 48999999999999999999998765 777778889999999877 99999999999988764321 01112234567
Q ss_pred HHHHhcc---CCCCeEEEEecCCcccccHHHhc--ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 77 FLYRTGE---QSDKFMLVLASNTPQQFDWAVND--RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 77 lL~~l~~---~~~~v~vI~tTn~~~~ld~al~~--Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
||..++. ...+++||+|||.++.+|+++++ ||+..++|++|+.++|.+||+.++..+++. .+.+
T Consensus 138 ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-----------~~~~ 206 (268)
T 2r62_A 138 LLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-----------NDVN 206 (268)
T ss_dssp TTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-----------SSCC
T ss_pred HHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-----------CccC
Confidence 7777753 33458999999999999999995 999999999999999999999998764322 3345
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+ +.++..+.||+|+||+++|+.|...+.......++.+++..++......
T Consensus 207 ~----~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 256 (268)
T 2r62_A 207 L----QEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAG 256 (268)
T ss_dssp T----TTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTCCCC
T ss_pred H----HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHhhc
Confidence 5 6789999999999999999854444433345589999998887655433
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.89 E-value=3.8e-25 Score=212.42 Aligned_cols=167 Identities=22% Similarity=0.363 Sum_probs=140.9
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
+||++||++++.+++.++++++.++| |++++.++.+|+.|+... ||||||||||.++..|+... ..+...+++++|
T Consensus 526 ~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~-p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~L 604 (806)
T 1ypw_A 526 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQI 604 (806)
T ss_dssp HHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHC-SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcC-CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHH
Confidence 48999999999999999999999876 999999999999999888 99999999999999886543 234567889999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHhc--ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVND--RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~~--Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|..|+ ....+++||+|||+++.||+++++ ||+..|+|++|+.++|.+||+.++++.++ ..++++
T Consensus 605 L~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~-----------~~~~~l- 672 (806)
T 1ypw_A 605 LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-----------AKDVDL- 672 (806)
T ss_dssp HTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC---------------CCCC-
T ss_pred HHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCC-----------CcccCH-
Confidence 99997 345579999999999999999995 99999999999999999999999986433 234555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAY 183 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~ 183 (242)
+.+++.++||||+||+++|+.|...+.
T Consensus 673 ---~~la~~t~g~sgadi~~l~~~a~~~a~ 699 (806)
T 1ypw_A 673 ---EFLAKMTNGFSGADLTEICQRACKLAI 699 (806)
T ss_dssp ---SCSCGGGSSSCCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHhccccCHHHHHHHHHHHHHHHH
Confidence 789999999999999999995544443
No 28
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.86 E-value=2.8e-22 Score=171.61 Aligned_cols=152 Identities=13% Similarity=0.202 Sum_probs=113.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHH----HhCCCcEEEEEecccccccccCCCcc-chHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWA----SSSRKGLVLFIDEADAFLRKRSSETI-SESLRATL 74 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A----~~~~~p~Il~iDeiD~l~~~r~~~~~-~~~~~~~l 74 (242)
+||++||+++|.+|+.++++++.+.+ |+++..++++|..| +... ||||||||||.+++.+.+... ....+.+.
T Consensus 51 ~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~-~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~ 129 (293)
T 3t15_A 51 FQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGN-MCCLFINDLDAGAGRMGGTTQYTVNNQMVN 129 (293)
T ss_dssp HHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSS-CCCEEEECCC--------------CHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCC-CeEEEEechhhhcCCCCCCccccchHHHHH
Confidence 48999999999999999999998866 99999999999999 4455 999999999999986543221 12234555
Q ss_pred HHHHHHhc-------------cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhh
Q psy4165 75 NAFLYRTG-------------EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAA 139 (242)
Q Consensus 75 ~~lL~~l~-------------~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~ 139 (242)
+.|+..|+ ....+++||+|||+++.||++++ +||+..|+ .|+.++|.+|++.++..
T Consensus 130 ~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~------- 200 (293)
T 3t15_A 130 ATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRT------- 200 (293)
T ss_dssp HHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGG-------
T ss_pred HHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccC-------
Confidence 67777664 13457999999999999999999 69998887 47999999999988864
Q ss_pred hcccccccCCCChhHhHHHHHHhCCCCCHHHHHHH
Q psy4165 140 QGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKL 174 (242)
Q Consensus 140 ~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~l 174 (242)
.+++. +.+++.++||+++||..+
T Consensus 201 --------~~~~~----~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 201 --------DNVPA----EDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp --------GCCCH----HHHHHHHHHSCSCCHHHH
T ss_pred --------CCCCH----HHHHHHhCCCCcccHHHH
Confidence 23444 889999999999999754
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.80 E-value=7e-19 Score=169.02 Aligned_cols=166 Identities=23% Similarity=0.369 Sum_probs=141.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+||++||++++.+++.++++++.+++ |+.+..++.+|+.+.... |+|+||||+|.+++++.... .....+++..|+.
T Consensus 253 tLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~-~~~~~~~~~~Ll~ 330 (806)
T 1ypw_A 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTH-GEVERRIVSQLLT 330 (806)
T ss_dssp HHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHC-SEEEEEESGGGTSCTTSCCC-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcC-CcEEEeccHHHhhhcccccc-chHHHHHHHHHHH
Confidence 48999999999999999999998866 899999999999999887 99999999999999876543 3445677788888
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
.++ .....+++|+|||+++.+|+++. +||+..++++.|+.++|.+||+.++.++.+ ..+.++
T Consensus 331 ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l-----------~~~~~l--- 396 (806)
T 1ypw_A 331 LMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-----------ADDVDL--- 396 (806)
T ss_dssp HHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCC-----------CTTCCT---
T ss_pred HhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCC-----------cccchh---
Confidence 886 33457999999999999999999 499999999999999999999999876432 234555
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAY 183 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~ 183 (242)
..++..+.||+++|+..++..+...+.
T Consensus 397 -~~la~~t~g~~g~dl~~l~~ea~~~a~ 423 (806)
T 1ypw_A 397 -EQVANETHGHVGADLAALCSEAALQAI 423 (806)
T ss_dssp -HHHHHSCSSCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHhhcCcchHHHHHHHHHHHHHHH
Confidence 899999999999999999986544433
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.70 E-value=8.9e-20 Score=165.02 Aligned_cols=150 Identities=13% Similarity=0.151 Sum_probs=100.2
Q ss_pred ChHHHHHHhcC--CcEEEEecCCccccc-chHHHHHHHHHHHH---HhCCCcEEEEEecccccccccCCCccchH---HH
Q psy4165 1 MFAKKLAHHSG--MDYAIMTGGDVAPMG-SSGVTAIHKVFDWA---SSSRKGLVLFIDEADAFLRKRSSETISES---LR 71 (242)
Q Consensus 1 llA~aiA~e~~--~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A---~~~~~p~Il~iDeiD~l~~~r~~~~~~~~---~~ 71 (242)
++|+++|++++ ++|+.++++++.+++ |+++. ++++|..| +... ||||||||+|.++++|.....++. ..
T Consensus 78 ~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~~-~~il~iDEid~l~~~r~~~~~~~~~~~~~ 155 (456)
T 2c9o_A 78 ALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIKE-TKEVYEGEVTELTPCETENPMGGYGKTIS 155 (456)
T ss_dssp HHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEEE-EEEEEEEEEEEEEEC--------------
T ss_pred HHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhcC-CcEEEEechhhcccccCCCCCCCcchHHH
Confidence 48999999999 999999999999876 99988 99999999 6566 999999999999998866431111 11
Q ss_pred ---------------HHHHHHHHHhc----cCCCCeEEEEecCCcccccHHHh--ccccc--EEEeCCCC--HHHHHHHH
Q psy4165 72 ---------------ATLNAFLYRTG----EQSDKFMLVLASNTPQQFDWAVN--DRLDE--MVEFPLPT--LNERERLV 126 (242)
Q Consensus 72 ---------------~~l~~lL~~l~----~~~~~v~vI~tTn~~~~ld~al~--~Rfd~--~i~~~~P~--~~~R~~Il 126 (242)
++.+.++..++ ..++.++|++|||+++.+|+++. +|||+ .+.+|.|+ .++|.+|+
T Consensus 156 ~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il 235 (456)
T 2c9o_A 156 HVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEII 235 (456)
T ss_dssp CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEE
T ss_pred HHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHH
Confidence 12234666664 23334666699999999999998 89998 67777774 47888887
Q ss_pred HHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 127 RLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
+.+.. .+++.++..|+| |+||.++|.
T Consensus 236 ~~~~~----------------------~dl~~~a~~t~g--gadl~~l~~ 261 (456)
T 2c9o_A 236 QDVTL----------------------HDLDVANARPQG--GQDILSMMG 261 (456)
T ss_dssp EEEEH----------------------HHHHHTC----------------
T ss_pred HHHHH----------------------HHHHHHHHhCCC--hhHHHHHHh
Confidence 76542 134889999999 999999995
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.68 E-value=4.1e-16 Score=133.30 Aligned_cols=158 Identities=19% Similarity=0.157 Sum_probs=120.1
Q ss_pred ChHHHHHHhcC-------CcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHH
Q psy4165 1 MFAKKLAHHSG-------MDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 1 llA~aiA~e~~-------~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
++|+++|+.++ .+++.++++++.+.+ |.....+..+|..+. ++||||||+|.+++.++... ....
T Consensus 82 ~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~----~~vl~iDEid~l~~~~~~~~---~~~~ 154 (309)
T 3syl_A 82 TVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM----GGVLFIDEAYYLYRPDNERD---YGQE 154 (309)
T ss_dssp HHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHT----TSEEEEETGGGSCCCC---C---CTHH
T ss_pred HHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcC----CCEEEEEChhhhccCCCccc---ccHH
Confidence 37899999873 499999999998765 888888999998884 79999999999987654322 1345
Q ss_pred HHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccccc
Q psy4165 73 TLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKV 147 (242)
Q Consensus 73 ~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~ 147 (242)
.++.|+..|+....++++|++||... .++|+|++||+..++|++|+.+++.+|++.++.+.+.. +
T Consensus 155 ~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~----------~ 224 (309)
T 3syl_A 155 AIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQ----------M 224 (309)
T ss_dssp HHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCE----------E
T ss_pred HHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCC----------C
Confidence 67788888877777889999998754 36799999999999999999999999999999864321 1
Q ss_pred CCCChhHhHHHHHHh-------CCCCCHHHHHHHHHHHH
Q psy4165 148 APFDYTSLCSKIAHV-------TEGLSGREIAKLGVAWQ 179 (242)
Q Consensus 148 ~~~d~~~~l~~la~~-------t~g~s~adi~~lv~~a~ 179 (242)
+ ...+..++.. ...-+++++.+++..+.
T Consensus 225 ~----~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 225 T----PEAETALRAYIGLRRNQPHFANARSIRNALDRAR 259 (309)
T ss_dssp C----HHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred C----HHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 1 2233555554 22234889999987554
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.59 E-value=4.3e-14 Score=123.55 Aligned_cols=175 Identities=11% Similarity=0.097 Sum_probs=127.2
Q ss_pred ChHHHHHHhcCC--cEEEEecCCccccc--------------------------------------------------ch
Q psy4165 1 MFAKKLAHHSGM--DYAIMTGGDVAPMG--------------------------------------------------SS 28 (242)
Q Consensus 1 llA~aiA~e~~~--~~~~v~~~~l~~~~--------------------------------------------------g~ 28 (242)
++|+++|++++. +++.+++..+.+.+ |+
T Consensus 85 ~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~ 164 (368)
T 3uk6_A 85 AIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGE 164 (368)
T ss_dssp HHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC------
T ss_pred HHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccc
Confidence 479999999885 88888876644321 22
Q ss_pred HHHHHHHHHHHHHhC----C----CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEec------
Q psy4165 29 GVTAIHKVFDWASSS----R----KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLAS------ 94 (242)
Q Consensus 29 ~e~~l~~~f~~A~~~----~----~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tT------ 94 (242)
....++..|..+... . .|+||||||+|.+. ...++.|+..++....+++++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~------------~~~~~~L~~~le~~~~~~~ii~t~~~~~~i 232 (368)
T 3uk6_A 165 IKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLD------------IESFSFLNRALESDMAPVLIMATNRGITRI 232 (368)
T ss_dssp -CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSB------------HHHHHHHHHHTTCTTCCEEEEEESCSEEEC
T ss_pred cHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccC------------hHHHHHHHHHhhCcCCCeeeeecccceeee
Confidence 234555556554421 1 17899999999984 234566777776666666666554
Q ss_pred -----CCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHH
Q psy4165 95 -----NTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGR 169 (242)
Q Consensus 95 -----n~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~a 169 (242)
|.+..+++++++||.. ++|++|+.+++.+|++..+...+ .. ++ +..++.+++.+.|.+++
T Consensus 233 ~~t~~~~~~~l~~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~~~----------~~---~~-~~~l~~l~~~~~~G~~r 297 (368)
T 3uk6_A 233 RGTSYQSPHGIPIDLLDRLLI-VSTTPYSEKDTKQILRIRCEEED----------VE---MS-EDAYTVLTRIGLETSLR 297 (368)
T ss_dssp BTSSCEEETTCCHHHHTTEEE-EEECCCCHHHHHHHHHHHHHHTT----------CC---BC-HHHHHHHHHHHHHSCHH
T ss_pred eccCCCCcccCCHHHHhhccE-EEecCCCHHHHHHHHHHHHHHcC----------CC---CC-HHHHHHHHHHhcCCCHH
Confidence 4588999999999985 89999999999999999987521 11 22 34558899998878999
Q ss_pred HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 170 EIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 170 di~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
++.+++..+...+.......++.+++.+++...
T Consensus 298 ~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 298 YAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 999999966655555666799999999998764
No 33
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.59 E-value=1e-14 Score=122.77 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=108.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCcc-ccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVA-PMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~-~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
++|+++|++++++|+.+++++.. ... +.....++.+|..+.... |+||||||+|.+++.+..+.. ....++..|+
T Consensus 79 ~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~~--~~~~~l~~L~ 155 (272)
T 1d2n_A 79 ALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQ-LSCVVVDDIERLLDYVPIGPR--FSNLVLQALL 155 (272)
T ss_dssp HHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSS-EEEEEECCHHHHTTCBTTTTB--CCHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcC-CcEEEEEChhhhhccCCCChh--HHHHHHHHHH
Confidence 47999999999999999887533 222 344567899999998766 899999999999876543221 1233444455
Q ss_pred HHhcc---CCCCeEEEEecCCcccccH-HHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhH
Q psy4165 79 YRTGE---QSDKFMLVLASNTPQQFDW-AVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTS 154 (242)
Q Consensus 79 ~~l~~---~~~~v~vI~tTn~~~~ld~-al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~ 154 (242)
..++. ...++++|+|||.++.+|+ .+.+||+..|++|+++. |.+|.+.+.... .++ +.
T Consensus 156 ~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~--r~~i~~i~~~~~---------------~~~-~~ 217 (272)
T 1d2n_A 156 VLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIAT--GEQLLEALELLG---------------NFK-DK 217 (272)
T ss_dssp HHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEE--HHHHHHHHHHHT---------------CSC-HH
T ss_pred HHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccH--HHHHHHHHHhcC---------------CCC-HH
Confidence 44542 4557889999999999999 56799999998876654 344444433221 111 44
Q ss_pred hHHHHHHhCCCC----CHHHHHHHHH
Q psy4165 155 LCSKIAHVTEGL----SGREIAKLGV 176 (242)
Q Consensus 155 ~l~~la~~t~g~----s~adi~~lv~ 176 (242)
.+..+++.+.|| +.+++.+++.
T Consensus 218 ~~~~l~~~~~g~~~~g~ir~l~~~l~ 243 (272)
T 1d2n_A 218 ERTTIAQQVKGKKVWIGIKKLLMLIE 243 (272)
T ss_dssp HHHHHHHHHTTSEEEECHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccccHHHHHHHHH
Confidence 568899999998 5666666664
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.56 E-value=2.3e-13 Score=117.78 Aligned_cols=166 Identities=14% Similarity=0.127 Sum_probs=121.0
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
++|+++|++++.+|+.++++.+. ....+...+.. ...+++|||||||.+.. .....|+..
T Consensus 70 ~la~~ia~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~vl~lDEi~~l~~------------~~~~~Ll~~ 129 (338)
T 3pfi_A 70 TLANIISYEMSANIKTTAAPMIE-----KSGDLAAILTN---LSEGDILFIDEIHRLSP------------AIEEVLYPA 129 (338)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGCC-----SHHHHHHHHHT---CCTTCEEEEETGGGCCH------------HHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEecchhcc-----chhHHHHHHHh---ccCCCEEEEechhhcCH------------HHHHHHHHH
Confidence 47999999999999999997763 22334444432 23489999999999842 223344444
Q ss_pred hccCC------------------CCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcc
Q psy4165 81 TGEQS------------------DKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGK 142 (242)
Q Consensus 81 l~~~~------------------~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~ 142 (242)
++... .++++|++||+...++++|++||+..++|++|+.+++..+++.++...+..
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~------ 203 (338)
T 3pfi_A 130 MEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT------ 203 (338)
T ss_dssp HHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE------
T ss_pred HHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC------
Confidence 43211 148999999999999999999999999999999999999999998763221
Q ss_pred cccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 143 RRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 143 ~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
++ ...++.++..+.| +++++.+++..+...+.....+.++.+++..++..
T Consensus 204 -------~~-~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 204 -------CE-EKAALEIAKRSRS-TPRIALRLLKRVRDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp -------EC-HHHHHHHHHTTTT-CHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred -------CC-HHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 11 3345778886664 67888898875544444445567899998888765
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.56 E-value=8.9e-14 Score=118.41 Aligned_cols=195 Identities=17% Similarity=0.215 Sum_probs=128.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc--ccc-hHHHHHHHHHHHH-----HhCCCcEEEEEecccccccccCCCccchHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP--MGS-SGVTAIHKVFDWA-----SSSRKGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~--~~g-~~e~~l~~~f~~A-----~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
++|+++|+.++.+++.++++.+.. +.| +....++.+|..+ .... ++||||||+|.+.+.............
T Consensus 65 ~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEi~~l~~~~~~~~~~~~~~~ 143 (310)
T 1ofh_A 65 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQ-NGIVFIDEIDKICKKGEYSGADVSREG 143 (310)
T ss_dssp HHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHH-HCEEEEECGGGGSCCSSCCSSHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccC-CCEEEEEChhhcCccccccccchhHHH
Confidence 379999999999999999998875 334 3345677777633 1122 799999999999877654332222334
Q ss_pred HHHHHHHHhccC----------CCCeEEEEe----cCCcccccHHHhcccccEEEeCCCCHHHHHHHHHH----HHhccc
Q psy4165 73 TLNAFLYRTGEQ----------SDKFMLVLA----SNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRL----YFDKFV 134 (242)
Q Consensus 73 ~l~~lL~~l~~~----------~~~v~vI~t----Tn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~----~l~~~~ 134 (242)
+.+.|+..++.. ..++++|++ ++.+..+++++++||+..|+|++|+.+++.+|++. ++..+.
T Consensus 144 ~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~ 223 (310)
T 1ofh_A 144 VQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYK 223 (310)
T ss_dssp HHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHH
Confidence 456777766532 346888888 67899999999999998999999999999999994 222110
Q ss_pred cchhhhcccccccCCCChhHhHHHHHHhC-------CCCCHHHHHHHHHHHHHHHh---hhcCC---CccHHHHHHHHHH
Q psy4165 135 LQPAAQGKRRLKVAPFDYTSLCSKIAHVT-------EGLSGREIAKLGVAWQASAY---ASEDG---VLTEAMVMSKVED 201 (242)
Q Consensus 135 ~~~~~~~~~~~~~~~~d~~~~l~~la~~t-------~g~s~adi~~lv~~a~~~~~---~~~~~---~~~~~~~~~a~~~ 201 (242)
..... .+.. -.++ +..++.+++.+ ++.+++++.+++..+...+. +...+ .++.+++.+++..
T Consensus 224 ~~~~~---~~~~-~~~~-~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 224 ALMAT---EGVN-IAFT-TDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHHH---TTCE-EEEC-HHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred HHHHh---cCCe-eccC-HHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 00000 0000 0122 33456677765 35789999999985442221 11222 4888888887754
No 36
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.54 E-value=5.4e-15 Score=136.34 Aligned_cols=185 Identities=16% Similarity=0.146 Sum_probs=112.5
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc---------c-cchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP---------M-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~---------~-~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
+||++||+.++.+++.++++.+.. . .|.....+...|..+...+ | ||||||+|.+.+.+...
T Consensus 123 tlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~-~-vl~lDEid~l~~~~~~~------ 194 (543)
T 3m6a_A 123 SLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLN-P-VFLLDEIDKMSSDFRGD------ 194 (543)
T ss_dssp HHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSS-E-EEEEEESSSCC------------
T ss_pred HHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccC-C-EEEEhhhhhhhhhhccC------
Confidence 489999999999999999876532 2 2666677788888887665 5 99999999998654321
Q ss_pred HHHHHHHHHHhccCC---------------CCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhcccc
Q psy4165 71 RATLNAFLYRTGEQS---------------DKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVL 135 (242)
Q Consensus 71 ~~~l~~lL~~l~~~~---------------~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~ 135 (242)
..+.||..|+... .++++|+|||+++.||++|++||+ .|+|+.|+.++|.+|++.++.+...
T Consensus 195 --~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~ 271 (543)
T 3m6a_A 195 --PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQI 271 (543)
T ss_dssp -----CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHH
T ss_pred --HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHH
Confidence 2345555554211 568999999999999999999996 7999999999999999998833111
Q ss_pred chhhhcccccccCCCCh-hHhHHHHHHhCCC-CCHHHHHHHHHHH----HHHHhhhcC--CCccHHHHHHHHHH
Q psy4165 136 QPAAQGKRRLKVAPFDY-TSLCSKIAHVTEG-LSGREIAKLGVAW----QASAYASED--GVLTEAMVMSKVED 201 (242)
Q Consensus 136 ~~~~~~~~~~~~~~~d~-~~~l~~la~~t~g-~s~adi~~lv~~a----~~~~~~~~~--~~~~~~~~~~a~~~ 201 (242)
. ..++....+.+ +..+..++....+ ...++|++.+..+ ......... ..++.+++.+++..
T Consensus 272 ~-----~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 272 K-----EHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp H-----HTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred H-----HcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 0 01111112211 3344566654333 4445555544322 222222211 26788888777643
No 37
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.50 E-value=9.5e-14 Score=95.24 Aligned_cols=75 Identities=20% Similarity=0.226 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHH
Q psy4165 115 PLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAM 194 (242)
Q Consensus 115 ~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~ 194 (242)
|+|+.++|.+||+.|++++++. .++|+ +.||+.|+||||+||.++|++|...+.......++.+|
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-----------~~~dl----~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d 65 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-----------RGINL----RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 65 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-----------TTCCH----HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-----------CccCH----HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 7899999999999999875432 35666 99999999999999999999776666666667899999
Q ss_pred HHHHHHHHHH
Q psy4165 195 VMSKVEDSIR 204 (242)
Q Consensus 195 ~~~a~~~~~~ 204 (242)
|..|+.++..
T Consensus 66 ~~~Al~~v~~ 75 (78)
T 3kw6_A 66 FEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 38
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.50 E-value=2.2e-13 Score=116.89 Aligned_cols=170 Identities=16% Similarity=0.188 Sum_probs=119.0
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
++|++++++++.+++.++++.+.. ...+...|..+ ...+++|||||+|.+.. .....+..++..
T Consensus 53 ~la~~i~~~~~~~~~~~~~~~~~~-----~~~l~~~l~~~--~~~~~~l~lDEi~~l~~---------~~~~~L~~~l~~ 116 (324)
T 1hqc_A 53 TLAHVIAHELGVNLRVTSGPAIEK-----PGDLAAILANS--LEEGDILFIDEIHRLSR---------QAEEHLYPAMED 116 (324)
T ss_dssp HHHHHHHHHHTCCEEEECTTTCCS-----HHHHHHHHTTT--CCTTCEEEETTTTSCCH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeccccCC-----hHHHHHHHHHh--ccCCCEEEEECCccccc---------chHHHHHHHHHh
Confidence 479999999999999999887632 23344444331 23489999999999842 222333333333
Q ss_pred hc------c---------CCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccc
Q psy4165 81 TG------E---------QSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRL 145 (242)
Q Consensus 81 l~------~---------~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~ 145 (242)
.. . ...++.+|++||++..+++++.+||+..+++++|+.+++..+++.++.+.+..
T Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--------- 187 (324)
T 1hqc_A 117 FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--------- 187 (324)
T ss_dssp SEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC---------
T ss_pred hhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC---------
Confidence 21 0 11357899999999999999999999899999999999999999998753221
Q ss_pred ccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 146 KVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 146 ~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
++ ...++.++..+.| +++++.+++..+...+.......++.+++..++..
T Consensus 188 ----~~-~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 188 ----IT-EEAALEIGRRSRG-TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp ----CC-HHHHHHHHHHSCS-CHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred ----CC-HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 22 3445889999865 57899998874332232234557888888777654
No 39
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.45 E-value=4.9e-13 Score=93.32 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=63.5
Q ss_pred EeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccH
Q psy4165 113 EFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTE 192 (242)
Q Consensus 113 ~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~ 192 (242)
+-.+||.++|++||+.+++++++. .++|+ +.||+.|+||||+||.++|++|...+.......++.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~-----------~dvdl----~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~ 71 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLT-----------RGINL----RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQ 71 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEEC-----------TTCCC----HHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCC-----------cccCH----HHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 346899999999999999875432 35777 899999999999999999996666566555678999
Q ss_pred HHHHHHHHHHH
Q psy4165 193 AMVMSKVEDSI 203 (242)
Q Consensus 193 ~~~~~a~~~~~ 203 (242)
++|..|+.++.
T Consensus 72 ~df~~Al~~v~ 82 (86)
T 2krk_A 72 EDFEMAVAKVM 82 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999998875
No 40
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.43 E-value=7e-12 Score=109.51 Aligned_cols=183 Identities=14% Similarity=0.072 Sum_probs=124.8
Q ss_pred hHHHHHHhc---------CCcEEEEecCCcccc-----------------cch-HHHHHHHHHHHHHhCCCcEEEEEecc
Q psy4165 2 FAKKLAHHS---------GMDYAIMTGGDVAPM-----------------GSS-GVTAIHKVFDWASSSRKGLVLFIDEA 54 (242)
Q Consensus 2 lA~aiA~e~---------~~~~~~v~~~~l~~~-----------------~g~-~e~~l~~~f~~A~~~~~p~Il~iDei 54 (242)
+|+++++++ +.+++.+++....+. .|. ....+..++.......+|+||||||+
T Consensus 60 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi 139 (387)
T 2v1u_A 60 VARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEI 139 (387)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETT
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccH
Confidence 688888887 889999998764321 121 22335566666554545899999999
Q ss_pred cccccccCCCccchHHHHHHHHHHHHhccC--CCCeEEEEecCCc---ccccHHHhccccc-EEEeCCCCHHHHHHHHHH
Q psy4165 55 DAFLRKRSSETISESLRATLNAFLYRTGEQ--SDKFMLVLASNTP---QQFDWAVNDRLDE-MVEFPLPTLNERERLVRL 128 (242)
Q Consensus 55 D~l~~~r~~~~~~~~~~~~l~~lL~~l~~~--~~~v~vI~tTn~~---~~ld~al~~Rfd~-~i~~~~P~~~~R~~Il~~ 128 (242)
|.+...+ .....+..++..+... ..++.+|++||.+ +.+++++.+||.. .++|++|+.+++.+|++.
T Consensus 140 ~~l~~~~-------~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~ 212 (387)
T 2v1u_A 140 DFLPKRP-------GGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILET 212 (387)
T ss_dssp THHHHST-------THHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHH
T ss_pred hhhcccC-------CCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHH
Confidence 9996432 1235666677666533 5678999999988 7899999999975 899999999999999999
Q ss_pred HHhccccchhhhcccccccCCCChhHhHHHHHHhCC---CCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Q psy4165 129 YFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE---GLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~---g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~ 204 (242)
.+.... .....++ ..++.+++.+. | .++.+.+++..+...+.......++.+++..++.....
T Consensus 213 ~~~~~~--------~~~~~~~----~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 213 RAEEAF--------NPGVLDP----DVVPLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp HHHHHB--------CTTTBCS----SHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred HHHhhc--------cCCCCCH----HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 986410 0111222 22366777665 4 56777788875443333335568999999999877643
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.42 E-value=2.3e-11 Score=97.66 Aligned_cols=161 Identities=15% Similarity=0.113 Sum_probs=109.4
Q ss_pred hHHHHHHhc-----CCcEEEEecCCcccccchHHHHHHHHHHHHHh-----CCCcEEEEEecccccccccCCCccchHHH
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASS-----SRKGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~-----~~~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
+|+++++++ +.+++.++++.... ...+...+..... ..+|.||+|||+|.+.. .
T Consensus 54 l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------~-- 117 (226)
T 2chg_A 54 TAIALARDLFGENWRDNFIEMNASDERG-----IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------D-- 117 (226)
T ss_dssp HHHHHHHHHHGGGGGGGEEEEETTCTTC-----HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH---------H--
T ss_pred HHHHHHHHHhccccccceEEeccccccC-----hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH---------H--
Confidence 678888775 46788888766432 1222332222221 13489999999999843 1
Q ss_pred HHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 72 ATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 72 ~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
....|+..++....++.+|++||.+..+++++.+||. .+++++|+.+++.++++.++.+.+. . ++
T Consensus 118 -~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~----------~---~~ 182 (226)
T 2chg_A 118 -AQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGV----------K---IT 182 (226)
T ss_dssp -HHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTC----------C---BC
T ss_pred -HHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCC----------C---CC
Confidence 2334555555556678899999999999999999998 9999999999999999998865321 1 11
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
...+..+++.+.| +++.+.+++. .+...+ +.++.+++.+++.
T Consensus 183 -~~~~~~l~~~~~g-~~r~l~~~l~--~~~~~~---~~I~~~~v~~~~~ 224 (226)
T 2chg_A 183 -EDGLEALIYISGG-DFRKAINALQ--GAAAIG---EVVDADTIYQITA 224 (226)
T ss_dssp -HHHHHHHHHHHTT-CHHHHHHHHH--HHHHTC---SCBCHHHHHHHHH
T ss_pred -HHHHHHHHHHcCC-CHHHHHHHHH--HHHhcC---ceecHHHHHHHhc
Confidence 3345778877754 6666666665 222222 6899999988774
No 42
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.40 E-value=2.3e-13 Score=119.27 Aligned_cols=176 Identities=13% Similarity=0.151 Sum_probs=113.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccc-c-chH-HHHHHHHHHHH----HhCCCcEEEEEecccccccccCCCccchH--HH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPM-G-SSG-VTAIHKVFDWA----SSSRKGLVLFIDEADAFLRKRSSETISES--LR 71 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~-~-g~~-e~~l~~~f~~A----~~~~~p~Il~iDeiD~l~~~r~~~~~~~~--~~ 71 (242)
++|++||+.++.||+.++++.+... + |.. +..+..+|..+ .... |+||||||+|.+.+.+.+.+.+.. ..
T Consensus 66 ~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~vl~lDEid~l~~~~~~~~~~~~~~~~ 144 (363)
T 3hws_A 66 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQ-RGIVYIDQIDKISRKSDNPSITRDVSGE 144 (363)
T ss_dssp HHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHH-HCEEEEECHHHHCCCSSCC---CHHHHH
T ss_pred HHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcC-CcEEEEeChhhhcccccccccccccchH
Confidence 4899999999999999999988753 3 655 66788888776 3333 899999999999987765432221 23
Q ss_pred HHHHHHHHHhccC-------------CCCeEEEEecCC--------c---------------------------------
Q psy4165 72 ATLNAFLYRTGEQ-------------SDKFMLVLASNT--------P--------------------------------- 97 (242)
Q Consensus 72 ~~l~~lL~~l~~~-------------~~~v~vI~tTn~--------~--------------------------------- 97 (242)
.+++.||..|+.. ...+++|+|||. .
T Consensus 145 ~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~ 224 (363)
T 3hws_A 145 GVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGE 224 (363)
T ss_dssp HHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHH
T ss_pred HHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHH
Confidence 4677787777621 001334444444 1
Q ss_pred -------cc-----ccHHHhcccccEEEeCCCCHHHHHHHHHH----HHhccccchhhhcccccccCCCChhHhHHHHHH
Q psy4165 98 -------QQ-----FDWAVNDRLDEMVEFPLPTLNERERLVRL----YFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAH 161 (242)
Q Consensus 98 -------~~-----ld~al~~Rfd~~i~~~~P~~~~R~~Il~~----~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~ 161 (242)
+. +.|+|++||+..+.|++|+.+++.+|+.. ++.++...... .+..+ .++ +..++.|++
T Consensus 225 l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~---~~~~l-~~~-~~a~~~L~~ 299 (363)
T 3hws_A 225 LLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNL---EGVDL-EFR-DEALDAIAK 299 (363)
T ss_dssp HHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHT---TTCEE-EEC-HHHHHHHHH
T ss_pred HHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHh---cCceE-EEC-HHHHHHHHH
Confidence 11 78999999999999999999999999997 43322110000 01100 112 334466665
Q ss_pred h--CCCCCHHHHHHHHHHHHHHH
Q psy4165 162 V--TEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 162 ~--t~g~s~adi~~lv~~a~~~~ 182 (242)
. ...+.+++|++++..+....
T Consensus 300 ~~~~~~~gaR~L~~~ie~~~~~~ 322 (363)
T 3hws_A 300 KAMARKTGARGLRSIVEAALLDT 322 (363)
T ss_dssp HHHHTTCTTTTHHHHHHHHHHHH
T ss_pred hhcCCccCchHHHHHHHHHHHHH
Confidence 3 34567788999887544333
No 43
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.39 E-value=1.2e-12 Score=112.63 Aligned_cols=169 Identities=14% Similarity=0.175 Sum_probs=108.1
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhC----CCcEEEEEecccccccccCCCccchHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSS----RKGLVLFIDEADAFLRKRSSETISESLRATLNA 76 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~----~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~ 76 (242)
.+|+++|++++.+++.+++++.. ...++..+...... .++.||||||+|.+.+ ....+.
T Consensus 63 ~la~~la~~l~~~~~~i~~~~~~------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-----------~~~~~~ 125 (324)
T 3u61_B 63 TVAKALCHDVNADMMFVNGSDCK------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-----------AESQRH 125 (324)
T ss_dssp HHHHHHHHHTTEEEEEEETTTCC------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-----------HHHHHH
T ss_pred HHHHHHHHHhCCCEEEEcccccC------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-----------HHHHHH
Confidence 37999999999999999987752 34455544443222 1389999999999941 123445
Q ss_pred HHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhH
Q psy4165 77 FLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLC 156 (242)
Q Consensus 77 lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l 156 (242)
|+..++....++.+|++||.+..+++++++||. .++|++|+.++|.+|++.++..+..... ..++..++ ...+
T Consensus 126 L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~---~~~~~~~~---~~~~ 198 (324)
T 3u61_B 126 LRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRLTEICK---HEGIAIAD---MKVV 198 (324)
T ss_dssp HHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHHHHHHH---HHTCCBSC---HHHH
T ss_pred HHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHH---HcCCCCCc---HHHH
Confidence 666666555678999999999999999999996 7999999999999888877654321111 01222222 1445
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 157 SKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 157 ~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
+.+++.+.| |++.+++..+.++ ..+.++.+++...+.
T Consensus 199 ~~l~~~~~g----d~R~a~~~L~~~~---~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 199 AALVKKNFP----DFRKTIGELDSYS---SKGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHHHTCS----CTTHHHHHHHHHG---GGTCBCC--------
T ss_pred HHHHHhCCC----CHHHHHHHHHHHh---ccCCCCHHHHHHHhC
Confidence 778888553 5555555334433 344577776665443
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.38 E-value=7.5e-12 Score=112.71 Aligned_cols=170 Identities=16% Similarity=0.216 Sum_probs=115.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~l 77 (242)
++|++||+.++.+|+.+++... +.+.++.+|..+... .+++||||||+|.+... ....|
T Consensus 65 tlAr~ia~~~~~~f~~l~a~~~------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~------------~q~~L 126 (447)
T 3pvs_A 65 TLAEVIARYANADVERISAVTS------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS------------QQDAF 126 (447)
T ss_dssp HHHHHHHHHTTCEEEEEETTTC------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CC
T ss_pred HHHHHHHHHhCCCeEEEEeccC------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH------------HHHHH
Confidence 4799999999999999987553 344567777766532 33899999999999432 23456
Q ss_pred HHHhccCCCCeEEEEec--CCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 78 LYRTGEQSDKFMLVLAS--NTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 78 L~~l~~~~~~v~vI~tT--n~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
|..++. +.+++|++| |....++++|++||. .+.|++|+.+++..+++.++.+...... ..++. ++ +..
T Consensus 127 L~~le~--~~v~lI~att~n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~---~~~~~---i~-~~a 196 (447)
T 3pvs_A 127 LPHIED--GTITFIGATTENPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYG---GQDIV---LP-DET 196 (447)
T ss_dssp HHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSST---TSSEE---CC-HHH
T ss_pred HHHHhc--CceEEEecCCCCcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhc---cccCc---CC-HHH
Confidence 666653 456777766 666789999999997 8889999999999999999976321100 00111 22 345
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhh----cCCCccHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYAS----EDGVLTEAMVMSKVED 201 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~----~~~~~~~~~~~~a~~~ 201 (242)
++.+++.+.| +.+++.+++. .+...+. ....||.+++.+++..
T Consensus 197 l~~L~~~~~G-d~R~lln~Le--~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 197 RRAIAELVNG-DARRALNTLE--MMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHHHHHHHCS-CHHHHHHHHH--HHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred HHHHHHHCCC-CHHHHHHHHH--HHHHhcccccCCCCccCHHHHHHHHhh
Confidence 5788888654 6677777776 3334443 2247999999887754
No 45
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.38 E-value=1.1e-12 Score=92.03 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q psy4165 118 TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMS 197 (242)
Q Consensus 118 ~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~ 197 (242)
|.++|.+||+.+++++++. +++|+ +.||+.|+||||+||.++|++|...+.......++.+||..
T Consensus 2 d~~~R~~Il~~~~~~~~~~-----------~dvdl----~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~ 66 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-----------RGIRW----ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLK 66 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-----------SCCCH----HHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCC-----------CccCH----HHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 5689999999999875432 35666 99999999999999999999776666666667899999999
Q ss_pred HHHHHHHhhhhhhhcccc
Q psy4165 198 KVEDSIRAHKMKVRWQSE 215 (242)
Q Consensus 198 a~~~~~~~~~~~~~~~~~ 215 (242)
|+.++..+..++.....+
T Consensus 67 Al~~v~~~~~~~~~~~~y 84 (88)
T 3vlf_B 67 AVDKVISGYKKFSSTSRY 84 (88)
T ss_dssp HHHHHTC-----------
T ss_pred HHHHHhcCcccccchhHH
Confidence 999998765555444443
No 46
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.37 E-value=3.6e-12 Score=121.75 Aligned_cols=184 Identities=12% Similarity=0.092 Sum_probs=126.1
Q ss_pred hHHHHHHhc----------CCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
+|+++|..+ +++++.++.+.+.. ++ |+.+..++.+|..+.... |+||||||+|.+++.+.......
T Consensus 223 la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~-~~iL~IDEi~~l~~~~~~~~~~~ 301 (758)
T 1r6b_X 223 IAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDT-NSILFIDEIHTIIGAGAASGGQV 301 (758)
T ss_dssp HHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSS-CEEEEETTTTTTTTSCCSSSCHH
T ss_pred HHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcC-CeEEEEechHHHhhcCCCCcchH
Confidence 688888876 77899998888763 44 899999999999998776 89999999999988665432122
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccc
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKR 143 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~ 143 (242)
... .+|..+- ..+.+.+|++||.++ .+|++|.+||+ .+.|+.|+.++|.+||+.++..+... .
T Consensus 302 ---~~~-~~L~~~l-~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~------~ 369 (758)
T 1r6b_X 302 ---DAA-NLIKPLL-SSGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAH------H 369 (758)
T ss_dssp ---HHH-HHHSSCS-SSCCCEEEEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHH------H
T ss_pred ---HHH-HHHHHHH-hCCCeEEEEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHh------c
Confidence 222 2332221 245688999998754 57899999998 79999999999999999987653211 0
Q ss_pred ccccCCCChhHhHHHHHHhCCC-----CCHHHHHHHHHHHHHHHhh----hcCCCccHHHHHHHHHHH
Q psy4165 144 RLKVAPFDYTSLCSKIAHVTEG-----LSGREIAKLGVAWQASAYA----SEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 144 ~~~~~~~d~~~~l~~la~~t~g-----~s~adi~~lv~~a~~~~~~----~~~~~~~~~~~~~a~~~~ 202 (242)
++..+ +..+..++..+.| +.+..+..++..+.+.... .....++.+++..++...
T Consensus 370 ~v~~~----~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 370 DVRYT----AKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp TCCCC----HHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred CCCCC----HHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 11111 2234555555444 5677888888855443332 123478888888887654
No 47
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.37 E-value=2.4e-11 Score=98.62 Aligned_cols=138 Identities=19% Similarity=0.218 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++.++..+.. ..+|.+|+|||+|.+.. ..++.|+..++....++.+|++||.+..+++++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~------------~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~ 175 (250)
T 1njg_A 108 VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 175 (250)
T ss_dssp HHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH------------HHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHHHHhhhchhcCCceEEEEECcccccH------------HHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHH
Confidence 3456666665432 22379999999999831 24456666676666788999999999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE 186 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~ 186 (242)
|+ ..+++++|+.++..++++.++.+.+ ... + ...++.+++.+.| +++.+.+++..+ ... .
T Consensus 176 r~-~~i~l~~l~~~e~~~~l~~~~~~~~----------~~~---~-~~~~~~l~~~~~G-~~~~~~~~~~~~--~~~--~ 235 (250)
T 1njg_A 176 RC-LQFHLKALDVEQIRHQLEHILNEEH----------IAH---E-PRALQLLARAAEG-SLRDALSLTDQA--IAS--G 235 (250)
T ss_dssp TS-EEEECCCCCHHHHHHHHHHHHHHTT----------CCB---C-HHHHHHHHHHHTT-CHHHHHHHHHHH--HTT--T
T ss_pred Hh-hhccCCCCCHHHHHHHHHHHHHhcC----------CCC---C-HHHHHHHHHHcCC-CHHHHHHHHHHH--Hhc--c
Confidence 97 5899999999999999999987521 111 1 3345789999987 899999998733 322 2
Q ss_pred CCCccHHHHHHHH
Q psy4165 187 DGVLTEAMVMSKV 199 (242)
Q Consensus 187 ~~~~~~~~~~~a~ 199 (242)
.+.++.+++.+++
T Consensus 236 ~~~i~~~~v~~~~ 248 (250)
T 1njg_A 236 DGQVSTQAVSAML 248 (250)
T ss_dssp TSSBCHHHHHHHS
T ss_pred CceecHHHHHHHh
Confidence 3479999988765
No 48
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.34 E-value=1.5e-11 Score=110.57 Aligned_cols=178 Identities=12% Similarity=0.114 Sum_probs=117.8
Q ss_pred ChHHHHHHhc-----CCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHH
Q psy4165 1 MFAKKLAHHS-----GMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATL 74 (242)
Q Consensus 1 llA~aiA~e~-----~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l 74 (242)
+||++|++++ +.+++++++..+...+ +.........|....... |.||||||+|.+.+.+ .....+
T Consensus 145 tLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vL~IDEi~~l~~~~-------~~q~~l 216 (440)
T 2z4s_A 145 HLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKK-VDILLIDDVQFLIGKT-------GVQTEL 216 (440)
T ss_dssp HHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTT-CSEEEEECGGGGSSCH-------HHHHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCC-CCEEEEeCcccccCCh-------HHHHHH
Confidence 3789999988 8899999988764322 111111112233333223 8999999999996421 122222
Q ss_pred HHHHHHhccCCCCeEEEEecCCccc---ccHHHhcccc--cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC
Q psy4165 75 NAFLYRTGEQSDKFMLVLASNTPQQ---FDWAVNDRLD--EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149 (242)
Q Consensus 75 ~~lL~~l~~~~~~v~vI~tTn~~~~---ld~al~~Rfd--~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~ 149 (242)
-.++..+. ..+..+||+|.+.+.. +++++++||. ..+++++|+.++|..|++..+... ++.+++
T Consensus 217 ~~~l~~l~-~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~----------~~~i~~ 285 (440)
T 2z4s_A 217 FHTFNELH-DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIE----------HGELPE 285 (440)
T ss_dssp HHHHHHHH-TTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHH----------TCCCCT
T ss_pred HHHHHHHH-HCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHc----------CCCCCH
Confidence 23333332 2345566666666665 8899999996 789999999999999999998752 222222
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
..+..|+..+.| +++++.+++..+.+.+... ...++.+++.+++....
T Consensus 286 ----e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~-~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 286 ----EVLNFVAENVDD-NLRRLRGAIIKLLVYKETT-GKEVDLKEAILLLKDFI 333 (440)
T ss_dssp ----THHHHHHHHCCS-CHHHHHHHHHHHHHHHHHS-SSCCCHHHHHHHTSTTT
T ss_pred ----HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHh
Confidence 234789999875 8999999998554444322 34699999999887654
No 49
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.31 E-value=4.5e-11 Score=115.68 Aligned_cols=164 Identities=18% Similarity=0.171 Sum_probs=102.9
Q ss_pred hHHHHHHhc----------CCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
+|+++|+.+ +.+++.++++.+.. .+ |+.+..++.+|..+....+|+||||||+|.+.+.+...+ ..
T Consensus 207 la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g-~~ 285 (854)
T 1qvr_A 207 IVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-AV 285 (854)
T ss_dssp HHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------
T ss_pred HHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-hH
Confidence 788999987 89999999998863 44 899999999999999764589999999999987654432 11
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCcc----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccc
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTPQ----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRR 144 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~ 144 (242)
.....+..+ +. .+++.+|++||.++ .+|+++.+||+. |+|+.|+.+++.+||+.++.++... .+
T Consensus 286 ~~~~~L~~~---l~--~~~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~------~~ 353 (854)
T 1qvr_A 286 DAGNMLKPA---LA--RGELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVH------HG 353 (854)
T ss_dssp ------HHH---HH--TTCCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHH------TT
T ss_pred HHHHHHHHH---Hh--CCCeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhh------cC
Confidence 122223333 32 35678999999875 479999999995 9999999999999999888753211 11
Q ss_pred cccCCCChhHhHHHHHHhC-----CCCCHHHHHHHHHHHHHHH
Q psy4165 145 LKVAPFDYTSLCSKIAHVT-----EGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 145 ~~~~~~d~~~~l~~la~~t-----~g~s~adi~~lv~~a~~~~ 182 (242)
.... +..+..++..+ .+|.+.....++.++.+..
T Consensus 354 ~~i~----~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~ 392 (854)
T 1qvr_A 354 VRIS----DSAIIAAATLSHRYITERRLPDKAIDLIDEAAARL 392 (854)
T ss_dssp CEEC----HHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHH
T ss_pred CCCC----HHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHH
Confidence 1111 23335555543 4577888888887554443
No 50
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.30 E-value=2.8e-12 Score=100.71 Aligned_cols=118 Identities=16% Similarity=0.211 Sum_probs=86.6
Q ss_pred hHHHHHHhc----------CCcEEEEecCCccc--c-cchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVAP--M-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~~--~-~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
+|+++++++ +.+++.++++.+.. . .|.....+..++..+....+|+||+|||+|.+.+.+.... ..
T Consensus 59 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~~ 137 (195)
T 1jbk_A 59 IVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AM 137 (195)
T ss_dssp HHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CC
T ss_pred HHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc-hH
Confidence 688888886 78999999887752 3 3677788999998776555589999999999986543322 11
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHH
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLV 126 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il 126 (242)
.....+..++ + .+++.+|++||.+. .+|+++.+||+ .+++++|+.++|.+||
T Consensus 138 ~~~~~l~~~~---~--~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 138 DAGNMLKPAL---A--RGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CCHHHHHHHH---H--TTSCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhh---c--cCCeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 1223333332 2 34678899999887 78999999998 7999999999999876
No 51
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.29 E-value=1.3e-10 Score=100.17 Aligned_cols=186 Identities=13% Similarity=0.101 Sum_probs=114.8
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc---ccchHH-HHHHHHHHHHHhCC--CcEEEEEecccccccccCCCccchHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP---MGSSGV-TAIHKVFDWASSSR--KGLVLFIDEADAFLRKRSSETISESLRATL 74 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~---~~g~~e-~~l~~~f~~A~~~~--~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l 74 (242)
+||+++|+.++.+++.++++.-.. ..|... ..-...|. .... .++||||||+|.+.+ .. .
T Consensus 61 ~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~---------~~---~ 126 (331)
T 2r44_A 61 LSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFE--VKKGPVFSNFILADEVNRSPA---------KV---Q 126 (331)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEE--EEECTTCSSEEEEETGGGSCH---------HH---H
T ss_pred HHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceE--eccCcccccEEEEEccccCCH---------HH---H
Confidence 479999999999999998742110 001000 00000000 0011 027999999999732 22 3
Q ss_pred HHHHHHhc-----------cCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchh
Q psy4165 75 NAFLYRTG-----------EQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPA 138 (242)
Q Consensus 75 ~~lL~~l~-----------~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~ 138 (242)
+.|+..|+ ..+.++++|+|+|..+ .+++++++||+..+++++|+.++|.+|++.++........
T Consensus 127 ~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~ 206 (331)
T 2r44_A 127 SALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQV 206 (331)
T ss_dssp HHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCC
T ss_pred HHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhc
Confidence 33444332 1244678888888543 3899999999989999999999999999998764211000
Q ss_pred ---h---------hcccccccCCCChhHhHHHHHHhC-------------------CCCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 139 ---A---------QGKRRLKVAPFDYTSLCSKIAHVT-------------------EGLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 139 ---~---------~~~~~~~~~~~d~~~~l~~la~~t-------------------~g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
. ....++.++ +..++.+++.. .|.|++.+..+++.+.+.+.....
T Consensus 207 ~~~~~~~~i~~~~~~~~~v~~~----~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~ 282 (331)
T 2r44_A 207 QKIVSKNDVLEIRNEINKVTIS----ESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNR 282 (331)
T ss_dssp CCCSCHHHHHHHHHHHHTCBCC----HHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCCHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCC
Confidence 0 000011111 11223343321 266999999999977777766677
Q ss_pred CCccHHHHHHHHHHHHH
Q psy4165 188 GVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 188 ~~~~~~~~~~a~~~~~~ 204 (242)
..++.+++.+++..+..
T Consensus 283 ~~v~~~dv~~~~~~vl~ 299 (331)
T 2r44_A 283 DYVLPEDIKEVAYDILN 299 (331)
T ss_dssp SBCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhH
Confidence 78999999999988763
No 52
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.29 E-value=1.1e-11 Score=105.72 Aligned_cols=159 Identities=17% Similarity=0.138 Sum_probs=104.4
Q ss_pred ChHHHHHHhc---CCcEEEEecCCcccccchHHHHH------------HHHHHHHHhCCCcEEEEEecccccccccCCCc
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAI------------HKVFDWASSSRKGLVLFIDEADAFLRKRSSET 65 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l------------~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~ 65 (242)
++|+++|+.+ +.+++.++++.+.... ....+ ...|..+....+++||||||+|.+.+
T Consensus 62 ~la~~la~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~------ 133 (311)
T 4fcw_A 62 ELAKTLAATLFDTEEAMIRIDMTEYMEKH--AVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP------ 133 (311)
T ss_dssp HHHHHHHHHHHSCGGGEEEEEGGGCCSTT--HHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH------
T ss_pred HHHHHHHHHHcCCCcceEEeecccccccc--cHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH------
Confidence 4799999987 5679999988765321 01111 01233333233269999999999832
Q ss_pred cchHHHHHHHHHHHHhccCC-----------CCeEEEEecCC--------------------------cccccHHHhccc
Q psy4165 66 ISESLRATLNAFLYRTGEQS-----------DKFMLVLASNT--------------------------PQQFDWAVNDRL 108 (242)
Q Consensus 66 ~~~~~~~~l~~lL~~l~~~~-----------~~v~vI~tTn~--------------------------~~~ld~al~~Rf 108 (242)
...+.|+..|+... .++++|+|||. ...++++|++||
T Consensus 134 ------~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~ 207 (311)
T 4fcw_A 134 ------DVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRL 207 (311)
T ss_dssp ------HHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTC
T ss_pred ------HHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcC
Confidence 23444555443111 36789999998 668999999999
Q ss_pred ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCC--CCCHHHHHHHHHHH
Q psy4165 109 DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE--GLSGREIAKLGVAW 178 (242)
Q Consensus 109 d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~--g~s~adi~~lv~~a 178 (242)
+..+.+++|+.+++..|++.++.++.......+ ... .++ +..++.|++..- ..++++|++++..+
T Consensus 208 ~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~-~~~---~~~-~~~~~~l~~~~~~~~gn~R~L~~~i~~~ 274 (311)
T 4fcw_A 208 DEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR-ISL---ELT-EAAKDFLAERGYDPVFGARPLRRVIQRE 274 (311)
T ss_dssp SEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT-CEE---EEC-HHHHHHHHHHSCBTTTBTTTHHHHHHHH
T ss_pred CeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC-cEE---EeC-HHHHHHHHHhCCCccCCchhHHHHHHHH
Confidence 999999999999999999999976432211000 001 122 344577777654 57788999998743
No 53
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.28 E-value=6.3e-13 Score=119.04 Aligned_cols=118 Identities=14% Similarity=0.048 Sum_probs=44.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc--ccc-hHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP--MGS-SGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~--~~g-~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~l 77 (242)
++|+++|++++++|+.++++.+.+ ++| +.+..++.+|..|.... ++||+|.+..... .....+++++|
T Consensus 65 ~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~-----~~De~d~~~~~~~----~~~e~rvl~~L 135 (444)
T 1g41_A 65 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLV-----RQQEIAKNRARAE----DVAEERILDAL 135 (444)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHH-----HHHHHHSCC-------------------
T ss_pred HHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcc-----hhhhhhhhhccch----hhHHHHHHHHH
Confidence 479999999999999999999887 347 58999999999998654 4899888754322 33457899999
Q ss_pred HHHhccCCCCeEEEEe-cCCcccccHHHh--cccccEEEeCCCCHH-HHHHHHH
Q psy4165 78 LYRTGEQSDKFMLVLA-SNTPQQFDWAVN--DRLDEMVEFPLPTLN-ERERLVR 127 (242)
Q Consensus 78 L~~l~~~~~~v~vI~t-Tn~~~~ld~al~--~Rfd~~i~~~~P~~~-~R~~Il~ 127 (242)
|.+||...+.--++++ ||+++.||++|+ +|||+.|++++|+.. .|.+|+.
T Consensus 136 L~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 136 LPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ------------------------------------------------------
T ss_pred HHHhhccccccccccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 9999744332233555 999999999999 799999999999988 7888863
No 54
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.27 E-value=6e-11 Score=102.09 Aligned_cols=173 Identities=13% Similarity=0.109 Sum_probs=110.8
Q ss_pred ChHHHHHHhc---CCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHH
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNA 76 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~ 76 (242)
+||+++++++ +.+++++++.++...+ +.........|..... . |.||||||+|.+.+.+ .....+..
T Consensus 52 ~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~vL~iDEi~~l~~~~-------~~~~~l~~ 122 (324)
T 1l8q_A 52 HLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK-S-VDLLLLDDVQFLSGKE-------RTQIEFFH 122 (324)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH-T-CSEEEEECGGGGTTCH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc-C-CCEEEEcCcccccCCh-------HHHHHHHH
Confidence 3789999998 8999999988775432 2222222223333332 2 7999999999986421 12223333
Q ss_pred HHHHhccCCCCeEEEEecCCcc---cccHHHhcccc--cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 77 FLYRTGEQSDKFMLVLASNTPQ---QFDWAVNDRLD--EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 77 lL~~l~~~~~~v~vI~tTn~~~---~ld~al~~Rfd--~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
++..+. ..+..+|+++++.+. .+++++.+||+ ..+++++ +.++|.+|++.++...+. . ++
T Consensus 123 ~l~~~~-~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~----------~---l~ 187 (324)
T 1l8q_A 123 IFNTLY-LLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL----------E---LR 187 (324)
T ss_dssp HHHHHH-HTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC----------C---CC
T ss_pred HHHHHH-HCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC----------C---CC
Confidence 333332 234567777888877 68999999996 6899999 999999999999875322 1 22
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHHHHHHH---Hhh-hcCCCc-cHHHHHHHHH
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGVAWQAS---AYA-SEDGVL-TEAMVMSKVE 200 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~~a~~~---~~~-~~~~~~-~~~~~~~a~~ 200 (242)
+..++.++..+ -+.+++.+++..+.+. +.. .....+ +.+++.+++.
T Consensus 188 -~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~ 238 (324)
T 1l8q_A 188 -KEVIDYLLENT--KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVA 238 (324)
T ss_dssp -HHHHHHHHHHC--SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhC--CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHH
Confidence 34468899998 4778888888744332 000 112235 5566655554
No 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.26 E-value=8.5e-10 Score=95.54 Aligned_cols=170 Identities=15% Similarity=0.198 Sum_probs=118.8
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
+||++||+++++++...+++.+.. ...+..++.. ..++.|+||||+|.+.+ .....+...+..
T Consensus 66 TLa~~ia~~l~~~~~~~sg~~~~~-----~~~l~~~~~~---~~~~~v~~iDE~~~l~~---------~~~e~L~~~~~~ 128 (334)
T 1in4_A 66 TLAHIIASELQTNIHVTSGPVLVK-----QGDMAAILTS---LERGDVLFIDEIHRLNK---------AVEELLYSAIED 128 (334)
T ss_dssp HHHHHHHHHHTCCEEEEETTTCCS-----HHHHHHHHHH---CCTTCEEEEETGGGCCH---------HHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCEEEEechHhcC-----HHHHHHHHHH---ccCCCEEEEcchhhcCH---------HHHHHHHHHHHh
Confidence 489999999999988887765422 1234444332 22368999999999853 112222111111
Q ss_pred hc---------------cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccc
Q psy4165 81 TG---------------EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRL 145 (242)
Q Consensus 81 l~---------------~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~ 145 (242)
.. ..-..+.++++|+++..|++.+++||...+.+++|+.+++.+|++......+.
T Consensus 129 ~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---------- 198 (334)
T 1in4_A 129 FQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV---------- 198 (334)
T ss_dssp SCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----------
T ss_pred cccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----------
Confidence 10 00124678889999999999999999989999999999999999998765321
Q ss_pred ccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 146 KVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 146 ~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
. ++ +..+..+++++.| +++++.++++.+...+.....+.++.+++.+++...
T Consensus 199 ~---~~-~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 199 E---IE-DAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp C---BC-HHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred C---cC-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 1 22 3345889999886 678998999865555555556789999999988775
No 56
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.25 E-value=8.2e-12 Score=113.12 Aligned_cols=147 Identities=14% Similarity=0.174 Sum_probs=97.5
Q ss_pred ChHHHHHHhc----------CCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchH
Q psy4165 1 MFAKKLAHHS----------GMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISES 69 (242)
Q Consensus 1 llA~aiA~e~----------~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~ 69 (242)
++|+++|..+ +.+++.++++ .++ |+.+..++.+|..+.... |+||||| +. .
T Consensus 216 ~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~-~~iLfiD---------~~----~- 277 (468)
T 3pxg_A 216 AIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAG-NIILFID---------AA----I- 277 (468)
T ss_dssp HHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCC-CCEEEEC---------C-------
T ss_pred HHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcC-CeEEEEe---------Cc----h-
Confidence 3789999986 8899999887 444 888889999999999876 8999999 11 1
Q ss_pred HHHHHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccc
Q psy4165 70 LRATLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRR 144 (242)
Q Consensus 70 ~~~~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~ 144 (242)
...+.|+..|. .+.+.+|++||.+. .+|+++.+||+ .|.|+.|+.+++.+||+.++.++... .+
T Consensus 278 --~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~------~~ 346 (468)
T 3pxg_A 278 --DASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAH------HR 346 (468)
T ss_dssp --------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGG------SS
T ss_pred --hHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHh------cC
Confidence 12233433343 55789999999987 69999999998 69999999999999999988763211 11
Q ss_pred cccCCCChhHhHHHHHHhCCCC-----CHHHHHHHHHHHHH
Q psy4165 145 LKVAPFDYTSLCSKIAHVTEGL-----SGREIAKLGVAWQA 180 (242)
Q Consensus 145 ~~~~~~d~~~~l~~la~~t~g~-----s~adi~~lv~~a~~ 180 (242)
...+ +..+..++..+.+| .+.....++..+.+
T Consensus 347 ~~i~----~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 347 VSIT----DDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp CSCC----HHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred CCCC----HHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHH
Confidence 2221 33446666655444 45577777775544
No 57
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.23 E-value=3.9e-11 Score=83.00 Aligned_cols=73 Identities=11% Similarity=0.095 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q psy4165 118 TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMS 197 (242)
Q Consensus 118 ~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~ 197 (242)
|.++|.+||+.+++++++. .++|+ +.||+.|+||||+||.++|++|...+.......++.+||..
T Consensus 2 d~~~R~~Il~~~l~~~~~~-----------~~vdl----~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~ 66 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-----------EEVDL----EDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEK 66 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-----------TTCCT----HHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCC-----------cccCH----HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHH
Confidence 6899999999999875332 35777 99999999999999999999555444444456899999999
Q ss_pred HHHHHHHh
Q psy4165 198 KVEDSIRA 205 (242)
Q Consensus 198 a~~~~~~~ 205 (242)
|+.++...
T Consensus 67 Al~~~~ps 74 (83)
T 3aji_B 67 AYKTVIKK 74 (83)
T ss_dssp HHHHHCC-
T ss_pred HHHHHccC
Confidence 99887533
No 58
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=9.9e-10 Score=95.64 Aligned_cols=182 Identities=16% Similarity=0.121 Sum_probs=120.2
Q ss_pred hHHHHHHhc------CCcEEEEecCCccc-----------------ccch-HHHHHHHHHHHHHhCCCcEEEEEeccccc
Q psy4165 2 FAKKLAHHS------GMDYAIMTGGDVAP-----------------MGSS-GVTAIHKVFDWASSSRKGLVLFIDEADAF 57 (242)
Q Consensus 2 lA~aiA~e~------~~~~~~v~~~~l~~-----------------~~g~-~e~~l~~~f~~A~~~~~p~Il~iDeiD~l 57 (242)
|++++++++ +.+++.+++....+ ..|. ....+..++........|+||+|||+|.+
T Consensus 61 l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 140 (386)
T 2qby_A 61 VVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAF 140 (386)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhh
Confidence 788899888 89999998654321 0111 23345566666655544899999999999
Q ss_pred ccccCCCccchHHHHHHHHHHHHhcc-CCCCeEEEEecCCc---ccccHHHhcccc-cEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 58 LRKRSSETISESLRATLNAFLYRTGE-QSDKFMLVLASNTP---QQFDWAVNDRLD-EMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 58 ~~~r~~~~~~~~~~~~l~~lL~~l~~-~~~~v~vI~tTn~~---~~ld~al~~Rfd-~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
...... ..+..++..++. ...++.+|++||.+ ..+++.+.+||. ..+++++|+.++..++++..+..
T Consensus 141 ~~~~~~--------~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~ 212 (386)
T 2qby_A 141 VKKYND--------DILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM 212 (386)
T ss_dssp HHSSCS--------THHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hccCcC--------HHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh
Confidence 754311 245556555543 45578999999987 578888888886 49999999999999999998763
Q ss_pred cccchhhhcccccccCCCChhHhHHHHHHhCCC--CCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 133 FVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEG--LSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g--~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
.. ....++ +..+..++..+.. -+++.+.+++..+...+.......++.+++..++....
T Consensus 213 ~~-----------~~~~~~-~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 213 AF-----------KPGVLP-DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HB-----------CSSCSC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred hc-----------cCCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 11 001122 3344666666641 35667777887443333333456899999998887764
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.22 E-value=5e-10 Score=97.95 Aligned_cols=174 Identities=18% Similarity=0.204 Sum_probs=114.5
Q ss_pred hHHHHHHhc-----------CCcEEEEecCCcc-cc------------------cch-HHHHHHHHHHHHHhCCCcEEEE
Q psy4165 2 FAKKLAHHS-----------GMDYAIMTGGDVA-PM------------------GSS-GVTAIHKVFDWASSSRKGLVLF 50 (242)
Q Consensus 2 lA~aiA~e~-----------~~~~~~v~~~~l~-~~------------------~g~-~e~~l~~~f~~A~~~~~p~Il~ 50 (242)
||+++++++ +.+++.+++.... +. .|. ....+..++..+... ++||+
T Consensus 61 la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~--~~vli 138 (384)
T 2qby_B 61 VSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI--RAIIY 138 (384)
T ss_dssp HHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS--CEEEE
T ss_pred HHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC--CCEEE
Confidence 788899887 9999999976543 10 011 123355555555544 34999
Q ss_pred EecccccccccCCCccchHHHHH-HHHHHHHhccCCCCeEEEEecCCc---ccccHHHhcccccEEEeCCCCHHHHHHHH
Q psy4165 51 IDEADAFLRKRSSETISESLRAT-LNAFLYRTGEQSDKFMLVLASNTP---QQFDWAVNDRLDEMVEFPLPTLNERERLV 126 (242)
Q Consensus 51 iDeiD~l~~~r~~~~~~~~~~~~-l~~lL~~l~~~~~~v~vI~tTn~~---~~ld~al~~Rfd~~i~~~~P~~~~R~~Il 126 (242)
|||+|.+...+. ... +..|+... .++.+|++||.+ +.+++++.+||...++|++|+.+++.+|+
T Consensus 139 lDEi~~l~~~~~--------~~~~l~~l~~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il 206 (384)
T 2qby_B 139 LDEVDTLVKRRG--------GDIVLYQLLRSD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFIL 206 (384)
T ss_dssp EETTHHHHHSTT--------SHHHHHHHHTSS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHH
T ss_pred EECHHHhccCCC--------CceeHHHHhcCC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHH
Confidence 999999965321 112 33443222 678999999988 78999999999889999999999999999
Q ss_pred HHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCC--CHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 127 RLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGL--SGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~--s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
+.++..- +....++ +..++.+++.+.+. .++.+.+++. .+...+.....++.+++..++....
T Consensus 207 ~~~~~~~-----------~~~~~~~-~~~~~~i~~~~~~~~G~~r~a~~~l~--~a~~~a~~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 207 SKYAEYG-----------LIKGTYD-DEILSYIAAISAKEHGDARKAVNLLF--RAAQLASGGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHHT-----------SCTTSCC-SHHHHHHHHHHHTTCCCHHHHHHHHH--HHHHHTTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHhh-----------cccCCcC-HHHHHHHHHHHHhccCCHHHHHHHHH--HHHHHhcCCCccCHHHHHHHHHHHh
Confidence 9988630 0001122 23346677776522 3344445555 2333344456899999999988765
No 60
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.22 E-value=2.5e-10 Score=93.02 Aligned_cols=165 Identities=12% Similarity=0.052 Sum_probs=107.5
Q ss_pred hHHHHHHhcC---CcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHHSG---MDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e~~---~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
||++++++++ .+++.++++++.....+. +. ...+|.+|+|||+|.+... ......+..++
T Consensus 68 la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~vliiDe~~~~~~~-------~~~~~~l~~~l 130 (242)
T 3bos_A 68 LIHAACARANELERRSFYIPLGIHASISTAL-------LE---GLEQFDLICIDDVDAVAGH-------PLWEEAIFDLY 130 (242)
T ss_dssp HHHHHHHHHHHTTCCEEEEEGGGGGGSCGGG-------GT---TGGGSSEEEEETGGGGTTC-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH-------HH---hccCCCEEEEeccccccCC-------HHHHHHHHHHH
Confidence 6788888765 688888888776543111 11 1123799999999998532 11123333444
Q ss_pred HHhccCCCCe-EEEEecCCcc---cccHHHhcccc--cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCCh
Q psy4165 79 YRTGEQSDKF-MLVLASNTPQ---QFDWAVNDRLD--EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDY 152 (242)
Q Consensus 79 ~~l~~~~~~v-~vI~tTn~~~---~ld~al~~Rfd--~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~ 152 (242)
..... .+.+ +|+.+++.+. .+++++.+||. ..+++++|+.+++.++++.++...+. . ++
T Consensus 131 ~~~~~-~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~----------~---~~- 195 (242)
T 3bos_A 131 NRVAE-QKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL----------Q---LP- 195 (242)
T ss_dssp HHHHH-HCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC----------C---CC-
T ss_pred HHHHH-cCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC----------C---CC-
Confidence 43322 2233 5555554444 56688999986 89999999999999999999875321 1 22
Q ss_pred hHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 153 TSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 153 ~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
+..++.+++.+.| +.+++.+++..+...+.. ....++.+++.+++.
T Consensus 196 ~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~-~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 196 EDVGRFLLNRMAR-DLRTLFDVLDRLDKASMV-HQRKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH-HTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH-hCCCCcHHHHHHHhh
Confidence 3445788888865 888888888744443322 345799999988764
No 61
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.22 E-value=3.3e-11 Score=103.73 Aligned_cols=121 Identities=12% Similarity=0.202 Sum_probs=90.4
Q ss_pred hHHHHHHhc----------CCcEEEEecCCcccc-----------------cchHHHHHHHHHHHH-HhCCCcEEEEEec
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVAPM-----------------GSSGVTAIHKVFDWA-SSSRKGLVLFIDE 53 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~~~-----------------~g~~e~~l~~~f~~A-~~~~~p~Il~iDe 53 (242)
+++++++++ ++.++.++|..+.+. .+.+...++.+|... +...+|+||+|||
T Consensus 61 ~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE 140 (318)
T 3te6_A 61 LVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQN 140 (318)
T ss_dssp HHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEEC
T ss_pred HHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEec
Confidence 678888887 467899998775431 134566788888875 2223489999999
Q ss_pred ccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccc----ccHHHhcccc-cEEEeCCCCHHHHHHHHHH
Q psy4165 54 ADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQ----FDWAVNDRLD-EMVEFPLPTLNERERLVRL 128 (242)
Q Consensus 54 iD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~----ld~al~~Rfd-~~i~~~~P~~~~R~~Il~~ 128 (242)
+|.+. . +.++..|+.+.....++++||+++|..+. |++++.+||. ..|+|++++.++..+|++.
T Consensus 141 ~d~l~----~-------q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~ 209 (318)
T 3te6_A 141 PENLL----S-------EKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIIT 209 (318)
T ss_dssp CSSSC----C-------THHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHH
T ss_pred HHHhh----c-------chHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHH
Confidence 99997 1 23555666555556678999999998764 4555568997 5899999999999999999
Q ss_pred HHhcc
Q psy4165 129 YFDKF 133 (242)
Q Consensus 129 ~l~~~ 133 (242)
-+...
T Consensus 210 Rl~~~ 214 (318)
T 3te6_A 210 RLKSL 214 (318)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99764
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.20 E-value=1.6e-10 Score=110.45 Aligned_cols=157 Identities=14% Similarity=0.153 Sum_probs=105.9
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccc-------------cchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccc
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPM-------------GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS 67 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~-------------~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~ 67 (242)
++|+++|+.++.+|+.++++.+..+ .|..+. ..+....+... ++||||||+|.+-
T Consensus 503 ~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~-~~vl~lDEi~~~~--------- 570 (758)
T 1r6b_X 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHP-HAVLLLDEIEKAH--------- 570 (758)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCS-SEEEEEETGGGSC---------
T ss_pred HHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCcccc--chHHHHHHhCC-CcEEEEeCccccC---------
Confidence 4799999999999999999887542 132221 22334444444 7999999999873
Q ss_pred hHHHHHHHHHHHHhccC-----------CCCeEEEEecCCcc-------------------------cccHHHhcccccE
Q psy4165 68 ESLRATLNAFLYRTGEQ-----------SDKFMLVLASNTPQ-------------------------QFDWAVNDRLDEM 111 (242)
Q Consensus 68 ~~~~~~l~~lL~~l~~~-----------~~~v~vI~tTn~~~-------------------------~ld~al~~Rfd~~ 111 (242)
. .+++.|++.|+.. -.++++|+|||... .++|+|++||+..
T Consensus 571 ~---~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~ 647 (758)
T 1r6b_X 571 P---DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNI 647 (758)
T ss_dssp H---HHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEE
T ss_pred H---HHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcc
Confidence 2 2455566655421 13578999999854 7889999999999
Q ss_pred EEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhC--CCCCHHHHHHHHHH
Q psy4165 112 VEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT--EGLSGREIAKLGVA 177 (242)
Q Consensus 112 i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t--~g~s~adi~~lv~~ 177 (242)
|.|++|+.+++..|++.++.++...... .++.+ .++ +..++.|++.. .++..++++++++.
T Consensus 648 i~~~~l~~~~~~~i~~~~l~~~~~~~~~---~~~~~-~~~-~~a~~~l~~~~~~~~~g~R~l~~~i~~ 710 (758)
T 1r6b_X 648 IWFDHLSTDVIHQVVDKFIVELQVQLDQ---KGVSL-EVS-QEARNWLAEKGYDRAMGARPMARVIQD 710 (758)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHH---TTEEE-EEC-HHHHHHHHHHHCBTTTBTTTHHHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHHHHHHHHH---CCcEE-EeC-HHHHHHHHHhCCCcCCCchHHHHHHHH
Confidence 9999999999999999999754221110 00000 111 33446677643 34678899988863
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.19 E-value=4.7e-11 Score=114.14 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=102.4
Q ss_pred ChHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~l 77 (242)
++|+++|+.+ +.+|+.++++.+......+ -..++...+... ++||||||||.+- . .+++.|
T Consensus 536 ~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~---~~~l~~~~~~~~-~~vl~lDEi~~~~---------~---~~~~~L 599 (758)
T 3pxi_A 536 ELARALAESIFGDEESMIRIDMSEYMEKHSTS---GGQLTEKVRRKP-YSVVLLDAIEKAH---------P---DVFNIL 599 (758)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC------CHHHHHHCS-SSEEEEECGGGSC---------H---HHHHHH
T ss_pred HHHHHHHHHhcCCCcceEEEechhcccccccc---cchhhHHHHhCC-CeEEEEeCccccC---------H---HHHHHH
Confidence 3799999997 7899999999998754222 122233344343 7999999999872 2 344555
Q ss_pred HHHhcc-----------CCCCeEEEEecCCccc------------ccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccc
Q psy4165 78 LYRTGE-----------QSDKFMLVLASNTPQQ------------FDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFV 134 (242)
Q Consensus 78 L~~l~~-----------~~~~v~vI~tTn~~~~------------ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~ 134 (242)
|..|+. ...++++|+|||.+.. ++|+|++||+..|.|++|+.+++.+|++.++.++.
T Consensus 600 l~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~ 679 (758)
T 3pxi_A 600 LQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLT 679 (758)
T ss_dssp HHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHH
T ss_pred HHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHH
Confidence 555532 2345799999997554 88999999999999999999999999999997643
Q ss_pred cchhhhcccccccCCCChhHhHHHHHHh--CCCCCHHHHHHHHH
Q psy4165 135 LQPAAQGKRRLKVAPFDYTSLCSKIAHV--TEGLSGREIAKLGV 176 (242)
Q Consensus 135 ~~~~~~~~~~~~~~~~d~~~~l~~la~~--t~g~s~adi~~lv~ 176 (242)
...... +... .++ +..++.|++. ...+..++|++++.
T Consensus 680 ~~~~~~---~~~~-~~~-~~a~~~l~~~~~~~~~~~R~L~~~i~ 718 (758)
T 3pxi_A 680 KRLKEQ---DLSI-ELT-DAAKAKVAEEGVDLEYGARPLRRAIQ 718 (758)
T ss_dssp HHHHTT---TCEE-EEC-HHHHHHHHGGGCCTTTTTTTHHHHHH
T ss_pred HHHHhC---CCeE-EEC-HHHHHHHHHhCCCCCCCChHHHHHHH
Confidence 221110 0110 122 3344667664 23467788888886
No 64
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.18 E-value=1.3e-10 Score=102.10 Aligned_cols=175 Identities=14% Similarity=0.173 Sum_probs=102.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc--ccchH-HHHHHHHHHHHH----hCCCcEEEEEecccccccccCCCccchH--HH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP--MGSSG-VTAIHKVFDWAS----SSRKGLVLFIDEADAFLRKRSSETISES--LR 71 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~--~~g~~-e~~l~~~f~~A~----~~~~p~Il~iDeiD~l~~~r~~~~~~~~--~~ 71 (242)
++|+++|+.++.+|+.++++.+.. +.|+. +..+..+|..+. ... ++||||||+|.+...+........ ..
T Consensus 87 ~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEi~~l~~~~~~~~~~~~~~~~ 165 (376)
T 1um8_A 87 LMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQ-KGIVFIDEIDKISRLSENRSITRDVSGE 165 (376)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHT-TSEEEEETGGGC--------------CH
T ss_pred HHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcC-CeEEEEcCHHHHhhhcCCCceecccchH
Confidence 479999999999999999988763 33543 455666666432 223 799999999999876543221111 11
Q ss_pred HHHHHHHHHhccC---------------------CCCeEEEEecCC----------------------------------
Q psy4165 72 ATLNAFLYRTGEQ---------------------SDKFMLVLASNT---------------------------------- 96 (242)
Q Consensus 72 ~~l~~lL~~l~~~---------------------~~~v~vI~tTn~---------------------------------- 96 (242)
.+.+.||..|+.. ..++++|+|||.
T Consensus 166 ~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~ 245 (376)
T 1um8_A 166 GVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHL 245 (376)
T ss_dssp HHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGG
T ss_pred HHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhh
Confidence 3556666666522 145678888762
Q ss_pred -------cccccHHHhcccccEEEeCCCCHHHHHHHHHH----HHhccccchhhhcccccccCCCChhHhHHHHHHhCC-
Q psy4165 97 -------PQQFDWAVNDRLDEMVEFPLPTLNERERLVRL----YFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE- 164 (242)
Q Consensus 97 -------~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~----~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~- 164 (242)
...+.|.|.+||+..+.|++++.++...|+.. ++.++.......+ ..+. ++ +..+..|++...
T Consensus 246 ~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~-~~~~---~~-~~a~~~l~~~~~~ 320 (376)
T 1um8_A 246 VQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDE-VDLI---FE-EEAIKEIAQLALE 320 (376)
T ss_dssp CCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTT-CEEE---EC-HHHHHHHHHHHHH
T ss_pred cCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcC-ceEE---EC-HHHHHHHHHHhcc
Confidence 12367888899999999999999999999973 3221100000000 0111 11 334466766632
Q ss_pred -CCCHHHHHHHHHHHHHH
Q psy4165 165 -GLSGREIAKLGVAWQAS 181 (242)
Q Consensus 165 -g~s~adi~~lv~~a~~~ 181 (242)
+...++|++++..+...
T Consensus 321 ~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 321 RKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp TTCTGGGHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHH
Confidence 36788888888755443
No 65
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.18 E-value=1.7e-09 Score=94.54 Aligned_cols=177 Identities=12% Similarity=0.074 Sum_probs=118.2
Q ss_pred hHHHHHHhc----CCcEEEEecCCcccc-----------------cc-hHHHHHHHHHHHHHhCCCcEEEEEeccccccc
Q psy4165 2 FAKKLAHHS----GMDYAIMTGGDVAPM-----------------GS-SGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59 (242)
Q Consensus 2 lA~aiA~e~----~~~~~~v~~~~l~~~-----------------~g-~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~ 59 (242)
|++++++++ +.+++.+++....+. .| .....+..+........+|.||+|||+|.+.
T Consensus 60 l~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~- 138 (389)
T 1fnn_A 60 TLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA- 138 (389)
T ss_dssp HHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-
T ss_pred HHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-
Confidence 788999888 788999997665421 01 1222333333344434448999999999981
Q ss_pred ccCCCccchHHHHHHHHHHHHhccCC----CCeEEEEecCCc---ccccHHHhccccc-EEEeCCCCHHHHHHHHHHHHh
Q psy4165 60 KRSSETISESLRATLNAFLYRTGEQS----DKFMLVLASNTP---QQFDWAVNDRLDE-MVEFPLPTLNERERLVRLYFD 131 (242)
Q Consensus 60 ~r~~~~~~~~~~~~l~~lL~~l~~~~----~~v~vI~tTn~~---~~ld~al~~Rfd~-~i~~~~P~~~~R~~Il~~~l~ 131 (242)
...+..|+..+.... .++.+|++||.+ ..+++.+.+||.. .++|++++.++..++++..+.
T Consensus 139 -----------~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 139 -----------PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp -----------HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 124455555554222 478999999988 7788998899875 899999999999999999886
Q ss_pred ccccchhhhcccccccCCCChhHhHHHHHHhCCC--------CCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 132 KFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEG--------LSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g--------~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
.... ...++ +..++.+++.+.+ -.++.+.+++..+...+.......++.+++..++...
T Consensus 208 ~~~~-----------~~~~~-~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 208 AGLA-----------EGSYS-EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHBC-----------TTSSC-HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred hhcC-----------CCCCC-HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 4110 01222 3455788888842 2567777888754444444455678888888876654
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.16 E-value=1.1e-10 Score=111.43 Aligned_cols=149 Identities=13% Similarity=0.164 Sum_probs=99.3
Q ss_pred ChHHHHHHhc----------CCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchH
Q psy4165 1 MFAKKLAHHS----------GMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISES 69 (242)
Q Consensus 1 llA~aiA~e~----------~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~ 69 (242)
++|+++|+.+ +++++.+++ ..++ |+.+..++.+|..+.... |+||||| +.
T Consensus 216 ~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~-~~iLfiD---------~~------ 276 (758)
T 3pxi_A 216 AIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAG-NIILFID---------AA------ 276 (758)
T ss_dssp HHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCC-CCEEEEC---------C-------
T ss_pred HHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcC-CEEEEEc---------Cc------
Confidence 3799999997 889998887 4444 888999999999999876 9999999 11
Q ss_pred HHHHHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccc
Q psy4165 70 LRATLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRR 144 (242)
Q Consensus 70 ~~~~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~ 144 (242)
....+.|+..++ .+.+.+|++||... .+|+++.+||. .|+|+.|+.+++.+||+.++.++... .+
T Consensus 277 -~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~~~~------~~ 346 (758)
T 3pxi_A 277 -IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAH------HR 346 (758)
T ss_dssp --------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGG------SS
T ss_pred -hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHh------cC
Confidence 112233443343 55789999999988 79999999995 79999999999999999887653221 11
Q ss_pred cccCCCChhHhHHHHHHh-----CCCCCHHHHHHHHHHHHHHH
Q psy4165 145 LKVAPFDYTSLCSKIAHV-----TEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 145 ~~~~~~d~~~~l~~la~~-----t~g~s~adi~~lv~~a~~~~ 182 (242)
...+ +..+..++.. ++++.+.....++..+.+.+
T Consensus 347 ~~i~----~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~ 385 (758)
T 3pxi_A 347 VSIT----DDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKV 385 (758)
T ss_dssp CSCC----HHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHH
T ss_pred CCCC----HHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHH
Confidence 1111 2233444443 34677888888887554443
No 67
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.15 E-value=1.9e-10 Score=105.34 Aligned_cols=171 Identities=13% Similarity=0.151 Sum_probs=107.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHH-------HHHHHHHHHHH----hCCCcEEEEEecccccccccCCCccch
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGV-------TAIHKVFDWAS----SSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e-------~~l~~~f~~A~----~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
++|+++|+++|++++.++++++.+.. .... ..+..+|..+. ...+|+||||||+|.+.....
T Consensus 92 tla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~------ 165 (516)
T 1sxj_A 92 TAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR------ 165 (516)
T ss_dssp HHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST------
T ss_pred HHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH------
Confidence 37999999999999999999876532 1110 01223344331 123489999999999975321
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccC
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVA 148 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~ 148 (242)
..+..|+..++....++++|+++.....+++ + +|+...++|++|+.+++.+++...+.+. ++..+
T Consensus 166 ---~~l~~L~~~l~~~~~~iIli~~~~~~~~l~~-l-~~r~~~i~f~~~~~~~~~~~L~~i~~~~----------~~~i~ 230 (516)
T 1sxj_A 166 ---GGVGQLAQFCRKTSTPLILICNERNLPKMRP-F-DRVCLDIQFRRPDANSIKSRLMTIAIRE----------KFKLD 230 (516)
T ss_dssp ---THHHHHHHHHHHCSSCEEEEESCTTSSTTGG-G-TTTSEEEECCCCCHHHHHHHHHHHHHHH----------TCCCC
T ss_pred ---HHHHHHHHHHHhcCCCEEEEEcCCCCccchh-h-HhceEEEEeCCCCHHHHHHHHHHHHHHc----------CCCCC
Confidence 1234455555544555666666555455553 4 4445699999999999999998887652 22223
Q ss_pred CCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 149 PFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 149 ~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
+ ..+..|++.+. +|++.+++.++..+ .....++.+++.+++...
T Consensus 231 ~----~~l~~la~~s~----GdiR~~i~~L~~~~--~~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 231 P----NVIDRLIQTTR----GDIRQVINLLSTIS--TTTKTINHENINEISKAW 274 (516)
T ss_dssp T----THHHHHHHHTT----TCHHHHHHHHTHHH--HHSSCCCTTHHHHHHHHH
T ss_pred H----HHHHHHHHHcC----CcHHHHHHHHHHHH--hcCCCCchHHHHHHHHhh
Confidence 2 23478888864 46666666444333 345567777777666533
No 68
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.14 E-value=1.4e-09 Score=93.92 Aligned_cols=163 Identities=15% Similarity=0.077 Sum_probs=107.2
Q ss_pred hHHHHHHhcC------CcEEEEecCCcccccchHHHHHHHHHHHHH---------------hCCCcEEEEEecccccccc
Q psy4165 2 FAKKLAHHSG------MDYAIMTGGDVAPMGSSGVTAIHKVFDWAS---------------SSRKGLVLFIDEADAFLRK 60 (242)
Q Consensus 2 lA~aiA~e~~------~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~---------------~~~~p~Il~iDeiD~l~~~ 60 (242)
+|+++|++++ ..++.+++++... ...+++.+.... ....+.||||||+|.+.+
T Consensus 74 la~~la~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~- 147 (353)
T 1sxj_D 74 TILALTKELYGPDLMKSRILELNASDERG-----ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA- 147 (353)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEECSSSCCC-----HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-
T ss_pred HHHHHHHHhCCCcccccceEEEccccccc-----hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-
Confidence 6888888865 4588888877522 112222221111 112367999999999843
Q ss_pred cCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhh
Q psy4165 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQ 140 (242)
Q Consensus 61 r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~ 140 (242)
...+.|+..++.......+|++||.+..+++++++|+. .++|++|+.++...+++..+.+.+
T Consensus 148 -----------~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~------ 209 (353)
T 1sxj_D 148 -----------DAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQEN------ 209 (353)
T ss_dssp -----------HHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTT------
T ss_pred -----------HHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhC------
Confidence 12355666666556667788899999999999999997 899999999999999999886421
Q ss_pred cccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC--C-CccHHHHHHHH
Q psy4165 141 GKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED--G-VLTEAMVMSKV 199 (242)
Q Consensus 141 ~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~--~-~~~~~~~~~a~ 199 (242)
+. ++ +..++.+++.+.| .++.+.+++.. +...+.+. . .++.+++.+++
T Consensus 210 ----~~---i~-~~~l~~l~~~~~G-~~r~~~~~l~~--~~~~~~~~~~~~~It~~~v~~~~ 260 (353)
T 1sxj_D 210 ----VK---CD-DGVLERILDISAG-DLRRGITLLQS--ASKGAQYLGDGKNITSTQVEELA 260 (353)
T ss_dssp ----CC---CC-HHHHHHHHHHTSS-CHHHHHHHHHH--THHHHHHHCSCCCCCHHHHHHHH
T ss_pred ----CC---CC-HHHHHHHHHHcCC-CHHHHHHHHHH--HHHhcCCCccCccccHHHHHHHh
Confidence 11 22 3445888988875 45555555542 22222221 1 68888887664
No 69
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.10 E-value=3e-09 Score=92.55 Aligned_cols=135 Identities=19% Similarity=0.214 Sum_probs=97.3
Q ss_pred HHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhccc
Q psy4165 32 AIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRL 108 (242)
Q Consensus 32 ~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rf 108 (242)
.++.++..+.. ..++.||+|||+|.+.. ...+.|+..++.....+++|++|+.+..+++.+.+|+
T Consensus 103 ~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 170 (373)
T 1jr3_A 103 DTRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 (373)
T ss_dssp CHHHHHHHTTSCCSSSSSEEEEEECGGGSCH------------HHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHHHHhhccccCCeEEEEEECcchhcH------------HHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhhe
Confidence 35566665542 22379999999999832 2456677777777778999999999999999999998
Q ss_pred ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCC
Q psy4165 109 DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDG 188 (242)
Q Consensus 109 d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~ 188 (242)
..++|++|+.++..++++.++.+.+. .. + ...+..+++.+.| +++++.+++..+ ..++ .+
T Consensus 171 -~~i~~~~l~~~~~~~~l~~~~~~~~~----------~~---~-~~a~~~l~~~~~G-~~r~~~~~l~~~--~~~~--~~ 230 (373)
T 1jr3_A 171 -LQFHLKALDVEQIRHQLEHILNEEHI----------AH---E-PRALQLLARAAEG-SLRDALSLTDQA--IASG--DG 230 (373)
T ss_dssp -EEEECCCCCHHHHHHHHHHHHHHHTC----------CB---C-HHHHHHHHHHSSS-CHHHHHHHHHHH--HHHT--TT
T ss_pred -eEeeCCCCCHHHHHHHHHHHHHHcCC----------CC---C-HHHHHHHHHHCCC-CHHHHHHHHHHH--HHhc--CC
Confidence 59999999999999999999875322 11 1 3345788999876 788888888633 3332 34
Q ss_pred CccHHHHHHH
Q psy4165 189 VLTEAMVMSK 198 (242)
Q Consensus 189 ~~~~~~~~~a 198 (242)
.++.+++.+.
T Consensus 231 ~i~~~~v~~~ 240 (373)
T 1jr3_A 231 QVSTQAVSAM 240 (373)
T ss_dssp CBCHHHHHHH
T ss_pred cccHHHHHHH
Confidence 5666665443
No 70
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.10 E-value=8.2e-10 Score=93.95 Aligned_cols=163 Identities=15% Similarity=0.092 Sum_probs=105.1
Q ss_pred hHHHHHHhc-----CCcEEEEecCCcccccchHHHHHHHHHHHH-HhCCCcEEEEEecccccccccCCCccchHHHHHHH
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPMGSSGVTAIHKVFDWA-SSSRKGLVLFIDEADAFLRKRSSETISESLRATLN 75 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A-~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~ 75 (242)
+|+++|+++ +.+++.+++++..+.. .....+....... ....++.||+|||+|.+.. ...+
T Consensus 54 la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~ 120 (319)
T 2chq_A 54 TAIALARDLFGENWRDNFIEMNASDERGID-VVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQA 120 (319)
T ss_dssp HHHHHHHHHHTTCHHHHCEEEETTSTTCTT-TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------------HHHH
T ss_pred HHHHHHHHhcCCcccCCeEEEeCccccChH-HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------------HHHH
Confidence 688888886 4568888887653311 1111222221110 0112379999999999842 2345
Q ss_pred HHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 76 AFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 76 ~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
.|+..++..+.++.+|++||.+..+++++.+|+. .++|++|+.+++.++++.++.+.+. . ++ +..
T Consensus 121 ~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~----------~---i~-~~~ 185 (319)
T 2chq_A 121 ALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGV----------K---IT-EDG 185 (319)
T ss_dssp TTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCC----------C---BC-HHH
T ss_pred HHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCC----------C---CC-HHH
Confidence 5666677777788999999999999999999997 8999999999999999999875322 1 12 334
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
++.++..+.| +.+.+.+++. ..+.. .+.++.+++.+.
T Consensus 186 l~~l~~~~~G-~~r~~~~~l~---~~~~~--~~~i~~~~v~~~ 222 (319)
T 2chq_A 186 LEALIYISGG-DFRKAINALQ---GAAAI--GEVVDADTIYQI 222 (319)
T ss_dssp HHHHHHTTTT-CHHHHHHHHH---HHHHS--SSCBCHHHHHHH
T ss_pred HHHHHHHcCC-CHHHHHHHHH---HHHHc--CCCCCHHHHHHH
Confidence 5777776644 4444444443 33322 345666555443
No 71
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.09 E-value=1.9e-10 Score=90.00 Aligned_cols=111 Identities=13% Similarity=0.149 Sum_probs=81.2
Q ss_pred hHHHHHHhc----------CCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
+|+++++++ +.+++.+++..+.. .+ |.....+..++..+.....|+||||||+|.+.+.+.......
T Consensus 59 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~ 138 (187)
T 2p65_A 59 IVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGAL 138 (187)
T ss_dssp HHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSC
T ss_pred HHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccch
Confidence 688898886 88999998877652 23 667778899998888775589999999999986654221112
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCC
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPT 118 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~ 118 (242)
.....+..+ ++ ..++++|++||.+. .+|+++.+||+ .+++++|+
T Consensus 139 ~~~~~l~~~---~~--~~~~~ii~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 139 DAGNILKPM---LA--RGELRCIGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp CTHHHHHHH---HH--TTCSCEEEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred HHHHHHHHH---Hh--cCCeeEEEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 222233333 32 35688999999876 68999999999 59999986
No 72
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=2.3e-09 Score=91.32 Aligned_cols=161 Identities=13% Similarity=0.114 Sum_probs=108.9
Q ss_pred hHHHHHHhc-----CCcEEEEecCCcccccchHHHHHHHHHHHHH----h--CCCcEEEEEecccccccccCCCccchHH
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPMGSSGVTAIHKVFDWAS----S--SRKGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~----~--~~~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
+|+++|+++ +.+++.+++++..+ ...+++++.... . ..++.||+|||+|.+..
T Consensus 58 la~~l~~~l~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~----------- 121 (323)
T 1sxj_B 58 SVHCLAHELLGRSYADGVLELNASDDRG-----IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA----------- 121 (323)
T ss_dssp HHHHHHHHHHGGGHHHHEEEECTTSCCS-----HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-----------
T ss_pred HHHHHHHHhcCCcccCCEEEecCccccC-----hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-----------
Confidence 678888875 45688888766421 334555555444 1 11279999999999843
Q ss_pred HHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCC
Q psy4165 71 RATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPF 150 (242)
Q Consensus 71 ~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~ 150 (242)
...+.|+..++....++.+|++||.+..+++++.+|+. .++|++|+.++..++++..+.+.+ +..+
T Consensus 122 -~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~----------~~~~-- 187 (323)
T 1sxj_B 122 -GAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLED----------VKYT-- 187 (323)
T ss_dssp -HHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHT----------CCBC--
T ss_pred -HHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcC----------CCCC--
Confidence 12455666666666778899999999999999999997 999999999999999999886522 1111
Q ss_pred ChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 151 DYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 151 d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
+..+..+++.+.| +++.+.+++. ..... .+.++.+++.+.+.
T Consensus 188 --~~~~~~l~~~~~G-~~r~a~~~l~---~~~~~--~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 188 --NDGLEAIIFTAEG-DMRQAINNLQ---STVAG--HGLVNADNVFKIVD 229 (323)
T ss_dssp --HHHHHHHHHHHTT-CHHHHHHHHH---HHHHH--HSSBCHHHHHHHHT
T ss_pred --HHHHHHHHHHcCC-CHHHHHHHHH---HHHhc--CCCcCHHHHHHHHC
Confidence 3344778888754 4555555554 22222 24577777766543
No 73
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.07 E-value=1.9e-09 Score=93.12 Aligned_cols=147 Identities=15% Similarity=0.059 Sum_probs=93.0
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHH----hc------cCCCCeEEEEecCCcc-cccHHHhcccccEEEe
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYR----TG------EQSDKFMLVLASNTPQ-QFDWAVNDRLDEMVEF 114 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~----l~------~~~~~v~vI~tTn~~~-~ld~al~~Rfd~~i~~ 114 (242)
++||||||+|.+.. .....+..++.. +. ....++++|+|||... .++++|++||+..+++
T Consensus 145 ~~vl~iDEi~~l~~---------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l 215 (350)
T 1g8p_A 145 RGYLYIDECNLLED---------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEV 215 (350)
T ss_dssp TEEEEETTGGGSCH---------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEEC
T ss_pred CCEEEEeChhhCCH---------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEc
Confidence 68999999999842 222233333332 10 0123689999999754 8999999999988999
Q ss_pred CCC-CHHHHHHHHHHHHhccccch-------------------hhhcccccccCCCChhHhHHHHHHhCCC---CCHHHH
Q psy4165 115 PLP-TLNERERLVRLYFDKFVLQP-------------------AAQGKRRLKVAPFDYTSLCSKIAHVTEG---LSGREI 171 (242)
Q Consensus 115 ~~P-~~~~R~~Il~~~l~~~~~~~-------------------~~~~~~~~~~~~~d~~~~l~~la~~t~g---~s~adi 171 (242)
++| +.++|.+|++..+....... .......+ .++ +..++.+++...| -+.+.+
T Consensus 216 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~ls-~~~~~~l~~~~~~~~~~~~R~~ 291 (350)
T 1g8p_A 216 LSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKV---EAP-NTALYDCAALCIALGSDGLRGE 291 (350)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGC---BCC-HHHHHHHHHHHHHSSSCSHHHH
T ss_pred CCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCC---CCC-HHHHHHHHHHHHHhCCCCccHH
Confidence 999 78888899987532110000 00000011 122 2233445444432 377999
Q ss_pred HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 172 AKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 172 ~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
.++++.|.+.+.......++.+++.+++..+...
T Consensus 292 ~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 292 LTLLRSARALAALEGATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp HHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhh
Confidence 9999866666665666789999999998877533
No 74
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.05 E-value=4e-11 Score=82.82 Aligned_cols=69 Identities=17% Similarity=0.129 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 120 NERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 120 ~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
++|.+||+.+++++++. .++|+ +.||+.|+||||+||.++|++|...+.......++.+||..|+
T Consensus 1 ~~R~~Il~~~l~~~~~~-----------~~vdl----~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al 65 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLA-----------PEADL----DSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAY 65 (82)
T ss_dssp -------------CEEC-----------TTCCS----TTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCC-----------CcCCH----HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHH
Confidence 47999999999875432 35676 8999999999999999999976666665566689999999999
Q ss_pred HHHH
Q psy4165 200 EDSI 203 (242)
Q Consensus 200 ~~~~ 203 (242)
.++.
T Consensus 66 ~~v~ 69 (82)
T 2dzn_B 66 ATQV 69 (82)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 8875
No 75
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=1e-08 Score=87.36 Aligned_cols=142 Identities=17% Similarity=0.159 Sum_probs=96.3
Q ss_pred hHHHHHHhcC-----CcEEEEecCCcccccchHHHHHHHHHHH-HHhC----CCcEEEEEecccccccccCCCccchHHH
Q psy4165 2 FAKKLAHHSG-----MDYAIMTGGDVAPMGSSGVTAIHKVFDW-ASSS----RKGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 2 lA~aiA~e~~-----~~~~~v~~~~l~~~~g~~e~~l~~~f~~-A~~~----~~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
+|+++|++++ .+++.+++++..+ ...++..+.. +... .++.||+|||+|.+..
T Consensus 62 la~~l~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------ 124 (327)
T 1iqp_A 62 AALALARELFGENWRHNFLELNASDERG-----INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ------------ 124 (327)
T ss_dssp HHHHHHHHHHGGGHHHHEEEEETTCHHH-----HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH------------
T ss_pred HHHHHHHHhcCCcccCceEEeeccccCc-----hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH------------
Confidence 6888888864 3578888765421 1222222221 1111 2379999999999842
Q ss_pred HHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 72 ATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 72 ~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
...+.|+..++.....+.+|++||.+..+++++.+|+. .++|++|+.++..++++..+.+.+. ..+
T Consensus 125 ~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~----------~~~--- 190 (327)
T 1iqp_A 125 DAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGL----------ELT--- 190 (327)
T ss_dssp HHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTC----------EEC---
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCC----------CCC---
Confidence 23455666666666778899999999999999999997 8999999999999999998875321 111
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
+..++.++..+.| +++.+.+++.
T Consensus 191 -~~~~~~l~~~~~g-~~r~~~~~l~ 213 (327)
T 1iqp_A 191 -EEGLQAILYIAEG-DMRRAINILQ 213 (327)
T ss_dssp -HHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred -HHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3345778887754 5555555554
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.95 E-value=3.1e-09 Score=102.77 Aligned_cols=159 Identities=17% Similarity=0.158 Sum_probs=104.4
Q ss_pred ChHHHHHHhc---CCcEEEEecCCccccc------ch-----HHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMG------SS-----GVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI 66 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~------g~-----~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~ 66 (242)
++|++|++.+ +.+|+.++++.+.... |. +......+....+... ++||||||+|.+-
T Consensus 603 ~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~-~~vl~lDEi~~l~-------- 673 (854)
T 1qvr_A 603 ELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRP-YSVILFDEIEKAH-------- 673 (854)
T ss_dssp HHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCS-SEEEEESSGGGSC--------
T ss_pred HHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCC-CeEEEEecccccC--------
Confidence 4799999998 7899999998876531 11 0011123333344333 7999999999872
Q ss_pred chHHHHHHHHHHHHhccC-----------CCCeEEEEecCC--------------------------cccccHHHhcccc
Q psy4165 67 SESLRATLNAFLYRTGEQ-----------SDKFMLVLASNT--------------------------PQQFDWAVNDRLD 109 (242)
Q Consensus 67 ~~~~~~~l~~lL~~l~~~-----------~~~v~vI~tTn~--------------------------~~~ld~al~~Rfd 109 (242)
..+++.|+..|+.. -.++++|+|||. ...+.|+|++||+
T Consensus 674 ----~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~ 749 (854)
T 1qvr_A 674 ----PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLD 749 (854)
T ss_dssp ----HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCS
T ss_pred ----HHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcC
Confidence 23556666666522 135789999997 2346788889999
Q ss_pred cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCC--CCCHHHHHHHHHH
Q psy4165 110 EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE--GLSGREIAKLGVA 177 (242)
Q Consensus 110 ~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~--g~s~adi~~lv~~ 177 (242)
..+.|++|+.++...|++.++.++...... .++.. .++ +..++.|+...- .+..++|++++..
T Consensus 750 ~~i~~~pl~~edi~~i~~~~l~~~~~~~~~---~~~~~-~~~-~~a~~~L~~~~~~~~gn~R~L~~~i~~ 814 (854)
T 1qvr_A 750 EIVVFRPLTKEQIRQIVEIQLSYLRARLAE---KRISL-ELT-EAAKDFLAERGYDPVFGARPLRRVIQR 814 (854)
T ss_dssp BCCBCCCCCHHHHHHHHHHHHHHHHHHHHT---TTCEE-EEC-HHHHHHHHHHHCBTTTBTSTHHHHHHH
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHHHHHHHh---CCceE-EEC-HHHHHHHHHcCCCCCCChHHHHHHHHH
Confidence 999999999999999999999764322110 00000 122 344567777643 5688899998863
No 77
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.93 E-value=9.8e-10 Score=100.06 Aligned_cols=181 Identities=17% Similarity=0.075 Sum_probs=98.7
Q ss_pred ChHHHHHHhcCC--cEEEEecCC-----ccccc-chHHHHHHHHHHHHHhCC--CcEEEEEecccccccccCCCccchHH
Q psy4165 1 MFAKKLAHHSGM--DYAIMTGGD-----VAPMG-SSGVTAIHKVFDWASSSR--KGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 1 llA~aiA~e~~~--~~~~v~~~~-----l~~~~-g~~e~~l~~~f~~A~~~~--~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
+||++||+.++. +|..+++.- +.+.+ +..... ...|..+.... .|+|||||||+.+. .
T Consensus 56 ~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~---------~-- 123 (500)
T 3nbx_X 56 LIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG---------P-- 123 (500)
T ss_dssp HHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCC---------H--
T ss_pred HHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc---------H--
Confidence 479999998854 566655532 22211 111111 12232222110 26799999998752 2
Q ss_pred HHHHHHHHHHhcc----------CCCCeEEEEecCCccc---ccHHHhcccccEEEeCCCCH-HHHHHHHHHHHhccccc
Q psy4165 71 RATLNAFLYRTGE----------QSDKFMLVLASNTPQQ---FDWAVNDRLDEMVEFPLPTL-NERERLVRLYFDKFVLQ 136 (242)
Q Consensus 71 ~~~l~~lL~~l~~----------~~~~v~vI~tTn~~~~---ld~al~~Rfd~~i~~~~P~~-~~R~~Il~~~l~~~~~~ 136 (242)
...+.|+..|++ ..+..++|+|||.+.. +.+++++||...+++++|+. ++|..|++.+.......
T Consensus 124 -~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~ 202 (500)
T 3nbx_X 124 -AILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNP 202 (500)
T ss_dssp -HHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCC
T ss_pred -HHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCC
Confidence 234455555531 1112356888886433 44599999999999999987 78899998765321000
Q ss_pred hhhhccccc----------ccCCCCh-hHhHHHHHHhC---------CCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHH
Q psy4165 137 PAAQGKRRL----------KVAPFDY-TSLCSKIAHVT---------EGLSGREIAKLGVAWQASAYASEDGVLTEAMVM 196 (242)
Q Consensus 137 ~~~~~~~~~----------~~~~~d~-~~~l~~la~~t---------~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~ 196 (242)
... ...+ ....+.+ +..++.+++.. .|.|++.+..+++.|++.+....+..++.+|+.
T Consensus 203 ~~~--~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 203 VPD--ALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp SCT--TTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred CCc--cceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 000 0000 0001111 12234444433 589999999999988777776666666665554
No 78
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.88 E-value=1.9e-08 Score=90.66 Aligned_cols=130 Identities=12% Similarity=0.090 Sum_probs=97.8
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEe---------cC---CcccccHHHhcccccEEE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLA---------SN---TPQQFDWAVNDRLDEMVE 113 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~t---------Tn---~~~~ld~al~~Rfd~~i~ 113 (242)
|.|+||||+|.+. ....+.||+.|+++..++++++| |+ .+..|+|.+++||.. +.
T Consensus 296 ~~VliIDEa~~l~------------~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~-~~ 362 (456)
T 2c9o_A 296 PGVLFVDEVHMLD------------IECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI-IR 362 (456)
T ss_dssp ECEEEEESGGGCB------------HHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEE-EE
T ss_pred ceEEEEechhhcC------------HHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcce-ee
Confidence 4699999999993 34678888889877777555455 33 288999999999985 69
Q ss_pred eCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhC-CCCCHHHHHHHHHHHHHHHhhhcCCCccH
Q psy4165 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT-EGLSGREIAKLGVAWQASAYASEDGVLTE 192 (242)
Q Consensus 114 ~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t-~g~s~adi~~lv~~a~~~~~~~~~~~~~~ 192 (242)
|++|+.++..++++..+...+. . ++ +..+..++..+ .| +++..-.++..|...+...+.+.++.
T Consensus 363 ~~~~~~~e~~~iL~~~~~~~~~----------~---~~-~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~ 427 (456)
T 2c9o_A 363 TMLYTPQEMKQIIKIRAQTEGI----------N---IS-EEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEK 427 (456)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTC----------C---BC-HHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCH
T ss_pred CCCCCHHHHHHHHHHHHHHhCC----------C---CC-HHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCH
Confidence 9999999999999988764211 1 12 33446677776 54 88888888886555565567779999
Q ss_pred HHHHHHHHHHH
Q psy4165 193 AMVMSKVEDSI 203 (242)
Q Consensus 193 ~~~~~a~~~~~ 203 (242)
+++.+++.-+.
T Consensus 428 ~~v~~~~~~~~ 438 (456)
T 2c9o_A 428 EHVEEISELFY 438 (456)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHhc
Confidence 99999987654
No 79
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.77 E-value=1.8e-07 Score=80.81 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++++.+... +++.|++|||+|.+.. ...+.||+.+++.+.++++|++||.++.+++.+++
T Consensus 90 i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~------------~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~S 157 (334)
T 1a5t_A 90 VDAVREVTEKLNEHARLGGAKVVWVTDAALLTD------------AAANALLKTLEEPPAETWFFLATREPERLLATLRS 157 (334)
T ss_dssp HHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH------------HHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHHHHHhhccccCCcEEEEECchhhcCH------------HHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhh
Confidence 34577777766532 2369999999999842 24578888898888889999999999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHH
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l 130 (242)
|+. .++|++|+.++..++++...
T Consensus 158 Rc~-~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 158 RCR-LHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp TSE-EEECCCCCHHHHHHHHHHHC
T ss_pred cce-eeeCCCCCHHHHHHHHHHhc
Confidence 996 89999999999999888764
No 80
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.76 E-value=1.4e-07 Score=81.48 Aligned_cols=104 Identities=13% Similarity=0.197 Sum_probs=75.9
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHH
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERER 124 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~ 124 (242)
+|.||+|||+|.+- . ...+.|+..++....+..+|.+||.+..+.+++++|+ ..++|++|+.+++..
T Consensus 134 ~~~vlilDE~~~L~---------~---~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~ 200 (354)
T 1sxj_E 134 RYKCVIINEANSLT---------K---DAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEIST 200 (354)
T ss_dssp CCEEEEEECTTSSC---------H---HHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHH
T ss_pred CCeEEEEeCccccC---------H---HHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHH
Confidence 37899999999962 1 1234555556555566889999999999999999999 689999999999999
Q ss_pred HHHHHHhccccchhhhcccccccC-CCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 125 LVRLYFDKFVLQPAAQGKRRLKVA-PFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 125 Il~~~l~~~~~~~~~~~~~~~~~~-~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
+++..+.+. ++..+ + ..++.+++.+.| +.+++.+++.
T Consensus 201 ~l~~~~~~~----------~~~~~~~----~~l~~i~~~~~G-~~r~a~~~l~ 238 (354)
T 1sxj_E 201 ILSDVVTNE----------RIQLETK----DILKRIAQASNG-NLRVSLLMLE 238 (354)
T ss_dssp HHHHHHHHH----------TCEECCS----HHHHHHHHHHTT-CHHHHHHHHT
T ss_pred HHHHHHHHc----------CCCCCcH----HHHHHHHHHcCC-CHHHHHHHHH
Confidence 999988752 22233 2 224778887654 5555555554
No 81
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.74 E-value=3.1e-08 Score=92.10 Aligned_cols=182 Identities=13% Similarity=0.019 Sum_probs=111.2
Q ss_pred ChHHHHHHhcCCcEEEE----ecCCccccc-chH---HHH-HHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHH
Q psy4165 1 MFAKKLAHHSGMDYAIM----TGGDVAPMG-SSG---VTA-IHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v----~~~~l~~~~-g~~---e~~-l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
+||+++|+.++..++.. ++..+.... .+. +.. -...+..| . ++|+||||+|.+.+ ...
T Consensus 342 ~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~-~gil~IDEid~l~~---------~~q 408 (595)
T 3f9v_A 342 QMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA---D-GGIAVIDEIDKMRD---------EDR 408 (595)
T ss_dssp HHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---S-SSEECCTTTTCCCS---------HHH
T ss_pred HHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEec---C-CCcEEeehhhhCCH---------hHh
Confidence 47889998888766542 222332211 000 000 00112222 2 68999999999832 222
Q ss_pred HHHHHHHHHhcc-------------CCCCeEEEEecCCcc-------------cccHHHhccccc-EEEeCCCCHHHHHH
Q psy4165 72 ATLNAFLYRTGE-------------QSDKFMLVLASNTPQ-------------QFDWAVNDRLDE-MVEFPLPTLNERER 124 (242)
Q Consensus 72 ~~l~~lL~~l~~-------------~~~~v~vI~tTn~~~-------------~ld~al~~Rfd~-~i~~~~P~~~~R~~ 124 (242)
+.|+..|+. .+.++.||+|||.+. .|++++++|||. .+..+.|+.+ ...
T Consensus 409 ---~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~ 484 (595)
T 3f9v_A 409 ---VAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRE 484 (595)
T ss_dssp ---HHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHH
T ss_pred ---hhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHH
Confidence 344444431 134678999999987 899999999984 5556677878 888
Q ss_pred HHHHHHhccccchh---hhcc-----------c-ccccCCCChhHhHHHHHHh--------------CCCCCHHHHHHHH
Q psy4165 125 LVRLYFDKFVLQPA---AQGK-----------R-RLKVAPFDYTSLCSKIAHV--------------TEGLSGREIAKLG 175 (242)
Q Consensus 125 Il~~~l~~~~~~~~---~~~~-----------~-~~~~~~~d~~~~l~~la~~--------------t~g~s~adi~~lv 175 (242)
|.++.+........ .+.. . ...+++-. .+.|.+. .-+.|++.+.+++
T Consensus 485 i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea----~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~li 560 (595)
T 3f9v_A 485 LANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEA----KNLITDFFVEMRKKSSETPDSPILITPRQLEALI 560 (595)
T ss_dssp HHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCT----HHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHH
T ss_pred HHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHHHHHhhccCCCccccccHHHHHHHH
Confidence 88888764321000 0000 0 00111111 1334443 3578999999999
Q ss_pred HHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 176 VAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
+.|++.+.......++.+|+.+|+.-..
T Consensus 561 rla~a~A~l~~~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 561 RISEAYAKMALKAEVTREDAERAINIMR 588 (595)
T ss_dssp HHHHHHHHTTSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCHHHHHHHHHHHH
Confidence 9888888878888999999999987554
No 82
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.72 E-value=3.9e-08 Score=84.01 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=91.7
Q ss_pred ChHHHHHHhc---CCcEEEEecCCccccc------ch-------HHHHHHHHHHHHHhCCCcEEEEEecccccccccCCC
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMG------SS-------GVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE 64 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~------g~-------~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~ 64 (242)
++|++|++.+ +.||+.++|+.+.... |. ........|..|. +++|||||||.+..
T Consensus 40 ~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~----~g~L~LDEi~~l~~----- 110 (304)
T 1ojl_A 40 LVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD----GGTLFLDEIGDISP----- 110 (304)
T ss_dssp HHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHT----TSEEEEESCTTCCH-----
T ss_pred HHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcC----CCEEEEeccccCCH-----
Confidence 4799999965 6799999998874210 00 0001123344443 58999999999942
Q ss_pred ccchHHHHHHHHHHHHhccC-----------CCCeEEEEecCCc-------ccccHHHhcccc-cEEEeCCCC--HHHHH
Q psy4165 65 TISESLRATLNAFLYRTGEQ-----------SDKFMLVLASNTP-------QQFDWAVNDRLD-EMVEFPLPT--LNERE 123 (242)
Q Consensus 65 ~~~~~~~~~l~~lL~~l~~~-----------~~~v~vI~tTn~~-------~~ld~al~~Rfd-~~i~~~~P~--~~~R~ 123 (242)
.. ...|+..++.. ...+.+|+|||.. ..+++.|..||. ..|++|+.. .++..
T Consensus 111 ----~~---q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~ 183 (304)
T 1ojl_A 111 ----LM---QVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIP 183 (304)
T ss_dssp ----HH---HHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHH
T ss_pred ----HH---HHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHH
Confidence 22 23344444321 2358899999975 235666777775 334455444 45556
Q ss_pred HHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHH
Q psy4165 124 RLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMV 195 (242)
Q Consensus 124 ~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~ 195 (242)
.++++++.++.... +.....++ ...++.+....-.-+.++|++++. .++.......++.+++
T Consensus 184 ~l~~~~l~~~~~~~------~~~~~~~s-~~a~~~L~~~~wpGnvReL~~~l~---~~~~~~~~~~i~~~~l 245 (304)
T 1ojl_A 184 LLADHFLRRFAERN------RKVVKGFT-PQAMDLLIHYDWPGNIRELENAIE---RAVVLLTGEYISEREL 245 (304)
T ss_dssp HHHHHHHHHHHHHT------TCCCCCBC-HHHHHHHHHCCCSSHHHHHHHHHH---HHHHHCCSSSBCGGGS
T ss_pred HHHHHHHHHHHHHh------ccCccCCC-HHHHHHHHcCCCCCCHHHHHHHHH---HHHHhCCCCcccHHhh
Confidence 68888876542211 11111222 233455665541224556666665 3333333445555554
No 83
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.72 E-value=1.2e-06 Score=76.90 Aligned_cols=139 Identities=16% Similarity=0.127 Sum_probs=90.1
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccC---C--CCeEEEEecCCcc---ccc---HHHhcccccEEE
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQ---S--DKFMLVLASNTPQ---QFD---WAVNDRLDEMVE 113 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~---~--~~v~vI~tTn~~~---~ld---~al~~Rfd~~i~ 113 (242)
+|.||+|||+|.+...+.. . ...+..++..+... . .++.+|++||.++ .++ +.+.+||...++
T Consensus 138 ~~~llvlDe~~~l~~~~~~---~---~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 211 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRI---A---AEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLH 211 (412)
T ss_dssp CEEEEEEESTHHHHSCTTS---C---HHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEE
T ss_pred CeEEEEEeCHHHHhhccCc---c---hHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeee
Confidence 3899999999999643211 1 12333344333321 3 6788999988665 445 667778877799
Q ss_pred eCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCC------CCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE------GLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 114 ~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~------g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
+++++.++..++++..+..... ...++ ...+..+++.+. | .+..+..++..+...+.....
T Consensus 212 l~~l~~~e~~~ll~~~~~~~~~-----------~~~~~-~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~ 278 (412)
T 1w5s_A 212 LPAYKSRELYTILEQRAELGLR-----------DTVWE-PRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGR 278 (412)
T ss_dssp CCCCCHHHHHHHHHHHHHHHBC-----------TTSCC-HHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTC
T ss_pred eCCCCHHHHHHHHHHHHHhcCC-----------CCCCC-hHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999988764210 01122 334577888887 5 577788888744433333444
Q ss_pred CCccHHHHHHHHHHH
Q psy4165 188 GVLTEAMVMSKVEDS 202 (242)
Q Consensus 188 ~~~~~~~~~~a~~~~ 202 (242)
..++.+++..++...
T Consensus 279 ~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 279 DSLSEDLVRKAVSEN 293 (412)
T ss_dssp SSCCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHH
Confidence 567888877766543
No 84
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.66 E-value=1.4e-07 Score=78.47 Aligned_cols=119 Identities=18% Similarity=0.153 Sum_probs=69.8
Q ss_pred ChHHHHHHhcC---CcEEEEecCCccccc------chHHHH-------HHHHHHHHHhCCCcEEEEEecccccccccCCC
Q psy4165 1 MFAKKLAHHSG---MDYAIMTGGDVAPMG------SSGVTA-------IHKVFDWASSSRKGLVLFIDEADAFLRKRSSE 64 (242)
Q Consensus 1 llA~aiA~e~~---~~~~~v~~~~l~~~~------g~~e~~-------l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~ 64 (242)
++|+++++.++ .+|+.++++.+.... |..... ....|..+ . +.+|||||+|.+..
T Consensus 44 ~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~-~~~l~lDEi~~l~~----- 114 (265)
T 2bjv_A 44 LIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---D-GGTLFLDELATAPM----- 114 (265)
T ss_dssp HHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHT---T-TSEEEEESGGGSCH-----
T ss_pred HHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhc---C-CcEEEEechHhcCH-----
Confidence 37999999875 689999998873210 100000 01112222 2 68999999999842
Q ss_pred ccchHHHHHHHHHHHHhc--------cCCCCeEEEEecCCc-------ccccHHHhcccc-cEEEeCCCCH--HHHHHHH
Q psy4165 65 TISESLRATLNAFLYRTG--------EQSDKFMLVLASNTP-------QQFDWAVNDRLD-EMVEFPLPTL--NERERLV 126 (242)
Q Consensus 65 ~~~~~~~~~l~~lL~~l~--------~~~~~v~vI~tTn~~-------~~ld~al~~Rfd-~~i~~~~P~~--~~R~~Il 126 (242)
.....+..++..-. ....++.+|+|||.+ ..++++|..||+ ..|++|+.+. ++...++
T Consensus 115 ----~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~ 190 (265)
T 2bjv_A 115 ----MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMA 190 (265)
T ss_dssp ----HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHH
T ss_pred ----HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHH
Confidence 22333333333210 012357899999974 246788999996 3455555443 5566677
Q ss_pred HHHHhc
Q psy4165 127 RLYFDK 132 (242)
Q Consensus 127 ~~~l~~ 132 (242)
+.++.+
T Consensus 191 ~~~l~~ 196 (265)
T 2bjv_A 191 EYFAIQ 196 (265)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777665
No 85
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.65 E-value=3.4e-07 Score=79.05 Aligned_cols=161 Identities=12% Similarity=0.098 Sum_probs=101.8
Q ss_pred hHHHHHHhcCC-----cEEEEecCCcccccchHHHHHHHHHHHHHh-C----CCcEEEEEecccccccccCCCccchHHH
Q psy4165 2 FAKKLAHHSGM-----DYAIMTGGDVAPMGSSGVTAIHKVFDWASS-S----RKGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 2 lA~aiA~e~~~-----~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~-~----~~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
+|+++|+.+.. .++.++.++..+ ...+++.+..... . .++.|++|||+|.+..
T Consensus 62 la~~la~~l~~~~~~~~~~~~~~~~~~~-----~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~------------ 124 (340)
T 1sxj_C 62 TIVALAREIYGKNYSNMVLELNASDDRG-----IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN------------ 124 (340)
T ss_dssp HHHHHHHHHHTTSHHHHEEEECTTSCCS-----HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH------------
T ss_pred HHHHHHHHHcCCCccceEEEEcCccccc-----HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH------------
Confidence 68888888643 467777665321 2233333332221 1 1268999999999842
Q ss_pred HHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 72 ATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 72 ~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
...+.|+..++..+....+|++||.+..+.+++.+|+. .+.|++++.++..+++...+... ++.++
T Consensus 125 ~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~----------~~~i~--- 190 (340)
T 1sxj_C 125 AAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHE----------KLKLS--- 190 (340)
T ss_dssp HHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTT----------TCCBC---
T ss_pred HHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHc----------CCCCC---
Confidence 23456666677667777888999999999999999997 88999999999999998888542 11111
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC---CCccHHHHHHH
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED---GVLTEAMVMSK 198 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~---~~~~~~~~~~a 198 (242)
+..+..++..+ ++|++.+++..+........ ..++.+++...
T Consensus 191 -~~~~~~i~~~s----~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~ 235 (340)
T 1sxj_C 191 -PNAEKALIELS----NGDMRRVLNVLQSCKATLDNPDEDEISDDVIYEC 235 (340)
T ss_dssp -HHHHHHHHHHH----TTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHH
T ss_pred -HHHHHHHHHHc----CCCHHHHHHHHHHHHHhcCCcccccccHHHHHHH
Confidence 22345666654 44666655533333222221 15676666543
No 86
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=3.6e-07 Score=78.13 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=85.5
Q ss_pred hHHHHHHhc------CCcEEEEecCCcccccchHHHHHHHHHHHHHhCC---CcEEEEEecccccccccCCCccchHHHH
Q psy4165 2 FAKKLAHHS------GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSR---KGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 2 lA~aiA~e~------~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~---~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
+|+++|+.+ ..+++.+++++- .-+...++++++.+.... +..|++|||+|.+.. .
T Consensus 34 ~a~~la~~~~~~~~~~~d~~~l~~~~~----~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~------------~ 97 (305)
T 2gno_A 34 VSLELPEYVEKFPPKASDVLEIDPEGE----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ------------Q 97 (305)
T ss_dssp HHHHHHHHHHTSCCCTTTEEEECCSSS----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH------------H
T ss_pred HHHHHHHhCchhhccCCCEEEEcCCcC----CCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH------------H
Confidence 578888864 346777776531 123445778888776431 247999999999932 3
Q ss_pred HHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHH
Q psy4165 73 TLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 73 ~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l 130 (242)
..+.||+.|++++..+++|++||.+..|.|++++| .++|++|+.++..+.++..+
T Consensus 98 a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 98 AANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 46789999988888889999999999999999999 89999999999999888875
No 87
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.44 E-value=8.5e-06 Score=72.91 Aligned_cols=95 Identities=19% Similarity=0.235 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhcc----------CCCCeEEEEec----C
Q psy4165 30 VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGE----------QSDKFMLVLAS----N 95 (242)
Q Consensus 30 e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~----------~~~~v~vI~tT----n 95 (242)
+...+.....|.. ..|||+||||.++....+....-....+...||.-|+. ..++|++|+|. +
T Consensus 238 ~~~~~~ai~~ae~---~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~ 314 (444)
T 1g41_A 238 EELKQKAIDAVEQ---NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVA 314 (444)
T ss_dssp HHHHHHHHHHHHH---HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSC
T ss_pred HHHHHHHHHHhcc---CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccC
Confidence 3344455555542 36999999999987644222111122355677777753 35679999887 3
Q ss_pred CcccccHHHhcccccEEEeCCCCHHHHHHHHH
Q psy4165 96 TPQQFDWAVNDRLDEMVEFPLPTLNERERLVR 127 (242)
Q Consensus 96 ~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~ 127 (242)
.|.++-|.|++||+..|+|+.++.++..+|+.
T Consensus 315 ~~~dlipel~~R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 315 RPSDLIPELQGRLPIRVELTALSAADFERILT 346 (444)
T ss_dssp CGGGSCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred ChhhcchHHhcccceeeeCCCCCHHHHHHHHH
Confidence 45556689999999999999999999999993
No 88
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.30 E-value=2.7e-06 Score=90.10 Aligned_cols=123 Identities=16% Similarity=0.216 Sum_probs=84.2
Q ss_pred ChH-HHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHh--------------CCCcEEEEEecccccccccCCCc
Q psy4165 1 MFA-KKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASS--------------SRKGLVLFIDEADAFLRKRSSET 65 (242)
Q Consensus 1 llA-~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~--------------~~~p~Il~iDeiD~l~~~r~~~~ 65 (242)
|+| +++++..+.+++.++.+...+ ...+...+...-. ..+++||||||+|.-...+-+
T Consensus 1282 ~la~~~l~~~~~~~~~~infsa~ts-----~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg-- 1354 (2695)
T 4akg_A 1282 MIMNNALRNSSLYDVVGINFSKDTT-----TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYG-- 1354 (2695)
T ss_dssp HHHHHHHHSCSSCEEEEEECCTTCC-----HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSS--
T ss_pred HHHHHHHhcCCCCceEEEEeecCCC-----HHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccccccC--
Confidence 356 556666678888888776532 2344555543310 122589999999974433322
Q ss_pred cchHHHHHHHHHHHHh---ccCC------CCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHh
Q psy4165 66 ISESLRATLNAFLYRT---GEQS------DKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFD 131 (242)
Q Consensus 66 ~~~~~~~~l~~lL~~l---~~~~------~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~ 131 (242)
.......+.+++..- +... .++.+|||||+|. .|++++++|| ..++++.|+.+++..|+..++.
T Consensus 1355 -~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1355 -SQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp -CCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 233455666666431 1111 2489999999994 8999999999 6999999999999999999986
Q ss_pred c
Q psy4165 132 K 132 (242)
Q Consensus 132 ~ 132 (242)
.
T Consensus 1433 ~ 1433 (2695)
T 4akg_A 1433 A 1433 (2695)
T ss_dssp H
T ss_pred H
Confidence 5
No 89
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.29 E-value=7.1e-07 Score=67.62 Aligned_cols=94 Identities=10% Similarity=0.065 Sum_probs=61.1
Q ss_pred ChHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~l 77 (242)
++|++|++.+ +.||+ ++++.+... ......|..+. +++|||||+|.+.. .. ...|
T Consensus 39 ~lA~~i~~~~~~~~~~~v-~~~~~~~~~-----~~~~~~~~~a~----~g~l~ldei~~l~~---------~~---q~~L 96 (145)
T 3n70_A 39 TGARYLHQFGRNAQGEFV-YRELTPDNA-----PQLNDFIALAQ----GGTLVLSHPEHLTR---------EQ---QYHL 96 (145)
T ss_dssp HHHHHHHHSSTTTTSCCE-EEECCTTTS-----SCHHHHHHHHT----TSCEEEECGGGSCH---------HH---HHHH
T ss_pred HHHHHHHHhCCccCCCEE-EECCCCCcc-----hhhhcHHHHcC----CcEEEEcChHHCCH---------HH---HHHH
Confidence 4799999987 78999 999887543 23445566664 68999999999842 22 2344
Q ss_pred HHHhccCCCCeEEEEecCCcc-------cccHHHhcccc-cEEEeCC
Q psy4165 78 LYRTGEQSDKFMLVLASNTPQ-------QFDWAVNDRLD-EMVEFPL 116 (242)
Q Consensus 78 L~~l~~~~~~v~vI~tTn~~~-------~ld~al~~Rfd-~~i~~~~ 116 (242)
+..|......+.+|+|||.+- .+.+.+..|+. ..|++|+
T Consensus 97 l~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lPp 143 (145)
T 3n70_A 97 VQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLP 143 (145)
T ss_dssp HHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECCC
T ss_pred HHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCCC
Confidence 444555555678899998642 34455554432 2455554
No 90
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.18 E-value=1.7e-06 Score=65.37 Aligned_cols=94 Identities=9% Similarity=0.181 Sum_probs=60.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
++|+++++.++ +|+.++++.+.. .....+|..+. +.+|||||+|.+.. .....+..++..
T Consensus 42 ~lA~~i~~~~~-~~~~~~~~~~~~------~~~~~~~~~a~----~~~l~lDei~~l~~---------~~q~~Ll~~l~~ 101 (143)
T 3co5_A 42 TVARYFHKNGT-PWVSPARVEYLI------DMPMELLQKAE----GGVLYVGDIAQYSR---------NIQTGITFIIGK 101 (143)
T ss_dssp HHHGGGCCTTS-CEECCSSTTHHH------HCHHHHHHHTT----TSEEEEEECTTCCH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CeEEechhhCCh------HhhhhHHHhCC----CCeEEEeChHHCCH---------HHHHHHHHHHHh
Confidence 37889998888 999999987633 22455666554 68999999999843 222233333322
Q ss_pred hccCCCCeEEEEecCCc-cc----ccHHHhccc-ccEEEeCC
Q psy4165 81 TGEQSDKFMLVLASNTP-QQ----FDWAVNDRL-DEMVEFPL 116 (242)
Q Consensus 81 l~~~~~~v~vI~tTn~~-~~----ld~al~~Rf-d~~i~~~~ 116 (242)
. ...++.+|+|||.+ .. +++.+..|| ...|++|+
T Consensus 102 ~--~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPp 141 (143)
T 3co5_A 102 A--ERCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIPP 141 (143)
T ss_dssp H--TTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEECC
T ss_pred C--CCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCCC
Confidence 2 24557888888854 22 566667664 44667665
No 91
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.10 E-value=2.5e-05 Score=72.63 Aligned_cols=138 Identities=20% Similarity=0.208 Sum_probs=84.7
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhc----c--------------CCCCeEEEEecCCc--ccccHHHh
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG----E--------------QSDKFMLVLASNTP--QQFDWAVN 105 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~----~--------------~~~~v~vI~tTn~~--~~ld~al~ 105 (242)
+.+|||||+|.+- ......+..+|..-. . .+..+.||+|||+. ..++++|+
T Consensus 202 ~gvL~LDEi~~l~---------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~ 272 (604)
T 3k1j_A 202 KGVLFIDEIATLS---------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALR 272 (604)
T ss_dssp TSEEEETTGGGSC---------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHH
T ss_pred CCEEEEechhhCC---------HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHH
Confidence 7899999999982 223333333333210 0 01357899999987 78999999
Q ss_pred cccc---cEEEeCCC---CHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHh---CCCC------CHHH
Q psy4165 106 DRLD---EMVEFPLP---TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHV---TEGL------SGRE 170 (242)
Q Consensus 106 ~Rfd---~~i~~~~P---~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~---t~g~------s~ad 170 (242)
+||+ ..++|+.. +.+....+++.+....... .....++ +..+..|.+. ..|- +.++
T Consensus 273 ~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~ls-~eAl~~Li~~~~r~~g~r~~l~~~~R~ 343 (604)
T 3k1j_A 273 SRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRD--------GKIPHFT-KEAVEEIVREAQKRAGRKGHLTLRLRD 343 (604)
T ss_dssp HHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHH--------CSSCCBB-HHHHHHHHHHHHHTTCSTTEEECCHHH
T ss_pred HHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhc--------cCcccCC-HHHHHHHHHHHhhhhccccccccCHHH
Confidence 9997 45655432 4556666665554432110 0011222 2233444443 3563 7999
Q ss_pred HHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 171 IAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 171 i~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
+.++++.|.+.+.......++.+++.++++.
T Consensus 344 l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 344 LGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 9999996655555556668999999999864
No 92
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.01 E-value=8.7e-06 Score=83.10 Aligned_cols=102 Identities=12% Similarity=0.018 Sum_probs=72.4
Q ss_pred ChHHHHHHhcC---CcEEEEecCCcc------------ccc-ch----HHHHHHHHHHHHHhCCCcEEEEEecccccccc
Q psy4165 1 MFAKKLAHHSG---MDYAIMTGGDVA------------PMG-SS----GVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60 (242)
Q Consensus 1 llA~aiA~e~~---~~~~~v~~~~l~------------~~~-g~----~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~ 60 (242)
+||+++|.+.+ -|.++++..... ++| ++ +|+.++.+|..|+... ||+||+|++|+|++.
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~-~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA-VDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC-CSEEEESCGGGCCCH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcC-CeEEEeCchHhcCcc
Confidence 57888888764 455555554432 333 67 8999999999999888 999999999999998
Q ss_pred cC---CCc--cchHHHHHHHHHHHHhc--cCCCCeEEEEecCCcccccHHH
Q psy4165 61 RS---SET--ISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV 104 (242)
Q Consensus 61 r~---~~~--~~~~~~~~l~~lL~~l~--~~~~~v~vI~tTn~~~~ld~al 104 (242)
+. ... ..+...++++++|.+|+ ....+|+|| +||+..+=..++
T Consensus 1176 ~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~~~~~~~~ 1225 (1706)
T 3cmw_A 1176 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQIRMKIGVM 1225 (1706)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECEEECTTCC
T ss_pred cccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccccccchhe
Confidence 43 211 12456678999999996 233456666 788765443333
No 93
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.94 E-value=0.00011 Score=65.95 Aligned_cols=141 Identities=14% Similarity=0.030 Sum_probs=84.0
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhc---------cCCCCeEEEEecCCcc-----------cccHHHh
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG---------EQSDKFMLVLASNTPQ-----------QFDWAVN 105 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~---------~~~~~v~vI~tTn~~~-----------~ld~al~ 105 (242)
..|+|+|||+.+- . .....|+.-|+ ..+.++.||||+|... .|+++++
T Consensus 301 gGvl~lDEIn~~~---------~---~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alL 368 (506)
T 3f8t_A 301 GGILAVDHLEGAP---------E---PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFL 368 (506)
T ss_dssp TSEEEEECCTTCC---------H---HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHH
T ss_pred CCeeehHhhhhCC---------H---HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHh
Confidence 4799999999983 2 23344555453 2245689999999875 8999999
Q ss_pred cccccEEE-eCCCCHHHH---------HHHHHHHHhccc-cchhhhcccccccCC--CChhHh-HHHH--H--H------
Q psy4165 106 DRLDEMVE-FPLPTLNER---------ERLVRLYFDKFV-LQPAAQGKRRLKVAP--FDYTSL-CSKI--A--H------ 161 (242)
Q Consensus 106 ~Rfd~~i~-~~~P~~~~R---------~~Il~~~l~~~~-~~~~~~~~~~~~~~~--~d~~~~-l~~l--a--~------ 161 (242)
+|||..+. ++.|+.+.- .+.++.|..... .. -...+++ .++-.. ...+ . .
T Consensus 369 DRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~------~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~ 442 (506)
T 3f8t_A 369 SHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREH------PAPELTEEARKRLEHWYETRREEVEERLGMGL 442 (506)
T ss_dssp TTCSEEEETTC--------------CCHHHHHHHHHHHHHHC------SCCEECHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcC------CCceeCHHHHHHHHHHHHHHhcCccccccccc
Confidence 99987554 455654432 122333332110 00 0111111 110000 0001 0 0
Q ss_pred hCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Q psy4165 162 VTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 162 ~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~ 204 (242)
..-|.|++.+..+++-|++.|....+..++.+|+..|+.-+..
T Consensus 443 ~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 443 PTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDW 485 (506)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHH
Confidence 2458999999999999999999899999999999999876643
No 94
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.86 E-value=0.00027 Score=62.05 Aligned_cols=170 Identities=17% Similarity=0.139 Sum_probs=90.5
Q ss_pred hHHHHHHhcC---CcEEEEecCCcccccchHHHH---------------HHHHHHHHHhCCCcEEEEEecccccccccCC
Q psy4165 2 FAKKLAHHSG---MDYAIMTGGDVAPMGSSGVTA---------------IHKVFDWASSSRKGLVLFIDEADAFLRKRSS 63 (242)
Q Consensus 2 lA~aiA~e~~---~~~~~v~~~~l~~~~g~~e~~---------------l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~ 63 (242)
+|++|....+ .||+.++|+.+.... .+.. -...|+.|. +.+||||||+.+-
T Consensus 176 lAr~ih~~s~r~~~~fv~v~~~~~~~~~--~~~elfg~~~g~~tga~~~~~g~~~~a~----~gtlfldei~~l~----- 244 (387)
T 1ny5_A 176 VARLIHKLSDRSKEPFVALNVASIPRDI--FEAELFGYEKGAFTGAVSSKEGFFELAD----GGTLFLDEIGELS----- 244 (387)
T ss_dssp HHHHHHHHSTTTTSCEEEEETTTSCHHH--HHHHHHCBCTTSSTTCCSCBCCHHHHTT----TSEEEEESGGGCC-----
T ss_pred HHHHHHHhcCCCCCCeEEEecCCCCHHH--HHHHhcCCCCCCCCCcccccCCceeeCC----CcEEEEcChhhCC-----
Confidence 6777877654 699999998873210 0000 112233332 5799999999993
Q ss_pred CccchHHHHHHHHHHHHh-----cc---CCCCeEEEEecCCc-------ccccHHHhccc-ccEEEeCCCC--HHHHHHH
Q psy4165 64 ETISESLRATLNAFLYRT-----GE---QSDKFMLVLASNTP-------QQFDWAVNDRL-DEMVEFPLPT--LNERERL 125 (242)
Q Consensus 64 ~~~~~~~~~~l~~lL~~l-----~~---~~~~v~vI~tTn~~-------~~ld~al~~Rf-d~~i~~~~P~--~~~R~~I 125 (242)
...+..+..+|..- +. ....+-+|+|||.. ..+.+.|.-|+ ...|++|+.. .++...+
T Consensus 245 ----~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l 320 (387)
T 1ny5_A 245 ----LEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPL 320 (387)
T ss_dssp ----HHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHH
Confidence 33444455555431 11 11247799999863 12333334333 3345555542 3677778
Q ss_pred HHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCC--HHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 126 VRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLS--GREIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 126 l~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s--~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
+++++.++.... +.+...++ ...++.+... .|. .++|++++. .++.....+.++.+++-..
T Consensus 321 ~~~~l~~~~~~~------~~~~~~~~-~~a~~~l~~~--~wpGNvreL~~~i~---~~~~~~~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 321 ANHFLKKFSRKY------AKEVEGFT-KSAQELLLSY--PWYGNVRELKNVIE---RAVLFSEGKFIDRGELSCL 383 (387)
T ss_dssp HHHHHHHHHHHT------TCCCCEEC-HHHHHHHHHS--CCTTHHHHHHHHHH---HHHHHCCSSEECHHHHHHH
T ss_pred HHHHHHHHHHHc------CCCCCCCC-HHHHHHHHhC--CCCcHHHHHHHHHH---HHHHhCCCCcCcHHHCcHh
Confidence 888887642211 11111222 2233444444 343 347777775 3333334557888777543
No 95
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.71 E-value=0.00069 Score=58.13 Aligned_cols=138 Identities=19% Similarity=0.146 Sum_probs=87.2
Q ss_pred HHHHHHHHHHh---CCCcEEEEEecccc-cccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCC------ccccc
Q psy4165 32 AIHKVFDWASS---SRKGLVLFIDEADA-FLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNT------PQQFD 101 (242)
Q Consensus 32 ~l~~~f~~A~~---~~~p~Il~iDeiD~-l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~------~~~ld 101 (242)
.++++++.+.. .++.-|++|||+|. +.. ...+.|+..+++.+..+++|.+|+. ...+.
T Consensus 60 ~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~------------~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~ 127 (343)
T 1jr3_D 60 DWNAIFSLCQAMSLFASRQTLLLLLPENGPNA------------AINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWF 127 (343)
T ss_dssp CHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT------------THHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHH
T ss_pred CHHHHHHHhcCcCCccCCeEEEEECCCCCCCh------------HHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHH
Confidence 35556655543 23368999999988 621 1346677777765555566655544 34688
Q ss_pred HHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy4165 102 WAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQAS 181 (242)
Q Consensus 102 ~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~ 181 (242)
+++.+|.. .+++.+|+..+....++..+.+.+.. .+ ...++.+++.++| +.+++.+.+. +..
T Consensus 128 ~~i~sr~~-~~~~~~l~~~~l~~~l~~~~~~~g~~----------i~----~~a~~~l~~~~~g-dl~~~~~ele--kl~ 189 (343)
T 1jr3_D 128 TALANRSV-QVTCQTPEQAQLPRWVAARAKQLNLE----------LD----DAANQVLCYCYEG-NLLALAQALE--RLS 189 (343)
T ss_dssp HHHTTTCE-EEEECCCCTTHHHHHHHHHHHHTTCE----------EC----HHHHHHHHHSSTT-CHHHHHHHHH--HHH
T ss_pred HHHHhCce-EEEeeCCCHHHHHHHHHHHHHHcCCC----------CC----HHHHHHHHHHhch-HHHHHHHHHH--HHH
Confidence 88888885 89999999999999999888763222 11 2334667777653 4444444443 233
Q ss_pred HhhhcCCCccHHHHHHHHH
Q psy4165 182 AYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 182 ~~~~~~~~~~~~~~~~a~~ 200 (242)
.+. ..+.+|.+++...+.
T Consensus 190 l~~-~~~~It~e~V~~~~~ 207 (343)
T 1jr3_D 190 LLW-PDGKLTLPRVEQAVN 207 (343)
T ss_dssp HHC-TTCEECHHHHHHHHH
T ss_pred Hhc-CCCCCCHHHHHHHHh
Confidence 333 345788887766543
No 96
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.71 E-value=0.002 Score=68.81 Aligned_cols=110 Identities=9% Similarity=0.070 Sum_probs=81.1
Q ss_pred hHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH--
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY-- 79 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~-- 79 (242)
+++++|+.+|.+++.++|++-.. ...+..+|..+... +++++|||++.+-+ ..-..+++.+.
T Consensus 661 ~vk~LA~~lg~~~v~~nc~e~ld-----~~~lg~~~~g~~~~--Gaw~~~DE~nr~~~---------evLs~l~~~l~~i 724 (2695)
T 4akg_A 661 TVKAFGQNLGRVVVVFNCDDSFD-----YQVLSRLLVGITQI--GAWGCFDEFNRLDE---------KVLSAVSANIQQI 724 (2695)
T ss_dssp HHHHHHHTTTCCCEEEETTSSCC-----HHHHHHHHHHHHHH--TCEEEEETTTSSCH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcEEEEECCCCCC-----hhHhhHHHHHHHhc--CCEeeehhhhhcCh---------HHHHHHHHHHHHH
Confidence 68999999999999999987543 35678888888766 59999999999732 33333333332
Q ss_pred --Hhcc-------------CCCCeEEEEecC----CcccccHHHhcccccEEEeCCCCHHHHHHHHHH
Q psy4165 80 --RTGE-------------QSDKFMLVLASN----TPQQFDWAVNDRLDEMVEFPLPTLNERERLVRL 128 (242)
Q Consensus 80 --~l~~-------------~~~~v~vI~tTn----~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~ 128 (242)
.+.. -.....|++|.| .-..|++++..|| +.|.+..||.+...+|+-.
T Consensus 725 ~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l~ 791 (2695)
T 4akg_A 725 QNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMILQ 791 (2695)
T ss_dssp HHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHHH
T ss_pred HHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHHH
Confidence 2211 122356777888 4567999999999 6899999999998888643
No 97
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.64 E-value=0.00058 Score=59.58 Aligned_cols=115 Identities=15% Similarity=0.207 Sum_probs=66.7
Q ss_pred hHHHHHHhcCC--cEEEEecCCcccccchHHHHH---------------HHHHHHHHhCCCcEEEEEecccccccccCCC
Q psy4165 2 FAKKLAHHSGM--DYAIMTGGDVAPMGSSGVTAI---------------HKVFDWASSSRKGLVLFIDEADAFLRKRSSE 64 (242)
Q Consensus 2 lA~aiA~e~~~--~~~~v~~~~l~~~~g~~e~~l---------------~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~ 64 (242)
+|++|....+. +|+.++|+.+-... .+..+ ...|+.|. ...||||||+.+-
T Consensus 168 lAr~ih~~s~r~~~fv~vnc~~~~~~~--~~~~lfg~~~g~~tga~~~~~g~~~~a~----~gtlfldei~~l~------ 235 (368)
T 3dzd_A 168 VARLIHRYSGRKGAFVDLNCASIPQEL--AESELFGHEKGAFTGALTRKKGKLELAD----QGTLFLDEVGELD------ 235 (368)
T ss_dssp HHHHHHHHHCCCSCEEEEESSSSCTTT--HHHHHHEECSCSSSSCCCCEECHHHHTT----TSEEEEETGGGSC------
T ss_pred HHHHHHHhccccCCcEEEEcccCChHH--HHHHhcCccccccCCcccccCChHhhcC----CCeEEecChhhCC------
Confidence 67777776654 39999999874321 11111 11344332 4689999999993
Q ss_pred ccchHHHHHHHHHHHHhc-----c---CCCCeEEEEecCCcccccHHHh-ccc--------c-cEEEeCCCCH--HHHHH
Q psy4165 65 TISESLRATLNAFLYRTG-----E---QSDKFMLVLASNTPQQFDWAVN-DRL--------D-EMVEFPLPTL--NERER 124 (242)
Q Consensus 65 ~~~~~~~~~l~~lL~~l~-----~---~~~~v~vI~tTn~~~~ld~al~-~Rf--------d-~~i~~~~P~~--~~R~~ 124 (242)
...+..+..+|..=. . ..-.+-+|+|||. ++...+. |+| . ..|++|+... ++...
T Consensus 236 ---~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~--~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~ 310 (368)
T 3dzd_A 236 ---QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNK--NLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVIL 310 (368)
T ss_dssp ---HHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESS--CHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHH
T ss_pred ---HHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCC--CHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHH
Confidence 334444444443311 0 0114668898884 3443333 444 2 2577776655 77788
Q ss_pred HHHHHHhcc
Q psy4165 125 LVRLYFDKF 133 (242)
Q Consensus 125 Il~~~l~~~ 133 (242)
++++++.+.
T Consensus 311 l~~~~l~~~ 319 (368)
T 3dzd_A 311 LAEYFLKKF 319 (368)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888764
No 98
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.33 E-value=0.00035 Score=55.73 Aligned_cols=70 Identities=13% Similarity=0.215 Sum_probs=51.2
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhc-cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG-EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNER 122 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~-~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R 122 (242)
++||+|||++.+++.+.... +. ..+|..+. ....++-+|.+|+.+..||.++++|++..+++++|....+
T Consensus 88 ~~vliIDEAq~l~~~~~~~~--e~-----~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~~~~ 158 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGS--KI-----PENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMGMR 158 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTC--CC-----CHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSSCCE
T ss_pred ceEEEEEChhhhccCccccc--hh-----HHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcccCcc
Confidence 79999999999987653321 11 12455553 3344567788888899999999999999999998755444
No 99
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.14 E-value=0.002 Score=48.74 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=54.4
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
|++++++.+ |...++++..++... +.... |.+|+|||++.+... ....+-.++
T Consensus 52 L~~~i~~~~~~~g~~~~~~~~~~~~~~--------------~~~~~-~~lLilDE~~~~~~~---------~~~~l~~li 107 (149)
T 2kjq_A 52 LLQAWVAQALEAGKNAAYIDAASMPLT--------------DAAFE-AEYLAVDQVEKLGNE---------EQALLFSIF 107 (149)
T ss_dssp HHHHHHHHHHTTTCCEEEEETTTSCCC--------------GGGGG-CSEEEEESTTCCCSH---------HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEEcHHHhhHH--------------HHHhC-CCEEEEeCccccChH---------HHHHHHHHH
Confidence 678888876 777888888777543 01123 899999999886431 134455555
Q ss_pred HHhccCCCCeEEEEecC-Cccccc--HHHhcccccEEEeC
Q psy4165 79 YRTGEQSDKFMLVLASN-TPQQFD--WAVNDRLDEMVEFP 115 (242)
Q Consensus 79 ~~l~~~~~~v~vI~tTn-~~~~ld--~al~~Rfd~~i~~~ 115 (242)
..+.... +.++|.||| .|..+. +.+.+|+..-..+.
T Consensus 108 ~~~~~~g-~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 108 NRFRNSG-KGFLLLGSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp HHHHHHT-CCEEEEEESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred HHHHHcC-CcEEEEECCCCHHHccccHHHHHHHhcCeeEE
Confidence 5543222 222444555 455443 78888886555544
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.90 E-value=0.00062 Score=58.30 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=54.3
Q ss_pred hHHHHHHhcCC--cEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHHSGM--DYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e~~~--~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
||.++|.+.|. .|+.+...+..+.+ .+.+..+..+++...+. + +|+||+++.+..........+...+.+.++|
T Consensus 139 LAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~--~-LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL 215 (331)
T 2vhj_A 139 LVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH--R-VIVIDSLKNVIGAAGGNTTSGGISRGAFDLL 215 (331)
T ss_dssp HHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC--S-EEEEECCTTTC-----------CCHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC--C-EEEEecccccccccccccccchHHHHHHHHH
Confidence 67778876554 46666323333322 45666777777777654 4 9999999999765433111111123344444
Q ss_pred HHhc--cCCCCeEEEEecCCcccccHHHh
Q psy4165 79 YRTG--EQSDKFMLVLASNTPQQFDWAVN 105 (242)
Q Consensus 79 ~~l~--~~~~~v~vI~tTn~~~~ld~al~ 105 (242)
..|. ....++.+|++|| +...|+++.
T Consensus 216 ~~L~~~~k~~gvtVIlttn-p~s~deal~ 243 (331)
T 2vhj_A 216 SDIGAMAASRGCVVIASLN-PTSNDDKIV 243 (331)
T ss_dssp HHHHHHHHHHTCEEEEECC-CSSCSSSHH
T ss_pred HHHHHHHhhCCCEEEEEeC-CcccchhHH
Confidence 4442 1123467888888 566766653
No 101
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.73 E-value=0.0095 Score=50.45 Aligned_cols=118 Identities=14% Similarity=0.206 Sum_probs=70.3
Q ss_pred HHHHHHHHHhCC-CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc---------H
Q psy4165 33 IHKVFDWASSSR-KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD---------W 102 (242)
Q Consensus 33 l~~~f~~A~~~~-~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld---------~ 102 (242)
+..++....... +|.+|+|||++.+.... +. .....+..+. +.. .++.+|+|++....+. .
T Consensus 124 ~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~-~~----~~~~~l~~~~---~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~ 194 (357)
T 2fna_A 124 FANLLESFEQASKDNVIIVLDEAQELVKLR-GV----NLLPALAYAY---DNL-KRIKFIMSGSEMGLLYDYLRVEDPES 194 (357)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETGGGGGGCT-TC----CCHHHHHHHH---HHC-TTEEEEEEESSHHHHHHHTTTTCTTS
T ss_pred HHHHHHHHHhcCCCCeEEEEECHHHhhccC-ch----hHHHHHHHHH---HcC-CCeEEEEEcCchHHHHHHHhccCCCC
Confidence 455665555442 28999999999986521 11 1122333332 211 3566777766543222 2
Q ss_pred HHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 103 AVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 103 al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
.+.+|+...+++++.+.++..++++..+...+.. .+ +. ..+...|.|+ |.-+..++.
T Consensus 195 ~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~----------~~--~~----~~i~~~t~G~-P~~l~~~~~ 251 (357)
T 2fna_A 195 PLFGRAFSTVELKPFSREEAIEFLRRGFQEADID----------FK--DY----EVVYEKIGGI-PGWLTYFGF 251 (357)
T ss_dssp TTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC----------CC--CH----HHHHHHHCSC-HHHHHHHHH
T ss_pred ccccCccceeecCCCCHHHHHHHHHHHHHHcCCC----------CC--cH----HHHHHHhCCC-HHHHHHHHH
Confidence 2446777799999999999999999877542111 11 11 5788888775 445666554
No 102
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.64 E-value=0.035 Score=46.76 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=65.1
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc---------HHHhcccccEEEeCC
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD---------WAVNDRLDEMVEFPL 116 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld---------~al~~Rfd~~i~~~~ 116 (242)
|.+|+|||++.+...... ........+..++ +.. .++.+|.|++....+. ..+.+|+...+++++
T Consensus 129 ~~vlvlDe~~~~~~~~~~--~~~~~~~~L~~~~---~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~p 202 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSR--GGKELLALFAYAY---DSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKP 202 (350)
T ss_dssp CEEEEEETGGGGGGBTTT--TTHHHHHHHHHHH---HHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCC
T ss_pred CEEEEEeCHHHHhccCcc--chhhHHHHHHHHH---Hhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCC
Confidence 899999999998642110 0112223333332 222 3566666665432222 224467777999999
Q ss_pred CCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 117 PTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 117 P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
.+.++-.++++..+...+.. ++ ...+..+...|.|+ |.-+..++.
T Consensus 203 l~~~e~~~~l~~~~~~~~~~-------------~~-~~~~~~i~~~tgG~-P~~l~~~~~ 247 (350)
T 2qen_A 203 FDKDTSVEFLKRGFREVNLD-------------VP-ENEIEEAVELLDGI-PGWLVVFGV 247 (350)
T ss_dssp CCHHHHHHHHHHHHHTTTCC-------------CC-HHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCC-------------CC-HHHHHHHHHHhCCC-HHHHHHHHH
Confidence 99999999998877542111 11 23447788888875 445665553
No 103
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.20 E-value=0.039 Score=59.84 Aligned_cols=110 Identities=11% Similarity=0.097 Sum_probs=79.8
Q ss_pred hHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHh
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT 81 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l 81 (242)
+++.+|+.+|.+++.++|++-.. ...+..+|.-+-.. ++..+|||++.+- ...-.++.+.+..+
T Consensus 620 t~k~La~~lgr~~~vfnC~~~~d-----~~~~g~i~~G~~~~--GaW~cfDEfNrl~---------~~vLSvv~~qi~~I 683 (3245)
T 3vkg_A 620 TVKALGSQLGRFVLVFCCDEGFD-----LQAMSRIFVGLCQC--GAWGCFDEFNRLE---------ERILSAVSQQIQTI 683 (3245)
T ss_dssp HHHHHHHHTTCCEEEEECSSCCC-----HHHHHHHHHHHHHH--TCEEEEETTTSSC---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeEEEEeCCCCCC-----HHHHHHHHhhHhhc--CcEEEehhhhcCC---------HHHHHHHHHHHHHH
Confidence 58999999999999999987543 34577788877765 5999999999982 23333333333321
Q ss_pred ----c------cC--------CCCeEEEEecC----CcccccHHHhcccccEEEeCCCCHHHHHHHHHH
Q psy4165 82 ----G------EQ--------SDKFMLVLASN----TPQQFDWAVNDRLDEMVEFPLPTLNERERLVRL 128 (242)
Q Consensus 82 ----~------~~--------~~~v~vI~tTn----~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~ 128 (242)
. .. .....+++|.| .-..||++|..|| +.|.+..||.+...+|+-.
T Consensus 684 ~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 684 QVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp HHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHHHH
T ss_pred HHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHHHH
Confidence 0 11 12456778887 3468999999999 5799999999998888644
No 104
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.68 E-value=0.0079 Score=46.35 Aligned_cols=85 Identities=12% Similarity=-0.012 Sum_probs=45.8
Q ss_pred hHHHHHHhc----CCcEEEEecCCccccc-chH-HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHH
Q psy4165 2 FAKKLAHHS----GMDYAIMTGGDVAPMG-SSG-VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLN 75 (242)
Q Consensus 2 lA~aiA~e~----~~~~~~v~~~~l~~~~-g~~-e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~ 75 (242)
|++++++.+ |..++.++..++...+ ... ......++.... +|.+|+|||++.... .......+.
T Consensus 54 L~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~llilDE~~~~~~-------~~~~~~~l~ 123 (180)
T 3ec2_A 54 LAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVL---NSPVLVLDDLGSERL-------SDWQRELIS 123 (180)
T ss_dssp HHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHH---TCSEEEEETCSSSCC-------CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhc---CCCEEEEeCCCCCcC-------CHHHHHHHH
Confidence 678888775 6677777766554321 000 000111222222 389999999986421 233445556
Q ss_pred HHHHHhccCCCCeEEEEecCCcc
Q psy4165 76 AFLYRTGEQSDKFMLVLASNTPQ 98 (242)
Q Consensus 76 ~lL~~l~~~~~~v~vI~tTn~~~ 98 (242)
.++..... .+..+|.|||.+.
T Consensus 124 ~ll~~~~~--~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 124 YIITYRYN--NLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHH--TTCEEEEECCCCS
T ss_pred HHHHHHHH--cCCCEEEEcCCCh
Confidence 66655422 2346777887764
No 105
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.67 E-value=0.039 Score=59.81 Aligned_cols=120 Identities=15% Similarity=0.176 Sum_probs=76.7
Q ss_pred HHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHH----H-h----------CCCcEEEEEecccccccccCCCccch
Q psy4165 4 KKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWA----S-S----------SRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 4 ~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A----~-~----------~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
.++++..+.+++.++.+.-. +...+...++.- + . ..+.+|+||||++--....- +..
T Consensus 1323 ~~L~~l~~~~~~~infS~~T-----ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~y---GtQ 1394 (3245)
T 3vkg_A 1323 STLRAFPDFEVVSLNFSSAT-----TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKY---GTQ 1394 (3245)
T ss_dssp HHGGGCTTEEEEEECCCTTC-----CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCCCCTT---SCC
T ss_pred HHHHhCCCCceEEEEeeCCC-----CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCCcccc---ccc
Confidence 33444445667777766542 234455555421 1 0 12247999999985322211 123
Q ss_pred HHHHHHHHHHHHh---ccCC------CCeEEEEecCCc-----ccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 69 SLRATLNAFLYRT---GEQS------DKFMLVLASNTP-----QQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 69 ~~~~~l~~lL~~l---~~~~------~~v~vI~tTn~~-----~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
..-..+.+++.+- +... .++.+|||.|.| ..|++++++||. .+.++.|+.++...|+..++..
T Consensus 1395 ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~-vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1395 RVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAP-ILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp HHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCC-EEECCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhce-EEEeCCCCHHHHHHHHHHHHHH
Confidence 3556666666542 1111 247899999988 469999999997 6999999999999999887764
No 106
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.81 E-value=1.1 Score=38.63 Aligned_cols=106 Identities=16% Similarity=0.125 Sum_probs=65.9
Q ss_pred CcEEEEecCCcccccchHH-----HHHHHHHHHHHhC-CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCC
Q psy4165 12 MDYAIMTGGDVAPMGSSGV-----TAIHKVFDWASSS-RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQS 85 (242)
Q Consensus 12 ~~~~~v~~~~l~~~~g~~e-----~~l~~~f~~A~~~-~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~ 85 (242)
.+++.++.+.+.....+.. ..+..++..+... ..|.++++||+..++... .......+..++....+++
T Consensus 223 ~~~vv~dl~~l~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~i~iDEa~~~~~~~-----~~~~~~~l~~~~~~~Rk~g 297 (392)
T 4ag6_A 223 SDFIVFDVHDLQNAEDQVKRAQYFNVLSFAWNILERDRRERTVLVVDEAWMLVDPQ-----TPQAIAFLRDTSKRIRKYN 297 (392)
T ss_dssp SSEEEEECGGGTTSCHHHHHHHHHHHHHHHHHHHHHSCCTTCEEEETTGGGGCCTT-----CTHHHHHHHHHHHHGGGGT
T ss_pred CCEEEEEchhhhcCCHHHHHHHHHHHHHHHHHHHHhCCCccEEEEEecHHHHhCcC-----chHHHHHHHHHHHHhhhhC
Confidence 3567777666653210111 2344555555432 248999999999998531 1234455667776665444
Q ss_pred CCeEEEEecCCcccccH--------HHhcccccEEEeCCCCHHHHHHH
Q psy4165 86 DKFMLVLASNTPQQFDW--------AVNDRLDEMVEFPLPTLNERERL 125 (242)
Q Consensus 86 ~~v~vI~tTn~~~~ld~--------al~~Rfd~~i~~~~P~~~~R~~I 125 (242)
+.++.+|..+.++.. +++...+.+|.++.+. .++..+
T Consensus 298 --~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~~-~~~~~~ 342 (392)
T 4ag6_A 298 --GSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQGE-KDLEAI 342 (392)
T ss_dssp --CEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCCH-HHHHHH
T ss_pred --eEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCCh-hhHHHH
Confidence 477888988888864 5667888888888764 344333
No 107
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.25 E-value=0.19 Score=52.62 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHhCCCcEEEEEeccccccccc---CCCcc-ch-HHHHHHHHHHHHhc--cCCCCeEEEEecCCcc
Q psy4165 28 SGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKR---SSETI-SE-SLRATLNAFLYRTG--EQSDKFMLVLASNTPQ 98 (242)
Q Consensus 28 ~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r---~~~~~-~~-~~~~~l~~lL~~l~--~~~~~v~vI~tTn~~~ 98 (242)
.+|+.++.++..++..+ |++|+||+++.+.+.+ +..++ +. ...+.++++|.+|. .+..+ ++|.+||.+.
T Consensus 1489 ~~E~~l~~~~~lvr~~~-~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~-v~VI~tNq~~ 1564 (2050)
T 3cmu_A 1489 TGEQALEICDALARSGA-VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLIFINQIR 1564 (2050)
T ss_dssp SHHHHHHHHHHHHHHTC-CSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT-CEEEEEECEE
T ss_pred hHHHHHHHHHHHHhcCC-CCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC-cEEEEEcccc
Confidence 56778888888888887 9999999999999853 22111 11 13467777777774 22334 4444555543
No 108
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.11 E-value=0.045 Score=42.71 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=32.1
Q ss_pred hHHHHHHhc---CCcEEEEecCCccccc-c-hHHHHHHHHHHHHHhCCCcEEEEEecccccc
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMG-S-SGVTAIHKVFDWASSSRKGLVLFIDEADAFL 58 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~-g-~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~ 58 (242)
||+++++++ +.+++.++++++.... . -....+..++..... +.+|+|||++...
T Consensus 70 la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~lilDei~~~~ 128 (202)
T 2w58_A 70 LLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK---VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH---SSEEEEEEECCC-
T ss_pred HHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC---CCEEEEcCCCCCc
Confidence 788898877 6788888877654321 0 001112333444332 5699999997764
No 109
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=91.66 E-value=0.56 Score=43.05 Aligned_cols=75 Identities=11% Similarity=0.242 Sum_probs=55.7
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcc--cccHHHhcccccEEEeCCCCHHHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQ--QFDWAVNDRLDEMVEFPLPTLNERE 123 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~--~ld~al~~Rfd~~i~~~~P~~~~R~ 123 (242)
+.+|+|||+..++.... ......+..++. ....-+|.+|++|.+|. .|+..++.-|...|.+...+..+-.
T Consensus 344 ~ivvVIDE~~~L~~~~~-----~~~~~~L~~Iar--~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr 416 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVG-----KKVEELIARIAQ--KARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSR 416 (574)
T ss_dssp EEEEEESCCTTHHHHTC-----HHHHHHHHHHHH--HCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHH
T ss_pred cEEEEEeCHHHHhhhhh-----HHHHHHHHHHHH--HHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHH
Confidence 47999999999875321 122222333321 24566899999999998 8999999889999999999999888
Q ss_pred HHHH
Q psy4165 124 RLVR 127 (242)
Q Consensus 124 ~Il~ 127 (242)
.||.
T Consensus 417 ~ILd 420 (574)
T 2iut_A 417 TILD 420 (574)
T ss_dssp HHHS
T ss_pred HhcC
Confidence 8874
No 110
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.97 E-value=0.092 Score=45.77 Aligned_cols=98 Identities=6% Similarity=-0.104 Sum_probs=55.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEeccccccc-ccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR-KRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~-~r~~~~~~~~~~~~l~~lL~ 79 (242)
+|++++++.++..++.+..+.- .....+. .... .+++++||++.+.. .+.-..... .. ....+..
T Consensus 184 Tl~~~l~~~~~g~~~~~~~~~~-----~~~~~lg------~~~q-~~~~l~dd~~~~~~~~r~l~~~~~-~~-~~~~l~~ 249 (377)
T 1svm_A 184 TLAAALLELCGGKALNVNLPLD-----RLNFELG------VAID-QFLVVFEDVKGTGGESRDLPSGQG-IN-NLDNLRD 249 (377)
T ss_dssp HHHHHHHHHHCCEEECCSSCTT-----THHHHHG------GGTT-CSCEEETTCCCSTTTTTTCCCCSH-HH-HHHTTHH
T ss_pred HHHHHHHhhcCCcEEEEeccch-----hHHHHHH------Hhcc-hhHHHHHHHHHHHHHHhhccccCc-ch-HHHHHHH
Confidence 3788899888776665433221 0011111 1123 57889999999876 332211111 10 1122222
Q ss_pred HhccCCCCeEEEEecCCcccccHHHh--cccccEEEeCC
Q psy4165 80 RTGEQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPL 116 (242)
Q Consensus 80 ~l~~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~ 116 (242)
.++ +.+.|+++||+++.+ ++++ +|++..++..+
T Consensus 250 ~ld---G~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 250 YLD---GSVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp HHH---CSSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhc---CCCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 232 346788899999999 5666 78887776654
No 111
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.69 E-value=0.17 Score=42.63 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=29.2
Q ss_pred hHHHHHHhc----CCcEEEEecCCccccc-c-hHHHHHHHHHHHHHhCCCcEEEEEecccccc
Q psy4165 2 FAKKLAHHS----GMDYAIMTGGDVAPMG-S-SGVTAIHKVFDWASSSRKGLVLFIDEADAFL 58 (242)
Q Consensus 2 lA~aiA~e~----~~~~~~v~~~~l~~~~-g-~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~ 58 (242)
||++||+++ |.+++.++++++.... + -....+..++..... +.+|+|||++...
T Consensus 168 La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~---~~lLiiDdig~~~ 227 (308)
T 2qgz_A 168 LLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKN---VPVLILDDIGAEQ 227 (308)
T ss_dssp HHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHT---SSEEEEETCCC--
T ss_pred HHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcC---CCEEEEcCCCCCC
Confidence 678888754 4788888877664311 0 001112233333332 5699999997653
No 112
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=84.56 E-value=2.6 Score=38.15 Aligned_cols=74 Identities=14% Similarity=0.287 Sum_probs=53.7
Q ss_pred c-EEEEEecccccccccCCCccchHHHHHHHHHHHHhc--cCCCCeEEEEecCCcc--cccHHHhcccccEEEeCCCCHH
Q psy4165 46 G-LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQ--QFDWAVNDRLDEMVEFPLPTLN 120 (242)
Q Consensus 46 p-~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~--~~~~~v~vI~tTn~~~--~ld~al~~Rfd~~i~~~~P~~~ 120 (242)
| .+|+|||...++... ..-+..++..+- ...-++.+|.+|.+|. .++..++.-|...|.|...+..
T Consensus 297 P~ivlvIDE~~~ll~~~---------~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~ 367 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV---------GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKI 367 (512)
T ss_dssp CEEEEEEETHHHHHHHH---------HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHH
T ss_pred CcEEEEEeCHHHHHhhh---------hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHH
Confidence 5 489999998886421 112233443331 3344788999999987 6888888889999999999999
Q ss_pred HHHHHHHH
Q psy4165 121 ERERLVRL 128 (242)
Q Consensus 121 ~R~~Il~~ 128 (242)
+.+.|+..
T Consensus 368 dsr~ilg~ 375 (512)
T 2ius_A 368 DSRTILDQ 375 (512)
T ss_dssp HHHHHHSS
T ss_pred HHHHhcCC
Confidence 99888764
No 113
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=83.53 E-value=6.4 Score=29.93 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=34.1
Q ss_pred HhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecC--CcccccHHHhcccc-cEEEeCCC
Q psy4165 41 SSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASN--TPQQFDWAVNDRLD-EMVEFPLP 117 (242)
Q Consensus 41 ~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn--~~~~ld~al~~Rfd-~~i~~~~P 117 (242)
.... |.++++||++-...- .......+..+ +.. . +..+|++|. +...+-..+..|-+ ..+++...
T Consensus 96 l~~~-p~llilDEigp~~~l------d~~~~~~l~~~---l~~-~-~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~ 163 (178)
T 1ye8_A 96 KKDR-RKVIIIDEIGKMELF------SKKFRDLVRQI---MHD-P-NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE 163 (178)
T ss_dssp HHCT-TCEEEECCCSTTGGG------CHHHHHHHHHH---HTC-T-TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTT
T ss_pred cccC-CCEEEEeCCCCcccC------CHHHHHHHHHH---Hhc-C-CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCc
Confidence 3344 999999997644221 12233333333 333 2 333555553 33344445666643 46677666
Q ss_pred CH
Q psy4165 118 TL 119 (242)
Q Consensus 118 ~~ 119 (242)
+.
T Consensus 164 ~r 165 (178)
T 1ye8_A 164 NR 165 (178)
T ss_dssp TT
T ss_pred CH
Confidence 53
No 114
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=77.14 E-value=7.3 Score=33.88 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=53.6
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc--------HHHhcccccEEEeCC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD--------WAVNDRLDEMVEFPL 116 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld--------~al~~Rfd~~i~~~~ 116 (242)
.|+++++||+..++... .+..++.... +.++.++.+|..+.+|. .++++-+...|.++.
T Consensus 279 ~~~~~~lDE~~~l~~~~-----------~l~~~~~~~R--~~g~~~~~~~Qs~~ql~~~yG~~~a~~i~~n~~~~i~~~~ 345 (437)
T 1e9r_A 279 RRLWLFIDELASLEKLA-----------SLADALTKGR--KAGLRVVAGLQSTSQLDDVYGVKEAQTLRASFRSLVVLGG 345 (437)
T ss_dssp CCEEEEESCGGGSCBCS-----------SHHHHHHHCT--TTTEEEEEEESCHHHHHHHHCHHHHHHHHTTCCEEEEEEC
T ss_pred ccEEEEEEcccccccch-----------hHHHHHHHHh--ccCCEEEEEecCHHHHHHHHCHHHHHHHHhccCcEEEEeC
Confidence 48999999999996421 2344554443 55688899999999887 456688999999998
Q ss_pred C--CHHHHHHHHHHHHhc
Q psy4165 117 P--TLNERERLVRLYFDK 132 (242)
Q Consensus 117 P--~~~~R~~Il~~~l~~ 132 (242)
+ +.+....+- ..+..
T Consensus 346 ~~~d~~ta~~~s-~~lG~ 362 (437)
T 1e9r_A 346 SRTDPKTNEDMS-LSLGE 362 (437)
T ss_dssp CTTCHHHHHHHH-HHHCE
T ss_pred CCCCHHHHHHHH-HHcCc
Confidence 8 777766554 44443
No 115
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=70.36 E-value=7.4 Score=29.70 Aligned_cols=58 Identities=14% Similarity=0.053 Sum_probs=34.2
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEe-cC---CcccccHHHhcccccEEEeCC
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLA-SN---TPQQFDWAVNDRLDEMVEFPL 116 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~t-Tn---~~~~ld~al~~Rfd~~i~~~~ 116 (242)
+.+|+|||+..+-+ . .+ .+|..+-+.+-.|++.|. +| ++....+.|+.+.|...++..
T Consensus 77 ~dvviIDE~Q~~~~---------~---~~-~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 77 TRGVFIDEVQFFNP---------S---LF-EVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp EEEEEECCGGGSCT---------T---HH-HHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCEEEEECcccCCH---------H---HH-HHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 68999999988621 1 11 233333222333344343 34 677788888888887777653
No 116
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=67.74 E-value=8.7 Score=40.51 Aligned_cols=93 Identities=8% Similarity=0.084 Sum_probs=49.3
Q ss_pred hHHHHHHhc---CCcEEEEecCCccccc-----c--------hHHHHHHHHHHHHHh----CCCcEEEEEeccccccc-c
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMG-----S--------SGVTAIHKVFDWASS----SRKGLVLFIDEADAFLR-K 60 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~-----g--------~~e~~l~~~f~~A~~----~~~p~Il~iDeiD~l~~-~ 60 (242)
||..+|.++ +.++++++.......+ | ..+..+.++++.++. .. |++|+||.++.+.. .
T Consensus 748 LalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~-~~LVIIDsLq~i~~~~ 826 (2050)
T 3cmu_A 748 LTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA-VDVIVVDSVAALTPKA 826 (2050)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTC-CSEEEESCGGGCCCHH
T ss_pred HHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccC-CCEEEEcchhhhcccc
Confidence 455555544 3467777765543321 1 122335555555544 44 99999999999986 2
Q ss_pred c--CC-Cccc-hHHHHHHHHHHHHhc--cCCCCeEEEEecC
Q psy4165 61 R--SS-ETIS-ESLRATLNAFLYRTG--EQSDKFMLVLASN 95 (242)
Q Consensus 61 r--~~-~~~~-~~~~~~l~~lL~~l~--~~~~~v~vI~tTn 95 (242)
. +. ++.+ +...+.+++++..|. ....++.||++..
T Consensus 827 ~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 827 EIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp HHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 2 11 1111 222344667666653 2233455555543
No 117
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=66.71 E-value=27 Score=31.38 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=49.9
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeC---CCCHHH
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFP---LPTLNE 121 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~---~P~~~~ 121 (242)
+|++|+|||++.. ..+..+ ..+..||.||....-.. .+ + ...++++ +.+.++
T Consensus 236 ~~~LLVLDdv~~~------------------~~l~~l---~~~~~ilvTsR~~~~~~-~~-~--~~~~~v~~l~~L~~~e 290 (591)
T 1z6t_A 236 PRSLLILDDVWDS------------------WVLKAF---DSQCQILLTTRDKSVTD-SV-M--GPKYVVPVESSLGKEK 290 (591)
T ss_dssp TTCEEEEEEECCH------------------HHHHTT---CSSCEEEEEESCGGGGT-TC-C--SCEEEEECCSSCCHHH
T ss_pred CCeEEEEeCCCCH------------------HHHHHh---cCCCeEEEECCCcHHHH-hc-C--CCceEeecCCCCCHHH
Confidence 3899999999752 012222 34456777776543211 11 1 2344554 568899
Q ss_pred HHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHH
Q psy4165 122 RERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKL 174 (242)
Q Consensus 122 R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~l 174 (242)
-.+++..++..- ... .......|+++|+|+ |--|+.+
T Consensus 291 a~~L~~~~~~~~-------------~~~--~~~~~~~i~~~~~G~-PLal~~~ 327 (591)
T 1z6t_A 291 GLEILSLFVNMK-------------KAD--LPEQAHSIIKECKGS-PLVVSLI 327 (591)
T ss_dssp HHHHHHHHHTSC-------------GGG--SCTHHHHHHHHHTTC-HHHHHHH
T ss_pred HHHHHHHHhCCC-------------ccc--ccHHHHHHHHHhCCC-cHHHHHH
Confidence 899998876430 000 012347888888865 4444433
No 118
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=64.18 E-value=15 Score=28.69 Aligned_cols=78 Identities=12% Similarity=0.199 Sum_probs=43.8
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc-----HHHhcc
Q psy4165 33 IHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD-----WAVNDR 107 (242)
Q Consensus 33 l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld-----~al~~R 107 (242)
...+........ |.+|++||.-.+.....+ ....+..+..++..+... ++.+|.+|....... +.+..-
T Consensus 124 ~~~~~~~l~~~~-p~~lilDep~~~ld~~~d---~~~~~~~l~~l~~~l~~~--g~tii~vtH~~~~~~~~~~~~~i~~~ 197 (251)
T 2ehv_A 124 LRYIYRVVKAIN-AKRLVIDSIPSIALRLEE---ERKIREVLLKLNTILLEM--GVTTILTTEAPDPQHGKLSRYGIEEF 197 (251)
T ss_dssp HHHHHHHHHHTT-CSEEEEECHHHHHHHSSS---GGGHHHHHHHHHHHHHHH--CCEEEEEECCC----CCSSSSSCGGG
T ss_pred HHHHHHHHHhhC-CCEEEEccHHHHHhhcCC---HHHHHHHHHHHHHHHHHC--CCeEEEEECCCCCCcccccccChhhE
Confidence 344444444455 999999999888753221 233455567777766432 346677777655542 122244
Q ss_pred c-ccEEEeCC
Q psy4165 108 L-DEMVEFPL 116 (242)
Q Consensus 108 f-d~~i~~~~ 116 (242)
+ |..+.+..
T Consensus 198 ~aD~vi~l~~ 207 (251)
T 2ehv_A 198 IARGVIVLDL 207 (251)
T ss_dssp GCSEEEEEEE
T ss_pred eeeEEEEEee
Confidence 5 77777653
No 119
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=58.60 E-value=68 Score=26.41 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=12.0
Q ss_pred cE--EEEEeccccccc
Q psy4165 46 GL--VLFIDEADAFLR 59 (242)
Q Consensus 46 p~--Il~iDeiD~l~~ 59 (242)
+. +|+||-+..+..
T Consensus 180 ~~~~lVVID~l~~l~~ 195 (315)
T 3bh0_A 180 GKRVIVMIDYLQLLEP 195 (315)
T ss_dssp SCCEEEEEECGGGSBC
T ss_pred CCCeEEEEeCchhcCC
Confidence 56 999999999865
No 120
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=53.11 E-value=36 Score=26.45 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
......+..+++. .+.-+|++||+-....-.--+ +..++..+.......-||.|+|.+ ++.|+..
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~---------~~ev~~~l~~Rp~~~~vIlTGr~a---p~~l~e~ 170 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLP---------LEEVISALNARPGHQTVIITGRGC---HRDILDL 170 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSC---------HHHHHHHHHTSCTTCEEEEECSSC---CHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCC---------HHHHHHHHHhCcCCCEEEEECCCC---cHHHHHh
Confidence 4455666666653 236899999995432211110 234555555667778899999885 7788888
Q ss_pred cccEEEeCC
Q psy4165 108 LDEMVEFPL 116 (242)
Q Consensus 108 fd~~i~~~~ 116 (242)
.|.+-++..
T Consensus 171 AD~VTem~~ 179 (196)
T 1g5t_A 171 ADTVSELRP 179 (196)
T ss_dssp CSEEEECCC
T ss_pred Ccceeeecc
Confidence 888877764
No 121
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=52.06 E-value=18 Score=28.60 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=18.6
Q ss_pred eEEEEecCCc---ccccHHHhcccccEEEeCCC
Q psy4165 88 FMLVLASNTP---QQFDWAVNDRLDEMVEFPLP 117 (242)
Q Consensus 88 v~vI~tTn~~---~~ld~al~~Rfd~~i~~~~P 117 (242)
.-+|.|||.. +..-+.|.+|+- .+.|+.|
T Consensus 148 ~PlIITtN~~~~~~~~~~~L~SRi~-~f~F~~~ 179 (212)
T 1tue_A 148 PPILLTTNIHPAKDNRWPYLESRIT-VFEFPNA 179 (212)
T ss_dssp CCEEEEESSCTTSSSSCHHHHTSCE-EEECCSC
T ss_pred CCEEEecCCCcccccchhhhhhhEE-EEEcCCC
Confidence 4678888873 333355668875 7777744
No 122
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=51.30 E-value=44 Score=25.73 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCcEEEEEecccccccc
Q psy4165 35 KVFDWASSSRKGLVLFIDEADAFLRK 60 (242)
Q Consensus 35 ~~f~~A~~~~~p~Il~iDeiD~l~~~ 60 (242)
.+........ |.+|+||++-.+...
T Consensus 110 ~~~~~~~~~~-~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 110 QASAMMVESR-YALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHSC-EEEEEEETSSGGGC-
T ss_pred HHHHHHhcCC-ceEEEEeCchHHHHH
Confidence 3444444455 999999999988753
No 123
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=51.26 E-value=1.1e+02 Score=26.00 Aligned_cols=16 Identities=19% Similarity=0.191 Sum_probs=13.8
Q ss_pred CcEEEEEecccccccc
Q psy4165 45 KGLVLFIDEADAFLRK 60 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~ 60 (242)
.+.+|+||.+..+.+.
T Consensus 152 ~~~lVVIDsl~~l~~~ 167 (366)
T 1xp8_A 152 AIDVVVVDSVAALTPR 167 (366)
T ss_dssp CCSEEEEECTTTCCCS
T ss_pred CCCEEEEeChHHhccc
Confidence 3899999999999853
No 124
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=51.07 E-value=60 Score=26.08 Aligned_cols=53 Identities=13% Similarity=0.042 Sum_probs=32.6
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.||++||--+-+ ....+..+..+|..+... +..||.+|.+++.+
T Consensus 149 lAraL~~~-p~lllLDEPts~L--------D~~~~~~l~~~l~~l~~~--g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 149 IASVIVHE-PDILILDEPLVGL--------DREGKTDLLRIVEKWKTL--GKTVILISHDIETV 201 (266)
T ss_dssp HHHHHTTC-CSEEEEESTTTTC--------CHHHHHHHHHHHHHHHHT--TCEEEEECSCCTTT
T ss_pred HHHHHHcC-CCEEEEcCccccC--------CHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHH
Confidence 44455455 9999999964432 334555666677666333 34677778776544
No 125
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=50.71 E-value=1.1e+02 Score=26.64 Aligned_cols=17 Identities=18% Similarity=0.001 Sum_probs=14.2
Q ss_pred CCCcEEEEEecccccccc
Q psy4165 43 SRKGLVLFIDEADAFLRK 60 (242)
Q Consensus 43 ~~~p~Il~iDeiD~l~~~ 60 (242)
.. |.+|+||++..+...
T Consensus 312 ~~-~~livID~l~~~~~~ 328 (454)
T 2r6a_A 312 SG-LGMIVIDYLQLIQGS 328 (454)
T ss_dssp TC-CCEEEEECGGGSCCS
T ss_pred cC-CCEEEEccHHHhccC
Confidence 44 999999999998753
No 126
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=48.12 E-value=58 Score=25.64 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=38.8
Q ss_pred HHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecC------CcccccHHH
Q psy4165 34 HKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASN------TPQQFDWAV 104 (242)
Q Consensus 34 ~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn------~~~~ld~al 104 (242)
.++++.++.. .+|.+|+|||+..+- .. + ..++..+.+. ++-||++.- .|..-.+.|
T Consensus 75 ~~i~~~i~~~~~~~~~dvViIDEaQ~l~---------~~---~-ve~l~~L~~~--gi~Vil~Gl~~df~~~~F~~~~~L 139 (223)
T 2b8t_A 75 PEILNYIMSNSFNDETKVIGIDEVQFFD---------DR---I-CEVANILAEN--GFVVIISGLDKNFKGEPFGPIAKL 139 (223)
T ss_dssp HHHHHHHHSTTSCTTCCEEEECSGGGSC---------TH---H-HHHHHHHHHT--TCEEEEECCSBCTTSSBCTTHHHH
T ss_pred HHHHHHHHHHhhCCCCCEEEEecCccCc---------HH---H-HHHHHHHHhC--CCeEEEEeccccccCCcCCCcHHH
Confidence 3456666542 237899999998752 11 1 1233333222 344555443 556667777
Q ss_pred hcccccEEEeC
Q psy4165 105 NDRLDEMVEFP 115 (242)
Q Consensus 105 ~~Rfd~~i~~~ 115 (242)
+..-|...++.
T Consensus 140 l~lAD~V~el~ 150 (223)
T 2b8t_A 140 FTYADKITKLT 150 (223)
T ss_dssp HHHCSEEEECC
T ss_pred HHHhheEeecc
Confidence 77777777765
No 127
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=47.04 E-value=18 Score=27.25 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=12.0
Q ss_pred cEEEEEeccccccc
Q psy4165 46 GLVLFIDEADAFLR 59 (242)
Q Consensus 46 p~Il~iDeiD~l~~ 59 (242)
-.+|++||+|.+..
T Consensus 147 ~~~lViDEah~~~~ 160 (206)
T 1vec_A 147 VQMIVLDEADKLLS 160 (206)
T ss_dssp CCEEEEETHHHHTS
T ss_pred CCEEEEEChHHhHh
Confidence 57999999999864
No 128
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=45.30 E-value=64 Score=25.62 Aligned_cols=51 Identities=10% Similarity=-0.007 Sum_probs=31.2
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
.|-... |.||++||--+-+ ....+..+..+|..+.. . +..||.+|.+++.+
T Consensus 156 raL~~~-p~lllLDEPts~L--------D~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 156 QLLVLE-PTYAVLDETDSGL--------DIDALKVVARGVNAMRG-P-NFGALVITHYQRIL 206 (250)
T ss_dssp HHHHHC-CSEEEEECGGGTT--------CHHHHHHHHHHHHHHCS-T-TCEEEEECSSSGGG
T ss_pred HHHHcC-CCEEEEeCCCcCC--------CHHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHH
Confidence 333344 9999999965433 23455556667776633 2 34667778776544
No 129
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=45.21 E-value=86 Score=24.96 Aligned_cols=53 Identities=9% Similarity=0.094 Sum_probs=32.1
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.||++||-=+-+ ....+..+..+|..+... +..||.+|.+++.+
T Consensus 164 iAraL~~~-p~lllLDEPts~L--------D~~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 164 IGRALMTN-PKMIVMDEPIAGV--------APGLAHDIFNHVLELKAK--GITFLIIEHRLDIV 216 (257)
T ss_dssp HHHHHHTC-CSEEEEESTTTTC--------CHHHHHHHHHHHHHHHHT--TCEEEEECSCCSTT
T ss_pred HHHHHHcC-CCEEEEeCCccCC--------CHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHH
Confidence 33444455 9999999953322 334555666677666432 34677778776654
No 130
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=45.11 E-value=32 Score=29.12 Aligned_cols=43 Identities=14% Similarity=0.031 Sum_probs=24.4
Q ss_pred CCcEEEEecCCcccccchHHHHHHHHHHHHHhCC-CcEEEEEeccccccc
Q psy4165 11 GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSR-KGLVLFIDEADAFLR 59 (242)
Q Consensus 11 ~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~-~p~Il~iDeiD~l~~ 59 (242)
+.+++..+.+.+ +...|+......+... .+.+|+||-+..+..
T Consensus 127 ~~~l~I~d~~~~------si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 127 QKKLFFYDKSYV------RIEQIRLQLRKLKSQHKELGIAFIDYLQLMSG 170 (338)
T ss_dssp HSCEEEECCTTC------CHHHHHHHHHHHHHHCTTEEEEEEEEEECCCT
T ss_pred cCCeEEeCCCCC------cHHHHHHHHHHHHHhcCCCCEEEEechHHhcC
Confidence 345555444332 2334444444433322 389999999998865
No 131
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=45.05 E-value=53 Score=27.08 Aligned_cols=43 Identities=12% Similarity=0.187 Sum_probs=26.6
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcc
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQ 98 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~ 98 (242)
+|.|+++||..+-+ +......+..++..+. .+ ..+|.+|.++.
T Consensus 241 ~~~~lllDEp~~~L--------D~~~~~~l~~~l~~~~--~~-~~vi~~tH~~~ 283 (322)
T 1e69_A 241 PSPFYVLDEVDSPL--------DDYNAERFKRLLKENS--KH-TQFIVITHNKI 283 (322)
T ss_dssp CCSEEEEESCCSSC--------CHHHHHHHHHHHHHHT--TT-SEEEEECCCTT
T ss_pred CCCEEEEeCCCCCC--------CHHHHHHHHHHHHHhc--CC-CeEEEEECCHH
Confidence 37899999987755 2334455566666663 22 35566666654
No 132
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=44.83 E-value=74 Score=26.99 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=34.5
Q ss_pred c--EEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 46 G--LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 46 p--~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
| .||+|||.++=+ +......+..+|..+. . +.-||.+|..++ +....|+++.+
T Consensus 314 ~~~~~LlLDEpt~~L--------D~~~~~~l~~~L~~l~-~--~~~vi~itH~~~-----~~~~~d~i~~l 368 (415)
T 4aby_A 314 ADTPSVVFDEVDAGI--------GGAAAIAVAEQLSRLA-D--TRQVLVVTHLAQ-----IAARAHHHYKV 368 (415)
T ss_dssp CSSSEEEESSTTTTC--------CHHHHHHHHHHHHHHT-T--TSEEEEECSCHH-----HHTTCSEEEEE
T ss_pred CCCCEEEEECCCCCC--------CHHHHHHHHHHHHHHh-C--CCEEEEEeCcHH-----HHhhcCeEEEE
Confidence 7 999999998754 3445666777777774 2 335566676653 33456766666
No 133
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=43.90 E-value=41 Score=25.62 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=25.4
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDW 102 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~ 102 (242)
-.+|++||+|.+... ......+..++..+. .+.-+++.|+..+..+..
T Consensus 159 ~~~lViDEah~~~~~-------~~~~~~~~~i~~~~~--~~~~~i~~SAT~~~~~~~ 206 (220)
T 1t6n_A 159 IKHFILDECDKMLEQ-------LDMRRDVQEIFRMTP--HEKQVMMFSATLSKEIRP 206 (220)
T ss_dssp CCEEEEESHHHHHSS-------HHHHHHHHHHHHTSC--SSSEEEEEESCCCTTTHH
T ss_pred CCEEEEcCHHHHhcc-------cCcHHHHHHHHHhCC--CcCeEEEEEeecCHHHHH
Confidence 478999999998631 123334444544332 222344444444444543
No 134
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=43.52 E-value=25 Score=27.28 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=11.7
Q ss_pred cEEEEEeccccccc
Q psy4165 46 GLVLFIDEADAFLR 59 (242)
Q Consensus 46 p~Il~iDeiD~l~~ 59 (242)
-.+|++||+|.+..
T Consensus 167 ~~~lViDEah~~~~ 180 (230)
T 2oxc_A 167 IRLFILDEADKLLE 180 (230)
T ss_dssp CCEEEESSHHHHHS
T ss_pred CCEEEeCCchHhhc
Confidence 35899999999864
No 135
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=41.42 E-value=93 Score=23.26 Aligned_cols=54 Identities=11% Similarity=0.248 Sum_probs=30.9
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeC
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFP 115 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~ 115 (242)
|.++++||.++-+ .......+..+|..+... . .+|..|.+. .+....|+.+.+.
T Consensus 87 ~~~llLDEp~a~L--------D~~~~~~~~~~l~~~~~~--~-~~ivith~~-----~~~~~ad~i~~v~ 140 (173)
T 3kta_B 87 APFYLFDEIDAHL--------DDANVKRVADLIKESSKE--S-QFIVITLRD-----VMMANADKIIGVS 140 (173)
T ss_dssp CSEEEEESTTTTC--------CHHHHHHHHHHHHHHTTT--S-EEEEECSCH-----HHHTTCSEEEEEE
T ss_pred CCEEEECCCccCC--------CHHHHHHHHHHHHHhccC--C-EEEEEEecH-----HHHHhCCEEEEEE
Confidence 5799999998865 233455556666666322 2 344445543 2334556665543
No 136
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=41.40 E-value=20 Score=27.55 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=12.0
Q ss_pred cEEEEEeccccccc
Q psy4165 46 GLVLFIDEADAFLR 59 (242)
Q Consensus 46 p~Il~iDeiD~l~~ 59 (242)
-.+|+|||+|.+..
T Consensus 156 ~~~iViDEah~~~~ 169 (224)
T 1qde_A 156 IKMFILDEADEMLS 169 (224)
T ss_dssp CCEEEEETHHHHHH
T ss_pred CcEEEEcChhHHhh
Confidence 57999999999864
No 137
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=41.13 E-value=1.2e+02 Score=24.39 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=30.0
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.+|++||--+-+ ....+..+..+|..+.. .+|.+|..++.+
T Consensus 139 lAraL~~~-p~lllLDEPts~L--------D~~~~~~l~~~L~~~~~-----tviivtHd~~~~ 188 (263)
T 2pjz_A 139 TSLALASQ-PEIVGLDEPFENV--------DAARRHVISRYIKEYGK-----EGILVTHELDML 188 (263)
T ss_dssp HHHHHHTC-CSEEEEECTTTTC--------CHHHHHHHHHHHHHSCS-----EEEEEESCGGGG
T ss_pred HHHHHHhC-CCEEEEECCcccc--------CHHHHHHHHHHHHHhcC-----cEEEEEcCHHHH
Confidence 44444455 9999999954332 33445555666665532 666677766543
No 138
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=41.02 E-value=1.3e+02 Score=29.31 Aligned_cols=88 Identities=10% Similarity=0.079 Sum_probs=51.7
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCC-CCHHHHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPL-PTLNERER 124 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~-P~~~~R~~ 124 (242)
+.+|+||+++... . +.....+.-||.||....-.. .+ ..-...+++++ .+.++-.+
T Consensus 237 ~~LlvlDd~~~~~--------------~-------~~~~~~~~~ilvTtR~~~~~~-~~-~~~~~~~~~~~~l~~~~a~~ 293 (1249)
T 3sfz_A 237 RSLLILDDVWDPW--------------V-------LKAFDNQCQILLTTRDKSVTD-SV-MGPKHVVPVESGLGREKGLE 293 (1249)
T ss_dssp SCEEEEESCCCHH--------------H-------HTTTCSSCEEEEEESSTTTTT-TC-CSCBCCEECCSSCCHHHHHH
T ss_pred CEEEEEecCCCHH--------------H-------HHhhcCCCEEEEEcCCHHHHH-hh-cCCceEEEecCCCCHHHHHH
Confidence 7999999998531 1 112234457777776543221 11 12345678875 78899999
Q ss_pred HHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHH
Q psy4165 125 LVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIA 172 (242)
Q Consensus 125 Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~ 172 (242)
+|..+.... ..+ +.....+|++++.|+ |--|+
T Consensus 294 l~~~~~~~~-------------~~~--~~~~~~~i~~~~~gl-PLal~ 325 (1249)
T 3sfz_A 294 ILSLFVNMK-------------KED--LPAEAHSIIKECKGS-PLVVS 325 (1249)
T ss_dssp HHHHHHTSC-------------STT--CCTHHHHHHHHTTTC-HHHHH
T ss_pred HHHHhhCCC-------------hhh--CcHHHHHHHHHhCCC-HHHHH
Confidence 998776321 011 112247899999865 43444
No 139
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=40.60 E-value=1.7e+02 Score=25.23 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=14.2
Q ss_pred hCCCcEEEEEeccccccc
Q psy4165 42 SSRKGLVLFIDEADAFLR 59 (242)
Q Consensus 42 ~~~~p~Il~iDeiD~l~~ 59 (242)
... |.+|+||.+..+..
T Consensus 308 ~~~-~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 308 QNQ-VGLIIIDYLQLMSG 324 (444)
T ss_dssp HSC-CCEEEEECGGGCBC
T ss_pred HcC-CCEEEEcChhhcCC
Confidence 345 89999999999864
No 140
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=40.33 E-value=17 Score=28.65 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=11.7
Q ss_pred cEEEEEeccccccc
Q psy4165 46 GLVLFIDEADAFLR 59 (242)
Q Consensus 46 p~Il~iDeiD~l~~ 59 (242)
-.+|++||+|.+..
T Consensus 175 ~~~lViDEah~~~~ 188 (253)
T 1wrb_A 175 CKYIVLDEADRMLD 188 (253)
T ss_dssp CCEEEEETHHHHHH
T ss_pred CCEEEEeCHHHHHh
Confidence 46899999999864
No 141
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=39.07 E-value=26 Score=26.99 Aligned_cols=14 Identities=50% Similarity=0.513 Sum_probs=12.0
Q ss_pred cEEEEEeccccccc
Q psy4165 46 GLVLFIDEADAFLR 59 (242)
Q Consensus 46 p~Il~iDeiD~l~~ 59 (242)
-..|+|||+|.+..
T Consensus 168 ~~~lViDEah~~~~ 181 (228)
T 3iuy_A 168 ITYLVIDEADKMLD 181 (228)
T ss_dssp CCEEEECCHHHHHH
T ss_pred ceEEEEECHHHHhc
Confidence 57899999999864
No 142
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=38.95 E-value=76 Score=25.49 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=30.9
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
.|-... |.||++||--+-+ ....+..+..+|..+.. . +..||.+|..++.+
T Consensus 177 raL~~~-p~lLlLDEPts~L--------D~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~ 227 (267)
T 2zu0_C 177 QMAVLE-PELCILDESDSGL--------DIDALKVVADGVNSLRD-G-KRSFIIVTHYQRIL 227 (267)
T ss_dssp HHHHHC-CSEEEEESTTTTC--------CHHHHHHHHHHHHTTCC-S-SCEEEEECSSGGGG
T ss_pred HHHHhC-CCEEEEeCCCCCC--------CHHHHHHHHHHHHHHHh-c-CCEEEEEeeCHHHH
Confidence 333344 9999999954432 33455556667666632 2 44677778776544
No 143
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=38.64 E-value=57 Score=26.29 Aligned_cols=52 Identities=10% Similarity=0.169 Sum_probs=31.7
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQ 99 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ 99 (242)
+..|-... |.||++||--+-+ ....+..+..+|..+... +..||.+|..++.
T Consensus 170 lAraL~~~-p~lllLDEPts~L--------D~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~ 221 (263)
T 2olj_A 170 IARALAME-PKIMLFDEPTSAL--------DPEMVGEVLSVMKQLANE--GMTMVVVTHEMGF 221 (263)
T ss_dssp HHHHHTTC-CSEEEEESTTTTS--------CHHHHHHHHHHHHHHHHT--TCEEEEECSCHHH
T ss_pred HHHHHHCC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHH
Confidence 34444455 9999999954322 334555666677776433 3467777876544
No 144
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=37.31 E-value=1.9e+02 Score=24.44 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeccccccc
Q psy4165 30 VTAIHKVFDWASSSRKGLVLFIDEADAFLR 59 (242)
Q Consensus 30 e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~ 59 (242)
+..+..+-...+... |.+++||.+-.+.+
T Consensus 125 e~~l~~~~~l~~~~~-~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 125 EQALEIVDELVRSGV-VDLIVVDSVAALVP 153 (356)
T ss_dssp HHHHHHHHHHHHTSC-CSEEEEECTTTCCC
T ss_pred HHHHHHHHHHhhhcC-CCeEEehHhhhhcC
Confidence 333333333334444 89999999999886
No 145
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=37.29 E-value=80 Score=25.59 Aligned_cols=55 Identities=15% Similarity=0.104 Sum_probs=32.3
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+..|-... |.||++||-=+-+ ....+..+..+|..+.... +..||.+|.+++.+.
T Consensus 154 iAraL~~~-P~lLlLDEPts~L--------D~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~ 208 (275)
T 3gfo_A 154 IAGVLVME-PKVLILDEPTAGL--------DPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVP 208 (275)
T ss_dssp HHHHHTTC-CSEEEEECTTTTC--------CHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGG
T ss_pred HHHHHHcC-CCEEEEECccccC--------CHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHH
Confidence 33444455 9999999953322 3334555666666663122 346777787766543
No 146
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=36.52 E-value=66 Score=25.03 Aligned_cols=62 Identities=15% Similarity=0.221 Sum_probs=35.5
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
+..|-... |.+|++||--+-+ ....+..+..+|..+... +..||.+|..++.+ ..+|+.+.+
T Consensus 151 laral~~~-p~lllLDEPt~~L--------D~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~-----~~~d~v~~l 212 (224)
T 2pcj_A 151 IARALANE-PILLFADEPTGNL--------DSANTKRVMDIFLKINEG--GTSIVMVTHERELA-----ELTHRTLEM 212 (224)
T ss_dssp HHHHTTTC-CSEEEEESTTTTC--------CHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHH-----TTSSEEEEE
T ss_pred HHHHHHcC-CCEEEEeCCCCCC--------CHHHHHHHHHHHHHHHHC--CCEEEEEcCCHHHH-----HhCCEEEEE
Confidence 33444444 9999999954332 334555666677666433 34666677764421 345655554
No 147
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=35.98 E-value=57 Score=26.20 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=31.3
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQ 99 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ 99 (242)
+..|-... |.||++||-=+-+ ....+..+..+|..+... +..||.+|..++.
T Consensus 164 lAraL~~~-p~lllLDEPts~L--------D~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~ 215 (262)
T 1b0u_A 164 IARALAME-PDVLLFDEPTSAL--------DPELVGEVLRIMQQLAEE--GKTMVVVTHEMGF 215 (262)
T ss_dssp HHHHHHTC-CSEEEEESTTTTS--------CHHHHHHHHHHHHHHHHT--TCCEEEECSCHHH
T ss_pred HHHHHhcC-CCEEEEeCCCccC--------CHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHH
Confidence 34444455 9999999954322 334556666677776433 3456667776544
No 148
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=35.53 E-value=69 Score=24.19 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCcE--EEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccc----ccHHHhc
Q psy4165 33 IHKVFDWASSSRKGL--VLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQ----FDWAVND 106 (242)
Q Consensus 33 l~~~f~~A~~~~~p~--Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~----ld~al~~ 106 (242)
...+...+.... |. +|+|||+..+... + ......++. .|..+.. ..++.+|.+|..... +.+.+..
T Consensus 110 ~~~~~~~~~~~~-~~~~llilDe~~~~~~~--d---~~~~~~~~~-~l~~~~~-~~~~~vi~~~h~~~~~~~~~~~~~~~ 181 (235)
T 2w0m_A 110 VNKVIEAKQKLG-YGKARLVIDSVSALFLD--K---PAMARKISY-YLKRVLN-KWNFTIYATSQYAITTSQAFGFGVEH 181 (235)
T ss_dssp HHHHHHHHHHHC-SSCEEEEEETGGGGSSS--C---GGGHHHHHH-HHHHHHH-HTTEEEEEEEC-----------CHHH
T ss_pred HHHHHHHHHhhC-CCceEEEEECchHhhcC--C---HHHHHHHHH-HHHHHHH-hCCCeEEEEeccCcccccccccchhe
Confidence 333444444445 88 9999999988632 1 112233333 3333321 224566666655421 0022333
Q ss_pred ccccEEEeCCC
Q psy4165 107 RLDEMVEFPLP 117 (242)
Q Consensus 107 Rfd~~i~~~~P 117 (242)
-+|..+.+...
T Consensus 182 ~~d~vi~l~~~ 192 (235)
T 2w0m_A 182 VADGIIRFRRM 192 (235)
T ss_dssp HCSEEEEEEEE
T ss_pred eeeEEEEEEEE
Confidence 35666665443
No 149
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=34.87 E-value=67 Score=25.71 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=31.0
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQ 99 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ 99 (242)
+..|-... |.||++||--+-+ ....+..+..+|..+... +..||.+|..++.
T Consensus 157 lAraL~~~-p~lllLDEPts~L--------D~~~~~~l~~~l~~l~~~--g~tiiivtHd~~~ 208 (256)
T 1vpl_A 157 IARALMVN-PRLAILDEPTSGL--------DVLNAREVRKILKQASQE--GLTILVSSHNMLE 208 (256)
T ss_dssp HHHHHTTC-CSEEEEESTTTTC--------CHHHHHHHHHHHHHHHHT--TCEEEEEECCHHH
T ss_pred HHHHHHcC-CCEEEEeCCcccc--------CHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHH
Confidence 34444455 9999999954332 334555666677666422 3466667776543
No 150
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=34.65 E-value=1e+02 Score=24.41 Aligned_cols=61 Identities=11% Similarity=0.132 Sum_probs=35.8
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
+..|-... |.||++||--+-+ .......+..+|..+. . +..+|.+|.+++.+. .+|+.+.+
T Consensus 156 iAraL~~~-p~lllLDEPts~L--------D~~~~~~i~~~l~~~~--~-g~tviivtH~~~~~~-----~~d~v~~l 216 (247)
T 2ff7_A 156 IARALVNN-PKILIFDEATSAL--------DYESEHVIMRNMHKIC--K-GRTVIIIAHRLSTVK-----NADRIIVM 216 (247)
T ss_dssp HHHHHTTC-CSEEEECCCCSCC--------CHHHHHHHHHHHHHHH--T-TSEEEEECSSGGGGT-----TSSEEEEE
T ss_pred HHHHHhcC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHc--C-CCEEEEEeCCHHHHH-----hCCEEEEE
Confidence 33444444 9999999964433 3345556666776663 2 346677777765432 35655555
No 151
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=34.16 E-value=59 Score=25.63 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=29.8
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQ 98 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~ 98 (242)
+..|-... |.||++||--+-+ ....+..+..+|..+.. . +..+|.+|..++
T Consensus 150 lAraL~~~-p~lllLDEPts~L--------D~~~~~~l~~~l~~~~~-~-g~tvi~vtHd~~ 200 (240)
T 1ji0_A 150 IGRALMSR-PKLLMMDEPSLGL--------APILVSEVFEVIQKINQ-E-GTTILLVEQNAL 200 (240)
T ss_dssp HHHHHTTC-CSEEEEECTTTTC--------CHHHHHHHHHHHHHHHH-T-TCCEEEEESCHH
T ss_pred HHHHHHcC-CCEEEEcCCcccC--------CHHHHHHHHHHHHHHHH-C-CCEEEEEecCHH
Confidence 33444444 9999999954332 33455566666666643 2 335566676654
No 152
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=34.09 E-value=87 Score=20.01 Aligned_cols=36 Identities=6% Similarity=0.230 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhh
Q psy4165 171 IAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAH 206 (242)
Q Consensus 171 i~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 206 (242)
+..+..+|...+...++..++.+|+..|++..+...
T Consensus 39 i~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~k~ 74 (76)
T 3b0c_W 39 LHRLAEEARTNAFENKSKIIKPEHTIAAAKVILKKS 74 (76)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHh
Confidence 445555555555556777999999999999887654
No 153
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=33.49 E-value=1.1e+02 Score=24.58 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=36.2
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
+..|-... |.||++||--+-+ ....+..+..+|..+.... +..||.+|.+++.+ .++|+.+.+
T Consensus 167 lAraL~~~-p~lllLDEPts~L--------D~~~~~~i~~~l~~~~~~~-g~tviivtHd~~~~-----~~~d~v~~l 229 (271)
T 2ixe_A 167 LARALIRK-PRLLILDNATSAL--------DAGNQLRVQRLLYESPEWA-SRTVLLITQQLSLA-----ERAHHILFL 229 (271)
T ss_dssp HHHHHTTC-CSEEEEESTTTTC--------CHHHHHHHHHHHHHCTTTT-TSEEEEECSCHHHH-----TTCSEEEEE
T ss_pred HHHHHhcC-CCEEEEECCccCC--------CHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHH-----HhCCEEEEE
Confidence 33444444 9999999965433 3345556666766663222 34666777765432 235665555
No 154
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=33.13 E-value=1e+02 Score=24.57 Aligned_cols=59 Identities=8% Similarity=0.116 Sum_probs=35.1
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
.|-... |.||++||--+-+ ....+..+..+|..+.. + ..+|.+|.+++.+. .+|+.+.+
T Consensus 168 raL~~~-p~lllLDEPts~L--------D~~~~~~i~~~l~~l~~--~-~tviivtH~~~~~~-----~~d~i~~l 226 (260)
T 2ghi_A 168 RCLLKD-PKIVIFDEATSSL--------DSKTEYLFQKAVEDLRK--N-RTLIIIAHRLSTIS-----SAESIILL 226 (260)
T ss_dssp HHHHHC-CSEEEEECCCCTT--------CHHHHHHHHHHHHHHTT--T-SEEEEECSSGGGST-----TCSEEEEE
T ss_pred HHHHcC-CCEEEEECccccC--------CHHHHHHHHHHHHHhcC--C-CEEEEEcCCHHHHH-----hCCEEEEE
Confidence 333344 9999999964432 23445566667766632 3 46777787766442 35655555
No 155
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=32.95 E-value=19 Score=28.26 Aligned_cols=14 Identities=43% Similarity=0.560 Sum_probs=12.0
Q ss_pred cEEEEEeccccccc
Q psy4165 46 GLVLFIDEADAFLR 59 (242)
Q Consensus 46 p~Il~iDeiD~l~~ 59 (242)
-..|+|||+|.+..
T Consensus 177 ~~~lViDEah~l~~ 190 (242)
T 3fe2_A 177 TTYLVLDEADRMLD 190 (242)
T ss_dssp CCEEEETTHHHHHH
T ss_pred ccEEEEeCHHHHhh
Confidence 57999999999864
No 156
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=32.91 E-value=1.2e+02 Score=20.69 Aligned_cols=56 Identities=5% Similarity=-0.095 Sum_probs=27.9
Q ss_pred HHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 76 AFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 76 ~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
.++..+........+|+.|...+....++....+..+. .+-+.++-...++..+..
T Consensus 72 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~g~~~~l~-KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 72 LLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYIL-KPYQESRIINMLQKLTTA 127 (143)
T ss_dssp HHHHHHTTSTTCCEEEEEESCCTTHHHHHHTTCSEEEE-SSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCceEEEEeCCHHHHHHHHhCCcceEEe-CCCCHHHHHHHHHHHHHH
Confidence 34455543333333444444455555555533332332 233777777777777654
No 157
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=31.98 E-value=85 Score=23.55 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=13.0
Q ss_pred cEEEEEecccccccc
Q psy4165 46 GLVLFIDEADAFLRK 60 (242)
Q Consensus 46 p~Il~iDeiD~l~~~ 60 (242)
|.+|+|||+..+...
T Consensus 106 ~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 106 FALVVVDSITAHYRA 120 (220)
T ss_dssp EEEEEEECCCCCTTG
T ss_pred CCEEEEcCcHHHhhh
Confidence 999999999988643
No 158
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=31.86 E-value=2.5e+02 Score=24.30 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=12.6
Q ss_pred cE--EEEEecccccccc
Q psy4165 46 GL--VLFIDEADAFLRK 60 (242)
Q Consensus 46 p~--Il~iDeiD~l~~~ 60 (242)
+. +|+||-+..+...
T Consensus 309 ~~~~lIVID~Lq~~~~~ 325 (444)
T 3bgw_A 309 GKRVIVMIDYLQLLEPA 325 (444)
T ss_dssp SSCEEEEEECSTTSBCS
T ss_pred CCCeEEEEecHHhccCC
Confidence 77 9999999988653
No 159
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=31.75 E-value=1.5e+02 Score=22.59 Aligned_cols=52 Identities=6% Similarity=0.010 Sum_probs=28.3
Q ss_pred HHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEec
Q psy4165 35 KVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLAS 94 (242)
Q Consensus 35 ~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tT 94 (242)
.+-+..+... |.+|+||++..+... + .....+.+..+...+...+ +.||.++
T Consensus 119 ~i~~~~~~~~-~~~vviD~~~~l~~~----~-~~~~~~~l~~l~~~~~~~~--~~vi~~~ 170 (247)
T 2dr3_A 119 VLRQAIRDIN-AKRVVVDSVTTLYIN----K-PAMARSIILQLKRVLAGTG--CTSIFVS 170 (247)
T ss_dssp HHHHHHHHHT-CCEEEEETSGGGTTT----C-GGGHHHHHHHHHHHHHHTT--CEEEEEE
T ss_pred HHHHHHHHhC-CCEEEECCchHhhcC----C-HHHHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 3333334455 899999999998621 1 1234455555555543333 3444444
No 160
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=31.71 E-value=1.2e+02 Score=23.75 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.7
Q ss_pred cEEEeCCCCHHHHHHHHHHHH
Q psy4165 110 EMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 110 ~~i~~~~P~~~~R~~Il~~~l 130 (242)
..|.||+++.+-|.++.+..=
T Consensus 122 Iri~iP~LTeErRkelvK~ak 142 (209)
T 4gfq_A 122 IRIAFPALTEERRRDLVKVVK 142 (209)
T ss_dssp EEEECCBCCHHHHHHHHHHHH
T ss_pred eeeeCCCccHHHHHHHHHHHH
Confidence 578888889999999988863
No 161
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=31.06 E-value=80 Score=20.10 Aligned_cols=40 Identities=5% Similarity=0.021 Sum_probs=26.7
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 157 SKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 157 ~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
..||...+ | -++.++++|..-+...++..++.+|+..|+.
T Consensus 30 ~~LA~dvE-y---r~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 30 KELAEDVS-I---KLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHH-H---HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHH-H---HHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 45555533 2 3555666666666667888999999998873
No 162
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=30.77 E-value=55 Score=24.88 Aligned_cols=14 Identities=43% Similarity=0.676 Sum_probs=11.9
Q ss_pred cEEEEEeccccccc
Q psy4165 46 GLVLFIDEADAFLR 59 (242)
Q Consensus 46 p~Il~iDeiD~l~~ 59 (242)
-.+|++||+|.+..
T Consensus 151 ~~~lViDEah~~~~ 164 (219)
T 1q0u_A 151 AHILVVDEADLMLD 164 (219)
T ss_dssp CCEEEECSHHHHHH
T ss_pred ceEEEEcCchHHhh
Confidence 47899999999864
No 163
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=30.76 E-value=42 Score=26.08 Aligned_cols=51 Identities=12% Similarity=0.192 Sum_probs=26.0
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDW 102 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~ 102 (242)
-..|+|||+|.+..... ......+..++..+.....++ +++|+.-+..+..
T Consensus 176 ~~~lViDEah~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~-~~~SAT~~~~v~~ 226 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGK-----TGFRDQLASIFLACTSHKVRR-AMFSATFAYDVEQ 226 (245)
T ss_dssp CCEEEESSHHHHHHHC-------CHHHHHHHHHHHCCCTTCEE-EEEESSCCHHHHH
T ss_pred CcEEEEeChHHhccccc-----ccHHHHHHHHHHhcCCCCcEE-EEEeccCCHHHHH
Confidence 47899999999864211 112334444444443333333 4444444444444
No 164
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=30.19 E-value=1.8e+02 Score=22.17 Aligned_cols=21 Identities=29% Similarity=0.197 Sum_probs=17.7
Q ss_pred cEEEeCCCCHHHHHHHHHHHH
Q psy4165 110 EMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 110 ~~i~~~~P~~~~R~~Il~~~l 130 (242)
..|.||+++.+-|.++.+..=
T Consensus 98 Iri~iP~lTeErRkelvK~~k 118 (185)
T 1wqg_A 98 IRVAVPQLTEERRRELVKQAK 118 (185)
T ss_dssp EEEECCCCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHH
Confidence 577888889999999998863
No 165
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=30.08 E-value=67 Score=27.11 Aligned_cols=53 Identities=17% Similarity=0.355 Sum_probs=31.7
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
|.++++||.++-+ +......+..+|..+.. .. -||.+|..++ +. ...|+++.+
T Consensus 306 ~~~lllDEp~~~L--------D~~~~~~l~~~l~~~~~--~~-~vi~~th~~~-~~----~~~d~~~~l 358 (371)
T 3auy_A 306 VECIILDEPTVYL--------DENRRAKLAEIFRKVKS--IP-QMIIITHHRE-LE----DVADVIINV 358 (371)
T ss_dssp CSEEEEESTTTTC--------CHHHHHHHHHHHHHCCS--CS-EEEEEESCGG-GG----GGCSEEEEE
T ss_pred CCeEEEeCCCCcC--------CHHHHHHHHHHHHHhcc--CC-eEEEEEChHH-HH----hhCCEEEEE
Confidence 7899999998754 34455566666666632 22 3555666554 32 345666555
No 166
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=29.87 E-value=1.9e+02 Score=22.14 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=17.5
Q ss_pred cEEEeCCCCHHHHHHHHHHHH
Q psy4165 110 EMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 110 ~~i~~~~P~~~~R~~Il~~~l 130 (242)
..|.||+++.+-|.++.+..=
T Consensus 98 Iri~iP~lTeErRkelvK~~k 118 (185)
T 1is1_A 98 IRVPLPPLTEERRKDLVKIVR 118 (185)
T ss_dssp EEEECCCCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHH
Confidence 567788889999999998863
No 167
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=29.84 E-value=33 Score=25.77 Aligned_cols=14 Identities=43% Similarity=0.472 Sum_probs=11.8
Q ss_pred cEEEEEeccccccc
Q psy4165 46 GLVLFIDEADAFLR 59 (242)
Q Consensus 46 p~Il~iDeiD~l~~ 59 (242)
-.+|++||+|.+..
T Consensus 145 ~~~iViDEah~~~~ 158 (207)
T 2gxq_A 145 VEVAVLDEADEMLS 158 (207)
T ss_dssp CSEEEEESHHHHHH
T ss_pred ceEEEEEChhHhhc
Confidence 47999999999864
No 168
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=29.01 E-value=40 Score=26.19 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=11.9
Q ss_pred cEEEEEeccccccc
Q psy4165 46 GLVLFIDEADAFLR 59 (242)
Q Consensus 46 p~Il~iDeiD~l~~ 59 (242)
-.+|+|||+|.+..
T Consensus 174 ~~~lViDEah~~~~ 187 (237)
T 3bor_A 174 IKMFVLDEADEMLS 187 (237)
T ss_dssp CCEEEEESHHHHHH
T ss_pred CcEEEECCchHhhc
Confidence 57999999998864
No 169
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=28.52 E-value=1.9e+02 Score=23.36 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=29.9
Q ss_pred HHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 38 DWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 38 ~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
..|-... |.||++||-=+-+ ....+..+..+|..+...+..|.+|.+|.+++.+
T Consensus 173 AraL~~~-p~lLlLDEPts~L--------D~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~ 226 (279)
T 2ihy_A 173 ARALMGQ-PQVLILDEPAAGL--------DFIARESLLSILDSLSDSYPTLAMIYVTHFIEEI 226 (279)
T ss_dssp HHHHHTC-CSEEEEESTTTTC--------CHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGC
T ss_pred HHHHhCC-CCEEEEeCCcccc--------CHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHH
Confidence 3444455 9999999953322 3345555666766663322222115667766544
No 170
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=28.29 E-value=1.7e+02 Score=22.37 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=17.7
Q ss_pred cEEEeCCCCHHHHHHHHHHHH
Q psy4165 110 EMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 110 ~~i~~~~P~~~~R~~Il~~~l 130 (242)
..|.||+++.+-|.++.+..=
T Consensus 98 Iri~iP~lTeErRkelvK~~k 118 (185)
T 1dd5_A 98 IRLVFPSPTTEQREKWVKKAK 118 (185)
T ss_dssp EEEECCCCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHH
Confidence 577888889999999998863
No 171
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=28.07 E-value=45 Score=25.73 Aligned_cols=14 Identities=43% Similarity=0.525 Sum_probs=11.7
Q ss_pred cEEEEEeccccccc
Q psy4165 46 GLVLFIDEADAFLR 59 (242)
Q Consensus 46 p~Il~iDeiD~l~~ 59 (242)
-..|++||+|.+..
T Consensus 172 ~~~lViDEah~~~~ 185 (236)
T 2pl3_A 172 LQMLVLDEADRILD 185 (236)
T ss_dssp CCEEEETTHHHHHH
T ss_pred ccEEEEeChHHHhc
Confidence 46999999998863
No 172
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=28.07 E-value=1.3e+02 Score=23.89 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=30.9
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQ 99 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ 99 (242)
+..|-... |.||++||--+-+ ....+..+..+|..+....+ ..||.+|.+++.
T Consensus 139 lAraL~~~-p~lllLDEPts~L--------D~~~~~~l~~~l~~l~~~~g-~tvi~vtHd~~~ 191 (253)
T 2nq2_C 139 IARAIASE-CKLILLDEPTSAL--------DLANQDIVLSLLIDLAQSQN-MTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHHHTT-CSEEEESSSSTTS--------CHHHHHHHHHHHHHHHHTSC-CEEEEEESCHHH
T ss_pred HHHHHHcC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHH
Confidence 33444455 9999999954432 33455566667666633223 356667776543
No 173
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=27.96 E-value=54 Score=25.53 Aligned_cols=53 Identities=6% Similarity=0.101 Sum_probs=29.0
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.||++||--+-+. ...+..+..+|..+... + ..||.+|..++.+
T Consensus 144 laraL~~~-p~lllLDEPts~LD--------~~~~~~l~~~l~~~~~~-g-~tiiivtHd~~~~ 196 (214)
T 1sgw_A 144 LASTLLVN-AEIYVLDDPVVAID--------EDSKHKVLKSILEILKE-K-GIVIISSREELSY 196 (214)
T ss_dssp HHHHTTSC-CSEEEEESTTTTSC--------TTTHHHHHHHHHHHHHH-H-SEEEEEESSCCTT
T ss_pred HHHHHHhC-CCEEEEECCCcCCC--------HHHHHHHHHHHHHHHhC-C-CEEEEEeCCHHHH
Confidence 33444444 99999999654331 22344455555555322 2 3566667665543
No 174
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=27.59 E-value=1.8e+02 Score=22.23 Aligned_cols=21 Identities=24% Similarity=0.244 Sum_probs=17.4
Q ss_pred cEEEeCCCCHHHHHHHHHHHH
Q psy4165 110 EMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 110 ~~i~~~~P~~~~R~~Il~~~l 130 (242)
..|.||+++.+-|.++.+..=
T Consensus 98 Iri~iP~lTeErRkelvK~~k 118 (185)
T 1ise_A 98 IRVPLPPLTEERRKDLTKIVR 118 (185)
T ss_dssp EEEECCCCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHH
Confidence 567788889999999998863
No 175
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=26.92 E-value=1.1e+02 Score=24.01 Aligned_cols=55 Identities=7% Similarity=0.038 Sum_probs=28.3
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
+..|-... |.||++||--+-+ ....+..+..+|........+..+|.+|.+++.+
T Consensus 138 lAraL~~~-p~lllLDEPts~L--------D~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~ 192 (237)
T 2cbz_A 138 LARAVYSN-ADIYLFDDPLSAV--------DAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL 192 (237)
T ss_dssp HHHHHHHC-CSEEEEESTTTTS--------CHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG
T ss_pred HHHHHhcC-CCEEEEeCccccc--------CHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH
Confidence 33444344 9999999954332 2233344444442111111245677778776544
No 176
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=26.79 E-value=1e+02 Score=26.55 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCcEEEEEecccccccc
Q psy4165 34 HKVFDWASSSRKGLVLFIDEADAFLRK 60 (242)
Q Consensus 34 ~~~f~~A~~~~~p~Il~iDeiD~l~~~ 60 (242)
..+........ |.+|+||++-.++..
T Consensus 263 ~~~~~~l~~~~-~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 263 DAAAQMMSESR-FSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHSC-EEEEEEETGGGGCC-
T ss_pred HHHHHHHHhcC-CceEEecchhhhCch
Confidence 33444444455 999999999988764
No 177
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=26.70 E-value=1.4e+02 Score=19.77 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=22.5
Q ss_pred CeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 87 KFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 87 ~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
+++++...........++....+..+.-|.-+.++-...++..+..
T Consensus 81 ~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 81 PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp CEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred CEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 4444444444444455555334434443332667777777777653
No 178
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=26.66 E-value=97 Score=24.86 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=12.1
Q ss_pred HHhCCCcEEEEEeccccccc
Q psy4165 40 ASSSRKGLVLFIDEADAFLR 59 (242)
Q Consensus 40 A~~~~~p~Il~iDeiD~l~~ 59 (242)
+.... |.+|+|||.-.+..
T Consensus 143 ~~~~~-p~llilDept~~~~ 161 (296)
T 1cr0_A 143 RSGLG-CDVIILDHISIVVS 161 (296)
T ss_dssp HHTTC-CSEEEEEEEC----
T ss_pred HHhcC-CCEEEEcCccccCC
Confidence 34455 99999999998763
No 179
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.31 E-value=1e+02 Score=19.61 Aligned_cols=26 Identities=12% Similarity=0.209 Sum_probs=19.0
Q ss_pred cccCCCChhHhHHHHHHhCCCCCHHHHHHHH
Q psy4165 145 LKVAPFDYTSLCSKIAHVTEGLSGREIAKLG 175 (242)
Q Consensus 145 ~~~~~~d~~~~l~~la~~t~g~s~adi~~lv 175 (242)
..+.+-|+ +.|+.++. ++..+++.-.
T Consensus 29 k~L~EeDl----~~L~~ksk-ms~qqvkdwF 54 (70)
T 2ys9_A 29 QQLRETDI----PQLSQASR-LSTQQVLDWF 54 (70)
T ss_dssp CCCCTTHH----HHHHHHTT-CCHHHHHHHH
T ss_pred cccchhhH----HHHHHHhC-CCHHHHHHHH
Confidence 33555565 89999986 9999887644
No 180
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=25.17 E-value=1.2e+02 Score=26.05 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=32.9
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFP 115 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~ 115 (242)
+|.++++||.++-+ .......+..+|..+... +.-+|.+|.++. +...+|+.+.+.
T Consensus 355 ~~~~lllDEp~~~L--------D~~~~~~l~~~l~~~~~~--~~~~ii~th~~~-----~~~~~d~~~~~~ 410 (430)
T 1w1w_A 355 PSPFFVLDEVDAAL--------DITNVQRIAAYIRRHRNP--DLQFIVISLKNT-----MFEKSDALVGVY 410 (430)
T ss_dssp CCSEEEESSTTTTC--------CHHHHHHHHHHHHHHCBT--TBEEEEECSCHH-----HHTTCSEEEEEE
T ss_pred CCCEEEeCCCcccC--------CHHHHHHHHHHHHHHhcC--CCEEEEEECCHH-----HHHhCCEEEEEE
Confidence 38999999998765 233455556666665322 334555565432 334466666553
No 181
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=25.02 E-value=94 Score=21.26 Aligned_cols=34 Identities=6% Similarity=-0.080 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 169 REIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 169 adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
.-++.++.+|..-+...++..++.+|+..|+...
T Consensus 60 ~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 60 SFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3466777766666667788899999999999754
No 182
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=24.96 E-value=1e+02 Score=21.07 Aligned_cols=33 Identities=6% Similarity=-0.083 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 170 EIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 170 di~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
-+.+++.+|...+...++..++.+|+..|+...
T Consensus 62 ~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 62 FLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 355666666666666777899999999999865
No 183
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=24.56 E-value=88 Score=26.86 Aligned_cols=47 Identities=15% Similarity=0.330 Sum_probs=25.0
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
-..|+|||+|.+... .....+..++..+......-++++|+..+..+
T Consensus 204 ~~~lVlDEah~~~~~--------gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~ 250 (434)
T 2db3_A 204 TRFVVLDEADRMLDM--------GFSEDMRRIMTHVTMRPEHQTLMFSATFPEEI 250 (434)
T ss_dssp CCEEEEETHHHHTST--------TTHHHHHHHHHCTTSCSSCEEEEEESCCCHHH
T ss_pred CCeEEEccHhhhhcc--------CcHHHHHHHHHhcCCCCCceEEEEeccCCHHH
Confidence 479999999998642 12233444554443233333444444444433
No 184
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=24.25 E-value=1.1e+02 Score=23.97 Aligned_cols=63 Identities=10% Similarity=0.124 Sum_probs=35.6
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEe
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEF 114 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~ 114 (242)
+..|-... |.||++||-=+-+ .......+..+|..+.... +..||.+|.+++ + ....|+.+.+
T Consensus 156 iAral~~~-p~llllDEPts~L--------D~~~~~~i~~~l~~l~~~~-g~tvi~vtHd~~-~----~~~~d~i~~l 218 (235)
T 3tif_A 156 IARALANN-PPIILADQPTWAL--------DSKTGEKIMQLLKKLNEED-GKTVVVVTHDIN-V----ARFGERIIYL 218 (235)
T ss_dssp HHHHHTTC-CSEEEEESTTTTS--------CHHHHHHHHHHHHHHHHHH-CCEEEEECSCHH-H----HTTSSEEEEE
T ss_pred HHHHHHcC-CCEEEEeCCcccC--------CHHHHHHHHHHHHHHHHHc-CCEEEEEcCCHH-H----HHhCCEEEEE
Confidence 44444455 9999999954322 3334555566666663221 346777787764 2 2345555554
No 185
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=24.14 E-value=1.4e+02 Score=20.68 Aligned_cols=36 Identities=14% Similarity=0.045 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 167 SGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 167 s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
.-.-+..+..+|..-+...++..++.+|+..++++.
T Consensus 37 l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~ 72 (111)
T 3b0c_T 37 SERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQ 72 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHC
Confidence 334566777766666667788899999999998764
No 186
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=24.08 E-value=1.4e+02 Score=22.41 Aligned_cols=13 Identities=31% Similarity=0.271 Sum_probs=10.6
Q ss_pred CcEEEEEeccccc
Q psy4165 45 KGLVLFIDEADAF 57 (242)
Q Consensus 45 ~p~Il~iDeiD~l 57 (242)
.|.||+|||++.+
T Consensus 105 ~~dvlilDE~g~~ 117 (189)
T 2i3b_A 105 GQRVCVIDEIGKM 117 (189)
T ss_dssp CCCCEEECCCSTT
T ss_pred CCCEEEEeCCCcc
Confidence 4899999997555
No 187
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=23.93 E-value=53 Score=25.40 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=22.4
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+|.||++||--+- ....+..+|..+ . . +..+| +|.+++.++
T Consensus 122 ~p~lllLDEPts~------------~~~~l~~~l~~l-~-~-g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 122 NDAFVILDEAQNT------------TPAQMKMFLTRL-G-F-GSKMV-VTGDITQVD 162 (208)
T ss_dssp CSEEEEECSGGGC------------CHHHHHHHHTTB-C-T-TCEEE-EEEC-----
T ss_pred CCCEEEEeCCccc------------cHHHHHHHHHHh-c-C-CCEEE-EECCHHHHh
Confidence 4999999996432 234445555555 2 2 34666 887766544
No 188
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=23.84 E-value=3.8e+02 Score=23.66 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=39.1
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERL 125 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~I 125 (242)
+++|+||+++... .. .+. .. .+.-||.||.... +-.. .+-.+..+++++.+.++-.++
T Consensus 244 r~LlVLDdv~~~~-------------~~--~~~---~~--~gs~ilvTTR~~~-v~~~-~~~~~~~~~l~~L~~~ea~~L 301 (549)
T 2a5y_B 244 NTLFVFDDVVQEE-------------TI--RWA---QE--LRLRCLVTTRDVE-ISNA-ASQTCEFIEVTSLEIDECYDF 301 (549)
T ss_dssp TEEEEEEEECCHH-------------HH--HHH---HH--TTCEEEEEESBGG-GGGG-CCSCEEEEECCCCCHHHHHHH
T ss_pred cEEEEEECCCCch-------------hh--ccc---cc--CCCEEEEEcCCHH-HHHH-cCCCCeEEECCCCCHHHHHHH
Confidence 7999999998741 01 111 11 3346777776532 2111 122345789999999999999
Q ss_pred HHHHH
Q psy4165 126 VRLYF 130 (242)
Q Consensus 126 l~~~l 130 (242)
|..+.
T Consensus 302 f~~~a 306 (549)
T 2a5y_B 302 LEAYG 306 (549)
T ss_dssp HHHTS
T ss_pred HHHHh
Confidence 88874
No 189
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=23.81 E-value=3.6e+02 Score=23.49 Aligned_cols=161 Identities=11% Similarity=0.085 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHH--Hh
Q psy4165 28 SGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWA--VN 105 (242)
Q Consensus 28 ~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~a--l~ 105 (242)
+....++..+..++... +-+|+||..=.+ .. .......+..+.... ....-++|+-++...+.++.+ +.
T Consensus 166 dp~~i~~~al~~a~~~~-~DvVIIDTaGrl-----~~--d~~lm~el~~i~~~~-~pd~vlLVvDA~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 166 DAIKLAKEGVDYFKSKG-VDIIIVDTAGRH-----KE--DKALIEEMKQISNVI-HPHEVILVIDGTIGQQAYNQALAFK 236 (443)
T ss_dssp CHHHHHHHHHHHHHHTT-CSEEEEECCCCS-----SC--CHHHHHHHHHHHHHH-CCSEEEEEEEGGGGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CCEEEEECCCcc-----cc--hHHHHHHHHHHHHhh-cCceEEEEEeCCCchhHHHHHHHHH
Confidence 34455667788888755 689999976221 11 122222233333233 222334444454433333222 11
Q ss_pred ccccc-EEEeCCCCHHHHHHHHHHHH--hccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy4165 106 DRLDE-MVEFPLPTLNERERLVRLYF--DKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 106 ~Rfd~-~i~~~~P~~~~R~~Il~~~l--~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~ 182 (242)
..++. -+-+..-|...+........ ...++.+-..|..--.+..++. +.++.+.-| .+|+..|+..++...
T Consensus 237 ~~~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~----~~~~~~llg--~gd~~~l~e~~~~~~ 310 (443)
T 3dm5_A 237 EATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDP----PRFVSRLLG--LGDIQGLLEKFKELE 310 (443)
T ss_dssp HSCTTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCH----HHHHHHHTT--TTCHHHHHHHHHHHH
T ss_pred hhCCCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCH----HHHHHHHcC--CCcHHHHHHHHHHhh
Confidence 12222 13334444333332222222 2333333222322222333444 788888654 569999986553322
Q ss_pred ----------hhhcCCCccHHHHHHHHHHHH
Q psy4165 183 ----------YASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 183 ----------~~~~~~~~~~~~~~~a~~~~~ 203 (242)
..-..+..|.+|+.+.+++..
T Consensus 311 ~~~~~~~~~~~k~~~~~f~l~d~~~q~~~~~ 341 (443)
T 3dm5_A 311 KEVEIKEEDIERFLRGKFTLKDMYAQLEAMR 341 (443)
T ss_dssp TTHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhhCCcCHHHHHHHHHHHH
Confidence 112356789999988887764
No 190
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=23.63 E-value=1e+02 Score=21.01 Aligned_cols=33 Identities=6% Similarity=-0.073 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 170 EIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 170 di~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
-+.+++.+|...+...++..++.+|+..|+...
T Consensus 62 ~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 62 FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 455666656666666777899999999999764
No 191
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=23.44 E-value=1.7e+02 Score=24.67 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=15.3
Q ss_pred HhCCCcEEEEEecccccccc
Q psy4165 41 SSSRKGLVLFIDEADAFLRK 60 (242)
Q Consensus 41 ~~~~~p~Il~iDeiD~l~~~ 60 (242)
++.. |.+|+||-|..+.+.
T Consensus 108 ~~~~-~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 108 ERGE-KVVVFIDSLGNLASK 126 (333)
T ss_dssp CTTC-CEEEEEECSTTCBCC
T ss_pred hccC-ceEEEEecccccccc
Confidence 3344 999999999999864
No 192
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=23.34 E-value=50 Score=25.99 Aligned_cols=14 Identities=43% Similarity=0.456 Sum_probs=11.7
Q ss_pred cEEEEEeccccccc
Q psy4165 46 GLVLFIDEADAFLR 59 (242)
Q Consensus 46 p~Il~iDeiD~l~~ 59 (242)
-.+|++||+|.+..
T Consensus 187 ~~~lViDEah~l~~ 200 (249)
T 3ber_A 187 LKYLVMDEADRILN 200 (249)
T ss_dssp CCEEEECSHHHHHH
T ss_pred cCEEEEcChhhhhc
Confidence 47899999998864
No 193
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Probab=23.28 E-value=2e+02 Score=23.21 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=46.9
Q ss_pred HHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHh
Q psy4165 7 AHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT 81 (242)
Q Consensus 7 A~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l 81 (242)
-+++|+.++.+.=|+=..++||+...+.+-+..|.+..=-.|+++.|-. ..|..+.......+.+...|..+
T Consensus 82 L~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pIvCvGEtl---eere~g~t~~vv~~Ql~~~l~~~ 153 (259)
T 2i9e_A 82 IKDVGADWVILGHSERRQIFGESDELIAEKVCHALESGLKVIACIGETL---EEREAGKTEEVVFRQTKAIAAKV 153 (259)
T ss_dssp HHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCH---HHHHTTCHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCEEEECchhhhhhcCCCHHHHHHHHHHHHHCCCeEEEEcCCcH---HHHhcCCHHHHHHHHHHHHHhcc
Confidence 4578888888876665556688888899999988887645889998853 22333332333444455555444
No 194
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Probab=23.04 E-value=2.1e+02 Score=22.95 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=37.3
Q ss_pred HHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecc
Q psy4165 7 AHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEA 54 (242)
Q Consensus 7 A~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDei 54 (242)
-+++|+.++.+.=|+=..++||+...+.+-+..|.+..=-.|+++.|-
T Consensus 82 L~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEt 129 (247)
T 1ney_A 82 IKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGET 129 (247)
T ss_dssp HHHTTCCEEEESCHHHHHTTCCCHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred HHHcCCCEEEECChhhccccCCCHHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 457888888887666555668898889998988887754578899884
No 195
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=23.00 E-value=2.1e+02 Score=20.52 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=33.8
Q ss_pred HHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeC
Q psy4165 40 ASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFP 115 (242)
Q Consensus 40 A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~ 115 (242)
|-... |.++++||--.-+ .......+..++..+... +. .+|.+|...+ + ...+|+.+.+.
T Consensus 77 al~~~-p~lllLDEPt~~L--------D~~~~~~l~~~l~~~~~~-~~-tiiivsH~~~-~----~~~~d~ii~l~ 136 (148)
T 1f2t_B 77 YLAGE-ISLLILDEPTPYL--------DEERRRKLITIMERYLKK-IP-QVILVSHDEE-L----KDAADHVIRIS 136 (148)
T ss_dssp HHHSS-CSEEEEESCSCTT--------CHHHHHHHHHHHHHTGGG-SS-EEEEEESCGG-G----GGGCSEEEEEE
T ss_pred HHcCC-CCEEEEECCCccC--------CHHHHHHHHHHHHHHHcc-CC-EEEEEEChHH-H----HHhCCEEEEEE
Confidence 33344 9999999954332 233455556666665322 23 4556666542 2 34567776663
No 196
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=22.71 E-value=1.5e+02 Score=22.31 Aligned_cols=74 Identities=8% Similarity=-0.012 Sum_probs=32.4
Q ss_pred hCCCcEEEEEecccccccccCCCcc-chHHHHHHHHHHHHhc--cCCCCeEEEEecCCcccccHHHh-cccccEEEeCCC
Q psy4165 42 SSRKGLVLFIDEADAFLRKRSSETI-SESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAVN-DRLDEMVEFPLP 117 (242)
Q Consensus 42 ~~~~p~Il~iDeiD~l~~~r~~~~~-~~~~~~~l~~lL~~l~--~~~~~v~vI~tTn~~~~ld~al~-~Rfd~~i~~~~P 117 (242)
... |.+|++||.-.......+... .....+.+..++..+. ....++.||.+|..... +..+. .-.|..+.+...
T Consensus 123 ~~~-~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~-~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 123 DRP-VKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAN-GGHILAHSATLRVYLRKG 200 (231)
T ss_dssp SSC-EEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC----------CCSEEEEEEEC
T ss_pred CCc-eeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccC-cchhhHhhceEEEEEEec
Confidence 344 999999999887654322211 1111111222322221 11223466666654443 33333 445666766653
No 197
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=22.57 E-value=94 Score=25.84 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=11.3
Q ss_pred cEEEEEecccccc
Q psy4165 46 GLVLFIDEADAFL 58 (242)
Q Consensus 46 p~Il~iDeiD~l~ 58 (242)
-.+|++||+|.+.
T Consensus 164 ~~~vIiDEaH~~~ 176 (400)
T 1s2m_A 164 CSLFIMDEADKML 176 (400)
T ss_dssp CCEEEEESHHHHS
T ss_pred CCEEEEeCchHhh
Confidence 4899999999885
No 198
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=21.11 E-value=53 Score=26.07 Aligned_cols=14 Identities=50% Similarity=0.515 Sum_probs=11.9
Q ss_pred cEEEEEeccccccc
Q psy4165 46 GLVLFIDEADAFLR 59 (242)
Q Consensus 46 p~Il~iDeiD~l~~ 59 (242)
-.+|+|||+|.+..
T Consensus 202 l~~lViDEah~l~~ 215 (262)
T 3ly5_A 202 LQCLVIDEADRILD 215 (262)
T ss_dssp CCEEEECSHHHHHH
T ss_pred CCEEEEcChHHHhh
Confidence 47899999999864
No 199
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=21.00 E-value=77 Score=23.63 Aligned_cols=13 Identities=23% Similarity=0.143 Sum_probs=8.0
Q ss_pred cEEEEEecccccc
Q psy4165 46 GLVLFIDEADAFL 58 (242)
Q Consensus 46 p~Il~iDeiD~l~ 58 (242)
..+|+|||+|.+.
T Consensus 163 ~~~iIiDEah~~~ 175 (216)
T 3b6e_A 163 FSLIIIDECHHTN 175 (216)
T ss_dssp CSEEEETTC----
T ss_pred ccEEEEECchhhc
Confidence 4799999999985
No 200
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=20.69 E-value=1.4e+02 Score=24.95 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=15.7
Q ss_pred HHHhCCCcEEEEEeccccccc
Q psy4165 39 WASSSRKGLVLFIDEADAFLR 59 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~ 59 (242)
.++... |.+|+||++..+.+
T Consensus 134 l~~~~~-~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 134 LVRSGA-LDIIVIDSVAALVP 153 (349)
T ss_dssp HHTTTC-CSEEEEECGGGCCC
T ss_pred HHhcCC-CCEEEEcChHhhcc
Confidence 344444 99999999999985
No 201
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=20.65 E-value=89 Score=22.29 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=18.1
Q ss_pred cccEEEeCCCCHHHHHHHHHHHH
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l 130 (242)
|+..|.++.|+.+-|.++.+..-
T Consensus 34 ~~~~IRl~iPTEERRkeLvK~ak 56 (123)
T 3lhp_S 34 FKAAVRKVFPTEERIKDWLKIVR 56 (123)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHH
T ss_pred CCCeEEeeCCCHHHHHHHHHHHH
Confidence 55677888889888888888763
No 202
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=20.49 E-value=1.3e+02 Score=24.02 Aligned_cols=45 Identities=13% Similarity=0.094 Sum_probs=27.5
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccc
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQ 99 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ 99 (242)
|.||++||-=+-+ ....+..+..+|..+.. .++..||.+|.+.+.
T Consensus 166 p~lLllDEPts~L--------D~~~~~~i~~~l~~l~~-~~~~tvi~vtHdl~~ 210 (266)
T 4g1u_C 166 PRWLFLDEPTSAL--------DLYHQQHTLRLLRQLTR-QEPLAVCCVLHDLNL 210 (266)
T ss_dssp CEEEEECCCCSSC--------CHHHHHHHHHHHHHHHH-HSSEEEEEECSCHHH
T ss_pred CCEEEEeCccccC--------CHHHHHHHHHHHHHHHH-cCCCEEEEEEcCHHH
Confidence 9999999942221 33345556666666632 234567777877554
No 203
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=20.05 E-value=72 Score=25.49 Aligned_cols=47 Identities=6% Similarity=-0.079 Sum_probs=24.1
Q ss_pred hHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEeccc
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEAD 55 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD 55 (242)
+|+++|..+|+|++.++.+. +.+..+..+++..+... -..+.+.+|+
T Consensus 54 ~a~~~A~~LGIpl~~v~~~g------~~~~e~e~l~~~l~~~~-i~~vv~Gdi~ 100 (237)
T 3rjz_A 54 LTDLQARALGIPLVKGFTQG------EKEKEVEDLKRVLSGLK-IQGIVAGALA 100 (237)
T ss_dssp HHHHHHHHHTCCEEEEEC------------CHHHHHHHHTTSC-CSEEECC---
T ss_pred HHHHHHHHcCCCEEEEECCC------CchHHHHHHHHHHHhcC-CcEEEECCcc
Confidence 57889999999999887543 11223444444444332 2345555555
Done!