Query psy4168
Match_columns 454
No_of_seqs 269 out of 1407
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 18:37:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924|consensus 100.0 1.3E-74 2.8E-79 593.7 33.1 356 80-452 625-1002(1102)
2 smart00498 FH2 Formin Homology 100.0 2.8E-68 6E-73 552.5 32.6 359 77-453 6-384 (432)
3 PF02181 FH2: Formin Homology 100.0 2.3E-64 4.9E-69 515.1 23.9 344 78-440 8-370 (370)
4 KOG1925|consensus 100.0 1.7E-57 3.7E-62 449.3 30.1 355 79-452 282-656 (817)
5 KOG1923|consensus 100.0 3.4E-51 7.5E-56 423.3 23.5 355 80-453 370-740 (830)
6 KOG1922|consensus 100.0 1.5E-40 3.2E-45 371.5 34.5 363 78-453 393-793 (833)
7 KOG1924|consensus 99.1 4.8E-10 1E-14 118.0 9.4 43 83-125 611-663 (1102)
8 PRK15319 AIDA autotransporter- 95.3 0.028 6.2E-07 66.2 6.0 8 100-107 1762-1769(2039)
9 PHA03247 large tegument protei 95.2 0.056 1.2E-06 65.4 8.3 13 254-266 3109-3121(3151)
10 KOG1923|consensus 94.8 0.071 1.5E-06 57.8 7.0 20 432-451 715-734 (830)
11 PRK15319 AIDA autotransporter- 93.1 0.14 3E-06 60.7 5.8 15 297-311 1858-1872(2039)
12 KOG1925|consensus 91.2 0.24 5.3E-06 51.3 4.2 13 79-91 303-315 (817)
13 PRK09752 adhesin; Provisional 85.7 0.75 1.6E-05 52.8 3.8 8 100-107 985-992 (1250)
14 COG5178 PRP8 U5 snRNP spliceos 84.9 0.68 1.5E-05 52.5 2.9 7 102-108 132-138 (2365)
15 COG5178 PRP8 U5 snRNP spliceos 84.4 0.8 1.7E-05 52.0 3.2 15 264-278 630-644 (2365)
16 KOG4849|consensus 81.9 5.5 0.00012 39.8 7.5 10 115-124 360-369 (498)
17 PRK15313 autotransport protein 80.9 3.4 7.4E-05 46.6 6.4 6 101-106 678-683 (955)
18 PRK15313 autotransport protein 80.1 3.5 7.6E-05 46.6 6.1 17 297-313 770-786 (955)
19 KOG1922|consensus 79.9 6.2 0.00013 45.0 8.4 21 267-287 631-651 (833)
20 PF05308 Mito_fiss_reg: Mitoch 73.0 13 0.00027 36.2 7.2 14 7-20 135-148 (253)
21 KOG2675|consensus 72.9 4.9 0.00011 41.4 4.4 19 147-165 392-411 (480)
22 KOG2675|consensus 70.0 4.8 0.0001 41.5 3.7 12 215-226 456-467 (480)
23 KOG1830|consensus 63.9 22 0.00048 36.6 6.9 9 156-164 489-497 (518)
24 KOG4590|consensus 63.7 19 0.00041 37.4 6.5 15 166-180 319-333 (409)
25 PF07174 FAP: Fibronectin-atta 62.5 32 0.0007 33.4 7.4 12 154-165 159-170 (297)
26 KOG2391|consensus 58.2 33 0.00072 34.4 6.9 8 220-227 334-341 (365)
27 smart00498 FH2 Formin Homology 55.4 32 0.00069 36.1 6.8 92 348-445 319-430 (432)
28 PHA03211 serine/threonine kina 48.4 23 0.00049 37.5 4.4 15 255-269 265-279 (461)
29 PF10234 Cluap1: Clusterin-ass 44.4 62 0.0013 31.6 6.3 105 268-375 77-191 (267)
30 cd07637 BAR_ACAP3 The Bin/Amph 44.1 1.7E+02 0.0036 27.4 9.0 30 353-382 2-31 (200)
31 cd07639 BAR_ACAP1 The Bin/Amph 40.4 2.9E+02 0.0062 25.8 9.9 29 353-381 2-30 (200)
32 PF07462 MSP1_C: Merozoite sur 39.8 76 0.0016 34.0 6.5 17 354-370 488-504 (574)
33 PHA03211 serine/threonine kina 39.7 51 0.0011 34.8 5.5 7 200-206 210-216 (461)
34 PF03276 Gag_spuma: Spumavirus 38.9 1.3E+02 0.0029 32.2 8.0 54 148-201 309-363 (582)
35 PF07462 MSP1_C: Merozoite sur 36.8 90 0.002 33.4 6.5 6 322-327 459-464 (574)
36 PF03276 Gag_spuma: Spumavirus 36.5 1.7E+02 0.0036 31.5 8.3 15 194-208 388-402 (582)
37 PRK14950 DNA polymerase III su 35.4 82 0.0018 34.4 6.3 7 115-121 465-471 (585)
38 PF04625 DEC-1_N: DEC-1 protei 34.8 87 0.0019 31.2 5.6 26 245-270 284-309 (407)
39 cd07638 BAR_ACAP2 The Bin/Amph 34.4 3.5E+02 0.0076 25.3 9.4 28 354-381 3-30 (200)
40 KOG3397|consensus 31.5 53 0.0011 29.9 3.3 37 20-56 172-208 (225)
41 KOG0559|consensus 29.5 1.5E+02 0.0033 30.2 6.4 18 350-367 339-356 (457)
42 PF13907 DUF4208: Domain of un 28.5 27 0.00059 28.7 0.9 42 248-289 21-62 (100)
43 PF04625 DEC-1_N: DEC-1 protei 26.5 97 0.0021 30.9 4.4 8 296-303 315-322 (407)
44 PF09602 PhaP_Bmeg: Polyhydrox 26.4 4.5E+02 0.0098 23.8 8.2 92 347-450 72-163 (165)
45 KOG4500|consensus 26.2 3.2E+02 0.0069 28.9 8.1 64 259-328 316-386 (604)
46 PF04508 Pox_A_type_inc: Viral 25.8 1.1E+02 0.0024 18.2 2.8 19 355-373 3-21 (23)
47 cd07603 BAR_ACAPs The Bin/Amph 25.7 5.4E+02 0.012 23.9 9.2 28 354-381 3-30 (200)
48 KOG0566|consensus 24.7 1.4E+02 0.0031 34.2 5.8 9 81-89 1069-1077(1080)
49 PF03800 Nuf2: Nuf2 family; I 24.1 1.6E+02 0.0035 25.6 5.1 34 165-204 11-44 (146)
50 TIGR02131 phaP_Bmeg polyhydrox 23.3 3.9E+02 0.0085 23.4 6.9 42 401-448 120-161 (165)
51 KOG0559|consensus 23.3 2.6E+02 0.0055 28.7 6.7 12 166-177 342-353 (457)
52 PLN00034 mitogen-activated pro 22.6 2E+02 0.0044 28.5 6.3 10 259-268 177-186 (353)
53 PF10224 DUF2205: Predicted co 21.4 3E+02 0.0065 21.7 5.5 51 235-290 18-68 (80)
54 PLN02983 biotin carboxyl carri 21.3 1.9E+02 0.0041 28.3 5.3 69 31-104 142-210 (274)
55 smart00806 AIP3 Actin interact 21.1 5.4E+02 0.012 26.9 8.8 15 426-440 295-309 (426)
56 PF07304 SRA1: Steroid recepto 20.3 34 0.00074 30.7 0.0 10 183-192 86-95 (157)
57 PRK12270 kgd alpha-ketoglutara 20.3 2.7E+02 0.0059 32.5 6.9 10 166-175 237-246 (1228)
No 1
>KOG1924|consensus
Probab=100.00 E-value=1.3e-74 Score=593.67 Aligned_cols=356 Identities=24% Similarity=0.447 Sum_probs=313.7
Q ss_pred ccCCccceeccCCCCCCCCCCccccccccCCCCC---hHHHHHHHhhhhhccCcc---cchhhccccccccccccccccc
Q psy4168 80 VLGPLYWTRLIVSPEIPSDTTPLWKELEEVPINN---LEEFTELFSRQVTAQRPV---TRKRQQKSSKVQNVARLIDSKR 153 (454)
Q Consensus 80 ~lk~l~W~kI~~~~~~~~~~~tiW~~l~~~~l~~---~~e~e~lF~~~~~~~~~~---~~~~~~~~~k~~~~~~vld~kr 153 (454)
+||+++|.+|.+... ..+++|.++.+.++.+ +..+.-.|+.+...++.. ..+++..++|.++. .|||+|.
T Consensus 625 ~Mrr~nW~kI~p~d~---s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel-~ilDsKt 700 (1102)
T KOG1924|consen 625 PMRRFNWSKIVPRDL---SENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKEL-RILDSKT 700 (1102)
T ss_pred ccccCCccccCcccc---CccceeeecchhhccchHHHHHHHHHhhccccccccccccccccchhhhhhhhh-eecchHH
Confidence 799999999988765 5899999999998854 445566688764322211 11222234456666 8999999
Q ss_pred chhhhhhhccCCCChHHHHHHHhcCCcCCCCHHHHHHHHhccCCHHHHHHHHHhhccCCCCCCCchHHHHHHHhcCCChH
Q psy4168 154 SQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHFS 233 (454)
Q Consensus 154 a~ni~I~L~~lk~~~~~i~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~L~~~e~f~~~l~~ip~~~ 233 (454)
|||++|+|+.+++++++|+.+|+.+|+.+|+...|++|++.+|..|-+..|++.+...+ .|.+.|||...|++|.+++
T Consensus 701 aQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye--~l~e~EQF~vvm~~vkrL~ 778 (1102)
T KOG1924|consen 701 AQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYE--DLPEPEQFVVVMSQVKRLR 778 (1102)
T ss_pred HHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc--CCCCHHHHhHHHhhccccC
Confidence 99999999999999999999999999999999999999999999999999999876654 6999999999999999999
Q ss_pred hhHHHhhhHhhhHHHHHHHHHhHHHHHHHHHHHHcChhHHHHHHHHHHhhhhccCCCCCCCCcceeccCcccccccccCC
Q psy4168 234 ERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSK 313 (454)
Q Consensus 234 ~Rl~~~~f~~~f~~~~~~i~~~l~~l~~a~~~l~~S~~l~~lL~~iL~iGN~lN~g~~~rg~a~GF~L~sL~kL~~~Ks~ 313 (454)
.||.+++|+.+|.+.+++|++.|..+..||++||+|++|.++|++||.+|||||+|++ ..+|+||.+++|+||.|||++
T Consensus 779 pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSr-Na~afgF~is~L~kL~dTKsa 857 (1102)
T KOG1924|consen 779 PRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSR-NAQAFGFNISFLCKLRDTKSA 857 (1102)
T ss_pred hhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccc-cchhhccchHHHHhhcccccc
Confidence 9999999999999999999999999999999999999999999999999999999985 588999999999999999999
Q ss_pred CCCccHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchHH
Q psy4168 314 DNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHMEPFRT 393 (454)
Q Consensus 314 d~k~tLLh~lv~~~~~~~~~~~~~~l~~~el~~v~~A~~v~~~~l~~~~~~L~~~l~~~~~~~~~~~~~s~~~~~~~f~~ 393 (454)
|+++||||||++.+++++|+.+++. +||.+|.+|+||+.+.++..++.++.++..++..+....... ..-+.|.+
T Consensus 858 Dqk~TLLHfLae~~e~kypd~l~F~---ddl~hv~kaSrvnad~ikK~~~~m~~~ik~Le~dlk~~~~~~--~e~dkF~e 932 (1102)
T KOG1924|consen 858 DQKTTLLHFLAEICEEKYPDILKFP---DDLEHVEKASRVNADEIKKNLQQMENQIKKLERDLKNFKIAG--NEHDKFVE 932 (1102)
T ss_pred chhhHHHHHHHHHHHHhChhhhcch---hhHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cchhhHHH
Confidence 9999999999999999999998874 699999999999999999999999999999988776443221 23468999
Q ss_pred hHHHHHh----------------hhhhHHHHHhhcccCCCCCCCCCChhhhhHhHHHHHHHHHHHHHHHHHHHHh
Q psy4168 394 KMESCVK----------------TGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKKEQDRIIK 452 (454)
Q Consensus 394 ~~~~fl~----------------~~~f~~~~~~fge~~~~~~~~~~~~~eFF~~~~~F~~~f~~a~k~~~~~~~k 452 (454)
+|..|.+ ++.|+++.+||.+|+++ ++.+|||+.|.+|.+.|..|+++|+++.+.
T Consensus 933 kM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kk-----ysmEEFFaDi~tFrnaf~ea~~en~krRee 1002 (1102)
T KOG1924|consen 933 KMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKK-----YSMEEFFADIRTFRNAFLEAVAENEKRREE 1002 (1102)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCccc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999976 56789999999999975 899999999999999999999998876554
No 2
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=100.00 E-value=2.8e-68 Score=552.47 Aligned_cols=359 Identities=28% Similarity=0.522 Sum_probs=314.1
Q ss_pred CCCccCCccceeccCCCCCCCCCCccccccccCCCCChHHHHHHHhhhhhccCccc---chhh-cccccccccccccccc
Q psy4168 77 TPHVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPINNLEEFTELFSRQVTAQRPVT---RKRQ-QKSSKVQNVARLIDSK 152 (454)
Q Consensus 77 ~p~~lk~l~W~kI~~~~~~~~~~~tiW~~l~~~~l~~~~e~e~lF~~~~~~~~~~~---~~~~-~~~~k~~~~~~vld~k 152 (454)
|+++||+|||++|.... ..+|||+++++.+-.|+++||++|+.+.....+.. ..+. ..+++.+.+ +|||+|
T Consensus 6 P~~klK~l~W~ki~~~~----~~~tvW~~i~~~~~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v-~ild~k 80 (432)
T smart00498 6 PKKKLKPLHWDKLNPLD----PRGTVWDKIDENSEGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEF-KILDPK 80 (432)
T ss_pred CCCCCcCcCceeCCCcc----ccCChhhhcCcccccCHHHHHHHhCcCccccCccccccccccccccccccce-Eeechh
Confidence 34689999999998765 47899999998764578999999997654322211 0111 112234556 999999
Q ss_pred cchhhhhhhccCCCChHHHHHHHhcCCcCCCCHHHHHHHHhccCCHHHHHHHHHhhccCCCCCCCchHHHHHHHhcCCCh
Q psy4168 153 RSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHF 232 (454)
Q Consensus 153 ra~ni~I~L~~lk~~~~~i~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~L~~~e~f~~~l~~ip~~ 232 (454)
|||||+|+|+++++++++|++||++||...|+.|.|+.|++++||.||+..|++|.++. ...|+++|||++.|++||++
T Consensus 81 rs~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~-~~~L~~~Eqfl~~l~~ip~~ 159 (432)
T smart00498 81 RSQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEED-PEELARAEQFLLLISNIPYL 159 (432)
T ss_pred HHhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccc-hhhcchHHHHHHHHhCCCCH
Confidence 99999999999999999999999999999999999999999999999999999998753 24799999999999999999
Q ss_pred HhhHHHhhhHhhhHHHHHHHHHhHHHHHHHHHHHHcChhHHHHHHHHHHhhhhccCCCCCCCCcceeccCcccccccccC
Q psy4168 233 SERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRS 312 (454)
Q Consensus 233 ~~Rl~~~~f~~~f~~~~~~i~~~l~~l~~a~~~l~~S~~l~~lL~~iL~iGN~lN~g~~~rg~a~GF~L~sL~kL~~~Ks 312 (454)
.+||+||+|+.+|++.+++|.+.|..+..||++|++|+.|+.+|++||++|||||+|+ .||+|+||+|++|.||.+||+
T Consensus 160 ~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~-~rg~A~GFkL~sL~KL~d~Ks 238 (432)
T smart00498 160 EERLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGS-RRGQAYGFKLSSLLKLSDVKS 238 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCC-cCCCcceeeHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999998 699999999999999999999
Q ss_pred CCCCccHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchH
Q psy4168 313 KDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHMEPFR 392 (454)
Q Consensus 313 ~d~k~tLLh~lv~~~~~~~~~~~~~~l~~~el~~v~~A~~v~~~~l~~~~~~L~~~l~~~~~~~~~~~~~s~~~~~~~f~ 392 (454)
+|+++|||||||+++.+++|+.+.+ .+||.+|..|++++ ++|..++++|.+++..++..+..+.... ...+.|.
T Consensus 239 ~d~k~tLLhylv~~i~~~~p~~~~f---~~el~~v~~askvs-~~l~~~~~~l~~~~~~~e~~~~~l~~~~--~~~d~f~ 312 (432)
T smart00498 239 ADNKTTLLHFLVKIIRKKYPDLLDF---YSDLHHLDKAKVNL-EQLEKDVKQLERQIKNLETDLGGLSDPE--NLDDKFI 312 (432)
T ss_pred cCCCccHHHHHHHHHHHhChhhccc---hhhhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCC--CccchHH
Confidence 9999999999999999999987664 47999999999999 9999999999999999987655443222 2347899
Q ss_pred HhHHHHHh----------------hhhhHHHHHhhcccCCCCCCCCCChhhhhHhHHHHHHHHHHHHHHHHHHHHhc
Q psy4168 393 TKMESCVK----------------TGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKKEQDRIIKT 453 (454)
Q Consensus 393 ~~~~~fl~----------------~~~f~~~~~~fge~~~~~~~~~~~~~eFF~~~~~F~~~f~~a~k~~~~~~~k~ 453 (454)
.+|..|+. ...|.+++.||||+++. .++++||++|.+|+..|++|+++|.++.+.|
T Consensus 313 ~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~-----~~~~efF~~f~~F~~~f~ka~~en~~~~~~e 384 (432)
T smart00498 313 EVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKD-----TSPEEFFKDFNEFLKEFSKAAEENIKKEEEE 384 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999976 56799999999999874 6899999999999999999999998776554
No 3
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=100.00 E-value=2.3e-64 Score=515.10 Aligned_cols=344 Identities=31% Similarity=0.589 Sum_probs=286.3
Q ss_pred CCccCCccceeccCCCCCCCCCCccccccccCC---CCChHHHHHHHhhhhhccCcccchhhcccccccccccccccccc
Q psy4168 78 PHVLGPLYWTRLIVSPEIPSDTTPLWKELEEVP---INNLEEFTELFSRQVTAQRPVTRKRQQKSSKVQNVARLIDSKRS 154 (454)
Q Consensus 78 p~~lk~l~W~kI~~~~~~~~~~~tiW~~l~~~~---l~~~~e~e~lF~~~~~~~~~~~~~~~~~~~k~~~~~~vld~kra 154 (454)
+.+||++||++|.... ..+|||+++++.+ -.|+++||++|+.+....... ........+.+.+ +|||+||+
T Consensus 8 ~~k~k~l~W~~i~~~~----~~~tiW~~~~~~~~~~~~d~~~le~~F~~~~~~~~~~-~~~~~~~~~~~~~-~iLd~kr~ 81 (370)
T PF02181_consen 8 KKKLKPLHWDKIPNSK----IKGTIWSKIDEDEFNIDIDFEELEELFAKKEKEKKSK-KKQASKKKKKKKI-SILDPKRS 81 (370)
T ss_dssp SS-B------EESSGG----CTTSCCCCTCCHHHHCTSHHHHHHHHTBSCECHHHH-----HCCCCTTCCE-SSS-HHHH
T ss_pred CCCCcCCCceecCccc----ccCCccccCcccccchhhhHHHHHHHhcccccccccc-ccccccccccccc-cccchHHH
Confidence 4689999999998765 5789999998775 346889999999765432111 0112223344445 99999999
Q ss_pred hhhhhhhccCCCChHHHHHHHhcCCcCCCCHHHHHHHHhccCCHHHHHHHHHhhccCCCCCCCchHHHHHHHhcCCChHh
Q psy4168 155 QNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHFSE 234 (454)
Q Consensus 155 ~ni~I~L~~lk~~~~~i~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~L~~~e~f~~~l~~ip~~~~ 234 (454)
|||+|+|+++++++++|+++|.+||...|+.|.++.|+.++||+||++++++|.++ ...|+++|+|++.|++||++++
T Consensus 82 ~ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~--~~~L~~~E~f~~~l~~ip~~~~ 159 (370)
T PF02181_consen 82 QNIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGD--PATLGPAEQFLLELSKIPRLKE 159 (370)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTS--GTTB-HHHHHHHHHTTSTTHHH
T ss_pred HHHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhcc--HHhhccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988775 4589999999999999999999
Q ss_pred hHHHhhhHhhhHHHHHHHHHhHHHHHHHHHHHHcChhHHHHHHHHHHhhhhccCCCCCCCCcceeccCcccccccccCCC
Q psy4168 235 RIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKD 314 (454)
Q Consensus 235 Rl~~~~f~~~f~~~~~~i~~~l~~l~~a~~~l~~S~~l~~lL~~iL~iGN~lN~g~~~rg~a~GF~L~sL~kL~~~Ks~d 314 (454)
||+||.|+.+|++.++++.+.|..+..||++|++|..|+++|.+||++|||||+|+ .+|+|.||+|++|.||.+||++|
T Consensus 160 rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~-~~g~A~GF~L~sL~kL~~~Ks~d 238 (370)
T PF02181_consen 160 RLEALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGT-PRGNAKGFKLSSLSKLKDTKSND 238 (370)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCS-TTCS-SEE-GGGGGGCCCSB-ST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCC-CccccceecHHhHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999998 57999999999999999999999
Q ss_pred CCccHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchHHh
Q psy4168 315 NSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHMEPFRTK 394 (454)
Q Consensus 315 ~k~tLLh~lv~~~~~~~~~~~~~~l~~~el~~v~~A~~v~~~~l~~~~~~L~~~l~~~~~~~~~~~~~s~~~~~~~f~~~ 394 (454)
+++|||||||+++.++.|+++.+ .+||.+|..|++++++++..++++|++++..++.+++.... ..+..+.|...
T Consensus 239 ~~~tLL~~l~~~~~~~~~~~~~~---~~eL~~v~~a~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~--~~~~~~~f~~~ 313 (370)
T PF02181_consen 239 NKTTLLHYLVKIVEEKFPDLLDL---EDELSSVEKASKVSLDELEQDIKELEKGLEKIKKELEAIEK--DEEDDDKFKEK 313 (370)
T ss_dssp TTSBHHHHHHHHHHTTSGGGGGH---HHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCT--TSSTT-THHHH
T ss_pred CCchHHHHHHHHHHhcChHHhcc---HHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc--cccchhhhhHH
Confidence 99999999999999999887653 36899999999999999999999999999999998886543 22445789999
Q ss_pred HHHHHh----------------hhhhHHHHHhhcccCCCCCCCCCChhhhhHhHHHHHHHHH
Q psy4168 395 MESCVK----------------TGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFK 440 (454)
Q Consensus 395 ~~~fl~----------------~~~f~~~~~~fge~~~~~~~~~~~~~eFF~~~~~F~~~f~ 440 (454)
|..|++ .+.|.+++.||||+++. +++++||++|.+|+..|+
T Consensus 314 ~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~-----~~~~~ff~~l~~F~~~fk 370 (370)
T PF02181_consen 314 MKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKK-----MSPEEFFKILSQFIDMFK 370 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CCHHHHHHHHHHHHHHhC
Confidence 999986 56799999999998863 789999999999999995
No 4
>KOG1925|consensus
Probab=100.00 E-value=1.7e-57 Score=449.30 Aligned_cols=355 Identities=22% Similarity=0.402 Sum_probs=309.4
Q ss_pred CccCCccceeccCCCC--CCC--CCCccccccccCCCCChHHHHHHHhhhhhccCcccchhhcccccccccccccccccc
Q psy4168 79 HVLGPLYWTRLIVSPE--IPS--DTTPLWKELEEVPINNLEEFTELFSRQVTAQRPVTRKRQQKSSKVQNVARLIDSKRS 154 (454)
Q Consensus 79 ~~lk~l~W~kI~~~~~--~~~--~~~tiW~~l~~~~l~~~~e~e~lF~~~~~~~~~~~~~~~~~~~k~~~~~~vld~kra 154 (454)
+.+-+|||..+..... .++ ..+|+|+.++...+| ...++.||..+..+..|+ +|.. ..|.+-. +|||.||+
T Consensus 282 r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~~~~D-~~r~~~LFEsr~~~~~P~--KK~~-E~r~~~~-tVL~~KRt 356 (817)
T KOG1925|consen 282 RKTVKLFWRDVKLAGGHGVSASRPCATLWASLDPVSVD-TARLEHLFESRAKEVLPS--KKAG-EGRRTMT-TVLDPKRT 356 (817)
T ss_pred CceeEEEeecceecCCCCCccccccchhhhccCcceec-HHHHHHHHHHhhhhhccc--hhhc-ccceeee-eecCcccc
Confidence 3667899988765432 222 468999999998876 478999999877665665 2222 2344444 99999999
Q ss_pred hhhhhhhccCCCChHHHHHHHhcCCcCCCCHHHHHHHHhccCCHHHHHHHHHhhccCCCCCCCchHHHHHHHhcCCChHh
Q psy4168 155 QNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHFSE 234 (454)
Q Consensus 155 ~ni~I~L~~lk~~~~~i~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~L~~~e~f~~~l~~ip~~~~ 234 (454)
|.|+|-|.+|. +...|..||+++|+-+++.|.|++|++++||++|++.|......++++.||.+|||++.|++|+.+.+
T Consensus 357 ~AINIGLT~LP-Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLLtLSsI~~L~a 435 (817)
T KOG1925|consen 357 NAINIGLTTLP-PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLLTLSSIGGLAA 435 (817)
T ss_pred cceeeccccCC-chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhhHHHHH
Confidence 99999999986 67789999999999999999999999999999999999998888999999999999999999999999
Q ss_pred hHHHhhhHhhhHHHHHHHHHhHHHHHHHHHHHHcChhHHHHHHHHHHhhhhccCCCCCCCCcceeccCcccccccccCCC
Q psy4168 235 RIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKD 314 (454)
Q Consensus 235 Rl~~~~f~~~f~~~~~~i~~~l~~l~~a~~~l~~S~~l~~lL~~iL~iGN~lN~g~~~rg~a~GF~L~sL~kL~~~Ks~d 314 (454)
||+.|.|+.+|+....+|.+.|-.++.|++++.+|..|+.+|..+|+||||||+. +++||.|++|.|..++|++.
T Consensus 436 RL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT-----~~KgFeLsYLeKvsEVKDtV 510 (817)
T KOG1925|consen 436 RLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGT-----QSKGFELSYLEKVSEVKDTV 510 (817)
T ss_pred HHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCc-----cccceehHhhhhchhhcchH
Confidence 9999999999999999999999999999999999999999999999999999987 58999999999999999999
Q ss_pred CCccHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchHHh
Q psy4168 315 NSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHMEPFRTK 394 (454)
Q Consensus 315 ~k~tLLh~lv~~~~~~~~~~~~~~l~~~el~~v~~A~~v~~~~l~~~~~~L~~~l~~~~~~~~~~~~~s~~~~~~~f~~~ 394 (454)
.|.|||||||..+.+++++..+. ++|+++|.+.++|||++|..++.+|+++++..+..+..+..+ +....+...
T Consensus 511 ~KqsLlhHlc~~vVE~FpessDL---YSEiGA~tRSAkVDf~qL~DNL~qlErrCKaSWe~L~~Iakh---e~~p~l~~r 584 (817)
T KOG1925|consen 511 RKQSLLHHLCSLVVETFPESSDL---YSEIGALTRSAKVDFEQLTDNLGQLERRCKASWESLRSIAKH---ELAPALRAR 584 (817)
T ss_pred HHHHHHHHHHHHHHHhCCcchhH---HHHhHhhhhhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHhh---hccHHHHHH
Confidence 99999999999999999985443 689999999999999999999999999999988887766543 223345667
Q ss_pred HHHHHh----------------hhhhHHHHHhhcccCCCCCCCCCChhhhhHhHHHHHHHHHHHHHHHHHHHHh
Q psy4168 395 MESCVK----------------TGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKKEQDRIIK 452 (454)
Q Consensus 395 ~~~fl~----------------~~~f~~~~~~fge~~~~~~~~~~~~~eFF~~~~~F~~~f~~a~k~~~~~~~k 452 (454)
|..||+ .++|++.+.||||.+.. +.++++++||.++.+|..+|++...+..|+..|
T Consensus 585 ~~~fl~~cA~RI~~LKivhrr~~NRfHSFLLy~Gy~p~a--Irev~iN~fc~~~~EFaLEYRTTRervLQQ~qk 656 (817)
T KOG1925|consen 585 LTHFLDQCARRIAMLKIVHRRVCNRFHSFLLYLGYTPQA--IREVRINQFCHTLREFALEYRTTRERVLQQQQK 656 (817)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh--hhhcCHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 777765 68999999999999876 568999999999999999999988887665443
No 5
>KOG1923|consensus
Probab=100.00 E-value=3.4e-51 Score=423.26 Aligned_cols=355 Identities=24% Similarity=0.374 Sum_probs=300.2
Q ss_pred ccCCccceeccCCCCCCCCCCccccccccCCC---CChHHHHHHHhhhhhccCc---ccchhhccccccccccccccccc
Q psy4168 80 VLGPLYWTRLIVSPEIPSDTTPLWKELEEVPI---NNLEEFTELFSRQVTAQRP---VTRKRQQKSSKVQNVARLIDSKR 153 (454)
Q Consensus 80 ~lk~l~W~kI~~~~~~~~~~~tiW~~l~~~~l---~~~~e~e~lF~~~~~~~~~---~~~~~~~~~~k~~~~~~vld~kr 153 (454)
++..++|..+.+.. .++|++.++.+..+ .|+++||+.|..-.....- ...+.....+..+++ +++|.+|
T Consensus 370 ~~p~lnW~alKP~q----v~~tvf~~~~De~Il~~lD~~~~ee~Fk~~~s~~~~~~e~~a~~~~~~ka~qk~-tLle~~R 444 (830)
T KOG1923|consen 370 KSPSLNWLALKPIQ----VKGTVFHELNDEKILEALDFSRFEEQFKILKSNGQILDESSAVSKAMTKAPQKR-TLLEQRR 444 (830)
T ss_pred cCCCccccccCccc----cccchhhhhhHHHHHHhhhHHHHHHHHHhhhcccchhhhHHHHHHHhhhhhhhh-hHHHHHH
Confidence 56689999998776 47899999988776 2788999999762111000 001111222335667 9999999
Q ss_pred chhhhhhhccCCCChHHHHHHHhcCCcCCCCHHHHHHHHhccCCHHHHHHHHHhhccC-CCCCCCchHHHHHHHhcCCCh
Q psy4168 154 SQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASN-SDLQLDKPEQFLADLADIPHF 232 (454)
Q Consensus 154 a~ni~I~L~~lk~~~~~i~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~-~~~~L~~~e~f~~~l~~ip~~ 232 (454)
++|++|.++ ..+..++|+.||..+|...|+.+.++.|.+++||++|...+++|..+. +...|.+.++|+..++.|.|+
T Consensus 445 ~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFml~lskIErl 523 (830)
T KOG1923|consen 445 LFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFMLSLSKIERL 523 (830)
T ss_pred HHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhhhhhhhhhhh
Confidence 999999999 889999999999999999999999999999999999999999987653 334699999999999999999
Q ss_pred HhhHHHhhhHhhhHHHHHHHHHhHHHHHHHHHHHHcChhHHHHHHHHHHhhhhccCCCCCCCCcceeccCcccccccccC
Q psy4168 233 SERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRS 312 (454)
Q Consensus 233 ~~Rl~~~~f~~~f~~~~~~i~~~l~~l~~a~~~l~~S~~l~~lL~~iL~iGN~lN~g~~~rg~a~GF~L~sL~kL~~~Ks 312 (454)
++|+..|.|+.+|.+.+.-+.+++..++.|...+++|.+|+.+|++||++|||||.+ .||.++||+|.+|.-|.++|+
T Consensus 524 e~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~--kRg~ayGFklqslD~ll~tkS 601 (830)
T KOG1923|consen 524 EEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSS--KRGAAYGFKLQSLDSLLDTKS 601 (830)
T ss_pred HHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCc--ccccccceeccccHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999999998 489999999999999999999
Q ss_pred CCCCccHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchH
Q psy4168 313 KDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHMEPFR 392 (454)
Q Consensus 313 ~d~k~tLLh~lv~~~~~~~~~~~~~~l~~~el~~v~~A~~v~~~~l~~~~~~L~~~l~~~~~~~~~~~~~s~~~~~~~f~ 392 (454)
+|.+.|||||++-.++++++.+..| ++||..+++|+.++++.+..|+.+|.+++...+++.+.-. .+..+..|.
T Consensus 602 tDr~~tLlh~iv~~i~eklp~l~~F---~~el~~~eKa~av~lesV~~Dv~eL~~g~~l~~kE~e~~~---~~~iL~~F~ 675 (830)
T KOG1923|consen 602 TDRSMTLLHYIVLTIAEKLPALQLF---FSELDFVEKATAVQLESVLADVKELNAGMTLAEKETEREG---LDVILSEFL 675 (830)
T ss_pred CccceeeeehhhHHHHHhhHHHHhh---HHHhhccchhhhhhhhccchhHHHHHhHHHHHHHHHhhhc---cchHHHHHH
Confidence 9999999999999999999976543 4789999999999999999999999999999998876421 112223343
Q ss_pred H----hHHHHHh-----hhhhHHHHHhhcccCCCCCCCCCChhhhhHhHHHHHHHHHHHHHHHHHHHHhc
Q psy4168 393 T----KMESCVK-----TGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKKEQDRIIKT 453 (454)
Q Consensus 393 ~----~~~~fl~-----~~~f~~~~~~fge~~~~~~~~~~~~~eFF~~~~~F~~~f~~a~k~~~~~~~k~ 453 (454)
+ +|....+ .+.|.+++.|||+.++. ..|..||..|+.|+..|+.+..+|.++...|
T Consensus 676 ~n~~~kmkkl~~~~k~A~~af~~~~~y~Gespk~-----tppt~ff~~f~~F~~~~k~~~~ene~k~~le 740 (830)
T KOG1923|consen 676 DNNKPKMKKLRKDFKDAAEAFEDVVEYFGESPKT-----TPPTVFFQLFVRFVRAYKMARQENEQKKKLE 740 (830)
T ss_pred hcccHHHHHHHHHHHHHHHHHHhHhHhhCCCCCC-----CCCCccHHHHHHHHHHHHhhhhhhhhhhhHH
Confidence 3 2322222 67899999999999986 6899999999999999999998877776544
No 6
>KOG1922|consensus
Probab=100.00 E-value=1.5e-40 Score=371.47 Aligned_cols=363 Identities=27% Similarity=0.456 Sum_probs=299.7
Q ss_pred CCccCCccceeccCCCCCCCCCCccccccccCCCC-Ch---HHHHHHHhhhhhccCccc---chhhcccccccccccccc
Q psy4168 78 PHVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPIN-NL---EEFTELFSRQVTAQRPVT---RKRQQKSSKVQNVARLID 150 (454)
Q Consensus 78 p~~lk~l~W~kI~~~~~~~~~~~tiW~~l~~~~l~-~~---~e~e~lF~~~~~~~~~~~---~~~~~~~~k~~~~~~vld 150 (454)
...++++||+++.... ....+|+.+....+. +. +..+.+|+.......... ..........+.+ .++|
T Consensus 393 ~~~lk~l~wdk~~~~~----~~~~~w~~~~~~~~~~~~~~~~~~e~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~ 467 (833)
T KOG1922|consen 393 KNKLKPLHWDKTRGSS----KRSMVWSEVDSSSSLFDPPLSELMEALFGLVKFLPSDNGGDTGREEKTAVEKKRL-KVLD 467 (833)
T ss_pred CCCCCCccccccCCCC----ccCCCCCccccCCcCCCCCcccccccchhhhhcccCCCCCCCccccccccccccc-cccC
Confidence 4689999999998764 588999999887652 33 678888976543211110 0000001111345 8999
Q ss_pred cccchhhhhhhccCCCChHHHHHHHhcCCcCCCCHHHHHHHHhccCCHHHHHHHHHhhccCCCCCCCchHHHHHH-HhcC
Q psy4168 151 SKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLAD-LADI 229 (454)
Q Consensus 151 ~kra~ni~I~L~~lk~~~~~i~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~L~~~e~f~~~-l~~i 229 (454)
.+++||++|+|+.+++..+++..+|..+|+..+..+.++++.++.||++|...++.|.++. ..|+..|+|+.+ +..|
T Consensus 468 ~r~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~--~~l~~~e~~~~~~~~~i 545 (833)
T KOG1922|consen 468 PRRPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDP--LTLGDAEKFFFEELSGI 545 (833)
T ss_pred CCCccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCC--CccchHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999998765 579999999887 6779
Q ss_pred CChHhhHHHhhhHhhhHHHHHHHHHhHHHHHHHHHHHHcChhHHHHHHHHHHhhhhccCCCCCCCCcceeccCccccccc
Q psy4168 230 PHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKD 309 (454)
Q Consensus 230 p~~~~Rl~~~~f~~~f~~~~~~i~~~l~~l~~a~~~l~~S~~l~~lL~~iL~iGN~lN~g~~~rg~a~GF~L~sL~kL~~ 309 (454)
|.+..|++++.|+..|...+..+...+..+..||.+++++..|.+++++||..|||||.|+ .||+|+||+|++|.+|.|
T Consensus 546 p~~~~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~-~rg~a~~f~l~~l~kl~d 624 (833)
T KOG1922|consen 546 PEFEERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGT-NRGSAHGFKLDALLKLSD 624 (833)
T ss_pred hHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccc-cccccchhhHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999995 899999999999999999
Q ss_pred ccCCCCCccHHHHHHHHHHhhCCC-----C-------C-CCCCCCCCCCchHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Q psy4168 310 VRSKDNSVTLLHFIVRTYLRNSEN-----P-------L-NESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISM 376 (454)
Q Consensus 310 ~Ks~d~k~tLLh~lv~~~~~~~~~-----~-------~-~~~l~~~el~~v~~A~~v~~~~l~~~~~~L~~~l~~~~~~~ 376 (454)
+|+.++++++||+++..+.+.... . + .......|+..|.+|++++++.+.+++..|.+++..+.+.+
T Consensus 625 ~ks~~~~~~~l~~~~~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~~~~~~l 704 (833)
T KOG1922|consen 625 VKSSDGKTTLLHFVVPEVVRSEGKRSVIDVEKSRRLGLPSLLKFLSDLSNVESAAKIDLEVLAEECSDLKKGLEKVKREL 704 (833)
T ss_pred hhcccccchhhhhhHHHHHHhhccccchhhhhhhhccchhhhcccchhcccchhhccCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988777666544443221 0 0 00111368999999999999999999999999999999888
Q ss_pred H-HhhhcCCCCCCcchHHhHHHHHh----------------hhhhHHHHHhhcccCCCCCCCCCChhhhhHhHHHHHHHH
Q psy4168 377 N-KVVQESKPDHMEPFRTKMESCVK----------------TGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDF 439 (454)
Q Consensus 377 ~-~~~~~s~~~~~~~f~~~~~~fl~----------------~~~f~~~~~~fge~~~~~~~~~~~~~eFF~~~~~F~~~f 439 (454)
. ..-.++ ....+.|...|..|+. ...+..+++|||++++. ..++.+||.++..|+.-|
T Consensus 705 ~~~~~~~~-~~~~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~~----~~~~~~~f~~~r~fl~~~ 779 (833)
T KOG1922|consen 705 PTASKNES-LPPGDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPKE----EITPEQVFSILRDFLRTF 779 (833)
T ss_pred hhhhcCCC-CCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCHHHHHHHHHHHHHHH
Confidence 5 322222 2356789999999986 35678999999999852 478999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q psy4168 440 KDFWKKEQDRIIKT 453 (454)
Q Consensus 440 ~~a~k~~~~~~~k~ 453 (454)
..+++++....+|+
T Consensus 780 ~~~~~e~~~~~~k~ 793 (833)
T KOG1922|consen 780 DKAHEENKKAEEKE 793 (833)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998877766
No 7
>KOG1924|consensus
Probab=99.06 E-value=4.8e-10 Score=118.03 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=24.6
Q ss_pred CccceeccCCCCCCCCCCccccccccCCCC--------ChHHHH--HHHhhhh
Q psy4168 83 PLYWTRLIVSPEIPSDTTPLWKELEEVPIN--------NLEEFT--ELFSRQV 125 (454)
Q Consensus 83 ~l~W~kI~~~~~~~~~~~tiW~~l~~~~l~--------~~~e~e--~lF~~~~ 125 (454)
+.+..+-...+....++...|.+|...++. ..+.|+ ++|+.-.
T Consensus 611 P~gLkpKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~ 663 (1102)
T KOG1924|consen 611 PFGLKPKKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLA 663 (1102)
T ss_pred CCCCCccccCCCCCccccCCccccCccccCccceeeecchhhccchHHHHHHH
Confidence 344433333333334789999999877652 223444 6787644
No 8
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=95.26 E-value=0.028 Score=66.17 Aligned_cols=8 Identities=13% Similarity=0.771 Sum_probs=4.5
Q ss_pred Cccccccc
Q psy4168 100 TPLWKELE 107 (454)
Q Consensus 100 ~tiW~~l~ 107 (454)
..+|..+.
T Consensus 1762 ~s~W~Ri~ 1769 (2039)
T PRK15319 1762 GSVWARFK 1769 (2039)
T ss_pred CCeEEEEe
Confidence 35666654
No 9
>PHA03247 large tegument protein UL36; Provisional
Probab=95.22 E-value=0.056 Score=65.40 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=6.5
Q ss_pred HhHHHHHHHHHHH
Q psy4168 254 SKLNNIKSVCEFL 266 (454)
Q Consensus 254 ~~l~~l~~a~~~l 266 (454)
..|..|.+||.-|
T Consensus 3109 salAlLi~ACr~i 3121 (3151)
T PHA03247 3109 SALAVLIEACRRI 3121 (3151)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555543
No 10
>KOG1923|consensus
Probab=94.77 E-value=0.071 Score=57.80 Aligned_cols=20 Identities=10% Similarity=0.100 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4168 432 WAPFCHDFKDFWKKEQDRII 451 (454)
Q Consensus 432 ~~~F~~~f~~a~k~~~~~~~ 451 (454)
|..-...|-++++.+.+.-+
T Consensus 715 ff~~f~~F~~~~k~~~~ene 734 (830)
T KOG1923|consen 715 FFQLFVRFVRAYKMARQENE 734 (830)
T ss_pred cHHHHHHHHHHHHhhhhhhh
Confidence 44444455566666654433
No 11
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=93.13 E-value=0.14 Score=60.67 Aligned_cols=15 Identities=7% Similarity=-0.113 Sum_probs=6.7
Q ss_pred ceeccCccccccccc
Q psy4168 297 DGFGLEILPKLKDVR 311 (454)
Q Consensus 297 ~GF~L~sL~kL~~~K 311 (454)
.||.+++..+..-.+
T Consensus 1858 sG~YVDswlQy~wF~ 1872 (2039)
T PRK15319 1858 SGAYVDSWYQYGFYN 1872 (2039)
T ss_pred cceEEEEEEEeeEec
Confidence 344444444444433
No 12
>KOG1925|consensus
Probab=91.17 E-value=0.24 Score=51.30 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=9.1
Q ss_pred CccCCccceeccC
Q psy4168 79 HVLGPLYWTRLIV 91 (454)
Q Consensus 79 ~~lk~l~W~kI~~ 91 (454)
.+-+.-.|..+..
T Consensus 303 ~r~~~t~W~s~D~ 315 (817)
T KOG1925|consen 303 SRPCATLWASLDP 315 (817)
T ss_pred ccccchhhhccCc
Confidence 4566778988754
No 13
>PRK09752 adhesin; Provisional
Probab=85.68 E-value=0.75 Score=52.80 Aligned_cols=8 Identities=13% Similarity=-0.085 Sum_probs=4.8
Q ss_pred Cccccccc
Q psy4168 100 TPLWKELE 107 (454)
Q Consensus 100 ~tiW~~l~ 107 (454)
.++|..+.
T Consensus 985 ~s~W~R~~ 992 (1250)
T PRK09752 985 QTLNLRVI 992 (1250)
T ss_pred cceEEEee
Confidence 46676654
No 14
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=84.94 E-value=0.68 Score=52.53 Aligned_cols=7 Identities=29% Similarity=1.018 Sum_probs=3.3
Q ss_pred ccccccc
Q psy4168 102 LWKELEE 108 (454)
Q Consensus 102 iW~~l~~ 108 (454)
.|.++.+
T Consensus 132 pWe~~~e 138 (2365)
T COG5178 132 PWEDVSE 138 (2365)
T ss_pred hHhhhhe
Confidence 4554443
No 15
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=84.41 E-value=0.8 Score=51.97 Aligned_cols=15 Identities=13% Similarity=0.158 Sum_probs=6.3
Q ss_pred HHHHcChhHHHHHHH
Q psy4168 264 EFLMKSEHLKKVIAI 278 (454)
Q Consensus 264 ~~l~~S~~l~~lL~~ 278 (454)
.+++.++.++++.-+
T Consensus 630 ~QIraCKd~KhliyY 644 (2365)
T COG5178 630 KQIRACKDWKHLIYY 644 (2365)
T ss_pred HHHHHhhhHHHHHHH
Confidence 344444444444333
No 16
>KOG4849|consensus
Probab=81.90 E-value=5.5 Score=39.78 Aligned_cols=10 Identities=30% Similarity=0.816 Sum_probs=6.3
Q ss_pred HHHHHHHhhh
Q psy4168 115 EEFTELFSRQ 124 (454)
Q Consensus 115 ~e~e~lF~~~ 124 (454)
.|||+.-.+.
T Consensus 360 AEFEdiM~RN 369 (498)
T KOG4849|consen 360 AEFEDIMTRN 369 (498)
T ss_pred HHHHHHHhhc
Confidence 5677776543
No 17
>PRK15313 autotransport protein MisL; Provisional
Probab=80.89 E-value=3.4 Score=46.63 Aligned_cols=6 Identities=33% Similarity=0.811 Sum_probs=2.7
Q ss_pred cccccc
Q psy4168 101 PLWKEL 106 (454)
Q Consensus 101 tiW~~l 106 (454)
.+|..+
T Consensus 678 s~WlR~ 683 (955)
T PRK15313 678 SLWMRN 683 (955)
T ss_pred ceEEEe
Confidence 445444
No 18
>PRK15313 autotransport protein MisL; Provisional
Probab=80.09 E-value=3.5 Score=46.58 Aligned_cols=17 Identities=12% Similarity=-0.017 Sum_probs=10.1
Q ss_pred ceeccCcccccccccCC
Q psy4168 297 DGFGLEILPKLKDVRSK 313 (454)
Q Consensus 297 ~GF~L~sL~kL~~~Ks~ 313 (454)
.||.+|+..+..-.+..
T Consensus 770 sG~YVDswlQynwF~N~ 786 (955)
T PRK15313 770 SGAYVDTWMLYNWFDNK 786 (955)
T ss_pred CcEEEeeeeeeeeeccc
Confidence 46666666666655554
No 19
>KOG1922|consensus
Probab=79.88 E-value=6.2 Score=45.03 Aligned_cols=21 Identities=14% Similarity=-0.102 Sum_probs=16.4
Q ss_pred HcChhHHHHHHHHHHhhhhcc
Q psy4168 267 MKSEHLKKVIAIILSLGNFMN 287 (454)
Q Consensus 267 ~~S~~l~~lL~~iL~iGN~lN 287 (454)
+....+..+.+++...|++++
T Consensus 631 ~~~~l~~~~~e~~~~~~~r~~ 651 (833)
T KOG1922|consen 631 KTTLLHFVVPEVVRSEGKRSV 651 (833)
T ss_pred cchhhhhhHHHHHHhhccccc
Confidence 445667788899999999777
No 20
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=72.97 E-value=13 Score=36.15 Aligned_cols=14 Identities=21% Similarity=0.074 Sum_probs=7.2
Q ss_pred HHHHHhhhccccCC
Q psy4168 7 RAKRRKKKETYSNI 20 (454)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (454)
|+|=++|..+.+..
T Consensus 135 RaQIA~IV~~qe~~ 148 (253)
T PF05308_consen 135 RAQIAKIVAAQEQS 148 (253)
T ss_pred HHHHHHHHhccccc
Confidence 44555565554433
No 21
>KOG2675|consensus
Probab=72.93 E-value=4.9 Score=41.43 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=12.6
Q ss_pred cccccccchhhhh-hhccCC
Q psy4168 147 RLIDSKRSQNVGI-LAQSLH 165 (454)
Q Consensus 147 ~vld~kra~ni~I-~L~~lk 165 (454)
.+.|-=.+||++| +++++.
T Consensus 392 a~~eiinc~~v~iQv~g~~P 411 (480)
T KOG2675|consen 392 AIVEIINCQDVQIQVMGSVP 411 (480)
T ss_pred eeeEEeeccceeeEEcccCC
Confidence 4455566788888 567664
No 22
>KOG2675|consensus
Probab=70.00 E-value=4.8 Score=41.46 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=7.2
Q ss_pred CCCchHHHHHHH
Q psy4168 215 QLDKPEQFLADL 226 (454)
Q Consensus 215 ~L~~~e~f~~~l 226 (454)
+..-+|||....
T Consensus 456 EfpvPEQfkt~~ 467 (480)
T KOG2675|consen 456 EFPVPEQFKTKF 467 (480)
T ss_pred cccChHHHhhhc
Confidence 455577776543
No 23
>KOG1830|consensus
Probab=63.93 E-value=22 Score=36.60 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=5.0
Q ss_pred hhhhhhccC
Q psy4168 156 NVGILAQSL 164 (454)
Q Consensus 156 ni~I~L~~l 164 (454)
+.+|+++++
T Consensus 489 vatiLsRRi 497 (518)
T KOG1830|consen 489 VATILSRRI 497 (518)
T ss_pred HHHHHHHHH
Confidence 445666654
No 24
>KOG4590|consensus
Probab=63.70 E-value=19 Score=37.35 Aligned_cols=15 Identities=13% Similarity=-0.079 Sum_probs=6.9
Q ss_pred CChHHHHHHHhcCCc
Q psy4168 166 IEFSEIESAIFNMDA 180 (454)
Q Consensus 166 ~~~~~i~~ai~~~d~ 180 (454)
...+.....+..+..
T Consensus 319 ~a~~~~~~g~~~~s~ 333 (409)
T KOG4590|consen 319 DAPDSGRSGINTVSS 333 (409)
T ss_pred CCccccccccCCccc
Confidence 344555555444433
No 25
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=62.45 E-value=32 Score=33.43 Aligned_cols=12 Identities=8% Similarity=0.315 Sum_probs=8.0
Q ss_pred chhhhhhhccCC
Q psy4168 154 SQNVGILAQSLH 165 (454)
Q Consensus 154 a~ni~I~L~~lk 165 (454)
++.-.|+|++|-
T Consensus 159 andt~v~lgrld 170 (297)
T PF07174_consen 159 ANDTSVVLGRLD 170 (297)
T ss_pred CCCceEEecccc
Confidence 456677787763
No 26
>KOG2391|consensus
Probab=58.20 E-value=33 Score=34.42 Aligned_cols=8 Identities=25% Similarity=0.646 Sum_probs=3.6
Q ss_pred HHHHHHHh
Q psy4168 220 EQFLADLA 227 (454)
Q Consensus 220 e~f~~~l~ 227 (454)
++|+..+.
T Consensus 334 ~~yLr~VR 341 (365)
T KOG2391|consen 334 DQYLRHVR 341 (365)
T ss_pred HHHHHHHH
Confidence 44444443
No 27
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=55.44 E-value=32 Score=36.09 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=57.5
Q ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchHHhHHHHH----h----------------hhhhHHH
Q psy4168 348 DRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHMEPFRTKMESCV----K----------------TGKFKSV 407 (454)
Q Consensus 348 ~~A~~v~~~~l~~~~~~L~~~l~~~~~~~~~~~~~s~~~~~~~f~~~~~~fl----~----------------~~~f~~~ 407 (454)
..++...++.|...+..+...+..+..-.- ........+.|...+..|+ + ...+.+.
T Consensus 319 ~~~a~~~~~~l~~~~~~~~~~~~~~~~yfg---e~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~~~~~~ 395 (432)
T smart00498 319 LKAAKEKYDKLQKDLSDLKTRFEKLVEYYG---EDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQLVKET 395 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888877776654332 2111112234444444443 2 2234577
Q ss_pred HHhhcccCCCCCCCCCChhhhhHhHHHHHHHHHHHHHH
Q psy4168 408 LKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKK 445 (454)
Q Consensus 408 ~~~fge~~~~~~~~~~~~~eFF~~~~~F~~~f~~a~k~ 445 (454)
..||+..+... ...+..+|.+..+|...+.+.+++
T Consensus 396 ~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~d~~~~~ 430 (432)
T smart00498 396 TEYEQSSSRQK---ERNPSMDFEVERDFLGVLDSLLEE 430 (432)
T ss_pred Hhhhhhhhhhh---hccchhhhhhhhhhhhhHHHHHHh
Confidence 88998755331 246777899999999999888775
No 28
>PHA03211 serine/threonine kinase US3; Provisional
Probab=48.43 E-value=23 Score=37.51 Aligned_cols=15 Identities=7% Similarity=0.189 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHcC
Q psy4168 255 KLNNIKSVCEFLMKS 269 (454)
Q Consensus 255 ~l~~l~~a~~~l~~S 269 (454)
.+..+..|+..|.+.
T Consensus 265 i~~qi~~aL~yLH~~ 279 (461)
T PHA03211 265 VARQLLSAIDYIHGE 279 (461)
T ss_pred HHHHHHHHHHHHHHC
Confidence 344444555555543
No 29
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=44.39 E-value=62 Score=31.64 Aligned_cols=105 Identities=14% Similarity=0.237 Sum_probs=61.9
Q ss_pred cChhHHHHHHHHHHhhhhccCCCCCCCCcceeccCcccccccccCC--------CCCccHHHHHHHHHHhhCC--CCCCC
Q psy4168 268 KSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSK--------DNSVTLLHFIVRTYLRNSE--NPLNE 337 (454)
Q Consensus 268 ~S~~l~~lL~~iL~iGN~lN~g~~~rg~a~GF~L~sL~kL~~~Ks~--------d~k~tLLh~lv~~~~~~~~--~~~~~ 337 (454)
+.-..+.+|.+.-.+=+.++.....-....++.++.=.|+.|+|.. +.+.+|.+.|-+.+.-+.. ..+.
T Consensus 77 DGyAVkELLKia~lLy~A~~~~~~~e~~~~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~- 155 (267)
T PF10234_consen 77 DGYAVKELLKIASLLYSAMKSAPSDEEDDSLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLGKEVELREERQRALA- 155 (267)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCccccccchhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHc-
Confidence 4445556666666666666654211122355666665788888874 3566777777654432210 0111
Q ss_pred CCCCCCCCchHHHhcccHHHHHHHHHHHHHHHHHHHHH
Q psy4168 338 SLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTIS 375 (454)
Q Consensus 338 ~l~~~el~~v~~A~~v~~~~l~~~~~~L~~~l~~~~~~ 375 (454)
...|+..++++-+-.+..+..++.++++.+..+...
T Consensus 156 --r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~d 191 (267)
T PF10234_consen 156 --RPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASD 191 (267)
T ss_pred --CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123677888887777777777777777777766543
No 30
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.08 E-value=1.7e+02 Score=27.36 Aligned_cols=30 Identities=13% Similarity=0.356 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy4168 353 VVFDDIHSQLSTLAKKLDAVTISMNKVVQE 382 (454)
Q Consensus 353 v~~~~l~~~~~~L~~~l~~~~~~~~~~~~~ 382 (454)
..++++..++.+|+.+|+.+-+.....++.
T Consensus 2 ~~~~~~E~~~~~le~~l~kl~K~~~~~~d~ 31 (200)
T cd07637 2 ATIDEVETDVVEIEAKLDKLVKLCSGMIEA 31 (200)
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777766666555543
No 31
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.44 E-value=2.9e+02 Score=25.84 Aligned_cols=29 Identities=10% Similarity=0.334 Sum_probs=19.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4168 353 VVFDDIHSQLSTLAKKLDAVTISMNKVVQ 381 (454)
Q Consensus 353 v~~~~l~~~~~~L~~~l~~~~~~~~~~~~ 381 (454)
..++++..++.+|+..+..+.+.....++
T Consensus 2 ~~i~~~E~~~~~le~~l~kl~K~~k~~~~ 30 (200)
T cd07639 2 AAIEEVEAEVSELETRLEKLVKLGSGMLE 30 (200)
T ss_pred chHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777776666555444
No 32
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=39.79 E-value=76 Score=33.95 Aligned_cols=17 Identities=12% Similarity=0.470 Sum_probs=7.9
Q ss_pred cHHHHHHHHHHHHHHHH
Q psy4168 354 VFDDIHSQLSTLAKKLD 370 (454)
Q Consensus 354 ~~~~l~~~~~~L~~~l~ 370 (454)
.++.|.+.|.+++.+++
T Consensus 488 ~L~aVn~~Ik~ie~~~~ 504 (574)
T PF07462_consen 488 HLDAVNEQIKEIEDEIN 504 (574)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 44444444444444443
No 33
>PHA03211 serine/threonine kinase US3; Provisional
Probab=39.70 E-value=51 Score=34.83 Aligned_cols=7 Identities=43% Similarity=0.667 Sum_probs=2.9
Q ss_pred HHHHHHH
Q psy4168 200 EINLIRA 206 (454)
Q Consensus 200 E~~~l~~ 206 (454)
|++.++.
T Consensus 210 E~~iL~~ 216 (461)
T PHA03211 210 EARLLRR 216 (461)
T ss_pred HHHHHHH
Confidence 4444443
No 34
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=38.92 E-value=1.3e+02 Score=32.20 Aligned_cols=54 Identities=11% Similarity=0.206 Sum_probs=24.8
Q ss_pred ccccccchhhhhhhccCC-CChHHHHHHHhcCCcCCCCHHHHHHHHhccCCHHHH
Q psy4168 148 LIDSKRSQNVGILAQSLH-IEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEI 201 (454)
Q Consensus 148 vld~kra~ni~I~L~~lk-~~~~~i~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~ 201 (454)
|+..=-..+.|+.|.-.. .+....+.+|..-.--....-.|-..++-+-+.|-+
T Consensus 309 vvNALl~g~~GL~L~p~ec~sW~~avaaL~~RthG~~plH~L~~vL~~ia~~EGv 363 (582)
T PF03276_consen 309 VVNALLGGHLGLALTPNECGSWASAVAALYQRTHGSYPLHQLADVLRGIANQEGV 363 (582)
T ss_pred HHHHHhcCCCccccCccccccHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhH
Confidence 344444456666665443 355555666554222233333344444434444433
No 35
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=36.81 E-value=90 Score=33.41 Aligned_cols=6 Identities=17% Similarity=0.335 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy4168 322 FIVRTY 327 (454)
Q Consensus 322 ~lv~~~ 327 (454)
||...|
T Consensus 459 YI~~SI 464 (574)
T PF07462_consen 459 YIGASI 464 (574)
T ss_pred HHHHHH
Confidence 443333
No 36
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=36.51 E-value=1.7e+02 Score=31.51 Aligned_cols=15 Identities=7% Similarity=0.193 Sum_probs=7.7
Q ss_pred ccCCHHHHHHHHHhh
Q psy4168 194 VRATDEEINLIRAHL 208 (454)
Q Consensus 194 ~~Pt~eE~~~l~~~~ 208 (454)
++|--.-+.+++.+.
T Consensus 388 lLPGQAvVt~~Q~rL 402 (582)
T PF03276_consen 388 LLPGQAVVTAMQQRL 402 (582)
T ss_pred cCChHHHHHHHHHHh
Confidence 455555555555443
No 37
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.44 E-value=82 Score=34.45 Aligned_cols=7 Identities=14% Similarity=0.648 Sum_probs=2.9
Q ss_pred HHHHHHH
Q psy4168 115 EEFTELF 121 (454)
Q Consensus 115 ~e~e~lF 121 (454)
++++..+
T Consensus 465 ~~~~~~w 471 (585)
T PRK14950 465 EQLEAIW 471 (585)
T ss_pred HHHHHHH
Confidence 3344444
No 38
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=34.81 E-value=87 Score=31.22 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=15.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHcCh
Q psy4168 245 FSDSIALIDSKLNNIKSVCEFLMKSE 270 (454)
Q Consensus 245 f~~~~~~i~~~l~~l~~a~~~l~~S~ 270 (454)
|+..+-.-...|..|+.-.+++|.|-
T Consensus 284 FerQVI~EL~~LQqIEr~AkeMRasA 309 (407)
T PF04625_consen 284 FERQVIAELKMLQQIERMAKEMRASA 309 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45444333446677777777776653
No 39
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.40 E-value=3.5e+02 Score=25.25 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4168 354 VFDDIHSQLSTLAKKLDAVTISMNKVVQ 381 (454)
Q Consensus 354 ~~~~l~~~~~~L~~~l~~~~~~~~~~~~ 381 (454)
.++++..++..|+..++.+-+.+..+++
T Consensus 3 ~i~~~E~d~~~Le~~l~Kl~K~~~~~~d 30 (200)
T cd07638 3 ALEDVEGDVAELELKLDKLVKLCIGMID 30 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777776666655544
No 40
>KOG3397|consensus
Probab=31.47 E-value=53 Score=29.94 Aligned_cols=37 Identities=30% Similarity=0.514 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy4168 20 IFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGT 56 (454)
Q Consensus 20 ~~~~~~~~~~~~p~pp~~~~~~~~~~~~~pppp~~~~ 56 (454)
++++-..+....+.+||+|+||+.|-.-.-.+.+++.
T Consensus 172 ~~~~~a~~~~~~~~~pp~pppp~~p~~~t~s~s~~~~ 208 (225)
T KOG3397|consen 172 IAQPSASSTVSASAPPPPPPPPMAPKMVTRSTSPIVD 208 (225)
T ss_pred cCCcccccccCCCCCCCcccCCCCccceecCCCCCCC
No 41
>KOG0559|consensus
Probab=29.52 E-value=1.5e+02 Score=30.16 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=8.6
Q ss_pred HhcccHHHHHHHHHHHHH
Q psy4168 350 AASVVFDDIHSQLSTLAK 367 (454)
Q Consensus 350 A~~v~~~~l~~~~~~L~~ 367 (454)
|..++|.+|...|..|..
T Consensus 339 ae~Mn~adIE~~i~~L~~ 356 (457)
T KOG0559|consen 339 AESMNFADIEKTIAGLGK 356 (457)
T ss_pred cccccHHHHHHHHHHHHH
Confidence 344455555554444443
No 42
>PF13907 DUF4208: Domain of unknown function (DUF4208)
Probab=28.52 E-value=27 Score=28.68 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=28.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHcChhHHHHHHHHHHhhhhccCC
Q psy4168 248 SIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGG 289 (454)
Q Consensus 248 ~~~~i~~~l~~l~~a~~~l~~S~~l~~lL~~iL~iGN~lN~g 289 (454)
.+.-++..|..|...-+.+-+......+=..++.||||++.-
T Consensus 21 ~m~Pvkk~LkkL~~~~~~l~~~e~a~~lk~~L~~IG~~I~~~ 62 (100)
T PF13907_consen 21 LMRPVKKSLKKLKKPKKGLPRKERAKILKKELLKIGDFIDSI 62 (100)
T ss_pred HhHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444467777888899999999864
No 43
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=26.49 E-value=97 Score=30.89 Aligned_cols=8 Identities=13% Similarity=0.301 Sum_probs=4.6
Q ss_pred cceeccCc
Q psy4168 296 ADGFGLEI 303 (454)
Q Consensus 296 a~GF~L~s 303 (454)
..-|+|++
T Consensus 315 ~s~ykl~Y 322 (407)
T PF04625_consen 315 TSPYKLRY 322 (407)
T ss_pred CCCeeecc
Confidence 45666654
No 44
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=26.36 E-value=4.5e+02 Score=23.77 Aligned_cols=92 Identities=9% Similarity=0.155 Sum_probs=54.8
Q ss_pred hHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchHHhHHHHHhhhhhHHHHHhhcccCCCCCCCCCChh
Q psy4168 347 VDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHMEPFRTKMESCVKTGKFKSVLKFYQYIPKGIPESDVTPK 426 (454)
Q Consensus 347 v~~A~~v~~~~l~~~~~~L~~~l~~~~~~~~~~~~~s~~~~~~~f~~~~~~fl~~~~f~~~~~~fge~~~~~~~~~~~~~ 426 (454)
|+.+.+.....+...++++...++.+...+..+..+ ..-.+.+.+..+ .+.|++++.-|-+-.+ .+.+
T Consensus 72 vk~L~k~~~~~l~d~inE~t~k~~El~~~i~el~~~----~~Ks~~~~l~q~--~~~~eEtv~~~ieqqk------~~r~ 139 (165)
T PF09602_consen 72 VKQLRKATGNSLNDSINEWTDKLNELSAKIQELLLS----PSKSSFSLLSQI--SKQYEETVKQLIEQQK------LTRE 139 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----hHHHHHHHHHHH--HhhHHHHHHHHHHHHH------HHHH
Confidence 344445567777888888888888887776544221 111222222222 5566666654433222 3678
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHH
Q psy4168 427 DLFMLWAPFCHDFKDFWKKEQDRI 450 (454)
Q Consensus 427 eFF~~~~~F~~~f~~a~k~~~~~~ 450 (454)
+|-.....|+..|+..-+.-.++-
T Consensus 140 e~qk~~~~yv~~~k~~q~~~~~~f 163 (165)
T PF09602_consen 140 EWQKVLDAYVEQAKSSQKELAKKF 163 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888899999887766655443
No 45
>KOG4500|consensus
Probab=26.17 E-value=3.2e+02 Score=28.87 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=43.4
Q ss_pred HHHHHHHHHcChhHHHHHHHHHHhhhhccCCCCCCCCcceecc---Ccccccccc----cCCCCCccHHHHHHHHHH
Q psy4168 259 IKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGL---EILPKLKDV----RSKDNSVTLLHFIVRTYL 328 (454)
Q Consensus 259 l~~a~~~l~~S~~l~~lL~~iL~iGN~lN~g~~~rg~a~GF~L---~sL~kL~~~----Ks~d~k~tLLh~lv~~~~ 328 (454)
+.+-...+..|....-+..-+|++|||.-.. +.-..+ +.+.||.++ |+.|++.++-|-....++
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D------~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALR 386 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRD------DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALR 386 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccc------hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHH
Confidence 3344455667777888888999999995443 322222 456676665 667888999988776553
No 46
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.85 E-value=1.1e+02 Score=18.24 Aligned_cols=19 Identities=16% Similarity=0.471 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4168 355 FDDIHSQLSTLAKKLDAVT 373 (454)
Q Consensus 355 ~~~l~~~~~~L~~~l~~~~ 373 (454)
++.+...|..|+++|+.|.
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566777777877777765
No 47
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.72 E-value=5.4e+02 Score=23.89 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4168 354 VFDDIHSQLSTLAKKLDAVTISMNKVVQ 381 (454)
Q Consensus 354 ~~~~l~~~~~~L~~~l~~~~~~~~~~~~ 381 (454)
.+.++..++..|+..+..+.+....+++
T Consensus 3 ~l~~~E~~~~~l~~~l~kl~K~~~~~~~ 30 (200)
T cd07603 3 SLEQVEADVSELETRLEKLLKLCNGMVD 30 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777766666555444
No 48
>KOG0566|consensus
Probab=24.73 E-value=1.4e+02 Score=34.18 Aligned_cols=9 Identities=33% Similarity=0.076 Sum_probs=3.8
Q ss_pred cCCccceec
Q psy4168 81 LGPLYWTRL 89 (454)
Q Consensus 81 lk~l~W~kI 89 (454)
+.++.|.+.
T Consensus 1069 ~~p~~~~~~ 1077 (1080)
T KOG0566|consen 1069 GPPLPNVPL 1077 (1080)
T ss_pred CCCCCCCCC
Confidence 344444433
No 49
>PF03800 Nuf2: Nuf2 family; InterPro: IPR005549 Members of this family are components of the mitotic spindle. It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Q9C953 from SWISSPROT. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.; GO: 0007067 mitosis, 0000775 chromosome, centromeric region; PDB: 2VE7_D 3IZ0_D.
Probab=24.10 E-value=1.6e+02 Score=25.65 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=20.6
Q ss_pred CCChHHHHHHHhcCCcCCCCHHHHHHHHhccCCHHHHHHH
Q psy4168 165 HIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLI 204 (454)
Q Consensus 165 k~~~~~i~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l 204 (454)
.++.++|..++..++-. ++.+.|.+ ||++-+..|
T Consensus 11 ~L~~~eIv~~L~~~~~~-~t~~dl~k-----Pt~e~v~~l 44 (146)
T PF03800_consen 11 LLSPDEIVNCLQECGIP-VTEEDLKK-----PTPEFVQKL 44 (146)
T ss_dssp S--HHHHHHHHHHHT---HHHHC--G-------HHHHHHH
T ss_pred CCCHHHHHHHHHHCCCC-cCHHHHcC-----CCHHHHHHH
Confidence 36889999999998765 66666655 998887765
No 50
>TIGR02131 phaP_Bmeg polyhydroxyalkanoic acid inclusion protein PhaP. This model describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage (see McCool,G.J. and Cannon,M.C, 1999).
Probab=23.34 E-value=3.9e+02 Score=23.37 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=29.6
Q ss_pred hhhhHHHHHhhcccCCCCCCCCCChhhhhHhHHHHHHHHHHHHHHHHH
Q psy4168 401 TGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKKEQD 448 (454)
Q Consensus 401 ~~~f~~~~~~fge~~~~~~~~~~~~~eFF~~~~~F~~~f~~a~k~~~~ 448 (454)
...|+.+.+-|-|--+ .+.+||=..+..|+.+|+..-++-.+
T Consensus 120 ~~QfeettkqfiEqqq------~qReE~Q~qld~fleefKS~Q~e~ak 161 (165)
T TIGR02131 120 QEQFEETTKQFIEEQK------KQREEAQHQLDAFLEEFKSKQKEFAK 161 (165)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888887766543 36788888888888888765554433
No 51
>KOG0559|consensus
Probab=23.32 E-value=2.6e+02 Score=28.66 Aligned_cols=12 Identities=33% Similarity=0.684 Sum_probs=6.4
Q ss_pred CChHHHHHHHhc
Q psy4168 166 IEFSEIESAIFN 177 (454)
Q Consensus 166 ~~~~~i~~ai~~ 177 (454)
|++.+|...|..
T Consensus 342 Mn~adIE~~i~~ 353 (457)
T KOG0559|consen 342 MNFADIEKTIAG 353 (457)
T ss_pred ccHHHHHHHHHH
Confidence 455555555544
No 52
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=22.63 E-value=2e+02 Score=28.50 Aligned_cols=10 Identities=30% Similarity=0.341 Sum_probs=4.4
Q ss_pred HHHHHHHHHc
Q psy4168 259 IKSVCEFLMK 268 (454)
Q Consensus 259 l~~a~~~l~~ 268 (454)
+..|+..|.+
T Consensus 177 i~~aL~~LH~ 186 (353)
T PLN00034 177 ILSGIAYLHR 186 (353)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 53
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=21.39 E-value=3e+02 Score=21.74 Aligned_cols=51 Identities=16% Similarity=0.256 Sum_probs=34.0
Q ss_pred hHHHhhhHhhhHHHHHHHHHhHHHHHHHHHHHHcChhHHHHHHHHHHhhhhccCCC
Q psy4168 235 RIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGN 290 (454)
Q Consensus 235 Rl~~~~f~~~f~~~~~~i~~~l~~l~~a~~~l~~S~~l~~lL~~iL~iGN~lN~g~ 290 (454)
|-+++.-...+.+.+.++...+..+..-|+.|.+-..+-. --|||.|+.++
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq-----~YI~nLm~~s~ 68 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQ-----QYIGNLMSSSS 68 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhh
Confidence 3344444455777888888888999998888865544332 24778887643
No 54
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=21.35 E-value=1.9e+02 Score=28.29 Aligned_cols=69 Identities=23% Similarity=0.427 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCccceeccCCCCCCCCCCcccc
Q psy4168 31 PPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWTRLIVSPEIPSDTTPLWK 104 (454)
Q Consensus 31 ~p~pp~~~~~~~~~~~~~pppp~~~~pppppp~~~~~~ppp~~~~~~p~~lk~l~W~kI~~~~~~~~~~~tiW~ 104 (454)
+.|||+.|.-.-.++.+....|.++++-.|.++.....+++.+..+.|.+--.-.-..|..+ +.|+||.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~V~AP-----maGtf~r 210 (274)
T PLN02983 142 PQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHPPLKSP-----MAGTFYR 210 (274)
T ss_pred CCCCCCCceEEecCCCcccCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCcCCCCeEeCC-----cCeEEEe
No 55
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=21.12 E-value=5.4e+02 Score=26.93 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=6.2
Q ss_pred hhhhHhHHHHHHHHH
Q psy4168 426 KDLFMLWAPFCHDFK 440 (454)
Q Consensus 426 ~eFF~~~~~F~~~f~ 440 (454)
.+||..-..++.+++
T Consensus 295 qqfL~lQedL~~DL~ 309 (426)
T smart00806 295 QQFLTLQEDLIADLK 309 (426)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 56
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=20.34 E-value=34 Score=30.65 Aligned_cols=10 Identities=10% Similarity=0.212 Sum_probs=4.3
Q ss_pred CCHHHHHHHH
Q psy4168 183 VSLEALQQIY 192 (454)
Q Consensus 183 l~~e~l~~L~ 192 (454)
|+...++.|.
T Consensus 86 Ls~~v~~~L~ 95 (157)
T PF07304_consen 86 LSKPVVDKLH 95 (157)
T ss_dssp S-HHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 5554444443
No 57
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=20.27 E-value=2.7e+02 Score=32.52 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=4.6
Q ss_pred CChHHHHHHH
Q psy4168 166 IEFSEIESAI 175 (454)
Q Consensus 166 ~~~~~i~~ai 175 (454)
+++.+|..++
T Consensus 237 l~f~ef~~ay 246 (1228)
T PRK12270 237 MDFAQFWAAY 246 (1228)
T ss_pred CCHHHHHHHH
Confidence 4455544443
Done!