BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4168
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 167/330 (50%), Gaps = 43/330 (13%)
Query: 79 HVLGPLYWTRLIVSPEIPSDTTPLWKELEEVP---INNLEEFTELFSRQVTAQRP----V 131
+ L W++L PE + T +W E+++ I +LE+ FS QR V
Sbjct: 13 NALKSFNWSKL---PENKLEGT-VWTEIDDTKVFKILDLEDLERTFS---AYQRQQDFFV 65
Query: 132 TRKRQQKSS-----------KVQNVARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDA 180
+QK + KV+ ++ +ID +R+QN IL L + EI+ AI MD
Sbjct: 66 NSNSKQKEADAIDDTLSSKLKVKELS-VIDGRRAQNCNILLSRLKLSNDEIKRAILTMDE 124
Query: 181 SV-VSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHFSERIACF 239
+ + L+Q+ +I+L+ H + ++ K ++FL +++ I H+ +R+
Sbjct: 125 QEDLPKDMLEQLLKFVPEKSDIDLLEEH--KHELDRMAKADRFLFEMSRINHYQQRLQSL 182
Query: 240 MFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGF 299
F+ F++ +A + K+ I+S E + +S LK+++ ++L+ GN+MN G RG A GF
Sbjct: 183 YFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ--RGNAYGF 240
Query: 300 GLEILPKLKDVRSK-DNSVTLLHFIVRTYLRN---SENPLNESLPVPEPGDVDRAASVVF 355
+ L K+ D +S D ++TLLH+++ T + N S LNE L D+ +AA V
Sbjct: 241 KISSLNKIADTKSSIDKNITLLHYLI-TIVENKYPSVLNLNEELR-----DIPQAAKVNM 294
Query: 356 DDIHSQLSTLAKKLDAVTISMNKVVQESKP 385
++ ++STL L AV + Q+S+P
Sbjct: 295 TELDKEISTLRSGLKAVETELE--YQKSQP 322
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 166/327 (50%), Gaps = 37/327 (11%)
Query: 79 HVLGPLYWTRLIVSPEIPSDTTPLWKELEEVP---INNLEEFTELFSRQVTAQRP-VTRK 134
+ L W++L PE + T +W E+++ I +LE+ FS Q V
Sbjct: 15 NALKSFNWSKL---PENKLEGT-VWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSN 70
Query: 135 RQQKSS-----------KVQNVARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDASV- 182
+QK + KV+ ++ +ID +R+QN IL L + EI+ AI MD
Sbjct: 71 SKQKEADAIDDTLSSKLKVKELS-VIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQED 129
Query: 183 VSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHFSERIACFMFE 242
+ + L+Q+ +I+L+ H + ++ K ++FL +++ I H+ +R+ F+
Sbjct: 130 LPKDMLEQLLKFVPEKSDIDLLEEH--KHELDRMAKADRFLFEMSRINHYQQRLQSLYFK 187
Query: 243 ADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLE 302
F++ +A + K+ I+S E + +S LK+++ ++L+ GN+MN G RG A GF +
Sbjct: 188 KKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ--RGNAYGFKIS 245
Query: 303 ILPKLKDVRSK-DNSVTLLHFIVRTYLRN---SENPLNESLPVPEPGDVDRAASVVFDDI 358
L K+ D +S D ++TLLH+++ T + N S LNE L D+ +AA V ++
Sbjct: 246 SLNKIADTKSSIDKNITLLHYLI-TIVENKYPSVLNLNEELR-----DIPQAAKVNMTEL 299
Query: 359 HSQLSTLAKKLDAVTISMNKVVQESKP 385
++STL L AV + Q+S+P
Sbjct: 300 DKEISTLRSGLKAVETELE--YQKSQP 324
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 128/255 (50%), Gaps = 10/255 (3%)
Query: 150 DSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLA 209
DSK +QN+ I S + + EI++ I ++ +V++ +Q + E++ ++ + L
Sbjct: 103 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKML-SELK 161
Query: 210 SNSDLQLDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKS 269
D L + EQF + +P R+ +F+ FS+ + I ++ ++ + CE L KS
Sbjct: 162 EEYD-DLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKS 220
Query: 270 EHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRTYLR 329
E+ ++ + L +GN+MN G+R G A GF + L KL+D +S D +TLLHF+
Sbjct: 221 ENFSSLLELTLLVGNYMNAGSRNAG-AFGFNISFLCKLRDTKSADQKMTLLHFLAEL--- 276
Query: 330 NSENPLNESLPVP-EPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHM 388
EN E L P E V++A+ V +++ L + K++ V + + D
Sbjct: 277 -CENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNF--PAATDEK 333
Query: 389 EPFRTKMESCVKTGK 403
+ F KM S VK +
Sbjct: 334 DKFVEKMTSFVKDAQ 348
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 128/255 (50%), Gaps = 10/255 (3%)
Query: 150 DSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLA 209
DSK +QN+ I S + + EI++ I ++ +V++ +Q + E++ ++ + L
Sbjct: 84 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKML-SELK 142
Query: 210 SNSDLQLDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKS 269
D L + EQF + +P R+ +F+ FS+ + I ++ ++ + CE L KS
Sbjct: 143 EEYD-DLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKS 201
Query: 270 EHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRTYLR 329
E+ ++ + L +GN+MN G+R G A GF + L KL+D +S D +TLLHF+
Sbjct: 202 ENFSSLLELTLLVGNYMNAGSRNAG-AFGFNISFLCKLRDTKSADQKMTLLHFLAEL--- 257
Query: 330 NSENPLNESLPVP-EPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHM 388
EN E L P E V++A+ V +++ L + K++ V + + D
Sbjct: 258 -CENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFP--AATDEK 314
Query: 389 EPFRTKMESCVKTGK 403
+ F KM S VK +
Sbjct: 315 DKFVEKMTSFVKDAQ 329
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 128/255 (50%), Gaps = 10/255 (3%)
Query: 150 DSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLA 209
DSK +QN+ I S + + EI++ I ++ +V++ +Q + E++ ++ + L
Sbjct: 13 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKML-SELK 71
Query: 210 SNSDLQLDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKS 269
D L + EQF + +P R+ +F+ FS+ + I ++ ++ + CE L KS
Sbjct: 72 EEYD-DLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKS 130
Query: 270 EHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRTYLR 329
E+ ++ + L +GN+MN G+R G A GF + L KL+D +S D +TLLHF+
Sbjct: 131 ENFSSLLELTLLVGNYMNAGSRNAG-AFGFNISFLCKLRDTKSADQKMTLLHFLAEL--- 186
Query: 330 NSENPLNESLPVP-EPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHM 388
EN E L P E V++A+ V +++ L + K++ V + + D
Sbjct: 187 -CENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNF--PAATDEK 243
Query: 389 EPFRTKMESCVKTGK 403
+ F KM S VK +
Sbjct: 244 DKFVEKMTSFVKDAQ 258
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 175/372 (47%), Gaps = 58/372 (15%)
Query: 113 NLEEFTELFSRQVTAQRPV-------TRKRQQKSSKVQNVARLIDSKRSQNVGILAQSLH 165
+L+ F ELF + AQ P + Q+ +SKV L+++ R++N+ I +
Sbjct: 50 DLDRFEELF--KTKAQGPALDLICSKNKTAQKAASKVT----LLEANRAKNLAITLRKAG 103
Query: 166 IEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQ-LDKPEQFLA 224
EI AI D + ++ ++ + T+ E+ L+R + L+ L ++F+
Sbjct: 104 RSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQYERERQPLEELAAEDRFML 163
Query: 225 DLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGN 284
+ + ++R+A F +F D++ ++ +LN I + + S+ LK+++ IIL+LGN
Sbjct: 164 LFSKVERLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGN 223
Query: 285 FMNGGNRLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRTYLRNSENPLNESLPV--- 341
+MN RG GF L+ L L D +S D +TLLHFI T + E P
Sbjct: 224 YMNSSK--RGAVYGFKLQSLDLLLDTKSTDRKMTLLHFIALT--------VKEKYPELAN 273
Query: 342 --PEPGDVDRAASVVFDDIHSQLSTLAKKLDAV----TISMNKVVQ------ESKPDHME 389
E V++AA+V +++ + L + ++ + +I N V++ E K D
Sbjct: 274 FWQELHFVEKAAAVSLENVLLDVKELGRGMELIRRECSIHDNSVLRNFLSTNEGKLD--- 330
Query: 390 PFRTKMESCVKTGK--FKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDF----- 442
K++ KT + + +V++++ PK P P F ++ F +K+
Sbjct: 331 ----KLQRDAKTAEEAYNAVVRYFGESPKTTP-----PSVFFPVFVRFIRSYKEAEQENE 381
Query: 443 WKKEQDRIIKTK 454
+K+Q+ +++ K
Sbjct: 382 ARKKQEEVMREK 393
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
Length = 443
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 33/171 (19%)
Query: 241 FEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFG 300
+E ++++ +A KL + L +S++L+ V +IL++GNFMN ++ QA GF
Sbjct: 212 YEREYNELLA----KLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSK---QAQGFK 264
Query: 301 LEILPKLKDVRSKDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHS 360
L L +L ++ NS+T L+++ + + R F+D S
Sbjct: 265 LSTLQRLTFIKDTTNSMTFLNYVEK---------------------IVRLNYPSFNDFLS 303
Query: 361 QLSTLAKKLDAVTISMNKVVQESKPDHMEPFRTKMESCVKTGKFKSVLKFY 411
+L + LD V +S+ ++V + K D + +E V+ G KF+
Sbjct: 304 ELEPV---LDVVKVSIEQLVNDCK-DFSQSI-VNVERSVEIGNLSDSSKFH 349
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Flexibly Tethered Dimer Architecture
Length = 411
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 33/171 (19%)
Query: 241 FEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFG 300
+E ++++ +A KL + L +S++L+ V +IL++GNFMN ++ QA GF
Sbjct: 189 YEREYNELLA----KLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSK---QAQGFK 241
Query: 301 LEILPKLKDVRSKDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHS 360
L L +L ++ NS+T L+++ + + R F+D S
Sbjct: 242 LSTLQRLTFIKDTTNSMTFLNYVEK---------------------IVRLNYPSFNDFLS 280
Query: 361 QLSTLAKKLDAVTISMNKVVQESKPDHMEPFRTKMESCVKTGKFKSVLKFY 411
+L + LD V +S+ ++V + K D + +E V+ G KF+
Sbjct: 281 ELEPV---LDVVKVSIEQLVNDCK-DFSQSI-VNVERSVEIGNLSDSSKFH 326
>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
pdb|1UX4|B Chain B, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
Length = 410
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 33/171 (19%)
Query: 241 FEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFG 300
+E ++++ +A KL + L +S++L+ V +IL++GNFMN ++ QA GF
Sbjct: 183 YEREYNELLA----KLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSK---QAQGFK 235
Query: 301 LEILPKLKDVRSKDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHS 360
L L +L ++ NS+T L+++ + + R F+D S
Sbjct: 236 LSTLQRLTFIKDTTNSMTFLNYVEK---------------------IVRLNYPSFNDFLS 274
Query: 361 QLSTLAKKLDAVTISMNKVVQESKPDHMEPFRTKMESCVKTGKFKSVLKFY 411
+L + LD V +S+ ++V + K D + +E V+ G KF+
Sbjct: 275 ELEPV---LDVVKVSIEQLVNDCK-DFSQSI-VNVERSVEIGNLSDSSKFH 320
>pdb|2YEQ|A Chain A, Structure Of Phod
pdb|2YEQ|B Chain B, Structure Of Phod
Length = 527
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 66/172 (38%), Gaps = 26/172 (15%)
Query: 100 TPLWKELEEVPINNLEEFT---ELFSRQV--------TAQRPVTRKRQQKSSKVQN--VA 146
T L KE E+ NNL T + ++Q+ T+ P+ Q V
Sbjct: 304 TLLGKEQEQWLFNNLGSSTAHWNVLAQQIFFAKWNFGTSASPIYSMDSWDGYPAQRERVI 363
Query: 147 RLIDSKRSQNVGIL--------AQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATD 198
I SK NV +L A +LH++F + S IF + S+ + D RA
Sbjct: 364 NFIKSKNLNNVVVLTGDVHASWASNLHVDFEKTSSKIFGAEFVGTSITSGGNGADKRADT 423
Query: 199 EEINLIRAHLASNSDLQ-----LDKPEQFLADLADIPHFSERIACFMFEADF 245
++I H+ +D + P Q+ AD +P +E A A F
Sbjct: 424 DQILKENPHIQFFNDYRGYVRCTVTPHQWKADYRVMPFVTEPGAAISTRASF 475
>pdb|2FV2|A Chain A, Crystal Structure Analysis Of Human Rcd-1 Conserved Region
pdb|2FV2|B Chain B, Crystal Structure Analysis Of Human Rcd-1 Conserved Region
pdb|2FV2|C Chain C, Crystal Structure Analysis Of Human Rcd-1 Conserved Region
pdb|2FV2|D Chain D, Crystal Structure Analysis Of Human Rcd-1 Conserved Region
Length = 268
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 303 ILPKLKDVRSKDNSVTLLHFIVRTYLRNSENP-----LNESLP 340
IL K+ SK+ S LL +VR YLR S+NP L + LP
Sbjct: 195 ILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLP 237
>pdb|2RE9|A Chain A, Crystal Structure Of Tl1a At 2.1 A
pdb|2RE9|B Chain B, Crystal Structure Of Tl1a At 2.1 A
pdb|2RE9|C Chain C, Crystal Structure Of Tl1a At 2.1 A
Length = 181
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 321 HFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAK-----KLDAVTIS 375
H + + +N N N+ L +PE GD + V F + S+ S + + K D++T+
Sbjct: 51 HELGLAFTKNRMNYTNKFLLIPESGDYFIYSQVTFRGMTSECSEIRQAGRPNKPDSITVV 110
Query: 376 MNKVVQESKPD 386
+ KV +S P+
Sbjct: 111 ITKVT-DSYPE 120
>pdb|2O0O|A Chain A, Crystal Structure Of Tl1a
pdb|2O0O|B Chain B, Crystal Structure Of Tl1a
pdb|2O0O|C Chain C, Crystal Structure Of Tl1a
Length = 180
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 321 HFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAK-----KLDAVTIS 375
H + + +N N N+ L +PE GD + V F + S+ S + + K D++T+
Sbjct: 50 HELGLAFTKNRMNYTNKFLLIPESGDYFIYSQVTFRGMTSECSEIRQAGRPNKPDSITVV 109
Query: 376 MNKVVQESKPD 386
+ KV +S P+
Sbjct: 110 ITKVT-DSYPE 119
>pdb|2QE3|A Chain A, Crystal Structure Of Human Tl1a Extracellular Domain
Length = 184
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 321 HFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAK-----KLDAVTIS 375
H + + +N N N+ L +PE GD + V F + S+ S + + K D++T+
Sbjct: 54 HELGLAFTKNRMNYTNKFLLIPESGDYFIYSQVTFRGMTSECSEIRQAGRPNKPDSITVV 113
Query: 376 MNKVVQESKPD 386
+ KV +S P+
Sbjct: 114 ITKVT-DSYPE 123
>pdb|1IRX|A Chain A, Crystal Structure Of Class I Lysyl-Trna Synthetase
pdb|1IRX|B Chain B, Crystal Structure Of Class I Lysyl-Trna Synthetase
Length = 523
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 156 NVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQ 215
++G+ +L+ EF ++E F ++ E L++ Y++ + L+
Sbjct: 318 DLGLGILNLYDEFEKVERIYFGVEGGKGDDEELRRTYELSMPKKPERLV----------- 366
Query: 216 LDKPEQFLADLADIPHFSE 234
P +FLA L +PH +E
Sbjct: 367 AQAPFRFLAVLVQLPHLTE 385
>pdb|3MI8|A Chain A, The Structure Of Tl1a-Dcr3 Complex
Length = 184
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 321 HFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAK-----KLDAVTIS 375
H + + +N N N+ L +PE GD + V F + S+ S + + K D++T+
Sbjct: 54 HELGLAFTKNRMNYTNKFLLIPESGDYFIYSQVTFRGMTSECSEIRQAGRPNKPDSITVV 113
Query: 376 MNKVVQESKPD 386
+ KV +S P+
Sbjct: 114 ITKVT-DSYPE 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,208,721
Number of Sequences: 62578
Number of extensions: 418405
Number of successful extensions: 1026
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1002
Number of HSP's gapped (non-prelim): 21
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)