RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4165
(242 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 100 bits (250), Expect = 3e-26
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 25/182 (13%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTA--IHKVFDWASSSRKGLVLFIDEADAFL 58
+ AK +A + + + ++G D M GV A + +F+ A + ++FIDE DA
Sbjct: 60 LLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPC-IIFIDEIDAVG 117
Query: 59 RKRSSETIS--ESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEMV 112
R+R + + TLN L E ++ +++ A+N P D A+ R D V
Sbjct: 118 RQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQV 177
Query: 113 EFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIA 172
LP + RE++++++ + L P + IA T G SG ++A
Sbjct: 178 VVGLPDVRGREQILKVHMRRVPLAPDID---------------AAIIARGTPGFSGADLA 222
Query: 173 KL 174
L
Sbjct: 223 NL 224
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 92.6 bits (230), Expect = 2e-23
Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 23/181 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
A+ +A + + + +G D M G + +F+ A ++FIDE DA R
Sbjct: 57 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC-IVFIDEIDAVGR 115
Query: 60 KRSSETISES--LRATLNAFLYR--TGEQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
KR S + TLN L E+ +++ A+N P D A+ R D +
Sbjct: 116 KRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 175
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
P + RE+++R++ + P + +A T G G ++
Sbjct: 176 IDAPDVKGREQILRIH---------------ARGKPLAEDVDLALLAKRTPGFVGADLEN 220
Query: 174 L 174
L
Sbjct: 221 L 221
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 61.4 bits (148), Expect = 7e-12
Identities = 42/217 (19%), Positives = 81/217 (37%), Gaps = 27/217 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSS-GVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A+ ++ + G ++ M + ++FD A + VLF DE D+ +
Sbjct: 56 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPC-VLFFDELDSIAK 114
Query: 60 KRSSET--ISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
R + +N L ++ A+N P D A+ RLD+++
Sbjct: 115 ARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIY 174
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
PLP R +++ K P +A +T G SG ++ +
Sbjct: 175 IPLPDEKSRVAILKANLRKS---------------PVAKDVDLEFLAKMTNGFSGADLTE 219
Query: 174 LGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKV 210
+ +A A + + E+ + + E M+V
Sbjct: 220 ICQ--RACKLAIRESI--ESEIRRERERQTNPSAMEV 252
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 49.3 bits (117), Expect = 1e-07
Identities = 17/148 (11%), Positives = 40/148 (27%), Gaps = 13/148 (8%)
Query: 1 MFAKKLAHHSGMD--YAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAF 57
L G YA + G+ ++ + + + + V+ ID
Sbjct: 138 PLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAM---LQHRVIVIDSLKNV 194
Query: 58 LRKRSSETISESLRATLNAFLY-RTGEQSDKFMLVLASNTPQQFDWAVN------DRLDE 110
+ T S + L + + +V+AS P D + R +
Sbjct: 195 IGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIVELVKEASRSNS 254
Query: 111 MVEFPLPTLNERERLVRLYFDKFVLQPA 138
++ +++ +
Sbjct: 255 TSLVISTDVDGEWQVLTRTGEGLQRLTH 282
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 42.7 bits (99), Expect = 2e-05
Identities = 38/209 (18%), Positives = 81/209 (38%), Gaps = 22/209 (10%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+ A+ +A+ +G + ++ G ++ + + + + ++FIDE DA K
Sbjct: 53 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 112
Query: 61 RSSETISESLRATLNAFL--YRTGEQSDKFMLVLASNTPQQFDW--AVNDRLDEMVEFPL 116
R +T E R ++ L +Q +++ A+N P D R D V+ +
Sbjct: 113 R-EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 171
Query: 117 PTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176
P R +++++ ++A+ T G G ++A L
Sbjct: 172 PDATGRLEILQIHTKNM---------------KLADDVDLEQVANETHGHVGADLAALCS 216
Query: 177 --AWQASAYASEDGVLTEAMVMSKVEDSI 203
A QA + L + + ++V +S+
Sbjct: 217 EAALQAIRKKMDLIDLEDETIDAEVMNSL 245
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 39.3 bits (91), Expect = 3e-04
Identities = 19/185 (10%), Positives = 42/185 (22%), Gaps = 38/185 (20%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMG--SSGVTAIHKVFDWASSSRKGL-----VLFIDE 53
A L G + + VF+ + I+
Sbjct: 169 TLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINN 228
Query: 54 ADAFLRKRSSETIS--ESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND--RLD 109
D E ++ ++ N + R
Sbjct: 229 LDNLRDYLDGSVKVNLEKKHLNKRTQIFP--------PGIVTMNE---YSVPKTLQARFV 277
Query: 110 EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGR 169
+ ++F + L R +F+L+ KR ++ + + +
Sbjct: 278 KQIDFRPKD-YLKHCLERS---EFLLE-----KRIIQSG-------IALLLMLIWYRPVA 321
Query: 170 EIAKL 174
E A+
Sbjct: 322 EFAQS 326
>d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 25.7 bits (56), Expect = 3.1
Identities = 9/68 (13%), Positives = 16/68 (23%), Gaps = 2/68 (2%)
Query: 4 KKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSS 63
+ + H G D P + D K V F +
Sbjct: 50 RLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQS--RLVHDFIY 107
Query: 64 ETISESLR 71
+ + L+
Sbjct: 108 QGVLSVLQ 115
>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 172
Score = 26.1 bits (56), Expect = 3.3
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 21 DVAPMGSSGVTAIHKVFDWASSSRKGLVLFI 51
++AP+ +G+TA V A + G + I
Sbjct: 8 EMAPLADAGITAYRAVKKAARTLYPGAYVAI 38
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima
[TaxId: 2336]}
Length = 87
Score = 24.3 bits (53), Expect = 6.1
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 103 AVNDRLDEMVEFPLPTLNERERLV-RLYF 130
A+ + E +E L TL+ RE +V R+ +
Sbjct: 3 AMRMLMREELEKVLKTLSPREAMVLRMRY 31
>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis
protein C {Helicobacter pylori [TaxId: 210]}
Length = 371
Score = 25.5 bits (54), Expect = 6.2
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 2 FAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIH 34
F + L G+ +A++ +S +A+
Sbjct: 36 FEEALCEFLGVKHALVF--------NSATSALL 60
>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase
(AHBA synthase) {Amycolatopsis mediterranei [TaxId:
33910]}
Length = 384
Score = 25.5 bits (54), Expect = 7.1
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 2 FAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIH 34
F ++ A H G +A+ ++G A+
Sbjct: 39 FEREFAAHHGAAHALAV--------TNGTHALE 63
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 24.7 bits (53), Expect = 9.9
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 15/111 (13%)
Query: 26 GSSGVTAIHKVFDWASSSR---KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG 82
+ V + D + + V IDE S +L TL
Sbjct: 93 SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----SRHSFNALLKTLE------- 140
Query: 83 EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKF 133
E + +LA+ PQ+ + R + L R +L + ++
Sbjct: 141 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 191
>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4
12-hydroxydehydrogenase/prostaglandin 15-keto reductase
{Guinea pig (Cavia porcellus) [TaxId: 10141]}
Length = 147
Score = 24.6 bits (53), Expect = 9.9
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 110 EMVEFPLPTLNERERLVRLYF 130
E+ LP L E L+ F
Sbjct: 23 ELKTVELPPLKNGEVLLEALF 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.129 0.368
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 832,485
Number of extensions: 35606
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 17
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)