RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4165
(242 letters)
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 71.9 bits (177), Expect = 4e-16
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTA--IHKVFDWASSSRKGLVLFIDEADAFL 58
AK +A G + ++G ++ G + + ++F+ A V+FIDE DA
Sbjct: 13 TLAKAVAKELGAPFIEISGSELVSK-YVGESEKRLRELFEAAKKLAPC-VIFIDEIDALA 70
Query: 59 RKRSSETISESLRATLNAFLYRT-GEQSD--KFMLVLASNTPQQFDWAV-NDRLDEMVEF 114
R S SES R +N L G S K +++ A+N P + D A+ R D ++EF
Sbjct: 71 GSRGSGGDSESRR-VVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPALLRGRFDRIIEF 129
Query: 115 PL 116
PL
Sbjct: 130 PL 131
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 66.8 bits (163), Expect = 8e-13
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 22/181 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM--GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFL 58
+ AK +A S + + G ++ G S I ++F+ A ++FIDE D+
Sbjct: 291 LLAKAVALESRSRFISVKGSELLSKWVGESE-KNIRELFEKARKL-APSIIFIDEIDSLA 348
Query: 59 RKRSSETISESLRATLNAFLY-RTG-EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEF 114
R R + L G E+++ +++ A+N P D A+ R D ++
Sbjct: 349 SGRGPSEDGSGRRV-VGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYV 407
Query: 115 PLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKL 174
PLP L ER + +++ R K P ++A +TEG SG +IA L
Sbjct: 408 PLPDLEERLEIFKIHL-------------RDKKPPLAEDVDLEELAEITEGYSGADIAAL 454
Query: 175 G 175
Sbjct: 455 V 455
Score = 30.6 bits (69), Expect = 0.70
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 48 VLFIDEADAFLRKRSSETISESLR--ATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVN 105
++FIDE DA KRSS+ R A L A + G + + +++ A+N P D A
Sbjct: 79 IIFIDEIDALAPKRSSDQGEVERRVVAQLLALMD--GLKRGQVIVIGATNRPDGLDPAKR 136
Query: 106 --DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP----FDYTSLCSKI 159
R D +E LP R +++++ L P GK D +L +
Sbjct: 137 RPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEA 196
Query: 160 AHV 162
A
Sbjct: 197 ALR 199
>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 61.8 bits (150), Expect = 3e-11
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 18/141 (12%)
Query: 33 IHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG--EQSDKFML 90
IH++++ A + ++FIDE DA R + + + +NA L ++++ +
Sbjct: 199 IHELYERARKAAP-CIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257
Query: 91 VLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPF 150
+ A+N P+ D A+ R +E +EF LP ER ++ Y KF L + A
Sbjct: 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP--------VD-ADL 308
Query: 151 DYTSLCSKIAHVTEGLSGREI 171
Y +A T+G+SGR+I
Sbjct: 309 RY------LAAKTKGMSGRDI 323
>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family. Many
proteins may score above the trusted cutoff because an
internal.
Length = 364
Score = 46.3 bits (110), Expect = 5e-06
Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 35/213 (16%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +AH + + + G + V G + ++F+ A + ++FIDE DA
Sbjct: 171 LLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKE-KAPSIIFIDEIDAIAA 229
Query: 60 KRSSETISE---------SLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAV--NDRL 108
KR+ S L A L+ F + ++ A+N P D A+ R
Sbjct: 230 KRTDSGTSGDREVQRTLMQLLAELDGF-----DPRGNVKVIAATNRPDILDPALLRPGRF 284
Query: 109 DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP-FDYTSLCSKIAHVTEGLS 167
D ++E PLP R +++++ R++K+A D IA +TEG S
Sbjct: 285 DRIIEVPLPDFEGRLEILKIH------------TRKMKLAEDVDL----EAIAKMTEGAS 328
Query: 168 GREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200
G ++ + A E +T + VE
Sbjct: 329 GADLKAICTEAGMFAIREERDYVTMDDFIKAVE 361
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 44.9 bits (107), Expect = 2e-05
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 33/137 (24%)
Query: 48 VLFIDEADAFLRKRSSETISES---------LRATLNAFLYRTGEQSDKFMLVLASNTPQ 98
++FIDE DA KR S L L+ F + +++A+N P
Sbjct: 247 IIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF-----DPRGNVKVIMATNRPD 301
Query: 99 QFDWAV--NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP-FDYTSL 155
D A+ R D +EFPLP R +++++ R++ +A D
Sbjct: 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIH------------TRKMNLADDVDL--- 346
Query: 156 CSKIAHVTEGLSGREIA 172
+A +TEG SG ++
Sbjct: 347 -ELLARLTEGFSGADLK 362
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
Length = 644
Score = 44.3 bits (104), Expect = 3e-05
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 26/211 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSS-GVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A + + + ++G D M G + + +F+ A + ++FIDE DA R
Sbjct: 200 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAP-CIIFIDEIDAVGR 258
Query: 60 KRSSETIS--ESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
+R + + TLN L E ++ +++ A+N P D A+ R D V
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVV 318
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
LP + RE++++++ RR+ P + IA T G SG ++A
Sbjct: 319 VGLPDVRGREQILKVHM------------RRV---PLAPDIDAAIIARGTPGFSGADLAN 363
Query: 174 LGVAWQASAYASEDGVLTEAMV-MSKVEDSI 203
L +A+ +A+ +MV K +D I
Sbjct: 364 L--VNEAALFAARGNKRVVSMVEFEKAKDKI 392
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like
protein; Provisional.
Length = 398
Score = 39.4 bits (92), Expect = 0.001
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
M AK +AHH+ + + G + V G + VF A + ++ FIDE D+
Sbjct: 194 MLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSII-FIDEVDSIAT 252
Query: 60 KR-SSETIS--ESLRATLNAFLYRTG-EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
KR ++T + E R L G +Q+ +++A+N D A+ RLD +E
Sbjct: 253 KRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIE 312
Query: 114 FPLPTLNERERLVRLYF 130
FPLP + R++ RL F
Sbjct: 313 FPLP--DRRQK--RLIF 325
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 37.1 bits (86), Expect = 0.003
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 44 RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTP--QQFD 101
K VLFIDE D+ S +L L + ++ A+N P D
Sbjct: 83 AKPGVLFIDEIDSL-----SRGAQNALLRVLETLND-LRIDRENVRVIGATNRPLLGDLD 136
Query: 102 WAVNDRLDEMVEFPL 116
A+ DRLD + PL
Sbjct: 137 RALYDRLDIRIVIPL 151
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 37.0 bits (85), Expect = 0.003
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 6/108 (5%)
Query: 12 MDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLR 71
+D ++ SG + A + VL +DE + L +
Sbjct: 46 LDQLLLIIVGGKKASGSGELRLRLALALARKLKPD-VLILDEITSLLDAEQEALLLLLEE 104
Query: 72 ATLNAFLYRTGEQSDKFMLVLASNTPQQFDWA-VNDRLDEMVEFPLPT 118
L L ++L +N + A + R D + L
Sbjct: 105 LRLLLLLKSEK----NLTVILTTNDEKDLGPALLRRRFDRRIVLLLIL 148
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 37.1 bits (87), Expect = 0.006
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 33/137 (24%)
Query: 48 VLFIDEADAFLRKRSSETISES---------LRATLNAFLYRTGEQSDKFMLVLASNTPQ 98
++FIDE DA KR+ S L A ++ F + ++ A+N
Sbjct: 227 IIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF-----DPRGNVKIIAATNRID 281
Query: 99 QFDWAV--NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP-FDYTSL 155
D A+ R D ++E PLP R +++++ R++ +A D
Sbjct: 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIH------------TRKMNLADDVDL--- 326
Query: 156 CSKIAHVTEGLSGREIA 172
++A +TEG SG ++
Sbjct: 327 -EELAELTEGASGADLK 342
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
HflB(FtsH) is a pleiotropic protein required for correct
cell division in bacteria. It has ATP-dependent zinc
metalloprotease activity. It was formerly designated
cell division protein FtsH [Cellular processes, Cell
division, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 495
Score = 35.3 bits (82), Expect = 0.024
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 25/180 (13%)
Query: 3 AKKLAHHSGMDYAIMTGGDVAPMGSSGVTA--IHKVFDWASSSRKGLVLFIDEADAFLRK 60
AK +A +G+ + ++G D M GV A + +F+ A + ++ FIDE DA R+
Sbjct: 105 AKAVAGEAGVPFFSISGSDFVEM-FVGVGASRVRDLFEQAKKNAPCII-FIDEIDAVGRQ 162
Query: 61 RSSETIS--ESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVEF 114
R + + TLN L + +++ A+N P D A+ R D V
Sbjct: 163 RGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVV 222
Query: 115 PLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKL 174
LP + RE +++++ + K+AP +A T G SG ++A L
Sbjct: 223 DLPDIKGREEILKVHA------------KNKKLAP---DVDLKAVARRTPGFSGADLANL 267
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This
subfamily of the AAA family ATPases includes two members
each from three archaeal species. It also includes yeast
CDC48 (cell division control protein 48) and the human
ortholog, transitional endoplasmic reticulum ATPase
(valosin-containing protein). These proteins in
eukaryotes are involved in the budding and transfer of
membrane from the transitional endoplasmic reticulum to
the Golgi apparatus.
Length = 733
Score = 35.3 bits (81), Expect = 0.028
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 23/180 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAP--MGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFL 58
+ AK +A SG ++ + G ++ +G S AI ++F A + ++ F DE DA
Sbjct: 502 LLAKAVATESGANFIAVRGPEILSKWVGESE-KAIREIFRKARQAAPAII-FFDEIDAIA 559
Query: 59 RKRSSETISESLRATLNAFLYRT-GEQSDKFMLVL-ASNTPQQFDWAV--NDRLDEMVEF 114
R + + +N L G Q ++V+ A+N P D A+ R D ++
Sbjct: 560 PARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILV 619
Query: 115 PLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKL 174
P P +E R + F K + P ++A +TEG +G +I +
Sbjct: 620 PPP--DEEAR-----KEIF--------KIHTRSMPLAEDVDLEELAEMTEGYTGADIEAV 664
Score = 30.6 bits (69), Expect = 0.89
Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 22/179 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAP--MGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFL 58
+ AK +A+ +G + + G ++ G S + ++F A + ++ FIDE DA
Sbjct: 227 LLAKAVANEAGAYFISINGPEIMSKYYGESE-ERLREIFKEAEENAPSII-FIDEIDAIA 284
Query: 59 RKRSSETISESLRATLNAFLYRTG-EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFP 115
KR T R G + + +++ A+N P D A+ R D +
Sbjct: 285 PKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIR 344
Query: 116 LPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKL 174
+P R+ +++++ + P K+A VT G G ++A L
Sbjct: 345 VPDKRARKEILKVH---------------TRNMPLAEDVDLDKLAEVTHGFVGADLAAL 388
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional.
Length = 489
Score = 32.3 bits (74), Expect = 0.21
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 27/132 (20%)
Query: 48 VLFIDEAD-AFLRKRSSETISESLR--ATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAV 104
+L+IDE D AF S + R AT +L S+K V T D
Sbjct: 321 ILWIDEIDKAFSNSESKGDSGTTNRVLATFITWL------SEKKSPVFVVATANNIDLLP 374
Query: 105 ND-----RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKI 159
+ R DE+ LP+L ERE++ +++ KF R +D K+
Sbjct: 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF---------RPKSWKKYDI----KKL 421
Query: 160 AHVTEGLSGREI 171
+ ++ SG EI
Sbjct: 422 SKLSNKFSGAEI 433
>gnl|CDD|223679 COG0606, COG0606, Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones].
Length = 490
Score = 31.4 bits (72), Expect = 0.39
Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 34/104 (32%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNA---FLYRTGEQSD---KFMLVLASN------ 95
VLF+DE F R I E+LR L + R G + +F LV A N
Sbjct: 286 VLFLDELPEFKRS-----ILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGN 340
Query: 96 ----------TPQQFDWAVN-------DRLDEMVEFPLPTLNER 122
+P+Q +N DR+D MVE P + E
Sbjct: 341 LGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGEL 384
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 31.2 bits (71), Expect = 0.52
Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 49/174 (28%)
Query: 48 VLFIDEADAFLRKRS---------SETISESLRATLNAFL-YRTGEQSDKFMLVL-ASNT 96
++FIDE DA R+R E TLN L G + +K ++V+ A+N
Sbjct: 278 IVFIDEIDAVGRQRGAGIGGGNDEREQ-------TLNQLLTEMDGFKGNKGVIVIAATNR 330
Query: 97 PQQFDWAV--NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTS 154
D A+ R D + LP R +++++ +
Sbjct: 331 VDILDAALLRPGRFDRQITVSLPDREGRLDILKVH---------------ARNKKLSPDV 375
Query: 155 LCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLT-----EAMVMSKVEDSI 203
IA T G SG ++A L +E +LT + M +++ +I
Sbjct: 376 SLELIARRTPGFSGADLANL---------LNEAAILTARRKKATITMKEIDTAI 420
>gnl|CDD|182921 PRK11039, PRK11039, putative dehydrogenase; Provisional.
Length = 140
Score = 28.5 bits (64), Expect = 1.6
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 109 DEMVEFPLPTLNERERLVRLYFDKFVLQP-AAQGKRRLKVAPFDY 152
+ + LP++ VRLY D V + ++Q R K A +DY
Sbjct: 66 PAISYWSLPSMT-----VRLYHDAMVAEVCSSQQIFRFK-ARYDY 104
>gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated.
Length = 429
Score = 28.5 bits (64), Expect = 3.5
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 160 AHVTEGLSGREIAKLGVAWQASAYASEDGV--LTEAMVM 196
A +T+GL+G E+ + G+ A A A DG + VM
Sbjct: 130 AAITKGLAGEEMTEFGLLRAAGAVAFTDGRRSVANTQVM 168
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 28.2 bits (63), Expect = 4.7
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 22/102 (21%)
Query: 48 VLFIDEADAFLRKRSSET------ISESLRATLNAFLYRTGEQSDKF------MLVLASN 95
++FIDE DA KR T I ++ LN Q D F +++A+N
Sbjct: 279 IVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLN--------QLDGFDSRGDVKVIMATN 330
Query: 96 TPQQFDWAV--NDRLDEMVEFPLPTLNERERLVRLYFDKFVL 135
+ D A+ R+D +EFP P + R+ ++ K L
Sbjct: 331 RIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL 372
>gnl|CDD|205489 pfam13309, HTH_22, HTH domain. This domain is a helix-turn-helix
domain that is likely to act as a DNA-binding domain.
Length = 64
Score = 25.5 bits (57), Expect = 6.1
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 44 RKGLVLFIDEADAFLRKRSSETISESL---RATL 74
++ +V +DE FL K + E ++E+L RAT+
Sbjct: 26 KREIVRELDEKGIFLIKGAVEYVAEALGISRATV 59
>gnl|CDD|237501 PRK13777, PRK13777, transcriptional regulator Hpr; Provisional.
Length = 185
Score = 26.9 bits (60), Expect = 7.6
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 159 IAHVTEGLSGREIAKLGV-----AWQASAYASEDGVLTEAMVMSKVEDSIR 204
IA+ +G S EIAK GV A+ S E G LT SK ED R
Sbjct: 53 IAYHLKGASISEIAKFGVMHVSTAFNFSKKLEERGYLT----FSKKEDDKR 99
>gnl|CDD|235054 PRK02615, PRK02615, thiamine-phosphate pyrophosphorylase;
Provisional.
Length = 347
Score = 27.2 bits (61), Expect = 7.9
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 47 LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLA---SNTPQQFD-- 101
L L ++ L E + +L+ + YR D+ L A ++
Sbjct: 149 LYLITSPSENLL-----EVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRYGAL 203
Query: 102 WAVNDRLD 109
+ VNDR+D
Sbjct: 204 FIVNDRVD 211
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 27.1 bits (60), Expect = 8.8
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 65 TISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERER 124
+ ++ RA AF+ E + + L + PQ FD A DRL P + +R
Sbjct: 289 ELPDAERARAAAFVITASEGGNLHLDALRTR-PQDFDPATRDRLLAGALLPASWYAQAQR 347
Query: 125 LVRLYFDKF 133
+ D
Sbjct: 348 FRHWFRDAI 356
>gnl|CDD|226532 COG4046, COG4046, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 368
Score = 27.0 bits (60), Expect = 9.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 104 VNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAA 139
ND + ++VE +P +E E + Y + FV+ P
Sbjct: 56 ENDAMKKVVELAVPRRDEAESTLERYAEFFVIPPVD 91
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.129 0.368
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,072,760
Number of extensions: 1116448
Number of successful extensions: 1021
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1003
Number of HSP's successfully gapped: 33
Length of query: 242
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 148
Effective length of database: 6,768,326
Effective search space: 1001712248
Effective search space used: 1001712248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)