Query psy4168
Match_columns 454
No_of_seqs 269 out of 1407
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 18:37:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3obv_E Protein diaphanous homo 100.0 4E-72 1.4E-76 580.9 28.8 358 79-453 8-390 (457)
2 4eah_A Formin-like protein 3, 100.0 1.2E-70 4E-75 562.4 34.3 356 79-453 17-387 (402)
3 2j1d_G DAAM1, disheveled-assoc 100.0 4.7E-70 1.6E-74 571.3 32.0 352 79-448 13-397 (483)
4 1ux5_A BNI1 protein; structura 100.0 5.6E-67 1.9E-71 539.1 17.3 354 79-454 7-406 (411)
5 1v9d_A Diaphanous protein homo 100.0 8.9E-66 3E-70 517.2 24.7 300 140-453 4-319 (340)
6 1pk8_A RAT synapsin I; ATP bin 49.0 3.6 0.00012 41.5 0.0 7 1-7 2-8 (422)
7 3v86_A De novo design helix; c 32.1 73 0.0025 18.1 3.9 21 357-377 4-24 (27)
8 2h8h_A Proto-oncogene tyrosine 25.5 15 0.0005 37.9 0.0 7 115-121 158-164 (535)
9 1deq_A Fibrinogen (alpha chain 23.8 1.6E+02 0.0054 28.9 6.9 26 349-374 137-162 (390)
10 3twe_A Alpha4H; unknown functi 23.8 1.1E+02 0.0037 17.4 3.7 22 355-376 3-24 (27)
No 1
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=100.00 E-value=4e-72 Score=580.93 Aligned_cols=358 Identities=24% Similarity=0.429 Sum_probs=312.6
Q ss_pred CccCCccceeccCCCCCCCCCCccccccccCCCC---ChHHHHHHHhhhhhccCccc------chhhccccccccccccc
Q psy4168 79 HVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPIN---NLEEFTELFSRQVTAQRPVT------RKRQQKSSKVQNVARLI 149 (454)
Q Consensus 79 ~~lk~l~W~kI~~~~~~~~~~~tiW~~l~~~~l~---~~~e~e~lF~~~~~~~~~~~------~~~~~~~~k~~~~~~vl 149 (454)
.+||++||++|..... ..+|||.++++.++. .++++|.+|+.+....++.. .++...++|++.+ +||
T Consensus 8 ~~mK~l~W~ki~~~~~---~~~t~W~~~~e~~~~~~~~f~~Le~~F~~~~~~~~~~k~~~~~~~~~~~~~kk~~~v-~lL 83 (457)
T 3obv_E 8 VQLRRPNWSKFVAEDL---SQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQKKKVKEL-KVL 83 (457)
T ss_dssp SCBCCCCCCEECTTTT---CSSSSGGGCCGGGGCCTTHHHHHHHHTBCC-----------------------CCCC-SSS
T ss_pred CCCcCCCceeCCcccc---CCCceeeeCccccccChhHHHHHHHHhcccccccccccccccccccccccccCCcee-Eec
Confidence 5899999999987653 368999999988874 35778999998754322210 0111224456667 999
Q ss_pred ccccchhhhhhhccCCCChHHHHHHHhcCCcCCCCHHHHHHHHhccCCHHHHHHHHHhhccCCCCCCCchHHHHHHHhcC
Q psy4168 150 DSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADI 229 (454)
Q Consensus 150 d~kra~ni~I~L~~lk~~~~~i~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~L~~~e~f~~~l~~i 229 (454)
|+||||||+|+|+++++++++|++||++||...|+.|.|+.|++++||+||++.|++|.++. ..|+++|||++.|++|
T Consensus 84 D~kraqNi~I~L~~lk~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~d~--~~L~~~EqF~~~l~~I 161 (457)
T 3obv_E 84 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEY--DDLAESEQFGVVMGTV 161 (457)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHCCCHHHHHHHHTTTTSG--GGSCHHHHHHHHHTSS
T ss_pred CHHHHhHHHHHHhccCCCHHHHHHHHHhCCcccCCHHHHHHHHHhCCCHHHHHHHHHhccCh--hhcCHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999998764 3799999999999999
Q ss_pred CChHhhHHHhhhHhhhHHHHHHHHHhHHHHHHHHHHHHcChhHHHHHHHHHHhhhhccCCCCCCCCcceeccCccccccc
Q psy4168 230 PHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKD 309 (454)
Q Consensus 230 p~~~~Rl~~~~f~~~f~~~~~~i~~~l~~l~~a~~~l~~S~~l~~lL~~iL~iGN~lN~g~~~rg~a~GF~L~sL~kL~~ 309 (454)
|++..||+||+|+.+|++.+.+|.+.|..+..||++|++|..|+.||++||++|||||+|+ .+|+|+||+|+||.||.+
T Consensus 162 p~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g~-~~g~A~GFkL~sL~KL~d 240 (457)
T 3obv_E 162 PRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGS-RNAGAFGFNISFLCKLRD 240 (457)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTTS-TTCSCSCBCGGGHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhhccCC-cCCCeeeEehHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998 589999999999999999
Q ss_pred ccCCCCCccHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q psy4168 310 VRSKDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHME 389 (454)
Q Consensus 310 ~Ks~d~k~tLLh~lv~~~~~~~~~~~~~~l~~~el~~v~~A~~v~~~~l~~~~~~L~~~l~~~~~~~~~~~~~s~~~~~~ 389 (454)
||++|+++|||||||+++.+++|+++.+ .+||.+|.+|++||+++|..++++|.+++..++.+++.... ..+..+
T Consensus 241 ~Ks~d~k~TLLh~l~~~v~~~~p~l~~f---~~eL~~v~~Aakvs~~~l~~dl~~L~~~l~~v~~~l~~~~~--~~~~~d 315 (457)
T 3obv_E 241 TKSADQKMTLLHFLAELCENDHPEVLKF---PDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPA--ATDEKD 315 (457)
T ss_dssp CBCSSTTCBHHHHHHHHHHHHCGGGGGH---HHHCTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSCCC--CSSTTC
T ss_pred hhcCCCCccHHHHHHHHHHHcCccccCC---hhhhhhHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccC--CcchhH
Confidence 9999999999999999999999987764 37899999999999999999999999999999998875432 124457
Q ss_pred chHHhHHHHHh----------------hhhhHHHHHhhcccCCCCCCCCCChhhhhHhHHHHHHHHHHHHHHHHHHHHhc
Q psy4168 390 PFRTKMESCVK----------------TGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKKEQDRIIKT 453 (454)
Q Consensus 390 ~f~~~~~~fl~----------------~~~f~~~~~~fge~~~~~~~~~~~~~eFF~~~~~F~~~f~~a~k~~~~~~~k~ 453 (454)
.|..+|..|+. .+.|.+++.|||||++. +++++||++|.+|+..|++|+++|+++.++|
T Consensus 316 ~f~~~m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp~~-----~~~~eFF~~~~~F~~~fkkA~~eN~~r~e~e 390 (457)
T 3obv_E 316 KFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKK-----LSVEEFFMDLHNFRNMFLQAVKENQKRRETE 390 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999986 45799999999999874 7899999999999999999999999887654
No 2
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=100.00 E-value=1.2e-70 Score=562.36 Aligned_cols=356 Identities=23% Similarity=0.394 Sum_probs=305.4
Q ss_pred CccCCccceeccCCCCCCCCCCccccccccCCC---CChHHHHHHHhhhhhccC-ccc-chhhccccccccccccccccc
Q psy4168 79 HVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPI---NNLEEFTELFSRQVTAQR-PVT-RKRQQKSSKVQNVARLIDSKR 153 (454)
Q Consensus 79 ~~lk~l~W~kI~~~~~~~~~~~tiW~~l~~~~l---~~~~e~e~lF~~~~~~~~-~~~-~~~~~~~~k~~~~~~vld~kr 153 (454)
.+||++||++|+... ..+|||+++++..+ .|+++||++|+.+..... ... .+.....++++++ +|||+||
T Consensus 17 ~kmk~l~W~kl~~~~----i~~Tiw~~~~~~~~~~~ld~~~~E~lF~~k~~~~~~~~~~~k~k~~~k~~~~v-~lLd~kr 91 (402)
T 4eah_A 17 FRLPVFNWTALKPNQ----INGTVFSELDDEKILEDLDLDRFEELFKTKAQGPALDLICSKNKTAQKAASKV-TLLEANR 91 (402)
T ss_dssp SCCCCCCCCEECHHH----HTTSTTSSCCTTSCSSTTTHHHHHHHSCCCC--------------------CB-CSSCHHH
T ss_pred CCCCCcCceeCChHh----ccCccccCCchhhhccccCHHHHHHHHhhcccCCccccchhcccccccCCCce-eeCCHHH
Confidence 589999999998765 47899999988765 368899999997643211 000 0111112334556 9999999
Q ss_pred chhhhhhhccCCCChHHHHHHHhcCCcCCCCHHHHHHHHhccCCHHHHHHHHHhhccC-CCCCCCchHHHHHHHhcCCCh
Q psy4168 154 SQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASN-SDLQLDKPEQFLADLADIPHF 232 (454)
Q Consensus 154 a~ni~I~L~~lk~~~~~i~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~-~~~~L~~~e~f~~~l~~ip~~ 232 (454)
||||+|+|+++++++++|++||++||...|+.|.|+.|++++||+||++.|++|.++. +...|+++|||++.|+.||++
T Consensus 92 a~Ni~I~L~~l~~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~~L~~~EqF~~~l~~ip~~ 171 (402)
T 4eah_A 92 AKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQYERERQPLEELAAEDRFMLLFSKVERL 171 (402)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHTTSCSCCCHHHHHHHHHTCCCHHHHHHHHHHHHSSCCTTTBCHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHcCCcccCCHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhccHHHHHHHHHHccccH
Confidence 9999999999999999999999999999999999999999999999999999998864 335799999999999999999
Q ss_pred HhhHHHhhhHhhhHHHHHHHHHhHHHHHHHHHHHHcChhHHHHHHHHHHhhhhccCCCCCCCCcceeccCcccccccccC
Q psy4168 233 SERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRS 312 (454)
Q Consensus 233 ~~Rl~~~~f~~~f~~~~~~i~~~l~~l~~a~~~l~~S~~l~~lL~~iL~iGN~lN~g~~~rg~a~GF~L~sL~kL~~~Ks 312 (454)
..||+||.|+.+|++.+.+|.+.|..+..||++|++|..|+++|++||++|||||+| .||+|+||+|+||.||.|||+
T Consensus 172 ~~Rl~~l~f~~~f~~~~~~l~~~l~~v~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g--~rg~A~GFkL~sL~KL~d~Ks 249 (402)
T 4eah_A 172 TQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMNSS--KRGAVYGFKLQSLDLLLDTKS 249 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCS--SSCCCSCBCGGGGGSSSSSBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhccCC--CCCccceeeHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999998 489999999999999999999
Q ss_pred CCCCccHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchH
Q psy4168 313 KDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHMEPFR 392 (454)
Q Consensus 313 ~d~k~tLLh~lv~~~~~~~~~~~~~~l~~~el~~v~~A~~v~~~~l~~~~~~L~~~l~~~~~~~~~~~~~s~~~~~~~f~ 392 (454)
+|+++|||||||+++.+++|+++++ .+||.+|.+|++|++++|..++++|++++..+++++.. + ....+..|.
T Consensus 250 ~d~k~TLLh~l~~~~~~~~p~l~~f---~~eL~~v~~Aa~v~~~~l~~d~~~L~~~l~~~~~e~~~--~--d~~~l~~Fl 322 (402)
T 4eah_A 250 TDRKMTLLHFIALTVKEKYPELANF---WQELHFVEKAAAVSLENVLLDVKELGRGMELIRRECSI--H--DNSVLRNFL 322 (402)
T ss_dssp TTSSSBHHHHHHHHHHHHCGGGGTC---STTCCSHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHT--T--CCTTTHHHH
T ss_pred CCCCccHHHHHHHHHHhhhHHHHHH---hhhhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcc--c--chHHHHHHH
Confidence 9999999999999999999987765 47999999999999999999999999999999887652 1 123445565
Q ss_pred HhHHHHHh---------hhhhHHHHHhhcccCCCCCCCCCChhhhhHhHHHHHHHHHHHHHHHHHHHHhc
Q psy4168 393 TKMESCVK---------TGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKKEQDRIIKT 453 (454)
Q Consensus 393 ~~~~~fl~---------~~~f~~~~~~fge~~~~~~~~~~~~~eFF~~~~~F~~~f~~a~k~~~~~~~k~ 453 (454)
.....-++ .+.|.+++.||||+++. +++++||++|.+|+..|++|+++|.+|.++|
T Consensus 323 ~~a~~~~~~L~~~~~~~~~~~~~l~~yFgedpk~-----~~~~~fF~~~~~F~~~fk~A~~en~~r~~~e 387 (402)
T 4eah_A 323 STNEGKLDKLQRDAKTAEEAYNAVVRYFGESPKT-----TPPSVFFPVFVRFIRSYKEAEQENEARKKQE 387 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433322 56899999999999875 6899999999999999999999999998876
No 3
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=100.00 E-value=4.7e-70 Score=571.29 Aligned_cols=352 Identities=25% Similarity=0.468 Sum_probs=306.9
Q ss_pred CccCCccceeccCCCCCCCCCCccccccccCCC---CChHHHHHHHhhhhhccC-----cccchh-------hccccccc
Q psy4168 79 HVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPI---NNLEEFTELFSRQVTAQR-----PVTRKR-------QQKSSKVQ 143 (454)
Q Consensus 79 ~~lk~l~W~kI~~~~~~~~~~~tiW~~l~~~~l---~~~~e~e~lF~~~~~~~~-----~~~~~~-------~~~~~k~~ 143 (454)
.+||+|||++|.... ..+|||+++++..+ .|+++||++|+.+..... +..++. ....++.+
T Consensus 13 ~klK~l~W~ki~~~~----~~~TiW~~~~~~~~~~~ld~~~lE~lF~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~kk~~ 88 (483)
T 2j1d_G 13 NALKSFNWSKLPENK----LEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKLKVK 88 (483)
T ss_dssp SCBCCCCCCCCCGGG----CSSSGGGGCCGGGHHHHSCHHHHHHHTBSBC-----------------------------C
T ss_pred CCCCCcCceECCccc----ccCCccCcCCchhhccccCHHHHHHHHhhhccccccccccccccccccccccccccccCCC
Confidence 579999999997654 47899999998753 368899999997643321 000000 01123555
Q ss_pred ccccccccccchhhhhhhccCCCChHHHHHHHhcCCc-CCCCHHHHHHHHhccCCHHHHHHHHHhhccCCCCCCCchHHH
Q psy4168 144 NVARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDA-SVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQF 222 (454)
Q Consensus 144 ~~~~vld~kra~ni~I~L~~lk~~~~~i~~ai~~~d~-~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~L~~~e~f 222 (454)
++ +|||+||||||+|+|++|++++++|++||++||. ..|+.|.|+.|++++||.||++.|++|.++. ..|+++|||
T Consensus 89 ~v-~lLD~kRaqNi~I~L~~lk~~~~ei~~aIl~~D~~~~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~--~~L~~aEqF 165 (483)
T 2j1d_G 89 EL-SVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHEL--DRMAKADRF 165 (483)
T ss_dssp CB-CCSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTSTTCCCCHHHHHHHHHSCCCHHHHHHHHTTTTCG--GGBCHHHHH
T ss_pred cc-eeCCHHHHHHHHHHHhcCCCCHHHHHHHHHccCccccCCHHHHHHHHHhCCCHHHHHHHHHhccCh--hhcCHHHHH
Confidence 66 9999999999999999999999999999999999 9999999999999999999999999998753 479999999
Q ss_pred HHHHhcCCChHhhHHHhhhHhhhHHHHHHHHHhHHHHHHHHHHHHcChhHHHHHHHHHHhhhhccCCCCCCCCcceeccC
Q psy4168 223 LADLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLE 302 (454)
Q Consensus 223 ~~~l~~ip~~~~Rl~~~~f~~~f~~~~~~i~~~l~~l~~a~~~l~~S~~l~~lL~~iL~iGN~lN~g~~~rg~a~GF~L~ 302 (454)
++.|+.||+|..||+||+|+.+|++.+.+|.+.|..+..||++|++|..|+.||++||++|||||+| .||+|+||+|+
T Consensus 166 l~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~IL~~GN~mN~g--~rg~A~GFkL~ 243 (483)
T 2j1d_G 166 LFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG--QRGNAYGFKIS 243 (483)
T ss_dssp HHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCS--SSCCCSCCCGG
T ss_pred HHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhccC--CCCCceeeehH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 48999999999
Q ss_pred cccccccccCC-CCCccHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4168 303 ILPKLKDVRSK-DNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQ 381 (454)
Q Consensus 303 sL~kL~~~Ks~-d~k~tLLh~lv~~~~~~~~~~~~~~l~~~el~~v~~A~~v~~~~l~~~~~~L~~~l~~~~~~~~~~~~ 381 (454)
||.||.|||++ |+++|||||||+++.+++|+++++ .+||.+|.+|++|++++|..++++|.+++..++.+++....
T Consensus 244 sL~KL~d~Ks~~d~k~TLLhylv~~v~~~~p~l~~f---~~eL~~v~~Askv~~~~l~~~~~~L~~~l~~v~~~l~~~~~ 320 (483)
T 2j1d_G 244 SLNKIADTKSSIDKNITLLHYLITIVENKYPSVLNL---NEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKS 320 (483)
T ss_dssp GGGGGGGSBCSSCTTCBHHHHHHHHHHHHCGGGGGH---HHHTTTHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhhcccCCCCCccHHHHHHHHHHHhCchhhch---HHHHhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999995 999999999999999999987754 36899999999999999999999999999999999886533
Q ss_pred cCCCCCCcchHHhHHHHHh----------------hhhhHHHHHhhcccCCCCCCCCCChhhhhHhHHHHHHHHHHHHHH
Q psy4168 382 ESKPDHMEPFRTKMESCVK----------------TGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKK 445 (454)
Q Consensus 382 ~s~~~~~~~f~~~~~~fl~----------------~~~f~~~~~~fge~~~~~~~~~~~~~eFF~~~~~F~~~f~~a~k~ 445 (454)
.. .+..+.|...|..|+. .+.|.+++.||||+++. +++++||++|.+|+..|++|+++
T Consensus 321 ~~-~~~~d~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFGEd~~~-----~~~~~fF~~~~~F~~~f~~A~~e 394 (483)
T 2j1d_G 321 QP-PQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGK-----IQPDEFFGIFDQFLQAVSEAKQE 394 (483)
T ss_dssp SC-CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTS-----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cC-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2355789999999986 56799999999999864 78999999999999999999999
Q ss_pred HHH
Q psy4168 446 EQD 448 (454)
Q Consensus 446 ~~~ 448 (454)
|.+
T Consensus 395 n~~ 397 (483)
T 2j1d_G 395 NEN 397 (483)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 4
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=100.00 E-value=5.6e-67 Score=539.09 Aligned_cols=354 Identities=17% Similarity=0.279 Sum_probs=296.5
Q ss_pred CccCCccceeccCCCCCCCCCCccccccccCCC-------CChHHHHHHHhhhhhccCcccchhhccccccccccccccc
Q psy4168 79 HVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPI-------NNLEEFTELFSRQVTAQRPVTRKRQQKSSKVQNVARLIDS 151 (454)
Q Consensus 79 ~~lk~l~W~kI~~~~~~~~~~~tiW~~l~~~~l-------~~~~e~e~lF~~~~~~~~~~~~~~~~~~~k~~~~~~vld~ 151 (454)
++||+|||++|.. ..+|||+++++.++ .++++||++|+.+..+... ..++++.+++ +|||+
T Consensus 7 ~klK~l~W~ki~~------~~~tiW~~~~~~~~~~~l~~~~d~~~lE~lF~~~~~~~~~-----~~k~~~~~~v-~lLd~ 74 (411)
T 1ux5_A 7 KKLKQLHWEKLDC------TDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLA-----SKRKEDLQKI-TFLSR 74 (411)
T ss_dssp SCBCCCCCCCCSS------CCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHH-----HHHHHTTTSB-CCSCH
T ss_pred CCCCCcCcccCCC------CCCCcCcCCccHHHHHhhhhhchHHHHHHHhccccccccc-----ccccCCCCee-eecCh
Confidence 5799999999986 37999999987654 2678999999976532111 1112344556 99999
Q ss_pred ccchhhhhhhccC-CCChHHHHHHHhcCCcCCCCHHH-HHH------------HH-hccCCHHHHHHH---HHhhc-cCC
Q psy4168 152 KRSQNVGILAQSL-HIEFSEIESAIFNMDASVVSLEA-LQQ------------IY-DVRATDEEINLI---RAHLA-SNS 212 (454)
Q Consensus 152 kra~ni~I~L~~l-k~~~~~i~~ai~~~d~~~l~~e~-l~~------------L~-~~~Pt~eE~~~l---~~~~~-~~~ 212 (454)
||||||+|+|+++ ++++++|++||++||...|+.+. ++. |+ +++|+.+|.+.+ .++.. +++
T Consensus 75 kraqNi~I~L~~~~~~~~~ei~~ai~~~D~~~L~~~~lie~L~~~~~~ei~~~L~~~~~P~~~e~e~l~~~~~~~~~~~d 154 (411)
T 1ux5_A 75 DISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKD 154 (411)
T ss_dssp HHHHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSSC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhcChhhcCHHHHHHHhchhHHHhhHHHHHHhcCCCchhHHHHHHHHHhhhccCC
Confidence 9999999999998 89999999999999999998443 333 34 688987776522 22221 122
Q ss_pred CCCCCchHHHHHHHh-cC-CChHhhHHHhhhHhhhHHHHHHHHHhHHHHHHHHHHHHcChhHHHHHHHHHHhhhhccCCC
Q psy4168 213 DLQLDKPEQFLADLA-DI-PHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGN 290 (454)
Q Consensus 213 ~~~L~~~e~f~~~l~-~i-p~~~~Rl~~~~f~~~f~~~~~~i~~~l~~l~~a~~~l~~S~~l~~lL~~iL~iGN~lN~g~ 290 (454)
...|+++|||++.++ .| |++.+||+||+|+.+|++.+.+|.+.+..+..||++|++|..|+++|++||++|||||+|+
T Consensus 155 ~~~L~~~eqf~~~l~~~i~~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~ 234 (411)
T 1ux5_A 155 PNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTS 234 (411)
T ss_dssp STTBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGG
T ss_pred hhhCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhCcccCCC
Confidence 347999999999976 78 5689999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCCcceeccCcccccccccCCCCCccHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHhcccHHHHHHHHHHHHHHHH
Q psy4168 291 RLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLD 370 (454)
Q Consensus 291 ~~rg~a~GF~L~sL~kL~~~Ks~d~k~tLLh~lv~~~~~~~~~~~~~~l~~~el~~v~~A~~v~~~~l~~~~~~L~~~l~ 370 (454)
+ +|+||+|+||.||.|||++|+++|||||||+++.+++|+++++ .+||.+|.+|++|++++|.+++++|.+++.
T Consensus 235 --~-~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~~p~l~~f---~~eL~~v~~Aakv~~~~l~~d~~~L~~~l~ 308 (411)
T 1ux5_A 235 --K-QAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDF---LSELEPVLDVVKVSIEQLVNDCKDFSQSIV 308 (411)
T ss_dssp --G-CCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHHCGGGGGH---HHHTHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred --C-CeeEeehhHHHHHHHhhCCCCCccHHHHHHHHHHHhCcccccc---cchhhhHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 2 7999999999999999999999999999999999999988764 378999999999999999999999999999
Q ss_pred HHHHHHHHhhhc--CCCCCCcchHHhHHHHHh----------------hhhhHHHHHhhcccCCCCCCCCCChhhhhHhH
Q psy4168 371 AVTISMNKVVQE--SKPDHMEPFRTKMESCVK----------------TGKFKSVLKFYQYIPKGIPESDVTPKDLFMLW 432 (454)
Q Consensus 371 ~~~~~~~~~~~~--s~~~~~~~f~~~~~~fl~----------------~~~f~~~~~~fge~~~~~~~~~~~~~eFF~~~ 432 (454)
.++++++...-+ +..+..+.|...|..|+. .+.|.+++.||||+++. .+++++||++|
T Consensus 309 ~v~~~l~~~~~s~~~~~~~~d~f~~~~~~fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~~----~~~~~~fF~~~ 384 (411)
T 1ux5_A 309 NVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGD----KFAKISFFKKF 384 (411)
T ss_dssp HHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSC----HHHHHHHHHHH
T ss_pred HHHHHHHhccCCcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CCCHHHHHHHH
Confidence 999988742111 111234689999999975 46799999999999862 36899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q psy4168 433 APFCHDFKDFWKKEQDRIIKTK 454 (454)
Q Consensus 433 ~~F~~~f~~a~k~~~~~~~k~~ 454 (454)
.+|+..|++|+++|.++.++|+
T Consensus 385 ~~F~~~f~~a~~en~~~~e~~~ 406 (411)
T 1ux5_A 385 ADFINEYKKAQAQNLAAEEEER 406 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988763
No 5
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=100.00 E-value=8.9e-66 Score=517.19 Aligned_cols=300 Identities=25% Similarity=0.455 Sum_probs=253.3
Q ss_pred ccccccccccccccchhhhhhhccCCCChHHHHHHHhcCCcCCCCHHHHHHHHhccCCHHHHHHHHHhhccCCCCCCCch
Q psy4168 140 SKVQNVARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKP 219 (454)
Q Consensus 140 ~k~~~~~~vld~kra~ni~I~L~~lk~~~~~i~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~L~~~ 219 (454)
+|++++ +|||+||||||+|+|+++++++++|++||++||...|+.|.|+.|++++||+||++.|++|.++.. .|+++
T Consensus 4 kk~~~i-~vLD~kraqNi~I~L~~~k~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~--~L~~~ 80 (340)
T 1v9d_A 4 KKVKEL-KVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYD--DLAES 80 (340)
T ss_dssp --CCCC-SSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHHHHHHHTCGGGGG--GSCHH
T ss_pred CCCCee-eecCHHHHhHHHHHHhhcCCCHHHHHHHHHhCCcccCCHHHHHHHHccCCCHHHHHHHHHhhCChh--hcCHH
Confidence 355666 999999999999999999999999999999999999999999999999999999999999987643 79999
Q ss_pred HHHHHHHhcCCChHhhHHHhhhHhhhHHHHHHHHHhHHHHHHHHHHHHcChhHHHHHHHHHHhhhhccCCCCCCCCccee
Q psy4168 220 EQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGF 299 (454)
Q Consensus 220 e~f~~~l~~ip~~~~Rl~~~~f~~~f~~~~~~i~~~l~~l~~a~~~l~~S~~l~~lL~~iL~iGN~lN~g~~~rg~a~GF 299 (454)
|||++.|+.||++..||+||.|+.+|++.+.++.+.+..+..||++|++|..|+.+|++||++|||||+|+ .+|+|+||
T Consensus 81 EqF~~~l~~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~-~~g~A~GF 159 (340)
T 1v9d_A 81 EQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGS-RNAGAFGF 159 (340)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC-----------------------
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHcCcCCCCC-CCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 57999999
Q ss_pred ccCcccccccccCCCCCccHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4168 300 GLEILPKLKDVRSKDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKV 379 (454)
Q Consensus 300 ~L~sL~kL~~~Ks~d~k~tLLh~lv~~~~~~~~~~~~~~l~~~el~~v~~A~~v~~~~l~~~~~~L~~~l~~~~~~~~~~ 379 (454)
+|+||.||.|||++|+++|||||||+++.+++|+++++ .+||.+|.+|++||+++|..+++.|.+++..++..++.+
T Consensus 160 kL~sL~KL~d~Ks~d~k~TLLh~lv~~~~~~~p~l~~f---~~eL~~v~~Askvs~~~l~~~l~~l~~~~~~~~~~l~~~ 236 (340)
T 1v9d_A 160 NISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKF---PDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNF 236 (340)
T ss_dssp --CCHHHHHHSBCSSTTSBHHHHHHHHHHHSCCTTSSG---GGGCTTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ehHHHHhhhhhcCCCCCccHHHHHHHHHHHhCchhccc---hhHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998765 378999999999999999999999999999999887754
Q ss_pred hhcCCCCCCcchHHhHHHHHh----------------hhhhHHHHHhhcccCCCCCCCCCChhhhhHhHHHHHHHHHHHH
Q psy4168 380 VQESKPDHMEPFRTKMESCVK----------------TGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFW 443 (454)
Q Consensus 380 ~~~s~~~~~~~f~~~~~~fl~----------------~~~f~~~~~~fge~~~~~~~~~~~~~eFF~~~~~F~~~f~~a~ 443 (454)
.. ..+..+.|..+|..|+. .+.|.+++.||||+++. +++++||++|.+|+..|++|+
T Consensus 237 ~~--~~~~~d~f~~~m~~Fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~~-----~~~~~fF~~~~~F~~~f~~a~ 309 (340)
T 1v9d_A 237 PA--ATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKK-----LSVEEFFMDLHNFRNMFLQAV 309 (340)
T ss_dssp CC--CSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT-----SCHHHHHHHHHHHHHHHHHHH
T ss_pred cc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CCHHHHHHHHHHHHHHHHHHH
Confidence 22 12345789999999986 35689999999999874 789999999999999999999
Q ss_pred HHHHHHHHhc
Q psy4168 444 KKEQDRIIKT 453 (454)
Q Consensus 444 k~~~~~~~k~ 453 (454)
++|+++.++|
T Consensus 310 ~en~~r~e~e 319 (340)
T 1v9d_A 310 KENQKRRETE 319 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877655
No 6
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=48.95 E-value=3.6 Score=41.47 Aligned_cols=7 Identities=29% Similarity=0.819 Sum_probs=0.0
Q ss_pred ChhhhHH
Q psy4168 1 MEYMDKR 7 (454)
Q Consensus 1 ~~~~~~~ 7 (454)
|.||..|
T Consensus 2 mn~l~rr 8 (422)
T 1pk8_A 2 SNYLRRR 8 (422)
T ss_dssp -------
T ss_pred cchhhhh
Confidence 6666433
No 7
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=32.14 E-value=73 Score=18.13 Aligned_cols=21 Identities=10% Similarity=0.270 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4168 357 DIHSQLSTLAKKLDAVTISMN 377 (454)
Q Consensus 357 ~l~~~~~~L~~~l~~~~~~~~ 377 (454)
+++.++.+|+.++..++++++
T Consensus 4 qlkdevgelkgevralkdevk 24 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHh
Confidence 567778888888888877765
No 8
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=25.49 E-value=15 Score=37.88 Aligned_cols=7 Identities=29% Similarity=0.358 Sum_probs=2.9
Q ss_pred HHHHHHH
Q psy4168 115 EEFTELF 121 (454)
Q Consensus 115 ~e~e~lF 121 (454)
++.|++-
T Consensus 158 ~~ae~~L 164 (535)
T 2h8h_A 158 RESERLL 164 (535)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3444443
No 9
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.84 E-value=1.6e+02 Score=28.90 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=17.8
Q ss_pred HHhcccHHHHHHHHHHHHHHHHHHHH
Q psy4168 349 RAASVVFDDIHSQLSTLAKKLDAVTI 374 (454)
Q Consensus 349 ~A~~v~~~~l~~~~~~L~~~l~~~~~ 374 (454)
++-+.+++++..+|+.|+.+++.|..
T Consensus 137 r~Lq~~l~~q~~kiqRLE~~Id~c~~ 162 (390)
T 1deq_A 137 NLLQKNVRDQLVDMKRLEVDIDIKIR 162 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556777777778888877765543
No 10
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.79 E-value=1.1e+02 Score=17.40 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4168 355 FDDIHSQLSTLAKKLDAVTISM 376 (454)
Q Consensus 355 ~~~l~~~~~~L~~~l~~~~~~~ 376 (454)
-+++..++..|...+..+++.+
T Consensus 3 adelykeledlqerlrklrkkl 24 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777777777766554
Done!