RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4168
(454 letters)
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 269 bits (689), Expect = 8e-86
Identities = 87/396 (21%), Positives = 170/396 (42%), Gaps = 40/396 (10%)
Query: 83 PLYWTRLIVSPEIPSDTTPLWKELEEVPINN---LEEFTELFSRQVTAQRP-----VTRK 134
W++ V+ ++ D W +++E N + T FS Q + +
Sbjct: 12 RPNWSK-FVAEDLSQDC--FWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEE 68
Query: 135 RQQKSSKVQNVARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDV 194
++ K +++DSK +QN+ I S + + EI++ I ++ +V++ +Q +
Sbjct: 69 KKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQ 128
Query: 195 RATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDS 254
E++ ++ DL + EQF + +P R+ +F+ FS+ + I
Sbjct: 129 MPEPEQLKMLSELKEEYDDL--AESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKP 186
Query: 255 KLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKD 314
++ ++ + CE L KSE+ ++ + L +GN+MN G+R A GF + L KL+D +S D
Sbjct: 187 EIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSR-NAGAFGFNISFLCKLRDTKSAD 245
Query: 315 NSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTI 374
+TLLHF+ + L E V++A+ V +++ L + K++ V
Sbjct: 246 QKMTLLHFLAELCENDHPEVLKFP---DELAHVEKASRVSAENLQKSLDQMKKQIADVER 302
Query: 375 SMNKVVQESKPDHMEPFRTKMESCVKT----------------GKFKSVLKFYQYIPKGI 418
+ + D + F KM S VK +K + ++ + PK
Sbjct: 303 DVQN--FPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPK-- 358
Query: 419 PESDVTPKDLFMLWAPFCHDFKDFWKKEQDRIIKTK 454
++ ++ FM F + F K+ Q R +
Sbjct: 359 ---KLSVEEFFMDLHNFRNMFLQAVKENQKRRETEE 391
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 255 bits (654), Expect = 5e-82
Identities = 78/330 (23%), Positives = 147/330 (44%), Gaps = 29/330 (8%)
Query: 139 SSKVQNVARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATD 198
S K +++DSK +QN+ I S + + EI++ I ++ +V++ +Q +
Sbjct: 2 SKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEP 61
Query: 199 EEINLIRAHLASNSDLQLDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNN 258
E++ ++ DL + EQF + +P R+ +F+ FS+ + I ++ +
Sbjct: 62 EQLKMLSELKEEYDDL--AESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVS 119
Query: 259 IKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKDNSVT 318
+ + CE L KSE+ ++ + L +GN+MN G+R A GF + L KL+D +S D +T
Sbjct: 120 VTAACEELRKSENFSSLLELTLLVGNYMNAGSR-NAGAFGFNISFLCKLRDTKSADQKMT 178
Query: 319 LLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNK 378
LLHF+ + L E V++A+ V +++ L + K++ V +
Sbjct: 179 LLHFLAELCENDHPEVLKFP---DELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQN 235
Query: 379 VVQESKPDHMEPFRTKMESCVKT----------------GKFKSVLKFYQYIPKGIPESD 422
+ D + F KM S VK +K + ++ + PK
Sbjct: 236 --FPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPK-----K 288
Query: 423 VTPKDLFMLWAPFCHDFKDFWKKEQDRIIK 452
++ ++ FM F + F K+ Q R
Sbjct: 289 LSVEEFFMDLHNFRNMFLQAVKENQKRRET 318
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 247 bits (631), Expect = 5e-77
Identities = 92/423 (21%), Positives = 180/423 (42%), Gaps = 52/423 (12%)
Query: 64 MGTPPPPPPMMGTTPHVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPIN---NLEEFTEL 120
+ P + L W++L PE + T +W E+++ + +LE+
Sbjct: 1 LALKKKSIP---QPTNALKSFNWSKL---PENKLEGT-VWTEIDDTKVFKILDLEDLERT 53
Query: 121 FSRQVTAQRPVTRKRQQK-----------SSKVQNVARLIDSKRSQNVGILAQSLHIEFS 169
FS Q ++ S +ID +R+QN IL L +
Sbjct: 54 FSAYQRQQDFFVNSNSKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSND 113
Query: 170 EIESAIFNMDASV-VSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLAD 228
EI+ AI MD + + L+Q+ +I+L+ H + ++ K ++FL +++
Sbjct: 114 EIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEH--KHELDRMAKADRFLFEMSR 171
Query: 229 IPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNG 288
I H+ +R+ F+ F++ +A + K+ I+S E + +S LK+++ ++L+ GN+MN
Sbjct: 172 INHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNK 231
Query: 289 GNRLRGQADGFGLEILPKLKDVRS-KDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDV 347
G RG A GF + L K+ D +S D ++TLLH+++ + LN + E D+
Sbjct: 232 GQ--RGNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVENKYPSVLNLN---EELRDI 286
Query: 348 DRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHMEPFRTKMESCVKT------ 401
+AA V ++ ++STL L AV + + + P + F + + +
Sbjct: 287 PQAAKVNMTELDKEISTLRSGLKAVETEL-EYQKSQPPQPGDKFVSVVSQFITVASFSFS 345
Query: 402 ----------GKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKKEQDRII 451
F +K + G + P + F ++ F + ++ ++
Sbjct: 346 DVEDLLAEAKDLFTKAVKHF-----GEEAGKIQPDEFFGIFDQFLQAVSEAKQENENMRK 400
Query: 452 KTK 454
K +
Sbjct: 401 KKE 403
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 239 bits (611), Expect = 1e-74
Identities = 61/418 (14%), Positives = 140/418 (33%), Gaps = 68/418 (16%)
Query: 83 PLYWTRLIVSPEIPSDTTPLWKELEEVPINN-------LEEFTELFSRQVTAQRPVTRKR 135
L+W +L + ++ +W + + L + + F+ + KR
Sbjct: 11 QLHWEKL----DCTDNS--IWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLA--SKR 62
Query: 136 QQKSSKVQNVARLIDSKRSQNVGI-LAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDV 194
++ K+ + SQ GI L + +++ I N D + ++ +
Sbjct: 63 KEDLQKIT----FLSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSK 118
Query: 195 RA--------------TDEEINLIRAHLASNSDL----QLDKPEQFLADLA--DIPHFSE 234
+ +R + L + +Q L ++
Sbjct: 119 SEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESYWGS 178
Query: 235 RIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRG 294
R+ + + +KL + L +S++L+ V +IL++GNFMN ++
Sbjct: 179 RMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSK--- 235
Query: 295 QADGFGLEILPKLKDVRSKDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVV 354
QA GF L L +L ++ NS+T L+++ + N + + + E V V
Sbjct: 236 QAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFND---FLSELEPVLDVVKVS 292
Query: 355 FDDIHSQLSTLAKKLDAVT--ISMNKVVQESKPDHMEPFRTKMESCVKTGK--------- 403
+ + + ++ + V + + + SK ++ K + +
Sbjct: 293 IEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDE 352
Query: 404 -------FKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKKEQDRIIKTK 454
F+S++ Y F +A F +++K + + +
Sbjct: 353 VKLTIMEFESLMHTYGEDSG----DKFAKISFFKKFADFINEYKKAQAQNLAAEEEER 406
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.1 bits (168), Expect = 1e-12
Identities = 60/379 (15%), Positives = 126/379 (33%), Gaps = 92/379 (24%)
Query: 80 VLGPLY---WTRLIVSPEIPSDTTPLWKELEEVPINNLEEFTELFSRQVTAQRPVTRKRQ 136
VL Y + + PS T ++ E + N+ + F + V+R
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---------KYNVSRL-- 134
Query: 137 QKSSKVQNVARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDA---SVVSLEALQQIYD 193
Q K++ L++ + ++NV + + + V+L+
Sbjct: 135 QPYLKLRQA--LLELRPAKNVL-----ID-----------GVLGSGKTWVALDVCLSYKV 176
Query: 194 VRATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHFSERIACFMFEADF---SDSIA 250
D +I + +L + PE L L + + + ++ SD +
Sbjct: 177 QCKMDFKIFWL--NLK-----NCNSPETVLEMLQKL--------LYQIDPNWTSRSDHSS 221
Query: 251 LIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLE--ILPKLK 308
I ++++I++ L+KS+ + + ++L N N + F L IL
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCL-LVLL--NVQN-----AKAWNAFNLSCKIL---- 269
Query: 309 DVRSKDNSVT-LLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAK 367
+ ++ VT L T++ L+ P +V D L
Sbjct: 270 -LTTRFKQVTDFLSAATTTHI-----SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 368 KLDAVTISMNKVVQESKPDHM-----------EPFRTKMESCVKTGKFKSVLKFYQYIPK 416
+ +S+ + ES D + + T +ES + + K + +
Sbjct: 324 TTNPRRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-- 378
Query: 417 GI-PES-DVTPKDLFMLWA 433
+ P S + L ++W
Sbjct: 379 SVFPPSAHIPTILLSLIWF 397
Score = 56.0 bits (134), Expect = 2e-08
Identities = 57/374 (15%), Positives = 108/374 (28%), Gaps = 103/374 (27%)
Query: 165 HIEFSEIESAIFNMDASVVSLEALQQIYDVRA---------TDEEINLIRAHLASNSDLQ 215
H++F E D V +A +D + + EEI+ I + S +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI---IMSKDAVS 62
Query: 216 ---------LDKPEQ----FLADL--ADIPHFSERIACFMFEA-DFSDSIALIDSKLNNI 259
L K E+ F+ ++ + I E S + + + +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK---TEQRQPSMMTRMYIEQRDRL 119
Query: 260 KSVCEFLMKS--EHLKKVIAIILSLGNFMNGGN-RLRGQADGFG-----LEILPKLKDVR 311
+ + K L+ + + +L N + G G G L++ K
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-GSGKTWVALDVCLSYKVQC 178
Query: 312 SKDNSV-------------------TLLHFIVRTYLRNSENPLNESLPVPEPGDVDRA-- 350
D + LL+ I + S++ N L + R
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 351 -------ASVVFDDIHSQLSTLAKKLDA-----VT---------ISMNKVVQESKPDHME 389
+V ++ + + + +T +S S H
Sbjct: 239 KSKPYENCLLVLLNVQN--AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 390 PFRTKMESCVKTGKFKSVL-KFYQYIPKGIPES--DVTPKDLFMLWAPFCHDFK---DFW 443
T E KS+L K+ P+ +P P+ L ++ D D W
Sbjct: 297 TL-TPDEV-------KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE-SIRDGLATWDNW 347
Query: 444 K----KEQDRIIKT 453
K + II++
Sbjct: 348 KHVNCDKLTTIIES 361
Score = 46.8 bits (110), Expect = 1e-05
Identities = 30/221 (13%), Positives = 73/221 (33%), Gaps = 57/221 (25%)
Query: 77 TPHVLGPLYWTRLIVSPE---IPSDT-TPLWKELEEVPINNLEEFTELFSRQVTAQRPVT 132
P ++ RL V P IP+ + +W ++ + +++ +
Sbjct: 367 EPAEYRKMFD-RLSVFPPSAHIPTILLSLIWFDVIK---SDVMVVVNKLHKYSLV----- 417
Query: 133 RKRQQKSSKVQNVARLIDSKRSQNVGILAQSLH---IEFSEIESAIFNMDASVVS----- 184
++Q K S + + ++ K +LH ++ I + D
Sbjct: 418 -EKQPKESTISIPSIYLELKVKLE---NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 185 -------LEALQQ---------IY-DVRATDEEINLIRAHLASNSDL-----QLDKPEQF 222
L+ ++ ++ D R +++I ++ + QL + +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 223 LAD--------LADIPHFSERIACFMFEADFSD--SIALID 253
+ D + I F +I + + ++D IAL+
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Score = 39.8 bits (92), Expect = 0.002
Identities = 34/273 (12%), Positives = 77/273 (28%), Gaps = 75/273 (27%)
Query: 207 HLASNSDLQLDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNNI--KSVCE 264
H + D + + + D+ + F + F+ D D + +I K +
Sbjct: 2 HHHHHMDFETGEHQYQYKDI--LSVFEDA---FVDNFDCKD----VQDMPKSILSKEEID 52
Query: 265 FLMKSEH----LKKVIAIILSLGN-----FMNGGNRLRGQAD-GFGLEILPKLKDVRSKD 314
++ S+ ++ +LS F+ + + F ++ +K +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL----RINYKF---LMSPIKT-EQRQ 104
Query: 315 NSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTI 374
S+ +I + L V +V R + +L +L
Sbjct: 105 PSMMTRMYI------EQRDRLYNDNQVFAKYNVSRL------QPYLKLRQALLELR---- 148
Query: 375 SMNKVVQESKPDHMEPFRTKMESCVKTGKFKSVL--------KFYQYIPKGI----PESD 422
V+ + + GK + + K + I ++
Sbjct: 149 PAKNVLIDG-----------VLGS---GK--TWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 423 VTPKDLF-MLWAPFCHDFKDFWKKEQDRIIKTK 454
+P+ + ML + W D K
Sbjct: 193 NSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIK 224
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 61.6 bits (149), Expect = 5e-11
Identities = 24/55 (43%), Positives = 26/55 (47%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
++ AP PP PPPP G PP MMG PP P MG P PP GT
Sbjct: 159 ASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPM 213
Score = 58.9 bits (142), Expect = 3e-10
Identities = 20/55 (36%), Positives = 20/55 (36%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
AA P P PPP MG PPP MMG PP P MG
Sbjct: 149 TVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPM 203
Score = 57.7 bits (139), Expect = 9e-10
Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTP--PPPPPMMGTTPHVL 81
P + PPPP PP P MG P PP GTP PPP M P +
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMR 228
Query: 82 GPL 84
G L
Sbjct: 229 GLL 231
Score = 55.4 bits (133), Expect = 5e-09
Identities = 15/55 (27%), Positives = 15/55 (27%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
V AA P G PP PPP M PPP P
Sbjct: 148 GTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202
Score = 55.0 bits (132), Expect = 9e-09
Identities = 15/60 (25%), Positives = 17/60 (28%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
V + P PPP MG PPP MMG P + P
Sbjct: 139 QQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPP 198
Score = 54.3 bits (130), Expect = 1e-08
Identities = 14/60 (23%), Positives = 17/60 (28%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
V P + G P PP G PPPP P ++GP
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGP 191
Score = 50.0 bits (119), Expect = 4e-07
Identities = 12/61 (19%), Positives = 13/61 (21%), Gaps = 1/61 (1%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPM-MGTTPHVLG 82
P P P P G PPPPM G P +
Sbjct: 130 PVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMM 189
Query: 83 P 83
Sbjct: 190 G 190
Score = 48.9 bits (116), Expect = 9e-07
Identities = 9/56 (16%), Positives = 12/56 (21%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
A P P P L P +G +M + G
Sbjct: 116 AGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPG 171
Score = 47.3 bits (112), Expect = 3e-06
Identities = 10/56 (17%), Positives = 10/56 (17%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
A P P P T T PP P G
Sbjct: 128 AGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGA 183
Score = 46.9 bits (111), Expect = 3e-06
Identities = 8/56 (14%), Positives = 11/56 (19%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
+P A P P M + + P P P
Sbjct: 120 MPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGP 175
Score = 42.3 bits (99), Expect = 1e-04
Identities = 11/67 (16%), Positives = 16/67 (23%), Gaps = 6/67 (8%)
Query: 27 QAAPPPPPPPPPLPPP------PPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHV 80
+AA P P+P P P + TP + + P
Sbjct: 108 RAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQ 167
Query: 81 LGPLYWT 87
P
Sbjct: 168 YPPGRGG 174
Score = 41.2 bits (96), Expect = 3e-04
Identities = 7/57 (12%), Positives = 8/57 (14%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P +P P G P P M
Sbjct: 106 IGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIA 162
Score = 34.2 bits (78), Expect = 0.051
Identities = 9/64 (14%), Positives = 11/64 (17%), Gaps = 4/64 (6%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPP----PPPMMGTPPPPPPMMGTTPH 79
+ P P G M P P +G P
Sbjct: 90 TGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGT 149
Query: 80 VLGP 83
V
Sbjct: 150 VAAA 153
Score = 32.7 bits (74), Expect = 0.16
Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 26 VQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPP--PPPMMGTPPPPPPMMGTTPHVLGP 83
V PPP P+ G P +G P + P P + G V GP
Sbjct: 78 VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP 137
Score = 28.8 bits (64), Expect = 3.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMG 47
+P + P PPP PPPP M G
Sbjct: 204 GIPPGRGTPMGMPPPGMRPPPPGMRG 229
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 52.0 bits (124), Expect = 8e-08
Identities = 16/53 (30%), Positives = 18/53 (33%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
+A PP P G P + G P P PPPP G T H
Sbjct: 173 KAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTHH 225
Score = 44.3 bits (104), Expect = 3e-05
Identities = 12/68 (17%), Positives = 15/68 (22%)
Query: 5 DKRAKRRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMM 64
+ E + + A P P P P P PPPP
Sbjct: 161 KTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPA 220
Query: 65 GTPPPPPP 72
G
Sbjct: 221 GQTHHHHH 228
Score = 42.0 bits (98), Expect = 2e-04
Identities = 9/52 (17%), Positives = 11/52 (21%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
+ PP P G P + G P P P
Sbjct: 163 TQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGP 214
Score = 41.2 bits (96), Expect = 3e-04
Identities = 10/73 (13%), Positives = 14/73 (19%)
Query: 11 RKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPP 70
K+ + + S Q+ P P G P
Sbjct: 148 NKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPG 207
Query: 71 PPMMGTTPHVLGP 83
P G P
Sbjct: 208 PAGPGGPPPPFPA 220
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 53.7 bits (128), Expect = 8e-08
Identities = 15/71 (21%), Positives = 17/71 (23%)
Query: 13 KKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
KK Y A P P P P G + M P P MG P
Sbjct: 5 KKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTP 64
Query: 73 MMGTTPHVLGP 83
+
Sbjct: 65 AQEQLHQQIDQ 75
Score = 52.1 bits (124), Expect = 3e-07
Identities = 9/56 (16%), Positives = 11/56 (19%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
P P P M P MG P T+ +
Sbjct: 26 PAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMN 81
Score = 51.0 bits (121), Expect = 5e-07
Identities = 10/56 (17%), Positives = 14/56 (25%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
P++ P L T+ M P P P+ TP
Sbjct: 54 PSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPL 109
Score = 49.4 bits (117), Expect = 2e-06
Identities = 8/63 (12%), Positives = 12/63 (19%)
Query: 21 FSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHV 80
+P A P P + + P M P
Sbjct: 45 MGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQ 104
Query: 81 LGP 83
+G
Sbjct: 105 MGT 107
Score = 49.1 bits (116), Expect = 2e-06
Identities = 8/58 (13%), Positives = 11/58 (18%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
+P A PP + + TP M H
Sbjct: 29 FMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLH 86
Score = 49.1 bits (116), Expect = 3e-06
Identities = 14/80 (17%), Positives = 16/80 (20%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYW 86
Q + P P P MGTP P P
Sbjct: 68 QLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAA 127
Query: 87 TRLIVSPEIPSDTTPLWKEL 106
+ P L EL
Sbjct: 128 MGQNMRPMNQLYPIDLLTEL 147
Score = 48.3 bits (114), Expect = 4e-06
Identities = 8/60 (13%), Positives = 9/60 (15%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
Q P + P P P P M P
Sbjct: 56 MGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQP 115
Score = 48.3 bits (114), Expect = 4e-06
Identities = 10/62 (16%), Positives = 14/62 (22%), Gaps = 2/62 (3%)
Query: 24 PNVQAAPPPPPPPPPLPP--PPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVL 81
P AA +PP P MG + M ++
Sbjct: 32 PQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLV 91
Query: 82 GP 83
P
Sbjct: 92 DP 93
Score = 47.1 bits (111), Expect = 9e-06
Identities = 10/62 (16%), Positives = 14/62 (22%), Gaps = 2/62 (3%)
Query: 17 YSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGT 76
+ S+ Q P + + P P P P MGT
Sbjct: 50 QGAVPSMGQQQFLTPAQEQLH--QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGT 107
Query: 77 TP 78
Sbjct: 108 PL 109
Score = 47.1 bits (111), Expect = 9e-06
Identities = 7/59 (11%), Positives = 10/59 (16%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLY 85
Q + PP + P + M PL
Sbjct: 33 QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLV 91
Score = 46.7 bits (110), Expect = 1e-05
Identities = 17/97 (17%), Positives = 23/97 (23%), Gaps = 1/97 (1%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
+ PL P M P MGTP P + P
Sbjct: 75 QATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRP 134
Query: 84 LYWTRLI-VSPEIPSDTTPLWKELEEVPINNLEEFTE 119
+ I + E+P T L + I
Sbjct: 135 MNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVP 171
Score = 46.7 bits (110), Expect = 1e-05
Identities = 8/60 (13%), Positives = 10/60 (16%), Gaps = 2/60 (3%)
Query: 21 FSLPNVQAAPPPPPPPPPLPP--PPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
S + P P P T + P P P
Sbjct: 40 MSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQP 99
Score = 46.0 bits (108), Expect = 2e-05
Identities = 8/60 (13%), Positives = 11/60 (18%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
+ A P P + P P P G +G
Sbjct: 71 QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130
Score = 46.0 bits (108), Expect = 2e-05
Identities = 7/62 (11%), Positives = 11/62 (17%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
QA P P + P P P + +
Sbjct: 72 QIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQN 131
Query: 84 LY 85
+
Sbjct: 132 MR 133
Score = 45.6 bits (107), Expect = 3e-05
Identities = 5/60 (8%), Positives = 10/60 (16%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
+ PP P + + M + + P
Sbjct: 40 MSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQP 99
Score = 45.2 bits (106), Expect = 4e-05
Identities = 11/62 (17%), Positives = 16/62 (25%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVL 81
S+ ++ P P P + P P P G P + L
Sbjct: 79 SMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQL 138
Query: 82 GP 83
P
Sbjct: 139 YP 140
Score = 43.7 bits (102), Expect = 1e-04
Identities = 4/56 (7%), Positives = 7/56 (12%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
PP T + + P+
Sbjct: 39 GMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPN 94
Score = 43.7 bits (102), Expect = 1e-04
Identities = 6/52 (11%), Positives = 9/52 (17%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
A M P++ P + P P
Sbjct: 65 AQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPM 116
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR
{Artemisia vulgaris}
Length = 108
Score = 49.0 bits (116), Expect = 1e-07
Identities = 19/54 (35%), Positives = 22/54 (40%)
Query: 25 NVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
+ +PP P PP PPP G +P P PPPP G PP P
Sbjct: 52 DCSKSPPGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVDGGSPPPP 105
Score = 46.3 bits (109), Expect = 1e-06
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 24 PNVQAAPPPPPPPPP----LPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPP 71
P PP PPP P PP G+ PPP G PP G+PPPP
Sbjct: 57 PPGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVDG--GSPPPPS 106
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 46.9 bits (111), Expect = 1e-05
Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 8/74 (10%)
Query: 1 MEYMDKRAKRRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPP 60
++ +D RK++E + P P + P + P G
Sbjct: 559 VDKLDASESLRKEEE--------QATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTA 610
Query: 61 PPMMGTPPPPPPMM 74
P P M
Sbjct: 611 PAYGQPQPGFGYSM 624
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 44.4 bits (104), Expect = 5e-05
Identities = 14/78 (17%), Positives = 18/78 (23%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P+ L PP + PPP PP T + P G
Sbjct: 24 PSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGT 83
Query: 84 LYWTRLIVSPEIPSDTTP 101
+ P P
Sbjct: 84 TSLAPAVRYGRQPGPEAP 101
Score = 42.8 bits (100), Expect = 2e-04
Identities = 13/69 (18%), Positives = 18/69 (26%), Gaps = 9/69 (13%)
Query: 24 PNVQAAPPPPPPPPPLPPPPP-----MMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGT-- 76
+ P P + PP + P PPPP PP +
Sbjct: 10 HSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDS 69
Query: 77 --TPHVLGP 83
+ GP
Sbjct: 70 VLQRILRGP 78
Score = 41.3 bits (96), Expect = 5e-04
Identities = 17/84 (20%), Positives = 23/84 (27%), Gaps = 4/84 (4%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMM----GTT 77
S + P P T+ PP + P PPPP
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 78 PHVLGPLYWTRLIVSPEIPSDTTP 101
V G R++ P P T+
Sbjct: 63 DTVTGDSVLQRILRGPTGPGTTSL 86
Score = 38.6 bits (89), Expect = 0.004
Identities = 12/75 (16%), Positives = 14/75 (18%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWTR 88
+ P GTT P PP P +
Sbjct: 64 TVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEP 123
Query: 89 LIVSPEIPSDTTPLW 103
V E S W
Sbjct: 124 DPVRVEEVSRRIKRW 138
Score = 36.3 bits (83), Expect = 0.019
Identities = 21/98 (21%), Positives = 27/98 (27%), Gaps = 5/98 (5%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPM-MGTPPPPP-PMMGTTPHVL 81
P P PPPPP P PP T + P GT P G P
Sbjct: 42 PVTVPDPAPPPPPAPAAGNPP--DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPE 99
Query: 82 GPLYWTRLIVSPEIPSDTTPLWKELEEVPINNLEEFTE 119
P +P E + V + + +
Sbjct: 100 APASAPPA-AGRAVPGLYHHPVPEPDPVRVEEVSRRIK 136
Score = 33.2 bits (75), Expect = 0.18
Identities = 12/52 (23%), Positives = 14/52 (26%), Gaps = 4/52 (7%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMM 74
AP P P P + PP G P P P P +
Sbjct: 81 PGTTSLAPAVRYGRQPGPEAPA----SAPPAAGRAVPGLYHHPVPEPDPVRV 128
Score = 33.2 bits (75), Expect = 0.19
Identities = 9/40 (22%), Positives = 11/40 (27%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPP 61
+ P P PP G P + P P P
Sbjct: 84 TSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEP 123
Score = 30.5 bits (68), Expect = 1.3
Identities = 7/69 (10%), Positives = 10/69 (14%), Gaps = 2/69 (2%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMG--TPPPPPPMMGTPPPPPPMMGTTPH 79
++ P G P PP G P
Sbjct: 64 TVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEP 123
Query: 80 VLGPLYWTR 88
+
Sbjct: 124 DPVRVEEVS 132
Score = 29.0 bits (64), Expect = 3.2
Identities = 9/56 (16%), Positives = 15/56 (26%)
Query: 46 MGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWTRLIVSPEIPSDTTP 101
MG++ + P P + L L+ + P P P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAP 56
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 44.1 bits (103), Expect = 6e-05
Identities = 36/191 (18%), Positives = 54/191 (28%), Gaps = 17/191 (8%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVL 81
+LPN P PPP PP G TP + P P G++
Sbjct: 17 NLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSG--- 73
Query: 82 GPLYWTRLIVSPEIPSDTTPLWKELEEVPINNLEEFTELFSRQVTAQRPVTRKRQQKSSK 141
S + K+ E S R
Sbjct: 74 ----------GGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEP 123
Query: 142 VQNVARLIDSKRSQ-NVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQ-IYDVRATDE 199
+ A+ K+ + I + EFS++ V +E L+ + VR+
Sbjct: 124 HTDWAKYFKGKKIHGEIDIKVEQ--AEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKP 181
Query: 200 EINLIRAHLAS 210
+ LIR H S
Sbjct: 182 DFVLIRQHAFS 192
Score = 43.3 bits (101), Expect = 1e-04
Identities = 14/58 (24%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Query: 19 NIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGT 76
N + + PPPPPP P P G+ P P P G
Sbjct: 20 NGYMTDLQRPQPPPPPPSAASPGATP--GSAAASAERASTAAPVASPAAPSPGSSGGG 75
Score = 41.0 bits (95), Expect = 6e-04
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 9 KRR-KKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTP 67
+RR +N+ + P PPPPPP P + P+
Sbjct: 6 RRRLSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPA 65
Query: 68 PPPPPMMGTT 77
P P G
Sbjct: 66 APSPGSSGGG 75
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 43.3 bits (101), Expect = 6e-05
Identities = 10/53 (18%), Positives = 10/53 (18%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
Q P P G P G P G P H
Sbjct: 33 QGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTH 85
Score = 42.5 bits (99), Expect = 1e-04
Identities = 8/50 (16%), Positives = 8/50 (16%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
P P G PP G P G
Sbjct: 2 SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHG 51
Score = 41.4 bits (96), Expect = 2e-04
Identities = 11/66 (16%), Positives = 12/66 (18%), Gaps = 3/66 (4%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPP---PPPMMGTTPHV 80
P P P P G P G P P G
Sbjct: 6 PKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQP 65
Query: 81 LGPLYW 86
G +
Sbjct: 66 HGGGWG 71
Score = 40.2 bits (93), Expect = 6e-04
Identities = 11/57 (19%), Positives = 12/57 (21%), Gaps = 4/57 (7%)
Query: 27 QAAPPP----PPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
+ P P P G PP G P G P G
Sbjct: 3 KKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHG 59
Score = 39.4 bits (91), Expect = 0.001
Identities = 11/55 (20%), Positives = 12/55 (21%), Gaps = 2/55 (3%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
+ P P P G PP G P PH G
Sbjct: 2 SKKRPKPGGGWNTGGSRYPGQGSP--GGNRYPPQGGGGWGQPHGGGWGQPHGGGW 54
Score = 39.4 bits (91), Expect = 0.001
Identities = 8/52 (15%), Positives = 8/52 (15%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
P P G P G P P G
Sbjct: 32 PQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGG 83
Score = 39.4 bits (91), Expect = 0.001
Identities = 9/59 (15%), Positives = 10/59 (16%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLG 82
P+ P P G P P G LG
Sbjct: 57 PHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLG 115
Score = 39.1 bits (90), Expect = 0.001
Identities = 9/56 (16%), Positives = 10/56 (17%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
P + PP G G P G P G
Sbjct: 20 PGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG 75
Score = 37.1 bits (85), Expect = 0.007
Identities = 9/55 (16%), Positives = 9/55 (16%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
Q P P G P G P G P
Sbjct: 37 GWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKP 91
Score = 36.0 bits (82), Expect = 0.014
Identities = 6/45 (13%), Positives = 6/45 (13%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPP 71
P P P G P P
Sbjct: 50 HGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKP 94
Score = 36.0 bits (82), Expect = 0.017
Identities = 6/55 (10%), Positives = 6/55 (10%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
P P G P G P
Sbjct: 38 WGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPS 92
Score = 35.2 bits (80), Expect = 0.024
Identities = 11/57 (19%), Positives = 11/57 (19%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
Q P P G P G G P HV G
Sbjct: 48 QPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGA 104
Score = 34.0 bits (77), Expect = 0.062
Identities = 7/55 (12%), Positives = 7/55 (12%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
P P G P G P P
Sbjct: 46 WGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKH 100
Score = 31.0 bits (69), Expect = 0.61
Identities = 4/55 (7%), Positives = 6/55 (10%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
P+ P P + G
Sbjct: 65 PHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYML 119
Score = 30.6 bits (68), Expect = 0.73
Identities = 2/54 (3%), Positives = 3/54 (5%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P P +
Sbjct: 72 QPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSR 125
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 42.4 bits (99), Expect = 1e-04
Identities = 16/57 (28%), Positives = 21/57 (36%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
S+ V A PP PP P + P + PP P++ P P P P
Sbjct: 36 SVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKP 92
Score = 41.2 bits (96), Expect = 3e-04
Identities = 14/60 (23%), Positives = 16/60 (26%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P P P P P P PP + P P P P P + P
Sbjct: 55 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASP 114
Score = 40.5 bits (94), Expect = 6e-04
Identities = 12/60 (20%), Positives = 14/60 (23%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
+ P P P P P P + P P P T P L
Sbjct: 66 EPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTS 125
Score = 40.1 bits (93), Expect = 8e-04
Identities = 15/56 (26%), Positives = 17/56 (30%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
L QA PPP P P P + P P P P P + P
Sbjct: 45 LEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQP 100
Score = 40.1 bits (93), Expect = 8e-04
Identities = 12/74 (16%), Positives = 19/74 (25%), Gaps = 2/74 (2%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P + P P P + P P + + T GP
Sbjct: 84 PKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGP 143
Query: 84 LYWTRLIVSPEIPS 97
+R P+ P+
Sbjct: 144 RALSR--NQPQYPA 155
Score = 40.1 bits (93), Expect = 8e-04
Identities = 12/60 (20%), Positives = 14/60 (23%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P P P P P PP P P P P+ P +
Sbjct: 54 PPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPAS 113
Score = 39.7 bits (92), Expect = 8e-04
Identities = 9/60 (15%), Positives = 12/60 (20%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P P P P P P P P P + ++
Sbjct: 73 KEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAAT 132
Score = 39.7 bits (92), Expect = 0.001
Identities = 10/55 (18%), Positives = 11/55 (20%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
P PP P P P P P + P T
Sbjct: 65 PEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTA 119
Score = 39.7 bits (92), Expect = 0.001
Identities = 14/61 (22%), Positives = 15/61 (24%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P V P P P P P P P P T P T P
Sbjct: 76 PVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKP 135
Query: 84 L 84
+
Sbjct: 136 V 136
Score = 39.3 bits (91), Expect = 0.001
Identities = 11/60 (18%), Positives = 13/60 (21%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P P P P P P P+ P P P T+
Sbjct: 72 PKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAA 131
Score = 38.9 bits (90), Expect = 0.002
Identities = 12/55 (21%), Positives = 14/55 (25%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
PPP P + P P PP P P P P+
Sbjct: 44 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQE 98
Score = 38.9 bits (90), Expect = 0.002
Identities = 12/53 (22%), Positives = 18/53 (33%)
Query: 20 IFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
+ + +++ PPP P+ P P P P P P P P
Sbjct: 39 MVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK 91
Score = 38.2 bits (88), Expect = 0.003
Identities = 10/60 (16%), Positives = 13/60 (21%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P + P PP P + P P + P P P
Sbjct: 63 PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPAR 122
Score = 38.2 bits (88), Expect = 0.003
Identities = 11/55 (20%), Positives = 11/55 (20%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
P P P P PP P P P P P
Sbjct: 52 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKP 106
Score = 37.8 bits (87), Expect = 0.003
Identities = 14/79 (17%), Positives = 19/79 (24%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P P P PP P + P P P P+
Sbjct: 58 VVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFEN 117
Query: 84 LYWTRLIVSPEIPSDTTPL 102
RL S + + P+
Sbjct: 118 TAPARLTSSTATAATSKPV 136
Score = 37.8 bits (87), Expect = 0.004
Identities = 12/55 (21%), Positives = 15/55 (27%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
P + P P P P+P PP P P P + P
Sbjct: 53 PPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPV 107
Score = 37.4 bits (86), Expect = 0.005
Identities = 12/51 (23%), Positives = 13/51 (25%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
+ P P PP PP P P P PP P
Sbjct: 32 AQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKP 82
Score = 36.6 bits (84), Expect = 0.011
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 22 SLPNVQAAPPPPPP-----PPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGT 76
S+ V P P P P PP PP + P P P + PP P++
Sbjct: 21 SVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIE 80
Query: 77 TP 78
P
Sbjct: 81 KP 82
Score = 36.2 bits (83), Expect = 0.011
Identities = 10/47 (21%), Positives = 13/47 (27%)
Query: 26 VQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
+ P P P M+ PPP + P P P
Sbjct: 20 MSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPE 66
Score = 33.5 bits (76), Expect = 0.10
Identities = 12/55 (21%), Positives = 15/55 (27%)
Query: 18 SNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
S + + + P P P M T PPP P P P
Sbjct: 11 SGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEP 65
Score = 30.5 bits (68), Expect = 0.95
Identities = 11/65 (16%), Positives = 17/65 (26%)
Query: 6 KRAKRRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMG 65
+ K + K + + P P P P P T+ T P +
Sbjct: 82 PKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVAS 141
Query: 66 TPPPP 70
P
Sbjct: 142 GPRAL 146
Score = 30.5 bits (68), Expect = 1.0
Identities = 8/51 (15%), Positives = 11/51 (21%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMM 74
+ A P P T P+ P + P P
Sbjct: 107 VESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPARA 157
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 42.9 bits (100), Expect = 1e-04
Identities = 13/52 (25%), Positives = 15/52 (28%), Gaps = 2/52 (3%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPP--PMMGTPPPPPPMMGT 76
+ P P P P GT G+ P G P P GT
Sbjct: 337 RPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSSPDWGT 388
Score = 42.9 bits (100), Expect = 1e-04
Identities = 10/52 (19%), Positives = 11/52 (21%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
A P P P G P GT + P G
Sbjct: 329 SAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIR 380
Score = 41.8 bits (97), Expect = 3e-04
Identities = 11/53 (20%), Positives = 13/53 (24%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
A P P P G P GT P P G+ +
Sbjct: 316 SAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSS 368
Score = 41.4 bits (96), Expect = 5e-04
Identities = 8/46 (17%), Positives = 9/46 (19%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMG 75
P P P P G+ G P P
Sbjct: 324 RPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSF 369
Score = 39.8 bits (92), Expect = 0.001
Identities = 10/55 (18%), Positives = 13/55 (23%), Gaps = 2/55 (3%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPP--PMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
+ P P P P GT P P G+ P +
Sbjct: 324 RPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGN 378
Score = 39.8 bits (92), Expect = 0.001
Identities = 12/56 (21%), Positives = 14/56 (25%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
P P P P G+ G P P P P P T +
Sbjct: 305 GTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWN 360
Score = 39.5 bits (91), Expect = 0.002
Identities = 11/46 (23%), Positives = 12/46 (26%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P P P P G+ G P P P P P
Sbjct: 295 NPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEP 340
Score = 39.1 bits (90), Expect = 0.002
Identities = 12/46 (26%), Positives = 13/46 (28%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
A P P P G P GT P P G+ P
Sbjct: 303 SAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNP 348
Score = 38.7 bits (89), Expect = 0.003
Identities = 10/46 (21%), Positives = 11/46 (23%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P P G P GT P P G+ P
Sbjct: 277 SIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNP 322
Score = 38.3 bits (88), Expect = 0.004
Identities = 12/74 (16%), Positives = 14/74 (18%), Gaps = 2/74 (2%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMM--GTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWT 87
P P P +G P G+ P P P W
Sbjct: 262 GTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWN 321
Query: 88 RLIVSPEIPSDTTP 101
P P
Sbjct: 322 PGRPEPGSAGTWNP 335
Score = 38.3 bits (88), Expect = 0.004
Identities = 7/103 (6%), Positives = 21/103 (20%), Gaps = 2/103 (1%)
Query: 1 MEYMDKRAKRRKKKETYSNIF--SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPP 58
+ K+ ++ + LP ++ + P P ++
Sbjct: 181 YKNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQ 240
Query: 59 PPPPMMGTPPPPPPMMGTTPHVLGPLYWTRLIVSPEIPSDTTP 101
+ + G + + P
Sbjct: 241 TKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNP 283
Score = 37.9 bits (87), Expect = 0.005
Identities = 5/49 (10%), Positives = 7/49 (14%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P +G P G+ P
Sbjct: 248 FGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNP 296
Score = 37.9 bits (87), Expect = 0.006
Identities = 13/56 (23%), Positives = 15/56 (26%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
NV P P P G+ G P P P P P T +
Sbjct: 279 GNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWN 334
Score = 37.5 bits (86), Expect = 0.007
Identities = 11/56 (19%), Positives = 13/56 (23%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
+P P P G P P GT P P G+
Sbjct: 264 GLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGT 319
Score = 37.5 bits (86), Expect = 0.008
Identities = 5/68 (7%), Positives = 11/68 (16%)
Query: 12 KKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPP 71
++ + T P +G P
Sbjct: 226 QEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGS 285
Query: 72 PMMGTTPH 79
G++
Sbjct: 286 YGPGSSGT 293
Score = 37.1 bits (85), Expect = 0.009
Identities = 5/53 (9%), Positives = 9/53 (16%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGT 76
++ + P GT G+ P
Sbjct: 243 MVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWN 295
Score = 37.1 bits (85), Expect = 0.010
Identities = 12/54 (22%), Positives = 13/54 (24%), Gaps = 2/54 (3%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPP--PMMGTPPPPPPMMGTPPPPPPMMGTTP 78
P P P P GT P P G+ P P P
Sbjct: 285 SYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRP 338
Score = 36.8 bits (84), Expect = 0.011
Identities = 12/49 (24%), Positives = 14/49 (28%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
AP P P G+ P GT P P G+ P
Sbjct: 261 QGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNP 309
Score = 36.8 bits (84), Expect = 0.011
Identities = 7/55 (12%), Positives = 9/55 (16%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
+ P P P G+ P P P
Sbjct: 271 RKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRP 325
Score = 36.8 bits (84), Expect = 0.012
Identities = 7/43 (16%), Positives = 7/43 (16%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGT 66
N P G P P GT
Sbjct: 346 WNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSSPDWGT 388
Score = 36.8 bits (84), Expect = 0.013
Identities = 10/56 (17%), Positives = 13/56 (23%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
P P GT+ + P GT P P G+
Sbjct: 251 DGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGT 306
Score = 36.8 bits (84), Expect = 0.013
Identities = 8/75 (10%), Positives = 12/75 (16%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYW 86
P P P P T + P
Sbjct: 243 MVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPG 302
Query: 87 TRLIVSPEIPSDTTP 101
+ +P P +
Sbjct: 303 SAGTWNPGRPEPGSA 317
Score = 34.5 bits (78), Expect = 0.075
Identities = 8/60 (13%), Positives = 11/60 (18%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P A + G + P P + P GP
Sbjct: 229 PLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGP 288
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 39.1 bits (91), Expect = 7e-04
Identities = 7/57 (12%), Positives = 10/57 (17%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
+ P G + P G P P + L
Sbjct: 18 GSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAGTSVTLQLDD 74
Score = 38.7 bits (90), Expect = 0.001
Identities = 7/55 (12%), Positives = 11/55 (20%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVL 81
+ + P P P P G GT+ +
Sbjct: 17 RGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAGTSVTLQ 71
Score = 37.6 bits (87), Expect = 0.002
Identities = 9/76 (11%), Positives = 12/76 (15%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYW 86
P P P P P G G
Sbjct: 7 HHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAGT 66
Query: 87 TRLIVSPEIPSDTTPL 102
+ + + T L
Sbjct: 67 SVTLQLDDGSGRTYQL 82
Score = 36.4 bits (84), Expect = 0.006
Identities = 7/58 (12%), Positives = 7/58 (12%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVL 81
V P P P P T L
Sbjct: 13 GLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAGTSVTL 70
Score = 35.3 bits (81), Expect = 0.017
Identities = 8/61 (13%), Positives = 11/61 (18%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLG 82
+ + Q P P G P P P + G
Sbjct: 1 MGSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGG 60
Query: 83 P 83
Sbjct: 61 Y 61
Score = 34.5 bits (79), Expect = 0.027
Identities = 6/60 (10%), Positives = 8/60 (13%), Gaps = 3/60 (5%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLG 82
+P P P P G + G
Sbjct: 21 MPQGGGYAEPAGRDYDYGQSGAPDYGQPAP---GGYSGYGQGGYGSAGTSVTLQLDDGSG 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication,
ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus;
2.60A {Saccharomyces cerevisiae}
Length = 371
Score = 39.9 bits (92), Expect = 0.001
Identities = 8/57 (14%), Positives = 15/57 (26%)
Query: 16 TYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
T + ++ +++ P P + P T PPP
Sbjct: 3 TPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSS 59
Score = 38.4 bits (88), Expect = 0.003
Identities = 7/57 (12%), Positives = 10/57 (17%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHV 80
+ PP P T T P ++ V
Sbjct: 7 AITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFAV 63
Score = 38.4 bits (88), Expect = 0.004
Identities = 8/52 (15%), Positives = 12/52 (23%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPM 73
S+ P P +T PPP P + +
Sbjct: 12 SMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFAV 63
Score = 37.6 bits (86), Expect = 0.007
Identities = 9/59 (15%), Positives = 15/59 (25%)
Query: 25 NVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
+ PP P ++ +P T PP P ++ P
Sbjct: 6 SAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFAVP 64
Score = 37.2 bits (85), Expect = 0.008
Identities = 6/52 (11%), Positives = 8/52 (15%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHV 80
PP P + PP P +
Sbjct: 15 GPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFAVPTI 66
Score = 37.2 bits (85), Expect = 0.009
Identities = 11/72 (15%), Positives = 15/72 (20%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVL 81
SL + A PP P PPP ++
Sbjct: 1 SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSS 60
Query: 82 GPLYWTRLIVSP 93
+ SP
Sbjct: 61 FAVPTIHFKESP 72
Score = 35.7 bits (81), Expect = 0.028
Identities = 4/64 (6%), Positives = 10/64 (15%)
Query: 18 SNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTT 77
+ + ++ PP + P P
Sbjct: 3 TPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFA 62
Query: 78 PHVL 81
+
Sbjct: 63 VPTI 66
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 39.9 bits (93), Expect = 0.001
Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPP---PP 72
PP PPP P G PP P G PPPP PP
Sbjct: 383 QQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPP 429
Score = 38.4 bits (89), Expect = 0.004
Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 8 AKRRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPP--PPMMGTTPP--PMMGTPPPPP-- 61
A + K+ P PPP PP P G P P G PPPP
Sbjct: 368 AAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGA 427
Query: 62 PMMGTPPPPPP 72
P G PP PP
Sbjct: 428 PPQGAPPAAPP 438
Score = 33.0 bits (75), Expect = 0.23
Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 18 SNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTP-PPMMGTPPPPPPMMGTPPP--PPPMM 74
++ + + A PP P G PP P G PP PPP
Sbjct: 366 ADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQ 425
Query: 75 GTTPHVLGP 83
G P P
Sbjct: 426 GAPPQGAPP 434
Score = 28.4 bits (63), Expect = 5.5
Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 1/75 (1%)
Query: 10 RRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPP 69
+ KET + + + A P M M PP PPP
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPP 397
Query: 70 P-PPMMGTTPHVLGP 83
P G P P
Sbjct: 398 QGYPPQGYPPQGYPP 412
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 39.5 bits (91), Expect = 0.001
Identities = 8/52 (15%), Positives = 12/52 (23%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMG 75
P P+ P T +G+ P P T +
Sbjct: 243 YQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVN 294
Score = 37.6 bits (86), Expect = 0.005
Identities = 6/58 (10%), Positives = 9/58 (15%)
Query: 21 FSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
+ L P + P T + P P
Sbjct: 231 WDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRS 288
Score = 36.4 bits (83), Expect = 0.013
Identities = 7/56 (12%), Positives = 10/56 (17%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
P +P P T P P + P+
Sbjct: 261 PTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHAGMKSLNKAPY 316
Score = 36.1 bits (82), Expect = 0.019
Identities = 4/50 (8%), Positives = 7/50 (14%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPP 71
N P P + + P +
Sbjct: 261 PTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHAGMKS 310
Score = 35.7 bits (81), Expect = 0.025
Identities = 6/57 (10%), Positives = 10/57 (17%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
+ +P P +G+ P P P
Sbjct: 249 TNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYH 305
Score = 33.7 bits (76), Expect = 0.10
Identities = 4/52 (7%), Positives = 8/52 (15%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
P P + + + P P+
Sbjct: 251 RPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASV 302
Score = 33.4 bits (75), Expect = 0.12
Identities = 5/55 (9%), Positives = 8/55 (14%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
+V P P T + P +
Sbjct: 253 GSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHAG 307
Score = 33.0 bits (74), Expect = 0.18
Identities = 5/51 (9%), Positives = 10/51 (19%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
+ +V + P P + P + P
Sbjct: 269 TTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHAGMKSLNKAPYSSN 319
Score = 32.2 bits (72), Expect = 0.32
Identities = 6/51 (11%), Positives = 10/51 (19%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
+ Q+ P P + P M + P
Sbjct: 266 TTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHAGMKSLNKAPY 316
Score = 31.8 bits (71), Expect = 0.38
Identities = 9/70 (12%), Positives = 15/70 (21%)
Query: 3 YMDKRAKRRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPP 62
Y+D+R+ +R S + + P T T P
Sbjct: 237 YLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPV 296
Query: 63 MMGTPPPPPP 72
Sbjct: 297 STPASVEYHA 306
Score = 31.8 bits (71), Expect = 0.39
Identities = 8/59 (13%), Positives = 10/59 (16%)
Query: 14 KETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
K SN + P P P + M P
Sbjct: 259 KSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHAGMKSLNKAPYS 317
Score = 29.9 bits (66), Expect = 1.9
Identities = 4/52 (7%), Positives = 10/52 (19%), Gaps = 2/52 (3%)
Query: 22 SLPNVQAAPPPPPPPPP--LPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPP 71
+ + P P + + P + + P
Sbjct: 268 NTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHAGMKSLNKAPYSSN 319
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding
protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A
1jh4_A
Length = 144
Score = 38.3 bits (88), Expect = 0.001
Identities = 4/48 (8%), Positives = 7/48 (14%)
Query: 31 PPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
P P + + P P +
Sbjct: 2 PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQG 49
Score = 36.7 bits (84), Expect = 0.004
Identities = 9/57 (15%), Positives = 13/57 (22%)
Query: 26 VQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLG 82
+ +A P +P G P P M T +L
Sbjct: 3 LGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLA 59
Score = 33.7 bits (76), Expect = 0.049
Identities = 10/49 (20%), Positives = 11/49 (22%)
Query: 35 PPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P P + T P P P M HV G
Sbjct: 2 PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQ 50
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.002
Identities = 61/385 (15%), Positives = 119/385 (30%), Gaps = 151/385 (39%)
Query: 121 FSRQVTAQRPVTRKRQQKSSKVQNVARLIDSKRSQNVGILAQSLHIEFSEIESAIF---- 176
+ ++ A+RP +K + L + N ++A IF
Sbjct: 127 ITARIMAKRPFDKKSN---------SALFRAVGEGNAQLVA-------------IFGGQG 164
Query: 177 NMDASVVSLEALQQIYDV----------RATDEEINLIRAHLASNS------DLQ--LDK 218
N D E L+ +Y + + LIR L + ++ L+
Sbjct: 165 NTD---DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 219 PEQ-----FLAD---------LADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVC- 263
P +L + + H+ + + + + + + + +
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHY--VVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 264 -----------EFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILP--KLKDV 310
F ++K I ++ +G +R + + LP L+D
Sbjct: 280 AVAIAETDSWESFF---VSVRKAITVLFFIG--------VRCY-EAYPNTSLPPSILED- 326
Query: 311 RSKDN---------SVT-LLHFIVRTYLR--NSENPLNE----SLPVPEPGDVDRAASVV 354
S +N S++ L V+ Y+ NS P + SL V+ A ++V
Sbjct: 327 -SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL-------VNGAKNLV 378
Query: 355 FDDIHSQLSTLAKKLDAVTISMNKVVQESKPD-HMEPFRTKMESCVKTGKFKSVLKFY-Q 412
+S + L + +++ K S D PF + K LKF +
Sbjct: 379 -------VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER-----K-------LKFSNR 419
Query: 413 YIPKGIPESDVTPKDLFMLWAPFCH 437
++P V +PF H
Sbjct: 420 FLP-------VA--------SPF-H 428
Score = 38.9 bits (90), Expect = 0.003
Identities = 34/199 (17%), Positives = 66/199 (33%), Gaps = 57/199 (28%)
Query: 278 IILSLGNFMNG----------GNRLRGQADGFGLEILPKLKDVRSKDN----SVTL---- 319
+ LS G+ + ++L+ + F +ILP+ + + D+ L
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQ---EQF-NKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 320 LHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFD-------DIHSQLSTLAKKLDAV 372
L ++ L E V + V F+ DIH+ + L ++ D
Sbjct: 65 LGYVSS---------LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 373 TISMNKVVQ---ESKPDHMEPFRTKMES----CVKTGKFKSVLKFY-QYIPKGIPESDVT 424
+ ++++ ++ PF K S V G + V F Q G +
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ----GNTD---D 168
Query: 425 P----KDLFMLWAPFCHDF 439
+DL+ + D
Sbjct: 169 YFEELRDLYQTYHVLVGDL 187
Score = 28.9 bits (64), Expect = 5.0
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 136 QQ-----KSSKVQNVARLIDSKRSQNVGI--LAQSLHIEFSEIESAIF 176
QQ + V +++ + Q + I L +SL +E E+E +F
Sbjct: 1851 QQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLE--EVEGHLF 1896
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein;
HTLV-II matrix protein, retroviral matrix protein; NMR
{Human t-lymphotropic virus 2} SCOP: a.61.1.2
Length = 137
Score = 37.6 bits (86), Expect = 0.002
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 32 PPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVL 81
P P P P P+ TT PP PPPPP PPP + TT
Sbjct: 93 VSPSAPAAPVPTPICPTTTPP-----PPPPPSPEAHVPPPYVEPTTTQCF 137
Score = 37.2 bits (85), Expect = 0.002
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 26 VQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPP 69
V+ P P P+P P T PP PPPP P PPP
Sbjct: 89 VKNQVSPSAPAAPVPTPICPTTTPPP-----PPPPSPEAHVPPP 127
Score = 29.5 bits (65), Expect = 1.1
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 24 PNVQAAPPPPPP----PPPLPPPPPMMGTTPPPMMGTPPP 59
P+ AAP P P PP PPPP PPP +
Sbjct: 95 PSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTT 134
Score = 27.5 bits (60), Expect = 5.2
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPP 59
S A P P P PPPPP P P PPP
Sbjct: 94 SPSAPAAPVPTPICPTTTPPPPP----PPSPEAHVPPP 127
>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular,
packing structure; 5.16A {Rattus norvegicus} SCOP:
i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A
Length = 1054
Score = 38.6 bits (90), Expect = 0.004
Identities = 9/43 (20%), Positives = 9/43 (20%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P PP P G P P G P
Sbjct: 435 ERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGS 477
Score = 38.6 bits (90), Expect = 0.005
Identities = 8/43 (18%), Positives = 10/43 (23%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P +P PP +G PP G
Sbjct: 429 EPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGE 471
Score = 38.2 bits (89), Expect = 0.006
Identities = 11/43 (25%), Positives = 11/43 (25%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P P P G PP P G PP P
Sbjct: 420 FPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGP 462
Score = 37.8 bits (88), Expect = 0.009
Identities = 10/44 (22%), Positives = 10/44 (22%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPM 73
P PP G P P G P P P
Sbjct: 447 PAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPP 490
Score = 36.6 bits (85), Expect = 0.017
Identities = 7/43 (16%), Positives = 8/43 (18%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P P + G G P P P
Sbjct: 423 PKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGP 465
Score = 36.6 bits (85), Expect = 0.018
Identities = 9/43 (20%), Positives = 9/43 (20%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
PP P G P P P G P
Sbjct: 456 AQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGE 498
Score = 35.9 bits (83), Expect = 0.031
Identities = 10/43 (23%), Positives = 10/43 (23%), Gaps = 2/43 (4%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P PP G PP G P P P
Sbjct: 438 VPGPPGAVGPAGKDGEAGAQGPP--GPAGPAGERGEQGPAGSP 478
Score = 35.9 bits (83), Expect = 0.033
Identities = 8/43 (18%), Positives = 8/43 (18%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P P P G P P G P
Sbjct: 417 VMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGP 459
Score = 35.9 bits (83), Expect = 0.035
Identities = 8/43 (18%), Positives = 8/43 (18%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P P G PP P G P
Sbjct: 432 KAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGP 474
Score = 34.7 bits (80), Expect = 0.070
Identities = 7/43 (16%), Positives = 7/43 (16%), Gaps = 2/43 (4%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P P G P G P P
Sbjct: 426 AAGEPGKAGERGVPGPPGAVGPA--GKDGEAGAQGPPGPAGPA 466
Score = 33.9 bits (78), Expect = 0.12
Identities = 7/44 (15%), Positives = 7/44 (15%), Gaps = 1/44 (2%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPP-MMGTPPPPPPMMGTPPPPPP 72
P G P G P P P
Sbjct: 444 AVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPA 487
Score = 33.5 bits (77), Expect = 0.17
Identities = 9/43 (20%), Positives = 9/43 (20%), Gaps = 3/43 (6%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
PP P G P G P G P
Sbjct: 441 PPGAVGPAGKDGEAGAQGPPGPA--G-PAGERGEQGPAGSPGF 480
Score = 33.2 bits (76), Expect = 0.22
Identities = 7/43 (16%), Positives = 8/43 (18%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P P G P PP +G
Sbjct: 411 ARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGE 453
Score = 32.8 bits (75), Expect = 0.24
Identities = 12/44 (27%), Positives = 14/44 (31%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPM 73
P P PP +MG P P G P PP +
Sbjct: 402 RPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAV 445
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B*
1deq_B 2a45_H*
Length = 461
Score = 38.1 bits (88), Expect = 0.005
Identities = 25/207 (12%), Positives = 58/207 (28%), Gaps = 16/207 (7%)
Query: 34 PPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWTRLIVSP 93
P P PPP+ G P P G H L P
Sbjct: 25 EAPSLRPAPPPISGGGYR---ARPAKAAATQKKVERKAPDAGGCLHADPD--LGVLC--P 77
Query: 94 EIPSDTTPLWKELEEVP--INNLEEFTELFSRQVTAQRPVTRKRQQKSSKVQN-VARLID 150
L ++ + ++ L E S+ ++ + K Q V +
Sbjct: 78 TGCQLQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNEN 137
Query: 151 SKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEAL--QQIYDVRATDEEINLIRAHL 208
+ + L+I+ + N+ ++ L ++ ++ + +++ +
Sbjct: 138 VVNEYSSELEKHQLYIDETVNS----NIPTNLRVLRSILENLRSKIQKLESDVSAQMEYC 193
Query: 209 ASNSDLQLDKPEQFLADLADIPHFSER 235
+ + + P + +I
Sbjct: 194 RTPCTVSCNIPVVSGKECEEIIRKGGE 220
Score = 33.9 bits (77), Expect = 0.10
Identities = 30/200 (15%), Positives = 60/200 (30%), Gaps = 25/200 (12%)
Query: 2 EYMDKRAKR--RKKKETYSNIFSLPNVQAAPPP------PPPPPPLPPPPPMMGTTPPPM 53
+ R R KK+E P+++ APPP P P
Sbjct: 9 GFFSARGHRPLDKKREEA------PSLRPAPPPISGGGYRARPAK-AAATQKKVERKAPD 61
Query: 54 MGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPINN 113
G P +G P T + L + + + + + + ++
Sbjct: 62 AGGCLHADPDLGVLCP------TGCQLQEALLQQERPIRNSV-DELNNNVEAVSQTSSSS 114
Query: 114 LEEFTELFSRQVTAQRPVTRKR---QQKSSKVQNVARLIDSKRSQNVGILAQSLHIEFSE 170
+ L Q+ V + SS+++ ID + N+ + L
Sbjct: 115 FQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSILEN 174
Query: 171 IESAIFNMDASVVSLEALQQ 190
+ S I +++ V + +
Sbjct: 175 LRSKIQKLESDVSAQMEYCR 194
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein,
hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Length = 138
Score = 36.5 bits (84), Expect = 0.005
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 14/47 (29%)
Query: 25 NVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPP 71
NV AA PPP PP + PPP+M PPP P
Sbjct: 105 NVVAANATVSMPPPSSSPP------------SSVMPPPVM--PPPSP 137
Score = 32.7 bits (74), Expect = 0.083
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 19 NIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPP 51
N+ + + PPP PP PPP+M P
Sbjct: 105 NVVAANATVSMPPPSSSPPSSVMPPPVMPPPSP 137
Score = 31.5 bits (71), Expect = 0.23
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPP 52
N + PPP PP PP + P P
Sbjct: 109 ANATVSMPPPSSSPPSSVMPPPVMPPPSP 137
Score = 28.1 bits (62), Expect = 3.0
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 8/39 (20%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPP 61
+ PPP P PPP+ PPP P
Sbjct: 107 VAANATVSMPPPSSSPPSSVM------PPPV--MPPPSP 137
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 38.4 bits (89), Expect = 0.005
Identities = 16/98 (16%), Positives = 23/98 (23%), Gaps = 2/98 (2%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
N A P PP P P P TPP P T + +
Sbjct: 20 ANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATLREHLRDIKA 79
Query: 84 LY--WTRLIVSPEIPSDTTPLWKELEEVPINNLEEFTE 119
+ P + + + +TE
Sbjct: 80 ENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTE 117
Score = 37.2 bits (86), Expect = 0.011
Identities = 16/56 (28%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
P V AA P P PP +G P P TPP P T
Sbjct: 11 PGVAAATQAANGGPATPAPPA-LGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAA 65
Score = 36.5 bits (84), Expect = 0.019
Identities = 14/73 (19%), Positives = 16/73 (21%), Gaps = 4/73 (5%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWTR 88
A P P P + P TP PP P P P P
Sbjct: 3 AAPTSPGTPGVAAATQAANGGPA----TPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAG 58
Query: 89 LIVSPEIPSDTTP 101
+ T
Sbjct: 59 DNATVAAGHATLR 71
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
PDB: 1pd0_A 1pd1_A
Length = 810
Score = 38.1 bits (87), Expect = 0.006
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 28 AAPPPPPPPPPLPPPP-PMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
AAP P + PM P ++ PPP + PPPP + V
Sbjct: 1 AAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSE 57
Score = 32.7 bits (73), Expect = 0.28
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 27 QAAPPPPPPPPPLPPPPP--MMGTTPPPMMGTPPPPPPMMGTPP 68
Q + P+ P ++ PPP+ PPPP++ P
Sbjct: 7 QPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPE 50
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 37.9 bits (88), Expect = 0.007
Identities = 6/88 (6%), Positives = 10/88 (11%), Gaps = 4/88 (4%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTT----PPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLG 82
P P P G + + +
Sbjct: 334 DTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVDPTD 393
Query: 83 PLYWTRLIVSPEIPSDTTPLWKELEEVP 110
P T +
Sbjct: 394 VAASVLQATVLSQPVQTLDSLRAARHGA 421
Score = 34.1 bits (78), Expect = 0.10
Identities = 3/48 (6%), Positives = 7/48 (14%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPP 71
+ +P L + + P
Sbjct: 342 LSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLV 389
Score = 33.7 bits (77), Expect = 0.15
Identities = 5/55 (9%), Positives = 10/55 (18%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
P + P + + + T P + T
Sbjct: 340 PGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVDPTDV 394
Score = 31.4 bits (71), Expect = 0.79
Identities = 5/57 (8%), Positives = 9/57 (15%), Gaps = 1/57 (1%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPP-MMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
+P P +P G T + +
Sbjct: 326 VLREVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVT 382
Score = 28.3 bits (63), Expect = 7.1
Identities = 12/102 (11%), Positives = 16/102 (15%), Gaps = 27/102 (26%)
Query: 27 QAAPPPPPPPPPLPPPPPM---------------------MGT------TPPPMMGTPPP 59
+ P P L M T P
Sbjct: 279 RYVDGLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREVVAQDTGVP 338
Query: 60 PPPMMGTPPPPPPMMGTTPHVLGPLYWTRLIVSPEIPSDTTP 101
P + P G V + V E +
Sbjct: 339 RPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEI 380
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 37.6 bits (85), Expect = 0.008
Identities = 14/61 (22%), Positives = 15/61 (24%), Gaps = 1/61 (1%)
Query: 21 FSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPP-PMMGTTPH 79
+SL A P P PP P T P P P P T
Sbjct: 432 YSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLE 491
Query: 80 V 80
Sbjct: 492 H 492
Score = 34.5 bits (77), Expect = 0.074
Identities = 13/50 (26%), Positives = 15/50 (30%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
P PP+ P P T P P P P PP + H
Sbjct: 446 VTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHHHH 495
Score = 32.2 bits (71), Expect = 0.44
Identities = 13/92 (14%), Positives = 23/92 (25%)
Query: 19 NIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
N ++ A P P+ P P + + + P
Sbjct: 396 NYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPV 455
Query: 79 HVLGPLYWTRLIVSPEIPSDTTPLWKELEEVP 110
P T P P+ P +++ P
Sbjct: 456 KPTAPTKPTYETEKPLKPAPVAPNYEKEPTPP 487
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 36.6 bits (83), Expect = 0.010
Identities = 16/74 (21%), Positives = 20/74 (27%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWT 87
+P P P P G TP + P PPPP + +
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 88 RLIVSPEIPSDTTP 101
S TTP
Sbjct: 62 FEDTFVPEISVTTP 75
Score = 35.4 bits (80), Expect = 0.024
Identities = 13/84 (15%), Positives = 24/84 (28%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYW 86
+ P P P + +P + PP PPP TP
Sbjct: 9 EIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVP 68
Query: 87 TRLIVSPEIPSDTTPLWKELEEVP 110
+ +P P++ + + +
Sbjct: 69 EISVTTPSQPAEASEVAGGTQPAA 92
Score = 35.1 bits (79), Expect = 0.032
Identities = 12/78 (15%), Positives = 20/78 (25%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P+ PP PPPP P + + P + TP P
Sbjct: 32 PSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPA 91
Query: 84 LYWTRLIVSPEIPSDTTP 101
+ + ++
Sbjct: 92 AGAQEPGETAASEAASSS 109
Score = 31.2 bits (69), Expect = 0.59
Identities = 7/49 (14%), Positives = 11/49 (22%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
+ +P PP+PPPP +
Sbjct: 26 ATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTT 74
Score = 30.8 bits (68), Expect = 0.66
Identities = 9/49 (18%), Positives = 9/49 (18%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P P P P PPP TP
Sbjct: 16 PEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFED 64
Score = 30.4 bits (67), Expect = 1.0
Identities = 10/60 (16%), Positives = 12/60 (20%)
Query: 13 KKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
K+ I SL P P P + P G P
Sbjct: 51 KEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSL 110
Score = 30.0 bits (66), Expect = 1.3
Identities = 10/93 (10%), Positives = 19/93 (20%)
Query: 13 KKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
K + + P + P + P G
Sbjct: 46 KHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEA 105
Query: 73 MMGTTPHVLGPLYWTRLIVSPEIPSDTTPLWKE 105
+ P V+ + + + E S L
Sbjct: 106 ASSSLPAVVVETFPATVNGTVEGGSGAGRLDLP 138
Score = 29.3 bits (64), Expect = 1.9
Identities = 15/92 (16%), Positives = 19/92 (20%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVL 81
S PPPP P + P P + G T
Sbjct: 33 SQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAA 92
Query: 82 GPLYWTRLIVSPEIPSDTTPLWKELEEVPINN 113
G S S + E +N
Sbjct: 93 GAQEPGETAASEAASSSLPAVVVETFPATVNG 124
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 37.1 bits (85), Expect = 0.010
Identities = 15/48 (31%), Positives = 16/48 (33%)
Query: 25 NVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
N+ A P P P P PM T P P TPP P
Sbjct: 302 NINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
Score = 31.7 bits (71), Expect = 0.52
Identities = 7/48 (14%), Positives = 11/48 (22%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPP 69
++ + P P P P P + P P
Sbjct: 302 NINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
Score = 30.5 bits (68), Expect = 1.1
Identities = 13/54 (24%), Positives = 15/54 (27%), Gaps = 4/54 (7%)
Query: 25 NVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
N P P P P T P P P P+ + P TP
Sbjct: 300 NSNINAIGVPTKPVAPTAP----TQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics;
5.00A {Barmah forest virus}
Length = 253
Score = 36.1 bits (83), Expect = 0.016
Identities = 6/45 (13%), Positives = 9/45 (20%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P P PP PP + ++
Sbjct: 19 VQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQ 63
Score = 35.8 bits (82), Expect = 0.019
Identities = 8/49 (16%), Positives = 10/49 (20%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P Q PP P + + PPP
Sbjct: 24 PQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPP 72
Score = 35.8 bits (82), Expect = 0.022
Identities = 14/66 (21%), Positives = 16/66 (24%), Gaps = 8/66 (12%)
Query: 21 FSLPNVQAAPPPPPPPPPLPPPPPM--------MGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P + P P PP PP P +G PPP P
Sbjct: 15 RPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKP 74
Query: 73 MMGTTP 78
P
Sbjct: 75 KKTQKP 80
Score = 33.8 bits (77), Expect = 0.093
Identities = 8/52 (15%), Positives = 14/52 (26%)
Query: 11 RKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPP 62
+ ++ + + +L P PPP T P T
Sbjct: 39 SQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSK 90
Score = 31.1 bits (70), Expect = 0.66
Identities = 9/51 (17%), Positives = 10/51 (19%)
Query: 33 PPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P P P P PP G + L P
Sbjct: 5 PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQP 55
Score = 30.4 bits (68), Expect = 1.1
Identities = 8/44 (18%), Positives = 9/44 (20%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTP 67
P + P PP P P P M
Sbjct: 55 PKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNC 98
Score = 30.4 bits (68), Expect = 1.1
Identities = 8/46 (17%), Positives = 10/46 (21%)
Query: 31 PPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGT 76
P P P+ P P PP +G
Sbjct: 5 PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGA 50
Score = 30.0 bits (67), Expect = 1.3
Identities = 5/50 (10%), Positives = 6/50 (12%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
P P P P P +
Sbjct: 4 IPTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALAL 53
Score = 30.0 bits (67), Expect = 1.3
Identities = 7/43 (16%), Positives = 9/43 (20%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P P +P P P +G P
Sbjct: 14 WRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPK 56
Score = 28.8 bits (64), Expect = 3.6
Identities = 14/76 (18%), Positives = 16/76 (21%), Gaps = 21/76 (27%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMG---------------------TPPPPPP 62
P P P PP P + TPPP P
Sbjct: 16 PAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPK 75
Query: 63 MMGTPPPPPPMMGTTP 78
P P + P
Sbjct: 76 KTQKPKKPTQKKKSKP 91
Score = 28.4 bits (63), Expect = 4.8
Identities = 9/68 (13%), Positives = 11/68 (16%), Gaps = 18/68 (26%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMMGTTPPP------------------MMGTPPPPPPMM 64
+P P P P PP +
Sbjct: 4 IPTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQ 63
Query: 65 GTPPPPPP 72
P PP
Sbjct: 64 KKPKKTPP 71
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 36.0 bits (84), Expect = 0.018
Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P PP P P P T+ P++ P P G PP +
Sbjct: 2 PQLPPAPDDYPTFPD---TSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPA 52
Score = 35.6 bits (83), Expect = 0.024
Identities = 15/58 (25%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP-HV 80
P + AP P P P + P G P PP P P HV
Sbjct: 2 PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLPNHV 59
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 35.6 bits (81), Expect = 0.021
Identities = 12/62 (19%), Positives = 18/62 (29%)
Query: 11 RKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPP 70
+ ++ + + +L QA P P P P P PP P
Sbjct: 40 SQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTK 99
Query: 71 PP 72
P
Sbjct: 100 PG 101
Score = 34.0 bits (77), Expect = 0.078
Identities = 9/54 (16%), Positives = 10/54 (18%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHV 80
P P P PP P P P P +
Sbjct: 57 ATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKL 110
Score = 33.2 bits (75), Expect = 0.15
Identities = 14/71 (19%), Positives = 17/71 (23%), Gaps = 15/71 (21%)
Query: 17 YSNIFSLPNVQAAPPPPPPPPPLPPPPPM---------------MGTTPPPMMGTPPPPP 61
F P P P+P + +G P P PPP
Sbjct: 10 GRRPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPP 69
Query: 62 PMMGTPPPPPP 72
P PP
Sbjct: 70 RQKKQAPKQPP 80
Score = 28.6 bits (63), Expect = 3.4
Identities = 4/49 (8%), Positives = 4/49 (8%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P P P P
Sbjct: 64 RPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEA 112
Score = 28.6 bits (63), Expect = 3.5
Identities = 9/52 (17%), Positives = 9/52 (17%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVL 81
PP P PP P P P V
Sbjct: 68 PPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVK 119
Score = 27.5 bits (60), Expect = 8.3
Identities = 10/59 (16%), Positives = 14/59 (23%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLG 82
P + P PP P P P P + + V+G
Sbjct: 69 PRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDGDVIG 127
>2wsc_E PSAE, PSI-E A, photosystem I reaction center subunit IV A,
chloroplastic; photosynthesis, electron transfer,
membrane proteins, large complexes; HET: CL1 PQN BCR
LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB:
2wse_E* 2wsf_E* 2o01_E* 3lw5_E*
Length = 143
Score = 34.6 bits (78), Expect = 0.022
Identities = 11/38 (28%), Positives = 12/38 (31%)
Query: 26 VQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPM 63
V A P P P P T P PPP+
Sbjct: 42 VVRAAEDPAPASSSSKDSPAAAAAPDGATATKPKPPPI 79
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 36.5 bits (84), Expect = 0.022
Identities = 10/48 (20%), Positives = 12/48 (25%)
Query: 25 NVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
++ P P P P P P P P P P
Sbjct: 94 PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQ 141
Score = 36.1 bits (83), Expect = 0.032
Identities = 16/79 (20%), Positives = 20/79 (25%), Gaps = 3/79 (3%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P P P P P P P P G P T V+
Sbjct: 94 PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATDVIRA 153
Query: 84 L--YWTRLIVSPEIPSDTT 100
L + ++ EIP
Sbjct: 154 LVAQKLKKELT-EIPPSKA 171
Score = 33.8 bits (77), Expect = 0.15
Identities = 8/47 (17%), Positives = 9/47 (19%)
Query: 26 VQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
+ P P P P P P P P
Sbjct: 88 IYYDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASA 134
Score = 32.2 bits (73), Expect = 0.42
Identities = 9/53 (16%), Positives = 10/53 (18%)
Query: 20 IFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
I+ P P P P P P P P
Sbjct: 88 IYYDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPV 140
Score = 29.1 bits (65), Expect = 4.0
Identities = 9/52 (17%), Positives = 13/52 (25%)
Query: 1 MEYMDKRAKRRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPP 52
+ + S+ + P A P P P P P P
Sbjct: 90 YDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQ 141
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 36.1 bits (82), Expect = 0.022
Identities = 9/46 (19%), Positives = 11/46 (23%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
+ A P PP M PPP + P
Sbjct: 1 EQAKAQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQ 46
Score = 35.7 bits (81), Expect = 0.028
Identities = 6/49 (12%), Positives = 7/49 (14%)
Query: 31 PPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
P P PPP P +
Sbjct: 3 AKAQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCT 51
Score = 34.2 bits (77), Expect = 0.075
Identities = 7/47 (14%), Positives = 9/47 (19%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPP 70
P + PP M PP P +
Sbjct: 6 QLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTG 52
Score = 32.2 bits (72), Expect = 0.30
Identities = 7/43 (16%), Positives = 8/43 (18%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPP 71
P PP + PPP T
Sbjct: 10 GYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTG 52
Score = 29.2 bits (64), Expect = 2.6
Identities = 11/46 (23%), Positives = 14/46 (30%)
Query: 17 YSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPP 62
SN ++ PNV A+ PP PPP
Sbjct: 7 LSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTG 52
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 36.5 bits (84), Expect = 0.022
Identities = 15/87 (17%), Positives = 21/87 (24%), Gaps = 8/87 (9%)
Query: 16 TYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMG 75
T + A P P P P P P P P+
Sbjct: 91 TPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAP---VAAAAPAAAAAEIADEPV-- 145
Query: 76 TTPHVLGPL--YWTRLIVSPEIPSDTT 100
+L L + + + IP T
Sbjct: 146 KASLLLHVLVAHKLKKSLD-SIPMSKT 171
Score = 34.2 bits (78), Expect = 0.12
Identities = 9/53 (16%), Positives = 12/53 (22%)
Query: 20 IFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
I+ P+ P P P + P P P P
Sbjct: 88 IYYTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEI 140
Score = 33.4 bits (76), Expect = 0.16
Identities = 9/60 (15%), Positives = 11/60 (18%), Gaps = 1/60 (1%)
Query: 11 RKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPP 70
+ KE Y + A P P P P P
Sbjct: 83 KDAKEIYYT-PDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIA 141
Score = 31.1 bits (70), Expect = 0.97
Identities = 6/52 (11%), Positives = 10/52 (19%)
Query: 1 MEYMDKRAKRRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPP 52
+++ P A P P P+ P
Sbjct: 90 YTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIA 141
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair,
endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens}
SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Length = 318
Score = 35.4 bits (82), Expect = 0.034
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 4 MDKRAKRRKKKETYSNIFSLPNV-QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPP 62
M KR K+ E + + P ++ P + PP +P P
Sbjct: 1 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA 60
Query: 63 MM 64
+
Sbjct: 61 TL 62
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 35.3 bits (82), Expect = 0.038
Identities = 5/53 (9%), Positives = 8/53 (15%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHV 80
+ + P P P + P V
Sbjct: 83 NMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSV 135
Score = 34.1 bits (79), Expect = 0.087
Identities = 1/53 (1%), Positives = 1/53 (1%), Gaps = 2/53 (3%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHV 80
T
Sbjct: 81 YENMTFKGQEQEEAKKEEKTETVSK--EEKVDAVAPNAPAAEAEAGPNRRVIA 131
Score = 32.6 bits (75), Expect = 0.23
Identities = 1/49 (2%), Positives = 1/49 (2%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P
Sbjct: 85 TFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMP 133
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide
repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A
{Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3
b.26.1.2 PDB: 2fez_A*
Length = 388
Score = 35.1 bits (81), Expect = 0.040
Identities = 4/65 (6%), Positives = 12/65 (18%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWT 87
P + M + + +G L+
Sbjct: 257 QQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHDN 316
Query: 88 RLIVS 92
+++
Sbjct: 317 DIVLD 321
Score = 32.4 bits (74), Expect = 0.31
Identities = 3/49 (6%), Positives = 6/49 (12%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P + + + G P
Sbjct: 259 PLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAA 307
Score = 29.7 bits (67), Expect = 1.8
Identities = 2/45 (4%), Positives = 5/45 (11%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P + M + +
Sbjct: 256 RQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRG 300
Score = 28.5 bits (64), Expect = 5.3
Identities = 3/41 (7%), Positives = 4/41 (9%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPP 62
A L G +
Sbjct: 260 LDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRG 300
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 35.0 bits (80), Expect = 0.041
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMM 74
SL Q P P P ++P +MG +P P ++
Sbjct: 65 SLQGYQTYGHFPSRAIKSEYPDPYT-SSPESIMGYSYMDSYQTSSPASIPHLI 116
Score = 32.3 bits (73), Expect = 0.31
Identities = 11/69 (15%), Positives = 16/69 (23%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P V + PP G P + + P P + P
Sbjct: 50 PFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSP 109
Query: 84 LYWTRLIVS 92
LI+
Sbjct: 110 ASIPHLILE 118
Score = 30.7 bits (69), Expect = 0.92
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 17 YSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGT---TPPPMMGTPPPPPPMMGTPPPPPP 72
+ ++ N+ +A P PP + T P M PP P
Sbjct: 18 LTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFP 76
Score = 30.3 bits (68), Expect = 1.1
Identities = 8/63 (12%), Positives = 14/63 (22%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVL 81
S+ P + P P +P + PH++
Sbjct: 57 SMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLI 116
Query: 82 GPL 84
L
Sbjct: 117 LEL 119
Score = 28.4 bits (63), Expect = 5.0
Identities = 10/51 (19%), Positives = 11/51 (21%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
+LP P P PP G P P P
Sbjct: 40 ALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTS 90
Score = 28.0 bits (62), Expect = 7.6
Identities = 12/82 (14%), Positives = 16/82 (19%), Gaps = 6/82 (7%)
Query: 26 VQAAPPPPPPPPPLPPPPPMMGTTPPP----MMGTPPPPPPMMGTPP--PPPPMMGTTPH 79
++A P + + PP P P M PH
Sbjct: 4 LEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPH 63
Query: 80 VLGPLYWTRLIVSPEIPSDTTP 101
Y T P
Sbjct: 64 GSLQGYQTYGHFPSRAIKSEYP 85
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 34.1 bits (77), Expect = 0.049
Identities = 11/48 (22%), Positives = 12/48 (25%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTT 77
PPPP P P P P T + P P
Sbjct: 23 PPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNHSEP 70
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 34.9 bits (79), Expect = 0.056
Identities = 5/66 (7%), Positives = 9/66 (13%), Gaps = 2/66 (3%)
Query: 15 ETYSNIFSLPNVQAAP--PPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
N++ A P G +
Sbjct: 12 HQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATA 71
Query: 73 MMGTTP 78
+P
Sbjct: 72 SETASP 77
Score = 33.0 bits (74), Expect = 0.22
Identities = 8/96 (8%), Positives = 15/96 (15%), Gaps = 10/96 (10%)
Query: 15 ETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMM 74
+ + L N+ P ++ T G +
Sbjct: 6 HHHGHHHQLENLYFQGEETAVPENSGANTELVSGESEH--STNEADKQNEGEHARENKLE 63
Query: 75 GTTPHVLGPLYWTRLIVSPEIPSDTTPLWKELEEVP 110
P+ E E
Sbjct: 64 KAEGVATAS--------ETASPASNEAATTETAEAA 91
Score = 30.3 bits (67), Expect = 1.7
Identities = 3/49 (6%), Positives = 4/49 (8%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
N +P P
Sbjct: 51 QNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEK 99
>3m1c_B GL, envelope glycoprotein L; glycoprotein H, GH/GL, envelope
protein, HER simplex virus, disulfide bond, HOST cell
MEMB HOST endosome; HET: NAG XYL; 3.00A {Human
herpesvirus 2}
Length = 204
Score = 33.8 bits (76), Expect = 0.066
Identities = 12/65 (18%), Positives = 15/65 (23%), Gaps = 2/65 (3%)
Query: 17 YSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPP--PPPMM 74
YS + P PP + PP + PP P
Sbjct: 134 YSRTRRCVGRRDLRPANTTSTWEPPVSSDDEASSQSKPLATQPPVLALSNAPPRRVSPTR 193
Query: 75 GTTPH 79
G H
Sbjct: 194 GRRRH 198
Score = 28.1 bits (61), Expect = 4.7
Identities = 8/45 (17%), Positives = 10/45 (22%), Gaps = 2/45 (4%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPP--PPPMMGTPPPPPP 72
PP P+ P + PP P G
Sbjct: 157 PPVSSDDEASSQSKPLATQPPVLALSNAPPRRVSPTRGRRRHTRL 201
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281,
apoptosis, membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 32.7 bits (74), Expect = 0.077
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 4/55 (7%)
Query: 18 SNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
+ L N+Q P PPP+P P + P G+
Sbjct: 7 GRLLDLENIQI----PDAPPPIPKEPSNYDFSGPSSGIEGRGSSGSSGSSGSSGD 57
>1eys_C Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: a.138.1.2
Length = 382
Score = 34.1 bits (77), Expect = 0.080
Identities = 10/47 (21%), Positives = 12/47 (25%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPP 70
+AAP P P P P P+ P P
Sbjct: 331 AATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPAPVEEVAPAP 377
Score = 32.9 bits (74), Expect = 0.19
Identities = 8/49 (16%), Positives = 10/49 (20%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P P P +P + P P P P
Sbjct: 329 PAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPAPVEEVAPAP 377
Score = 31.4 bits (70), Expect = 0.55
Identities = 8/57 (14%), Positives = 8/57 (14%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
L P P P T P P P
Sbjct: 307 GLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAG 363
Score = 31.4 bits (70), Expect = 0.63
Identities = 10/59 (16%), Positives = 13/59 (22%), Gaps = 2/59 (3%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPP--PMMGTPPPPPPMMGTPPPPPPMMGTTP 78
+LP A P P P + P P P+ P
Sbjct: 317 ALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPAPVEEVAP 375
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 31.3 bits (71), Expect = 0.085
Identities = 7/35 (20%), Positives = 8/35 (22%)
Query: 26 VQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPP 60
V+ L P PPPP
Sbjct: 43 VKKLDSGTGKELVLALYDYQESGDNAPSYSPPPPP 77
Score = 27.1 bits (60), Expect = 3.1
Identities = 6/33 (18%), Positives = 6/33 (18%)
Query: 38 PLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPP 70
L P PPPP
Sbjct: 45 KLDSGTGKELVLALYDYQESGDNAPSYSPPPPP 77
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel,
cold shock domain, ssDNA binding, DNA B protein; 2.80A
{Homo sapiens}
Length = 147
Score = 32.3 bits (73), Expect = 0.12
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 31 PPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPP 71
PPPPP PP + TP P P+ G P P
Sbjct: 5 PPPPPQPPTHQASVGLLDTPR---SRERSPSPLRGNVVPSP 42
Score = 31.5 bits (71), Expect = 0.28
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
PPPPP PP ++ T P P P P P
Sbjct: 5 PPPPPQPPTHQASVGLLDTPRSR---ERSPSPLRGNVVPSPLP 44
Score = 30.8 bits (69), Expect = 0.47
Identities = 11/40 (27%), Positives = 13/40 (32%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPP 61
S P PP L P +P P+ G P P
Sbjct: 3 SEPPPPPQPPTHQASVGLLDTPRSRERSPSPLRGNVVPSP 42
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 33.3 bits (76), Expect = 0.18
Identities = 13/74 (17%), Positives = 16/74 (21%), Gaps = 6/74 (8%)
Query: 21 FSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPM---MGTT 77
P PP P M P P P P + MGT
Sbjct: 186 LPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGAVLGDRLP---PVPARPEVAITMGTI 242
Query: 78 PHVLGPLYWTRLIV 91
+ I+
Sbjct: 243 ELQAFGIGAVEPII 256
Score = 31.3 bits (71), Expect = 0.73
Identities = 9/68 (13%), Positives = 14/68 (20%), Gaps = 7/68 (10%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMM-------GTTPPPMMGTPPPPPPMMGTPPPPPPMMG 75
+P VQ + + P + T PP + P
Sbjct: 152 VPAVQRNQSAWRTRGMHRSIASFLTDLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFM 211
Query: 76 TTPHVLGP 83
G
Sbjct: 212 RWVPYGGG 219
Score = 28.3 bits (63), Expect = 5.9
Identities = 9/53 (16%), Positives = 12/53 (22%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVL 81
P P PP ++ P P P + P V
Sbjct: 184 VSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGAVLGDRLPPVPARPEVA 236
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 33.2 bits (76), Expect = 0.18
Identities = 10/56 (17%), Positives = 13/56 (23%), Gaps = 6/56 (10%)
Query: 31 PPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPM---MGTTPHVLGP 83
PP P P M G P + P + GT +
Sbjct: 191 PPSMEAQPKPGTTKMRYVPYN---GRNDQVPSWVFEERKQPRLCLTFGTRVPLPNT 243
Score = 30.5 bits (69), Expect = 1.1
Identities = 10/48 (20%), Positives = 12/48 (25%), Gaps = 3/48 (6%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPM---MGTPPPPPP 72
A P P P P + P + GT P P
Sbjct: 195 EAQPKPGTTKMRYVPYNGRNDQVPSWVFEERKQPRLCLTFGTRVPLPN 242
Score = 27.8 bits (62), Expect = 9.3
Identities = 9/36 (25%), Positives = 10/36 (27%)
Query: 37 PPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P P + PP M P P M P
Sbjct: 178 TDFPDPLLSIDVCPPSMEAQPKPGTTKMRYVPYNGR 213
>2g5d_A GNA33; hydrolase, beta barrel; 1.95A {Neisseria gonorrhoeae fa
1090} SCOP: b.52.1.4 PDB: 2g6g_A
Length = 422
Score = 33.0 bits (74), Expect = 0.21
Identities = 7/37 (18%), Positives = 9/37 (24%), Gaps = 2/37 (5%)
Query: 25 NVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPP 61
++Q P P P P G P
Sbjct: 6 SIQTFPQPDTSVINGPDRPA--GIPDPAGTTVAGGGA 40
Score = 31.8 bits (71), Expect = 0.51
Identities = 8/48 (16%), Positives = 12/48 (25%)
Query: 42 PPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWTRL 89
+ T P P P G P P + V + +
Sbjct: 3 QSRSIQTFPQPDTSVINGPDRPAGIPDPAGTTVAGGGAVYTVVPHLSM 50
Score = 31.4 bits (70), Expect = 0.70
Identities = 6/34 (17%), Positives = 7/34 (20%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPP 62
P P + P P P T
Sbjct: 7 IQTFPQPDTSVINGPDRPAGIPDPAGTTVAGGGA 40
Score = 29.9 bits (66), Expect = 2.0
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPP 59
+ P + P P P P + T P
Sbjct: 9 TFPQPDTSVINGPDRPAGIPDPAGTTVAGGGAVYTVVP 46
Score = 28.7 bits (63), Expect = 4.1
Identities = 8/39 (20%), Positives = 9/39 (23%)
Query: 31 PPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPP 69
P P P P GT + T P
Sbjct: 8 QTFPQPDTSVINGPDRPAGIPDPAGTTVAGGGAVYTVVP 46
>3cjy_A Putative thioesterase; YP_496845.1, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PGE; 1.70A
{Novosphingobium aromaticivorans}
Length = 259
Score = 32.6 bits (75), Expect = 0.21
Identities = 9/49 (18%), Positives = 10/49 (20%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMG 75
A PP P P PP + G P
Sbjct: 118 WALAPPVPQPDNCPPCTTLPAQDDNARYLEGIEVREAGGPEVPSGRTRL 166
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 32.8 bits (75), Expect = 0.21
Identities = 4/46 (8%), Positives = 7/46 (15%), Gaps = 1/46 (2%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMM 74
P P ++ P P +
Sbjct: 1 GAMDPSEALQRPVASDFE-PQGLSEAARWNSKENLLAGPSENDPNL 45
Score = 32.1 bits (73), Expect = 0.36
Identities = 5/41 (12%), Positives = 10/41 (24%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMM 64
P+ P P + ++ P P +
Sbjct: 5 PSEALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNL 45
Score = 28.2 bits (63), Expect = 6.1
Identities = 3/39 (7%), Positives = 4/39 (10%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPP 62
+ P P P
Sbjct: 2 AMDPSEALQRPVASDFEPQGLSEAARWNSKENLLAGPSE 40
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate
biosynthesis, antibiotic resistance; 2.64A
{Mycobacterium tuberculosis}
Length = 318
Score = 32.6 bits (75), Expect = 0.22
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 41 PPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLG 82
PP +TPP + G PP + P+ G ++
Sbjct: 5 PPASAGRSTPPALAGHSTPPALAGHSTLCGRPVAGDRALIMA 46
Score = 29.1 bits (66), Expect = 3.1
Identities = 11/48 (22%), Positives = 14/48 (29%), Gaps = 12/48 (25%)
Query: 32 PPPPPPPLPPPPPMMGTTPPPMMGTPPPP--------PPMMG----TP 67
PP PP +TPP + G +M TP
Sbjct: 5 PPASAGRSTPPALAGHSTPPALAGHSTLCGRPVAGDRALIMAIVNRTP 52
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 33.1 bits (75), Expect = 0.22
Identities = 12/63 (19%), Positives = 17/63 (26%)
Query: 16 TYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMG 75
Y + + + P P P G T P + P P P
Sbjct: 1521 DYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSP 1580
Query: 76 TTP 78
T+P
Sbjct: 1581 TSP 1583
Score = 30.8 bits (69), Expect = 1.2
Identities = 11/58 (18%), Positives = 14/58 (24%)
Query: 21 FSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
F + A P P P T P P P M ++P
Sbjct: 1519 FGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSP 1576
Score = 28.5 bits (63), Expect = 5.4
Identities = 12/48 (25%), Positives = 15/48 (31%)
Query: 32 PPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
P P P P T+P +P P P P T+P
Sbjct: 1656 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1703
>1z70_X C-alpha-formyglycine-generating enzyme; formylglycine, multiple
sulfatase deficiency, cysteine sulfe oxidoreductase;
HET: OCS NAG CXS; 1.15A {Homo sapiens} SCOP: d.169.1.7
PDB: 1y1f_X* 1y1e_X* 1y1h_X* 1y1i_X* 1y1g_X* 1y1j_X*
2aii_X* 2aij_X* 2aft_X* 2aik_X* 2hi8_X* 2hib_X* 2afy_X*
Length = 311
Score = 32.5 bits (74), Expect = 0.22
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 7/41 (17%)
Query: 27 QAAPPPPPPPPPLPPPPPMM----GTTPPPMMGTPPPPPPM 63
+A P P P M+ G MGT P
Sbjct: 1 EANAPGPVPGERQLAHSKMVPIPAGVF---TMGTDDPQIKQ 38
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 32.7 bits (75), Expect = 0.26
Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMG 75
+LP V +A PP P P G P P P ++G
Sbjct: 528 ALPTVTSAGASLLPPEDNSQASP---VPPADNSGAPTEPSAGDSEVAQMPVVIG 578
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 32.5 bits (74), Expect = 0.27
Identities = 8/76 (10%), Positives = 17/76 (22%), Gaps = 5/76 (6%)
Query: 21 FSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPP-PPPPMMGTPPPPPPM---MGT 76
F V P P + + + P P + P + +G
Sbjct: 217 FDEEVVVGQWTIDPAPAAIRLDTGLKTVGMRYVDYNGPSVVPEWLHDEPERRRVCLTLGI 276
Query: 77 T-PHVLGPLYWTRLIV 91
+ ++
Sbjct: 277 SSRENSIGQVSIEELL 292
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain,
kinase substrate, GARA, FHA, cytoplasm, phosphoprotein;
HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Length = 143
Score = 31.4 bits (71), Expect = 0.28
Identities = 7/60 (11%), Positives = 13/60 (21%), Gaps = 2/60 (3%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLG 82
+ + P P + + GT P P ++ G
Sbjct: 1 MSDNNGTPEPQVETTSVFRADLLKEMESST--GTAPASTGAENLPAGSALLVVKRGPNAG 58
>3s8f_A Cytochrome C oxidase subunit 1; complex IV, respiratory chain,
lipid cubic phase, monoolein, peroxide, electron
transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus
thermophilus} PDB: 3s8g_A* 1xme_A* 3qjq_A* 3qjr_A*
3qju_A* 3qjv_A* 4esl_A* 3qjs_A* 2qpd_A* 3bvd_A* 2qpe_A*
3qjt_A* 1ehk_A* 3eh5_A* 3eh3_A* 3eh4_A*
Length = 569
Score = 32.8 bits (75), Expect = 0.28
Identities = 9/67 (13%), Positives = 15/67 (22%), Gaps = 1/67 (1%)
Query: 9 KRRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPP-PMMGTPPPPPPMMGTP 67
R +K E V + P + ++ P + G
Sbjct: 501 SRERKPELAEAPLPFAEVISGPEDRRLVLAMDRIGFWFAVAAILVVLAYGPTLVQLFGHL 560
Query: 68 PPPPPMM 74
P P
Sbjct: 561 NPVPGWR 567
>2gj7_F Glycoprotein E; FC receptor, low resolution, immune
system-virus-viral prote complex; HET: NAG BMA MAN GAL
FUC; 5.00A {Human herpesvirus 1} SCOP: b.1.1.1
Length = 401
Score = 32.3 bits (72), Expect = 0.29
Identities = 12/59 (20%), Positives = 15/59 (25%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWTR 88
P P P PP P + P PPPP + + R
Sbjct: 142 QPAPVPTPPPTPADYDEDDNDEGEDESLAGTPASGTPRLPPPPAPPRSWPSAPEVSHVR 200
Score = 32.0 bits (71), Expect = 0.40
Identities = 14/78 (17%), Positives = 19/78 (24%)
Query: 5 DKRAKRRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMM 64
K ++ + P PPP P + + P P
Sbjct: 124 VGDIKDPARQVASVVLVVQPAPVPTPPPTPADYDEDDNDEGEDESLAGTPASGTPRLPPP 183
Query: 65 GTPPPPPPMMGTTPHVLG 82
PP P HV G
Sbjct: 184 PAPPRSWPSAPEVSHVRG 201
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation;
1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Length = 333
Score = 32.4 bits (73), Expect = 0.29
Identities = 10/60 (16%), Positives = 13/60 (21%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVL 81
S +V P P + P G P P P V+
Sbjct: 274 STGSVLWHNNSSTPQIQFRDLPGAHPSPTPSNAGIPTTLTNTSSAPNFANSTFRFPPRVV 333
>3rqb_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, alpha-beta sandwich;
HET: MSE; 2.80A {Alicyclobacillus acidocaldarius subsp}
Length = 275
Score = 32.1 bits (73), Expect = 0.31
Identities = 10/56 (17%), Positives = 13/56 (23%), Gaps = 5/56 (8%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGT--PPPPPPMMGTPPPPPPMMG 75
S + +A P PPP +P P P M
Sbjct: 118 SWSHTEAVMPDVPPPADVPRFVAPA---PLPWMQWYHVRLIRGSAFDEVQDATTYQ 170
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv
T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A
{Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Length = 451
Score = 32.2 bits (73), Expect = 0.31
Identities = 8/87 (9%), Positives = 17/87 (19%), Gaps = 2/87 (2%)
Query: 18 SNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTT 77
+ P + P T P + G P
Sbjct: 173 KACRNDPFTEEEMTAMNLDRKTIVPYLENYTIGPEVDHQIVKADVAGGDAVLTPVSASWA 232
Query: 78 PHVLGP--LYWTRLIVSPEIPSDTTPL 102
P + + + + + T +
Sbjct: 233 FFTFSPKAMSELKDAATKTLDASTKFV 259
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 32.0 bits (73), Expect = 0.42
Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 3/58 (5%)
Query: 31 PPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPM---MGTTPHVLGPLY 85
PP P P P P P + P + +GT+ +
Sbjct: 203 PPSLQEPEFRARPRRHELRPVPFAEQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVL 260
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 32.0 bits (72), Expect = 0.48
Identities = 13/56 (23%), Positives = 14/56 (25%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPL 84
A P P P T P T P P + P P T P
Sbjct: 1525 AYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1580
Score = 32.0 bits (72), Expect = 0.51
Identities = 14/54 (25%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMM-GTPPPPPPMMGTTPH 79
+P P P P P T P T P P P P T+P
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1681
Score = 32.0 bits (72), Expect = 0.56
Identities = 10/53 (18%), Positives = 11/53 (20%)
Query: 31 PPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P T P + P P T P P T P
Sbjct: 1513 GADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSP 1565
Score = 30.8 bits (69), Expect = 1.3
Identities = 14/53 (26%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPP-PPPMMGTPPPPPPMMGTTPH 79
+P P P P P T P T P P P P T+P
Sbjct: 1636 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1688
Score = 30.1 bits (67), Expect = 1.9
Identities = 6/54 (11%), Positives = 9/54 (16%)
Query: 26 VQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
+ + G P G P T+P
Sbjct: 1495 LVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPT 1548
Score = 29.3 bits (65), Expect = 3.6
Identities = 15/59 (25%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPP-PPPMMGTTPH 79
S +P P P P P T P T P P + P P T+P
Sbjct: 1588 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1646
Score = 29.3 bits (65), Expect = 3.6
Identities = 13/50 (26%), Positives = 14/50 (28%)
Query: 34 PPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P P P P T P T P P + P P T P
Sbjct: 1621 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSP 1670
Score = 28.9 bits (64), Expect = 5.1
Identities = 19/74 (25%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWT 87
++P P P P P T P T P P + P P T P +
Sbjct: 1538 SSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1597
Query: 88 RLIVSPEIPSDTTP 101
SP S T+P
Sbjct: 1598 YSPTSPS-YSPTSP 1610
Score = 28.5 bits (63), Expect = 6.0
Identities = 14/52 (26%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGT-PPPPPPMMGTTP 78
+P P P P P T P T P P P P T+P
Sbjct: 1622 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSP 1673
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic;
2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Length = 511
Score = 31.6 bits (70), Expect = 0.58
Identities = 25/174 (14%), Positives = 50/174 (28%), Gaps = 11/174 (6%)
Query: 22 SLPNVQAAPPPPPPPP----PLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTT 77
++P V A P P P P+ P ++ P+ P + +
Sbjct: 191 TVPVVDAVPVPDRSRPGTNIKDVYSAPVSPNLPDLVLSVGQMNTPVRSNPEIQEDGVISE 250
Query: 78 PHVLGPLYWT-------RLIVSPEIPSDTTPLWKELEEVPINNLEEFTELFSRQVTAQRP 130
+T ++ PE + +E + N+L + E + R
Sbjct: 251 TGNYVEAGYTMSSNNHDVIVRFPEGSGVSPLYISAVEILDSNSLSQRQEAENNAKDDFRV 310
Query: 131 VTRKRQQKSSKVQNVARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVS 184
+ + + + + +I S + L EI I N +
Sbjct: 311 KKEQENDEKTVLTKTSEVIISVGDKVGEYLGDKYKALSREIAENINNFQGKTIR 364
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine
oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN;
2.45A {Emericella nidulans}
Length = 797
Score = 31.8 bits (71), Expect = 0.58
Identities = 9/67 (13%), Positives = 15/67 (22%), Gaps = 11/67 (16%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTP--------PPPPPMMGTP---PPPPPMMGTT 77
A P + ++G P +P PP +
Sbjct: 5 ATKLDPSRDLVRQKSRGRKNQMRSLVGRSNQHITHQSRPYTNEYASPCQITPPQEIKAPK 64
Query: 78 PHVLGPL 84
+V L
Sbjct: 65 ENVWYGL 71
Score = 28.4 bits (62), Expect = 6.8
Identities = 11/55 (20%), Positives = 15/55 (27%), Gaps = 3/55 (5%)
Query: 7 RAKRRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPP 61
R K R +K ++ N P P TPP + P
Sbjct: 16 RQKSRGRKNQMRSLVGRSNQHITHQSRPYTNEYASPCQ---ITPPQEIKAPKENV 67
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 31.6 bits (72), Expect = 0.61
Identities = 13/68 (19%), Positives = 22/68 (32%)
Query: 5 DKRAKRRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMM 64
D+R + + K+ +L + PPP PPP P ++ P +
Sbjct: 4 DRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFVD 63
Query: 65 GTPPPPPP 72
P
Sbjct: 64 TAVEGTLP 71
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer,
oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas
putida} SCOP: a.3.1.6 b.70.1.1
Length = 668
Score = 31.5 bits (71), Expect = 0.63
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 21 FSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMM 54
F+L PPP P P + P + P +
Sbjct: 548 FALDGKAQLPPPAPAPAKVERVPQPVTAAPEQVQ 581
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta
barrel, alpha helix, beta flaps, structural protein;
2.49A {Acetivibrio cellulolyticus}
Length = 227
Score = 31.0 bits (69), Expect = 0.65
Identities = 10/40 (25%), Positives = 10/40 (25%), Gaps = 3/40 (7%)
Query: 31 PPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPP 70
P P P T P T P P T P
Sbjct: 175 APIATATPTTKPTAFASTMPTV---TLTPTPTATTTTTIP 211
>3pzj_A Probable acetyltransferases; MCSG, PSI-2, structural genomics,
protein structure initiati midwest center for
structural genomics; HET: MSE; 1.85A {Chromobacterium
violaceum}
Length = 209
Score = 30.9 bits (70), Expect = 0.65
Identities = 9/39 (23%), Positives = 11/39 (28%), Gaps = 4/39 (10%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMG 65
A P PP P P + G P + G
Sbjct: 2 NAMHSPQISPPIAPSTPLLAGWRSAG----KAPEAAIRG 36
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm,
developmental protein, nucleus, phosphoprotein,
transcription; 2.80A {Drosophila melanogaster}
Length = 245
Score = 30.9 bits (69), Expect = 0.70
Identities = 5/56 (8%), Positives = 6/56 (10%)
Query: 31 PPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYW 86
P PPP Y+
Sbjct: 2 PHMDSLAGTPPPAYSPSEDGNSNNPNDGGQLLDAQMGDVAQVSYSEPAFWASIAYY 57
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone,
triacylglycerol hydrolase, all alpha helix protein, A/B
hydrolase fold; 1.85A {Burkholderia glumae} SCOP:
a.137.15.1
Length = 332
Score = 31.3 bits (70), Expect = 0.70
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 5/70 (7%)
Query: 26 VQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLY 85
+ AAP P P P + P P + P + G+ L
Sbjct: 21 MPAAPSPAPAGAVAGGPAAGVPAAASGAAEAAMPLPAAL-----PGALAGSHAPRLPLAA 75
Query: 86 WTRLIVSPEI 95
RL + +
Sbjct: 76 GGRLARTRAV 85
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 31.4 bits (72), Expect = 0.71
Identities = 7/28 (25%), Positives = 8/28 (28%)
Query: 26 VQAAPPPPPPPPPLPPPPPMMGTTPPPM 53
+ A P P MG P M
Sbjct: 516 IAAEKLRGAPDMGDMGGMPGMGGMPGMM 543
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 31.2 bits (71), Expect = 0.76
Identities = 6/94 (6%), Positives = 12/94 (12%), Gaps = 28/94 (29%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMM----------------GTPPPPPPMMGT 66
P V+ + + + G
Sbjct: 141 RPAVRLSAAFASNEHYSFSQDMVTLAGTIDPLDLPVFRDTLRDLLAEHGLSRSVVDCWNH 200
Query: 67 PP------------PPPPMMGTTPHVLGPLYWTR 88
+GP + R
Sbjct: 201 VEQLNLVFVPKAFQIAGDTFDDRFVFVGPCFDDR 234
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 30.9 bits (70), Expect = 0.79
Identities = 15/52 (28%), Positives = 17/52 (32%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
+PP P P P PP PP PP PPPP +
Sbjct: 7 GQSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFHVKSGLQIKKNA 58
Score = 30.1 bits (68), Expect = 1.7
Identities = 16/44 (36%), Positives = 17/44 (38%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPP 70
+ PP P P P PPP T P PPPPP P
Sbjct: 4 NSQGQSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFH 47
Score = 30.1 bits (68), Expect = 1.8
Identities = 19/39 (48%), Positives = 19/39 (48%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPP 61
L N Q PP P P P PPP P P P PPPPP
Sbjct: 2 LSNSQGQSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPP 40
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,,
oxidoreductase; HET: NAG MAN A2G HEM; 1.70A
{Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB:
1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A*
Length = 343
Score = 31.0 bits (70), Expect = 0.80
Identities = 12/53 (22%), Positives = 14/53 (26%), Gaps = 13/53 (24%)
Query: 30 PPPPPPPPPLPPPP-----------PMMGTTPPPMMGTPPPPPPMMGTPPPPP 71
P P P P TP P + T P P + PP
Sbjct: 290 PLSKPIPGNGPFSFFPPGKSHSDIEQACAETPFPSLVTLPGPATSV--ARIPP 340
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 31.0 bits (70), Expect = 0.81
Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 34 PPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
P P P P P P P + P P +P P P TPH
Sbjct: 304 PDPEPSPEPEPKPSLEPNTSLEREPRPNS---SPSPSPGQASETPH 346
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 31.1 bits (70), Expect = 0.81
Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 12/167 (7%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH---VLGP 83
+AAP P PP+ G P P P M P P G H LG
Sbjct: 28 EAAPTLRPVAPPISGT----GYQPRP----PKQDKQAMKKGPIIYPDAGGCKHPLDELGV 79
Query: 84 LYWTRLIVSPEIPSDTTPLWKELEEVPINNLEEFTELFSRQVTAQRPVTRKRQQKSSKVQ 143
L T + + + L ++ + + +F++ + + K + + +
Sbjct: 80 LCPTGCELQTTLLKQEKTVKPVLRDL-KDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRK 138
Query: 144 NVARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQ 190
+ ++ ++ + I S++ + A + SL Q
Sbjct: 139 DNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQ 185
>3zue_A VP1, capsid structural protein VP60; CAGE design, molecular switch,
protein engineering, structural polymorphism; 10.30A
{Rabbit hemorrhagic disease virus}
Length = 579
Score = 31.1 bits (69), Expect = 0.82
Identities = 10/77 (12%), Positives = 14/77 (18%), Gaps = 6/77 (7%)
Query: 33 PPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWTRLIVS 92
P T P T P ++ T + I
Sbjct: 4 KARTAPQGEAAGTATTASVPGTTTDGLDPGVVATTSVVTAENSSASIATAG------IGG 57
Query: 93 PEIPSDTTPLWKELEEV 109
P D W+
Sbjct: 58 PPQQVDQQETWRTNFYY 74
>2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas
mendocina}
Length = 258
Score = 30.8 bits (69), Expect = 0.83
Identities = 11/53 (20%), Positives = 15/53 (28%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVL 81
AP P P P P + P + P + P P +L
Sbjct: 1 APLPDTPGAPFPAVANFDRSGPYTVSSQSEGPSCRIYRPRDLGQGGVRHPVIL 53
>3uaq_A LBPB B-LOBE; beta barrel, lipoprotein, protein binding; 2.93A
{Moraxella bovis}
Length = 341
Score = 31.0 bits (69), Expect = 0.86
Identities = 4/55 (7%), Positives = 9/55 (16%), Gaps = 4/55 (7%)
Query: 21 FSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMG 75
F+ P+ + P++G
Sbjct: 6 FNNPSTIVIGQSKMIEKSDQSKDA----SAAKDDDNANADTKNKADSRLTMPVLG 56
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1,
2-alpha-mannosidase; substrate analogue, glycosyl
hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP:
a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Length = 538
Score = 31.1 bits (70), Expect = 0.90
Identities = 11/91 (12%), Positives = 16/91 (17%), Gaps = 2/91 (2%)
Query: 21 FSLPNVQAAPP--PPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
F+L + PP P G P P P
Sbjct: 2 FALLTCRLDPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELP 61
Query: 79 HVLGPLYWTRLIVSPEIPSDTTPLWKELEEV 109
+ + L + V
Sbjct: 62 SRRAEVPTKPPLPPARTQGTPVHLNYRQKGV 92
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase,
isoform A, structural genomics, structural genomics
consortium, SGC transferase; 1.85A {Homo sapiens} PDB:
2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A*
3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Length = 312
Score = 30.7 bits (70), Expect = 0.97
Identities = 12/111 (10%), Positives = 36/111 (32%), Gaps = 15/111 (13%)
Query: 163 SLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNS-------DLQ 215
+ ++ E + +E + + + I AH ++
Sbjct: 131 LPDVSATDFEKVDLT-QFKWIHIEG----RNASEQVKMLQRIDAHNTRQPPEQKIRVSVE 185
Query: 216 LDKPEQFLADL---ADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVC 263
++KP + L L D+ S+ +A + +++ + ++ +
Sbjct: 186 VEKPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLV 236
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A
{Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Length = 489
Score = 30.6 bits (70), Expect = 0.99
Identities = 7/46 (15%), Positives = 10/46 (21%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
+ P P L P P + P P +
Sbjct: 169 ISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQINFDHRSVLAFQG 214
Score = 28.7 bits (65), Expect = 4.3
Identities = 9/55 (16%), Positives = 12/55 (21%)
Query: 17 YSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPP 71
+ + P P LP P + T PP P
Sbjct: 160 FRKDIEKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQINFDHRSVLAFQG 214
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase,
oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A
2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A
3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A
3uac_A 3uab_A 3uae_A 3nsy_A ...
Length = 488
Score = 30.7 bits (69), Expect = 1.0
Identities = 11/50 (22%), Positives = 15/50 (30%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTT 77
A+ P LP P + G T + + P MMG
Sbjct: 298 ASGALPDTLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQA 347
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 30.1 bits (67), Expect = 1.0
Identities = 12/114 (10%), Positives = 25/114 (21%), Gaps = 11/114 (9%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYW 86
+ P P P P + +P P ++
Sbjct: 99 KCRVIPSQEHLNGPLPVPFTNGEIQKENSREALAEAALESPRPALVRSASSDT------- 151
Query: 87 TRLIVSPEIPSDTTPLWKELEEVPINNLEEFTELFSRQVTAQRPVTRKRQQKSS 140
D+ P ++ + + A+ +KR K +
Sbjct: 152 ----SEELNSQDSPPKQDSTAPSSTSSSDPILDFNISLAMAKERAHQKRSSKRA 201
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding
site, glycosylation, ultrahigh resolution, calcium; HET:
NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB:
1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A*
1mn2_A*
Length = 357
Score = 30.7 bits (69), Expect = 1.0
Identities = 15/75 (20%), Positives = 18/75 (24%), Gaps = 10/75 (13%)
Query: 19 NIFSLPNVQAAPPPPPPPPPLPPPPPMMGT----------TPPPMMGTPPPPPPMMGTPP 68
N SL + P P P P P P + T P +
Sbjct: 282 NRNSLIDCSDVVPVPKPATGQPAMFPASTGPQDLELSCPSERFPTLTTQPGASQSLIAHC 341
Query: 69 PPPPMMGTTPHVLGP 83
P M GP
Sbjct: 342 PDGSMSCPGVQFNGP 356
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 30.9 bits (68), Expect = 1.1
Identities = 17/141 (12%), Positives = 31/141 (21%), Gaps = 4/141 (2%)
Query: 3 YMDKRAKRRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPP 62
+ +R + + + A P P PP
Sbjct: 10 FARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRR 69
Query: 63 MMGTPPPPPPMMGTTPHVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPINNLEEFTELFS 122
+ + P +I T + + + +EL S
Sbjct: 70 LRLSVDEVSSPSTPEA----PDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELAS 125
Query: 123 RQVTAQRPVTRKRQQKSSKVQ 143
A+ R R K+S
Sbjct: 126 CLQRARELGARVRALKASAQD 146
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2
Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB:
3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A*
2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A*
4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Length = 499
Score = 30.3 bits (69), Expect = 1.3
Identities = 10/42 (23%), Positives = 13/42 (30%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPP 68
AP P P+ P++ TP P P G
Sbjct: 282 DGAPAVEPTTNQTTSVKPLNEVDLHPLVSTPVPGAPSSGGVD 323
>3cxn_A Urease accessory protein UREF; helical, nickel, chaperone; HET:
MSE; 1.55A {Helicobacter pylori} PDB: 3o1q_A 2wgl_A
3sf5_A
Length = 274
Score = 30.3 bits (67), Expect = 1.3
Identities = 5/42 (11%), Positives = 9/42 (21%), Gaps = 2/42 (4%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPP 71
P + + + +G PP P
Sbjct: 12 SGLVPRGSHMDKGKSVK--STEKSVGMPPKTPKTDNNAHVDN 51
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein,
flavoprotein, FAD, mitochondrion, plastid, chromophore,
chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana}
PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Length = 525
Score = 30.3 bits (69), Expect = 1.4
Identities = 6/44 (13%), Positives = 9/44 (20%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P L P P + P + P +
Sbjct: 207 IRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVG 250
>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular,
packing structure; 5.16A {Rattus norvegicus} SCOP:
i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B
Length = 1026
Score = 30.5 bits (69), Expect = 1.4
Identities = 10/45 (22%), Positives = 11/45 (24%), Gaps = 4/45 (8%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPP--PPMMGTPPPPPP 72
P P P P +G G P P G P
Sbjct: 416 PKGPTGEPGKPGEKGNVGLAGAR--GAPGPDGNNGAQGPPGLQGV 458
Score = 28.1 bits (63), Expect = 8.4
Identities = 8/49 (16%), Positives = 9/49 (18%), Gaps = 6/49 (12%)
Query: 30 PPPPPPPPPLPPPPPMMGTT----PPPMMGTPPPP--PPMMGTPPPPPP 72
P P P G +G P G P
Sbjct: 404 PRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGP 452
>2zoo_A Probable nitrite reductase; electron transfer, electron transport,
heme, iron, binding, oxidoreductase, transport; HET: SUC
HEM; 1.95A {Pseudoalteromonas haloplanktis}
Length = 442
Score = 30.2 bits (68), Expect = 1.5
Identities = 1/44 (2%), Positives = 6/44 (13%)
Query: 31 PPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMM 74
P + + + + +
Sbjct: 297 GPDDHSIFTGKTAENVYLPEGSAIQSLDNTFTKITANNKDEQIR 340
Score = 29.5 bits (66), Expect = 2.8
Identities = 2/53 (3%), Positives = 8/53 (15%), Gaps = 2/53 (3%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMG 75
+ V+ + + + + G
Sbjct: 292 MLKVEGPDDHSIFTGKTAENVYLPEGSAIQSL--DNTFTKITANNKDEQIRFG 342
>2y5t_F C1; immune system, antibody, rheumatoid arthritis; 2.20A {Mus
musculus}
Length = 38
Score = 26.9 bits (59), Expect = 1.5
Identities = 16/33 (48%), Positives = 16/33 (48%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPP 61
PP PP PP P PP G T P PP PP
Sbjct: 1 GPPGPPGPPGPPGPPGARGLTGRPGDAGPPGPP 33
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 30.1 bits (68), Expect = 1.5
Identities = 14/73 (19%), Positives = 18/73 (24%), Gaps = 5/73 (6%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPM---MGTT-P 78
LP + P PP P P G P + MG
Sbjct: 172 LPTPELILDPCPPSLQASDAPQGAPVQYVPYNG-SGAFPAWGAARTSARRVCICMGRMVL 230
Query: 79 HVLGPLYWTRLIV 91
+ GP R +
Sbjct: 231 NATGPAPLLRAVA 243
Score = 28.6 bits (64), Expect = 4.7
Identities = 13/88 (14%), Positives = 19/88 (21%), Gaps = 4/88 (4%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLG 82
LP V P P + G P P + P PP + +
Sbjct: 136 LPVVLHRWGVDPTAGPFSDRAHELLDPVCRHHGLTGLPTPELILDPCPPSLQASDAPQGA 195
Query: 83 PLYWTRLIVSPEIPSDTTPLWKELEEVP 110
P+ + V
Sbjct: 196 PVQY----VPYNGSGAFPAWGAARTSAR 219
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 30.0 bits (68), Expect = 1.6
Identities = 9/49 (18%), Positives = 13/49 (26%)
Query: 54 MGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWTRLIVSPEIPSDTTPL 102
MGT G+ P+ T W ++ PL
Sbjct: 9 MGTLEANTNGPGSMLSRMPVSSRTVPFGDHETWVQVTTPENAQPHALPL 57
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 30.2 bits (68), Expect = 1.6
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 13/85 (15%)
Query: 21 FSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPP---------PPPM---MGTPP 68
++ AA P P P G P PP+ G+ P
Sbjct: 173 YTDQPWLAADPVLSPLRPTDLGTVQTGAWILPDQRPLSAELEGFLRAGSPPVYVGFGSGP 232
Query: 69 PPPPMMGTTPHVLGPLYWTRLIVSP 93
P + R+++S
Sbjct: 233 APAEAARVAIEAVRAQGR-RVVLSS 256
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase,
caspase/hemoglobin fold; 1.40A {Trypanosoma brucei}
PDB: 4afp_A 4afv_A 4afr_A
Length = 367
Score = 30.0 bits (66), Expect = 1.6
Identities = 11/55 (20%), Positives = 15/55 (27%)
Query: 17 YSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPP 71
Y + L V + P PPP + P + TP P
Sbjct: 37 YVGLGWLNAVSSQPYLVQALGLQPPPRRVDVDAAFRDAKGLHGHQPWVATPLPGQ 91
Score = 30.0 bits (66), Expect = 1.7
Identities = 8/55 (14%), Positives = 11/55 (20%)
Query: 18 SNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
++ L + A P L PP P P
Sbjct: 35 ADYVGLGWLNAVSSQPYLVQALGLQPPPRRVDVDAAFRDAKGLHGHQPWVATPLP 89
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase,
CYP170A1, molecular mechanism, heme, iron,
metal-binding, monooxygenase; HET: HEM; 2.60A
{Streptomyces coelicolor A3} PDB: 3el3_A*
Length = 467
Score = 30.0 bits (68), Expect = 1.7
Identities = 6/28 (21%), Positives = 7/28 (25%)
Query: 45 MMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
M + P P P PP
Sbjct: 1 MTVESVNPETRAPAAPGAPELREPPVAG 28
Score = 28.8 bits (65), Expect = 3.7
Identities = 11/66 (16%), Positives = 16/66 (24%), Gaps = 10/66 (15%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPP----PPPMMGTTPHVLGP 83
P P P P + P P++G P M G
Sbjct: 3 VESVNPETRAPAAPGAPELREPPV-----AGGGVPLLGHGWRLARDPLAFMSQLRD-HGD 56
Query: 84 LYWTRL 89
+ +L
Sbjct: 57 VVRIKL 62
Score = 28.4 bits (64), Expect = 4.9
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 24 PNVQAAPPPPPPPPPLPPPPP 44
P +A P P PP
Sbjct: 8 PETRAPAAPGAPELREPPVAG 28
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 28.2 bits (63), Expect = 1.8
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMMGTTPP 51
+P+ + P LPP + T+ P
Sbjct: 62 MPSSENEKAVSPKKALLPPTVSLSATSGP 90
>3ml3_A Outer membrane protein ICSA autotransporter; beta helix, beta
sandwich, protein transport; 2.00A {Shigella flexneri}
Length = 189
Score = 29.3 bits (65), Expect = 1.8
Identities = 1/18 (5%), Positives = 1/18 (5%)
Query: 27 QAAPPPPPPPPPLPPPPP 44
Q
Sbjct: 169 QMDNQESKQMSNQESTQM 186
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand,
structural genomics, seattle S genomics center for
infectious disease, ssgcid; 1.90A {Entamoeba
histolytica} PDB: 3sia_A 3sib_A
Length = 220
Score = 29.4 bits (66), Expect = 1.8
Identities = 8/43 (18%), Positives = 11/43 (25%)
Query: 32 PPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMM 74
PP L P+ G+ PP P +
Sbjct: 3 PPVANFCLWNLQPIQGSWMGAACIYQMPPSVRNTWWFPLLNTI 45
Score = 29.4 bits (66), Expect = 1.9
Identities = 7/46 (15%), Positives = 9/46 (19%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPP 69
P V P PP + P + P
Sbjct: 3 PPVANFCLWNLQPIQGSWMGAACIYQMPPSVRNTWWFPLLNTIPLD 48
Score = 27.8 bits (62), Expect = 6.0
Identities = 6/43 (13%), Positives = 8/43 (18%)
Query: 31 PPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPM 73
PP P + PP P +
Sbjct: 3 PPVANFCLWNLQPIQGSWMGAACIYQMPPSVRNTWWFPLLNTI 45
>3bbj_A Putative thioesterase II; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; 2.16A {Thermobifida fusca}
Length = 272
Score = 29.6 bits (66), Expect = 1.9
Identities = 8/58 (13%), Positives = 12/58 (20%)
Query: 21 FSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
+ + A P P P +PP P + P
Sbjct: 108 TATLDPHAEPRYAAPQPAIPPQHQCRRVDPRQSHLPDDGFLARVDVDFSPDSYAALAR 165
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative,
dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x
morifolium} PDB: 2e1u_A 2e1t_A
Length = 454
Score = 29.9 bits (67), Expect = 2.0
Identities = 5/56 (8%), Positives = 12/56 (21%)
Query: 8 AKRRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPM 63
A+ E++ + P P + + + P
Sbjct: 189 ARSGNNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDYVTQSLAGPSDK 244
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel,
oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa}
SCOP: b.70.1.1
Length = 582
Score = 29.9 bits (67), Expect = 2.1
Identities = 11/65 (16%), Positives = 16/65 (24%), Gaps = 5/65 (7%)
Query: 35 PPPPLPPPPPMMGTTPPPMM-GTPPPPPPMMGTPPPPPPMMGTT----PHVLGPLYWTRL 89
P + + + G P P P G P LG W +
Sbjct: 358 LQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPM 417
Query: 90 IVSPE 94
S +
Sbjct: 418 AYSQD 422
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 29.8 bits (67), Expect = 2.1
Identities = 13/50 (26%), Positives = 13/50 (26%), Gaps = 4/50 (8%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPP----PMMGTPPPPPPMMGTPPPPPPM 73
A P P P P T P PP P G PP
Sbjct: 377 ARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIYPPHSPDFTGPADELPPY 426
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 29.6 bits (67), Expect = 2.1
Identities = 6/34 (17%), Positives = 9/34 (26%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPP 60
A P P P + + + PP
Sbjct: 250 STAVHMIQLPTASPASTPGAQASSGSVQPSVRPP 283
Score = 28.5 bits (64), Expect = 4.2
Identities = 7/56 (12%), Positives = 12/56 (21%), Gaps = 13/56 (23%)
Query: 25 NVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHV 80
+ + P P +TP + P PP +
Sbjct: 247 KIGSTAVHMIQLPTASPA-----STPGAQASSGSVQPS----VRPP----WFFQQI 289
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 29.7 bits (67), Expect = 2.1
Identities = 9/50 (18%), Positives = 10/50 (20%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
P P M P P P G P P +
Sbjct: 10 HQHQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTPPGAQPTAPGSLKAPD 59
>3hug_B Probable conserved membrane protein; ECF sigma factor, zinc
binding anti-sigma factor, oxidative transcription
regulation; 2.35A {Mycobacterium tuberculosis}
Length = 108
Score = 28.2 bits (62), Expect = 2.2
Identities = 4/36 (11%), Positives = 10/36 (27%)
Query: 39 LPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMM 74
L P ++ + P + P ++
Sbjct: 64 LCGVPALLSQLDRDEVAAISESAPTVVASGLSPELL 99
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 29.8 bits (67), Expect = 2.2
Identities = 12/62 (19%), Positives = 16/62 (25%), Gaps = 6/62 (9%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPM---MGTTPHV 80
P++ PP P P MM P P M T + G+
Sbjct: 167 PDLFIDICPPSLRPANAAPARMMRHVATS---RQCPLEPWMYTRDTRQRVLVTSGSRVAK 223
Query: 81 LG 82
Sbjct: 224 ES 225
Score = 28.6 bits (64), Expect = 4.0
Identities = 8/36 (22%), Positives = 10/36 (27%)
Query: 37 PPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
LP P + PP + P MM
Sbjct: 162 ERLPAPDLFIDICPPSLRPANAAPARMMRHVATSRQ 197
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 29.9 bits (66), Expect = 2.3
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 5/38 (13%)
Query: 33 PPPPPPLPPPPPMMGTT-----PPPMMGTPPPPPPMMG 65
P PP + P P P P P++G
Sbjct: 630 PELPPSSAHRSHLKHRHPHHYKPSPERYGKPIPNPLLG 667
Score = 29.5 bits (65), Expect = 2.5
Identities = 9/34 (26%), Positives = 9/34 (26%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPP 61
PP L P P G P P P
Sbjct: 631 ELPPSSAHRSHLKHRHPHHYKPSPERYGKPIPNP 664
Score = 28.8 bits (63), Expect = 4.0
Identities = 7/40 (17%), Positives = 9/40 (22%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTP 67
+ L T P P P +G P
Sbjct: 372 TSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAP 411
>1c8u_A Acyl-COA thioesterase II; internal repeats, hydrolase; HET: LDA;
1.90A {Escherichia coli} SCOP: d.38.1.3 d.38.1.3
Length = 285
Score = 29.2 bits (65), Expect = 2.3
Identities = 12/66 (18%), Positives = 16/66 (24%), Gaps = 4/66 (6%)
Query: 27 QAAPPPPPPPPPLPPP----PPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLG 82
Q P P P LP + PP + P+ P +
Sbjct: 117 QKTMPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPH 176
Query: 83 PLYWTR 88
W R
Sbjct: 177 RQVWIR 182
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET:
TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A*
2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Length = 543
Score = 29.6 bits (67), Expect = 2.4
Identities = 9/63 (14%), Positives = 12/63 (19%), Gaps = 6/63 (9%)
Query: 25 NVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPL 84
V+ P P P P + P LGP
Sbjct: 188 IVEQLKVPKVLGVPEKLKN------MPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPN 241
Query: 85 YWT 87
+
Sbjct: 242 KFP 244
Score = 28.8 bits (65), Expect = 4.3
Identities = 9/56 (16%), Positives = 11/56 (19%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLG 82
Q P P P + P M P +G G
Sbjct: 191 QLKVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGG 246
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 29.7 bits (66), Expect = 2.4
Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 10/91 (10%)
Query: 21 FSLPNVQAAPPPPPPPP----PLPPPPPMMGTTPPPMMGTPPP--PPPMMGTPPPPP--- 71
V ++ P P P G P + +P P+ G PP
Sbjct: 15 MFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVIS 74
Query: 72 -PMMGTTPHVLGPLYWTRLIVSPEIPSDTTP 101
PM + V SP++ S P
Sbjct: 75 SPMGPHSMSVPTTPTLGFSTGSPQLSSPMNP 105
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase,
multicopper oxidase, hexamer; 2.30A {Streptomyces
antibioticus} PDB: 3gyr_A
Length = 612
Score = 29.5 bits (65), Expect = 2.5
Identities = 7/61 (11%), Positives = 12/61 (19%)
Query: 18 SNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTT 77
+ + AP P P P +M P + +
Sbjct: 348 RRLRLVDKGPGAPAGTPDPLGGVRYPEVMEFRVRETCEEDSFALPEVLSGSFRRMSHDIP 407
Query: 78 P 78
Sbjct: 408 H 408
Score = 28.0 bits (61), Expect = 8.5
Identities = 9/51 (17%), Positives = 16/51 (31%)
Query: 34 PPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPL 84
P P P P+ G P +M + P + G+ + +
Sbjct: 356 GPGAPAGTPDPLGGVRYPEVMEFRVRETCEEDSFALPEVLSGSFRRMSHDI 406
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved
unknown protein, structural genomics, PSI; NMR
{Rhodopseudomonas palustris} SCOP: a.282.1.1
Length = 130
Score = 28.5 bits (63), Expect = 2.5
Identities = 5/36 (13%), Positives = 6/36 (16%)
Query: 18 SNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPM 53
S IF + P P
Sbjct: 9 SAIFGDSAAASPGGAQAPATTGAAGTAPTAPQPTAA 44
>2y5t_E C1; immune system, antibody, rheumatoid arthritis; 2.20A {Mus
musculus}
Length = 34
Score = 26.1 bits (57), Expect = 2.6
Identities = 16/33 (48%), Positives = 16/33 (48%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPP 61
PP PP PP P PP G T P PP PP
Sbjct: 1 GPPGPPGPPGPPGPPGARGLTGRPGDAGPPGPP 33
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 29.5 bits (67), Expect = 2.6
Identities = 10/72 (13%), Positives = 17/72 (23%), Gaps = 1/72 (1%)
Query: 7 RAKRRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTP-PPPPPMMG 65
+ KET + F ++ + P P P +
Sbjct: 12 VPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMGSAPSFNVDPLEQPAEPSKLAKKLRA 71
Query: 66 TPPPPPPMMGTT 77
P +G T
Sbjct: 72 EPDMDTSFVGLT 83
Score = 28.8 bits (65), Expect = 5.2
Identities = 7/62 (11%), Positives = 10/62 (16%)
Query: 6 KRAKRRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMG 65
+ K E P P P + P M
Sbjct: 18 MKETAAAKFERQHMDSPDLGTDDDDKAMGSAPSFNVDPLEQPAEPSKLAKKLRAEPDMDT 77
Query: 66 TP 67
+
Sbjct: 78 SF 79
>1x50_A Galectin-4; GAL-BIND lectin, sugar binding, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 164
Score = 28.4 bits (63), Expect = 2.8
Identities = 9/55 (16%), Positives = 11/55 (20%), Gaps = 7/55 (12%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPP-PMMGT-PPPPPP-----MMGTPPPPPPMM 74
+ LP PP P G + G PP
Sbjct: 2 SSGSSGHQQLNSLPTMEGPPTFNPPVPYFGRLQGGLTARRTIIIKGYVPPTGKSF 56
Score = 27.7 bits (61), Expect = 6.1
Identities = 11/50 (22%), Positives = 13/50 (26%), Gaps = 9/50 (18%)
Query: 24 PNVQAAPPPPPPPPPLPPPP-PMMGTTPPPMM--------GTPPPPPPMM 64
+ Q P PP PP P G + G PP
Sbjct: 7 GHQQLNSLPTMEGPPTFNPPVPYFGRLQGGLTARRTIIIKGYVPPTGKSF 56
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 29.0 bits (65), Expect = 2.9
Identities = 6/69 (8%), Positives = 12/69 (17%), Gaps = 11/69 (15%)
Query: 13 KKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
+ + + PP P P + PP
Sbjct: 206 NTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSG-----------GQPREPQVYTLPPSRDE 254
Query: 73 MMGTTPHVL 81
+ +
Sbjct: 255 LTKNQVSLT 263
>3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.1
Length = 104
Score = 27.8 bits (61), Expect = 2.9
Identities = 8/43 (18%), Positives = 10/43 (23%)
Query: 33 PPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMG 75
P P P P G ++ P P G
Sbjct: 48 ITPSPLFAEPIASQELVRLPGQGVSAGLASLLHKRPMPTAYFG 90
>1tzp_A Penicillin-insensitive murein endopeptidase; LAS enzyme,
metallopeptidase, peptidoglycan hydrolase; 1.40A
{Escherichia coli} SCOP: d.65.1.3 PDB: 1u10_A
Length = 255
Score = 28.9 bits (64), Expect = 3.0
Identities = 6/18 (33%), Positives = 6/18 (33%)
Query: 27 QAAPPPPPPPPPLPPPPP 44
P P PPP P
Sbjct: 226 PPKPGTTKPEKKTPPPLP 243
Score = 28.1 bits (62), Expect = 5.8
Identities = 9/38 (23%), Positives = 9/38 (23%), Gaps = 13/38 (34%)
Query: 27 QAAPPP-------------PPPPPPLPPPPPMMGTTPP 51
Q PP PP P P PP
Sbjct: 207 QPLPPSGDGCGAELQSWFEPPKPGTTKPEKKTPPPLPP 244
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth
factor, hormone/growth factor complex; HET: 1PE; 2.20A
{Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A
2o26_A
Length = 273
Score = 28.8 bits (63), Expect = 3.2
Identities = 13/103 (12%), Positives = 21/103 (20%), Gaps = 15/103 (14%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMG------------- 75
P PP + PP
Sbjct: 165 VSSTLSPEKDSRVSVTKPFMLPPVAASSLRNDSSSSNRKAKNPPGDSSLHWAAMALPALF 224
Query: 76 --TTPHVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPINNLEE 116
G LYW + S + + +E E+ + +E
Sbjct: 225 SLIIGFAFGALYWKKRQPSLTRAVENIQINEEDNEISMLQEKE 267
>1bt3_A Protein (catechol oxidase); dicopper enzyme, oxidoreductase;
2.50A {Ipomoea batatas} SCOP: a.86.1.2 PDB: 1bt2_A
1bt1_A 1bug_A*
Length = 345
Score = 29.2 bits (64), Expect = 3.2
Identities = 12/47 (25%), Positives = 14/47 (29%), Gaps = 7/47 (14%)
Query: 29 APPPPP-------PPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPP 68
AP P PP LPP + PP P + T
Sbjct: 1 APIQAPEISKCVVPPADLPPGAVVDNCCPPVASNIVDYKLPAVTTMK 47
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; 2.20A {Erwinia
carotovora}
Length = 157
Score = 28.2 bits (62), Expect = 3.2
Identities = 8/43 (18%), Positives = 10/43 (23%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P P P P + G P + P P
Sbjct: 81 PDNPGIELPTDTAHGEQPVIPSAIPGLEIPEMDDVSILATPMP 123
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Length = 437
Score = 29.0 bits (64), Expect = 3.2
Identities = 16/58 (27%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Query: 24 PNVQA--APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
PN+ A AP P P P P P G P PPP T
Sbjct: 7 PNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETRE 64
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis,
glycoside hydrolase FA; 1.80A {Streptomyces coelicolor}
PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Length = 695
Score = 29.1 bits (65), Expect = 3.4
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMG 65
++ L P M T T P ++G
Sbjct: 3 SSHHHHHHSSGLVPRGSHMPATHHS-SATSAERPTVVG 39
>2q17_A Formylglycine generating enzyme; FGE, sulfatase, unknown
function; 2.10A {Streptomyces coelicolor}
Length = 346
Score = 28.8 bits (64), Expect = 3.5
Identities = 8/48 (16%), Positives = 9/48 (18%), Gaps = 11/48 (22%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMMGTTPPPM---------MGTPPPPP 61
P A P P P P + MG
Sbjct: 30 DPFTDVAAPSPAAAA--EPGPAARPRSTRGQVRLPGGEFAMGDAFGEG 75
Score = 28.8 bits (64), Expect = 3.9
Identities = 8/57 (14%), Positives = 9/57 (15%), Gaps = 10/57 (17%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPM---------MGTPPPPP 71
P + P P P P P MG
Sbjct: 20 STENLYFQGIDPFTDVAAPSPAAAAEPGP-AARPRSTRGQVRLPGGEFAMGDAFGEG 75
>1sr4_A CDT A, cytolethal distending toxin subunit A; bacterial,
virulence, DNA damage, genotoxin, cytotoxins, cell
cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi}
SCOP: b.42.2.1 PDB: 2f2f_A
Length = 206
Score = 28.7 bits (63), Expect = 3.5
Identities = 13/60 (21%), Positives = 14/60 (23%), Gaps = 8/60 (13%)
Query: 32 PPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGT-----TPHVLGPLYW 86
P P P L P M P P +MG T L W
Sbjct: 25 QPQPQPLLSKTPSMSLNLLSSSGPNRQVLPSE---PSNFMTLMGQNGALLTVWALAKRNW 81
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 28.9 bits (64), Expect = 3.5
Identities = 10/60 (16%), Positives = 12/60 (20%)
Query: 13 KKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
+ NI + P P P P P P P P
Sbjct: 203 RNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNS 262
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 29.1 bits (66), Expect = 3.6
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 26 VQAAPPPPPPPPPLPPPPP 44
V+ AP P
Sbjct: 428 VEEAPEREHRETTAHDGRP 446
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases,
protoporphyrin IX, electron T lignin peroxidase, lignin
degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB:
3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A*
2vka_A*
Length = 331
Score = 28.7 bits (64), Expect = 3.7
Identities = 13/52 (25%), Positives = 16/52 (30%), Gaps = 8/52 (15%)
Query: 26 VQAAPPPPPPPPPLPPPPPMM------GTTPPPMMGTPPPPPPMMGTPPPPP 71
V PP LP + TP P + P P + PP P
Sbjct: 281 VIPTPPALVGAAHLPAGFSLSDVEQACAATPFPALTADPGPVTSV--PPVPG 330
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 28.0 bits (62), Expect = 3.8
Identities = 7/46 (15%), Positives = 9/46 (19%)
Query: 33 PPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
P L P + G M P G +
Sbjct: 2 PLGSESLMPSQVVKGGAFDGTMNGPFGHGYGEGAGEGIDDVEWVVG 47
>2v8t_A Manganese-containing pseudocatalase; manganese catalase,
oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A
2cwl_A
Length = 302
Score = 28.6 bits (63), Expect = 4.2
Identities = 5/27 (18%), Positives = 5/27 (18%)
Query: 26 VQAAPPPPPPPPPLPPPPPMMGTTPPP 52
V PP P P
Sbjct: 261 VVDGPPTGGPVFDAGHDAAEFAPEFHP 287
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond,
EGF- like domain, glycoprotein, polymorphism,
structural genomics, PSI-2; NMR {Homo sapiens}
Length = 71
Score = 26.5 bits (58), Expect = 4.3
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 18 SNIFSLPNVQAAPPPPPPPPPLPPPPP 44
+ + + + + PPP PP P PP
Sbjct: 33 AAVINDLHGEGPPPPVPPAQHPNPCPP 59
Score = 26.2 bits (57), Expect = 5.7
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMMGTTP 50
+ ++ PPPP PP P P G P
Sbjct: 36 INDLHGEGPPPPVPPAQHPNPCPPGYEP 63
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase,
sporulation, COTA- LAC copper centre; 1.60A {Bacillus
subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A
1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A
2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A
4ako_A
Length = 513
Score = 28.9 bits (64), Expect = 4.3
Identities = 5/41 (12%), Positives = 7/41 (17%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPP 68
A P L P + + P
Sbjct: 344 AQKDESRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRP 384
>2b0r_A Possible adenyl cyclase-associated protein; structural genomics
consortium, SGC, unknown function; 2.60A
{Cryptosporidium parvum}
Length = 202
Score = 28.1 bits (62), Expect = 4.4
Identities = 3/31 (9%), Positives = 5/31 (16%)
Query: 22 SLPNVQAAPPPPPPPPPLPPPPPMMGTTPPP 52
L + + T P
Sbjct: 13 GLVPRGSKSQIYLKKEKKMKAARQVVTNGSP 43
Score = 27.3 bits (60), Expect = 9.2
Identities = 2/36 (5%), Positives = 9/36 (25%)
Query: 16 TYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPP 51
+ + +P + + ++ P
Sbjct: 8 HHHSSGLVPRGSKSQIYLKKEKKMKAARQVVTNGSP 43
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A
{Arabidopsis thaliana}
Length = 537
Score = 28.8 bits (65), Expect = 4.5
Identities = 5/47 (10%), Positives = 8/47 (17%), Gaps = 3/47 (6%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPP---PPPMMGTPPPPPP 72
A PP +G + + P
Sbjct: 174 AKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRG 220
>1m0u_A GST2 gene product; flight muscle protein, sigma, transferase;
HET: GSH; 1.75A {Drosophila melanogaster} SCOP:
a.45.1.1 c.47.1.5
Length = 249
Score = 28.6 bits (64), Expect = 4.5
Identities = 11/44 (25%), Positives = 12/44 (27%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
APP PP PP + G PP P
Sbjct: 7 APPAEGAPPAEGEAPPPAEGAEGAVEGGEAAPPAEPAEPIKHSY 50
Score = 27.4 bits (61), Expect = 9.1
Identities = 8/41 (19%), Positives = 9/41 (21%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMM 64
P + APP PP P P
Sbjct: 8 PPAEGAPPAEGEAPPPAEGAEGAVEGGEAAPPAEPAEPIKH 48
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 28.6 bits (64), Expect = 4.5
Identities = 9/80 (11%), Positives = 14/80 (17%), Gaps = 3/80 (3%)
Query: 1 MEYMDKRAKRRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPP 60
+ K E S P P P + T G
Sbjct: 163 YARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHADRVDEDVYTFVGACQGDRAEE 222
Query: 61 PPMMGTPPPPPPM---MGTT 77
+ +G+
Sbjct: 223 GGWQRPAGAEKVVLVSLGSA 242
>1eys_H Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Length = 259
Score = 28.3 bits (63), Expect = 4.6
Identities = 22/130 (16%), Positives = 34/130 (26%), Gaps = 17/130 (13%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPM------MGTP--PPPPPMMG 75
P P P P G T P G+P P PM+
Sbjct: 50 GGRYKVVGFPDLPDPKTFVLPHNGGTVVAPRVEAPVAVNATPFSPAPGSPLVPNGDPMLS 109
Query: 76 TTPHVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPINNLEEFTELFSRQVTAQRPVTRKR 135
GP ++ + P + VP+ +EF+ V
Sbjct: 110 G----FGPAASPDRPKHCDLTFEGLP-----KIVPMRVAKEFSIAEGDPDPRGMTVVGLD 160
Query: 136 QQKSSKVQNV 145
+ + V +V
Sbjct: 161 GEVAGTVSDV 170
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein;
HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP:
a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Length = 509
Score = 28.7 bits (65), Expect = 4.6
Identities = 5/46 (10%), Positives = 7/46 (15%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P PP + P + P
Sbjct: 170 YDPESPLLPPKKIISGDVSKCVADPLVFEDDSEKGSNALLARAWSP 215
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing,
spliceosome, RNA-binding domain, SM fold, finger, RNA
recognition motif, 5' splice site; 5.49A {Homo sapiens}
PDB: 1uw2_A 2vrd_A
Length = 77
Score = 26.5 bits (58), Expect = 4.9
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 46 MGTTPPPMMGTPPPPPPMM 64
G PP PPP M+
Sbjct: 59 QGKIPPTPFSAPPPAGAMI 77
Score = 26.1 bits (57), Expect = 6.9
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 27 QAAPPPPPPPPPLPPPPPMM 46
Q PP P PP M+
Sbjct: 58 QQGKIPPTPFSAPPPAGAMI 77
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY,
metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8
PDB: 2jc2_A
Length = 198
Score = 28.2 bits (63), Expect = 5.0
Identities = 8/35 (22%), Positives = 9/35 (25%)
Query: 46 MGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHV 80
M P G P G P P T +
Sbjct: 1 MAYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPL 35
>2xep_A ORF12; hydrolase; 1.50A {Streptomyces clavuligerus} PDB: 2xf3_A*
2xfs_A* 2xft_A 2xgn_A 2xh9_A*
Length = 458
Score = 28.7 bits (63), Expect = 5.0
Identities = 10/88 (11%), Positives = 16/88 (18%), Gaps = 11/88 (12%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPP---------MMGTPPPPPPMMGTPPPPP--PMMG 75
+A P P L + P ++ + P P P G
Sbjct: 4 KADSVPTPAEAALAAQTALAADDSPMGDAARWAMGLLTSSGLPRPEDVAARFIPTFAAAG 63
Query: 76 TTPHVLGPLYWTRLIVSPEIPSDTTPLW 103
+ W
Sbjct: 64 NFAETVREWRSKGPFTVRAYHPVAHKGW 91
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated
deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens}
PDB: 3rzu_A
Length = 211
Score = 28.1 bits (62), Expect = 5.1
Identities = 5/36 (13%), Positives = 10/36 (27%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMG 65
P PP++ + P + P +
Sbjct: 4 GSSDCHTTVRPAKPPVVDRSLKPGALSNSESIPTID 39
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A
{Pyrobaculum aerophilum}
Length = 448
Score = 28.3 bits (63), Expect = 5.3
Identities = 11/77 (14%), Positives = 18/77 (23%), Gaps = 1/77 (1%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVL-GPLYW 86
A P P + PPP PP + + G +
Sbjct: 275 ALPEGSEYTIATFLVEGKGEAVPVEALSDPPPEPPKPTRTRRFALSLSGMQWTINGMFWN 334
Query: 87 TRLIVSPEIPSDTTPLW 103
+ + + LW
Sbjct: 335 ASNPLFEHVSVEGVELW 351
Score = 28.0 bits (62), Expect = 8.2
Identities = 8/59 (13%), Positives = 9/59 (15%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWT 87
P P PP P L + WT
Sbjct: 269 GHGMQEALPEGSEYTIATFLVEGKGEAVPVEALSDPPPEPPKPTRTRRFALSLSGMQWT 327
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 28.3 bits (64), Expect = 5.3
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPP 51
PP +P ++ P
Sbjct: 25 LRNLHLPPLVPGFLHLLQPNLP 46
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 5.4
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 10/27 (37%)
Query: 399 VKTGKFKSVLKFYQYIPKGIPESDVTP 425
+K K ++ LK Y +S P
Sbjct: 22 LK--KLQASLKLYA------DDS--AP 38
>3u24_A Putative lipoprotein; COG4805, DUF885, structural genomics,
PSI-biology, midwest C structural genomics, MCSG, lipid
BIND protein; 2.25A {Shewanella oneidensis}
Length = 572
Score = 28.4 bits (63), Expect = 5.7
Identities = 11/88 (12%), Positives = 19/88 (21%), Gaps = 10/88 (11%)
Query: 2 EYMDKRAKRRKKKETYSNIFSLP-----NVQAAPPPPPPPPPLPPPPPMMGTTP-----P 51
+ K+ + NI +L V+ P + P P
Sbjct: 321 SEVRKQIPELIEFVNQKNIVTLDPKKPLVVRETPEYMRGYASISAPGPYDKLGNTYYNVT 380
Query: 52 PMMGTPPPPPPMMGTPPPPPPMMGTTPH 79
P+ G + H
Sbjct: 381 PLDGMSNESAESYLREYNHWILQILNIH 408
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag,
phosphorylation, gene regulation, signaling protein;
HET: TPO FAD; 2.30A {Drosophila melanogaster}
Length = 538
Score = 28.4 bits (64), Expect = 5.8
Identities = 9/63 (14%), Positives = 11/63 (17%), Gaps = 5/63 (7%)
Query: 25 NVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPP-----PPPPMMGTPPPPPPMMGTTPH 79
VQ PP P P + P P +
Sbjct: 163 TVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINW 222
Query: 80 VLG 82
G
Sbjct: 223 RGG 225
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton
TR pathway, revertant, integral membrane protein,
photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A
{Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB:
1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H*
1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H*
1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Length = 260
Score = 27.9 bits (62), Expect = 5.9
Identities = 25/111 (22%), Positives = 32/111 (28%), Gaps = 22/111 (19%)
Query: 21 FSLPNVQAAPPPPPPPPPLPPP-----PPMMGTTPPPMMGTPPPPPPM------MGTP-- 67
+ L N P P PLP P P GT P + P + G P
Sbjct: 40 YPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHA 99
Query: 68 PPPPPMMGTTPHVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPINNLEEFT 118
P PM +GP W PE+ + P+ F
Sbjct: 100 PTGDPMKDG----VGPASWVARRDLPELDGHGHN-----KIKPMKAAAGFH 141
>3alr_A Nanos protein; zinc-finger, translational repression, RNA,
3'-UTR, metal BI protein; 2.10A {Danio rerio}
Length = 106
Score = 27.0 bits (59), Expect = 6.1
Identities = 6/33 (18%), Positives = 7/33 (21%)
Query: 32 PPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMM 64
P P P T+P P
Sbjct: 6 ESPSGPIRSRDSPEQNTSPGGGKPKSSPAERKF 38
>1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin
A, alpha/beta hydrolase family; 1.85A {Bacillus
subtilis} SCOP: c.69.1.2
Length = 361
Score = 28.2 bits (63), Expect = 6.1
Identities = 8/56 (14%), Positives = 13/56 (23%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
A PP P + + P + +T +LG
Sbjct: 35 AVAAAPPVSASDDLPTVLAAVGASHDGFQAVYDSIALDLPTDRDDVETSTETILGV 90
Score = 27.8 bits (62), Expect = 7.0
Identities = 9/79 (11%), Positives = 18/79 (22%), Gaps = 3/79 (3%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYW 86
A PP P ++ G + P + T+ + +
Sbjct: 33 LDAVAAAPPVSASDDLPTVLAAVGASHDGFQAVYDSIALDLPTDRDDVETSTETILGVDG 92
Query: 87 TRL---IVSPEIPSDTTPL 102
+ + P P
Sbjct: 93 NEITLHVFRPAGVEGVLPG 111
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat,
transcription; 2.20A {Homo sapiens}
Length = 268
Score = 28.1 bits (62), Expect = 6.1
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 235 RIACFMFEADFSDSIALIDSKLNNIKSVCEFLMK--SEHLKKVIAIILS-LGNFMNGGNR 291
+ + + D + I + I +C +M+ SE K V IL + G
Sbjct: 124 GVIGALVKTDEQEVINFL--LTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAY 181
Query: 292 LRGQADGFG--LEILPKLKDVRSKDNSVTLLHFIVRTYLRNSENP-----LNESLP 340
+ + F IL K+ SK+ S LL +VR YLR S+NP L + LP
Sbjct: 182 ICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLP 237
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and
neural wiskott-aldrich syndrome...; verprolin,
polyproline, protein- protein complex; NMR {Homo
sapiens}
Length = 169
Score = 27.8 bits (61), Expect = 6.2
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 5/38 (13%)
Query: 35 PPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P LPPP P + + P + P
Sbjct: 10 PISDLPPPEPYV-----QTTKSYPSKLARNESRGGLVP 42
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 28.2 bits (62), Expect = 6.5
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 7 RAKRRKKKETYSNIFSLPNVQAAPPPPPPPPP 38
+A R ET + + AA P P P P
Sbjct: 683 QAASRANGETKIDCVQVATKGAATPKPVPEPE 714
>1mnn_A NDT80 protein; IG fold, protein_DNA complex, transcription-DNA
complex; 1.40A {Saccharomyces cerevisiae} SCOP: b.2.5.7
PDB: 2evg_A 2euv_A 2euw_A 2etw_A 2eux_A 2evf_A 2euz_A
2evh_A 2evi_A 2evj_A 1mn4_A 1m6u_A 1m7u_A
Length = 340
Score = 27.9 bits (61), Expect = 6.5
Identities = 9/60 (15%), Positives = 12/60 (20%), Gaps = 1/60 (1%)
Query: 27 QAAPPPPPPPP-PLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLY 85
Q P P P PLP + + + L Y
Sbjct: 182 QFCPSVCPLVPSPLPKHQTIREASNVRNITKMKKYDSTFYLHRDHVNYEEYGVDSLLFSY 241
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein;
2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A
Length = 268
Score = 27.9 bits (61), Expect = 6.7
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 30 PPPPPPPPPLPPPPPMMGTTPPPMMGTPPPP 60
PP PP P P PP+ P P
Sbjct: 7 HPPMPPHPGHYWPVHNELAFQPPISNHPAPE 37
>2b6b_D CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahedral virus,
virus-recepto; 25.00A {Homo sapiens} SCOP: d.169.1.1
Length = 175
Score = 27.5 bits (61), Expect = 6.7
Identities = 8/25 (32%), Positives = 8/25 (32%), Gaps = 2/25 (8%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPP 52
AA L P P PPP
Sbjct: 152 AASCSRDEEQFLSPAPA--TPNPPP 174
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 28.0 bits (63), Expect = 6.7
Identities = 7/35 (20%), Positives = 9/35 (25%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPP 62
+ P PPP P + T P
Sbjct: 303 VSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSP 337
>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy,
dimerization, image processing, computer-assist
molecular sequence DATA; 10.50A {Hepatitis e virus}
Length = 660
Score = 28.4 bits (62), Expect = 6.8
Identities = 10/82 (12%), Positives = 19/82 (23%)
Query: 19 NIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
I N P P P P P + + T P + +
Sbjct: 439 VIQDYDNQHEQDRPTPSPAPSRPFSVLRANDVLWLSLTAAEYDQSTYGSSTGPVYVSDSV 498
Query: 79 HVLGPLYWTRLIVSPEIPSDTT 100
++ + + + T
Sbjct: 499 TLVNVATGAQAVARSLDWTKVT 520
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic
protein NCK2; T-cell receptor, SH3 domain, immunology,
SH2 domain; NMR {Homo sapiens}
Length = 86
Score = 26.3 bits (58), Expect = 7.0
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 32 PPPPPPPLPPPPPMMGTTPPPMMGTPPPP 60
PPP P P + + +
Sbjct: 4 ERPPPVPNPDYNSLKKGSLVKNLHMTEEV 32
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair,
DNA binding protein; 3.41A {Mus musculus}
Length = 1323
Score = 28.4 bits (62), Expect = 7.0
Identities = 31/233 (13%), Positives = 70/233 (30%), Gaps = 15/233 (6%)
Query: 114 LEEFTELFSRQVTAQRPVTRKR-QQKSSKVQNVARLIDSKRSQNVGILAQ---SLHIEFS 169
LE+ ++ +TA + K + + L V + Q +
Sbjct: 875 LEDLSQKLENMLTAPFAKRICCFKNKGRQNIGFSHLHQRSVQDIVHCVVQLLTPMCNHLE 934
Query: 170 EIESAIFNMDASVVSLEALQQIYDVRATDEE------INLIRAHLASNSDLQLDKPEQFL 223
I + + A +S + + + ++ A A + L
Sbjct: 935 NIHNFFQCLGAEHLSADDKARATAQEQHTMACCYQKLLQVLHALFAWK-GFTHQSKHRLL 993
Query: 224 ADLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLG 283
+ S R+ + + ++ S L N +L +++ +L
Sbjct: 994 HSA--LEVLSNRLKQMEQDQPLEELVSQSFSYLQNFHHSVPSFQCGLYLLRLLMALLEKS 1051
Query: 284 NFMNGGN-RLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRTYLRNSENPL 335
N +L A P + ++ + L H ++ YL +++N L
Sbjct: 1052 AVPNQKKEKLASLAKQLLCRAWPHGEKEKNPTFNDHL-HDVLYIYLEHTDNVL 1103
>1j2g_A Uricase, urate oxidase; T-fold barrel, purine, oxidoreductase; HET:
AZA; 2.20A {Bacillus SP} SCOP: d.96.1.4 d.96.1.4
Length = 319
Score = 28.0 bits (62), Expect = 7.2
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 193 DVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHF 232
V ATD N I+ HLAS + E FL +A F
Sbjct: 69 LVVATDSMKNFIQKHLASYT---GTTIEGFLEYVAT--SF 103
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural
genomics, structural genomics consortium, SGC; 1.80A
{Toxoplasma gondii}
Length = 413
Score = 28.1 bits (62), Expect = 7.3
Identities = 8/46 (17%), Positives = 10/46 (21%), Gaps = 2/46 (4%)
Query: 25 NVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPP 70
++ P P G PP GT P
Sbjct: 369 QLRTELSAALPLYQTDGEPTREGGAPPS--GTSQPDEAGAAEAVTA 412
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 28.0 bits (63), Expect = 7.3
Identities = 9/63 (14%), Positives = 16/63 (25%), Gaps = 14/63 (22%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYW 86
+ P PP + P P +G P + GP++
Sbjct: 4 KTLPAGVKSPPYIFSPIPFLGHAIAFGKS--------------PIEFLENAYEKYGPVFS 49
Query: 87 TRL 89
+
Sbjct: 50 FTM 52
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 27.9 bits (62), Expect = 7.4
Identities = 16/85 (18%), Positives = 24/85 (28%), Gaps = 13/85 (15%)
Query: 21 FSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPP---------PPPM---MGTPP 68
++ AA P P P G P P PPP+ G+
Sbjct: 190 YTDHPWVAADPVLAPLQPTDLDAVQTGAWILPDERPLSPELAAFLDAGPPPVYLGFGSLG 249
Query: 69 PPPPMMGTTPHVLGPLYWTRLIVSP 93
P + + R+I+S
Sbjct: 250 APADAVRVAIDAIRAHGR-RVILSR 273
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET:
NAG BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 28.2 bits (63), Expect = 7.4
Identities = 6/76 (7%), Positives = 12/76 (15%), Gaps = 5/76 (6%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYW 86
++ P P + P + W
Sbjct: 350 DSSSIANPTSVGTTPRGTCEDEPVASL--VPHLAL---DVGGYSLVDEQVSSAFTNYFTW 404
Query: 87 TRLIVSPEIPSDTTPL 102
T S + +
Sbjct: 405 TINSSSLLLDWSSPTT 420
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase; TIM barrel, methyltetrahydrofolate,
zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A
1xdj_A 1xr2_A* 1xpg_A*
Length = 766
Score = 28.2 bits (63), Expect = 7.5
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 164 LHI---EFSEIESAIFNMDASVVSLEA 187
H+ +F+EI I ++ V+S+EA
Sbjct: 649 AHMCYSDFNEIIEYIHQLEFDVISIEA 675
>1ei8_A Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP- Gly)5; triple
helix, contractIle protein; 2.00A {Synthetic} SCOP:
k.3.1.1
Length = 29
Score = 24.8 bits (54), Expect = 7.6
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 34 PPPPPLPPPPPMMGTTPPPMMGTPPPPP 61
PP PP PP PP G PP PP PP
Sbjct: 1 PPGPPGPPGPPGPGPPGPPGPPGPPGPP 28
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 28.0 bits (63), Expect = 7.7
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 46 MGTTPPPMMGTPPPPPPMMGTPPPPPP 72
M T + G+P P P T P PP
Sbjct: 1 MTETEIRLTGSPAPSFPQDRTCPYQPP 27
>3di5_A DINB-like protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2; HET:
MSE; 2.01A {Bacillus cereus atcc 10987}
Length = 168
Score = 27.3 bits (60), Expect = 7.8
Identities = 6/26 (23%), Positives = 7/26 (26%)
Query: 45 MMGTTPPPMMGTPPPPPPMMGTPPPP 70
G T P + G G P
Sbjct: 142 QAGLTVPGVYGPAKEEWATAGMEAPK 167
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 27.8 bits (62), Expect = 7.9
Identities = 8/58 (13%), Positives = 14/58 (24%), Gaps = 8/58 (13%)
Query: 24 PNVQAAPPP-PPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPM---MGTT 77
+ A P + +G P G G P + +G+
Sbjct: 212 RCIVALPRTFQIKGDTVGDNYTFVG----PTYGDRSHQGTWEGPGDGRPVLLIALGSA 265
>1oht_A CG14704 protein; peptidoglycan-recognition protein-LB isoform 2,
hydrolase; HET: TLA; 2.0A {Drosophila melanogaster}
SCOP: d.118.1.1
Length = 215
Score = 27.6 bits (61), Expect = 7.9
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 2/48 (4%)
Query: 17 YSNIFSLPNVQAAPPPPPPPPPLPPPPPMM--GTTPPPMMGTPPPPPP 62
++ I S P+ P P + P PP P
Sbjct: 166 FAEISSWPHFTHINDTEGVSSTTAPVVPHVHPQAAAPQKPHQSPPAAP 213
>2f6a_E Collagen; CNA, mscramm, adhesion, ECM, cell adhesion/structural
protein complex; 3.29A {Staphylococcus aureus}
Length = 30
Score = 24.5 bits (53), Expect = 8.0
Identities = 17/31 (54%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 31 PPPPPPPPLPPPPPMMGTTPPPMMGTPPPPP 61
PP PP PP PP P G T PP PP PP
Sbjct: 2 PPGPPGPPGPPGP--RGRTGPPGPPGPPGPP 30
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 28.0 bits (62), Expect = 8.1
Identities = 9/47 (19%), Positives = 13/47 (27%)
Query: 25 NVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPP 71
+ + P P P P P P + PP + P
Sbjct: 212 DKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSP 258
Score = 28.0 bits (62), Expect = 8.2
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 8/77 (10%)
Query: 25 NVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPP----PPPPMMGTTPHV 80
NV + P P + PP P P ++G P PP +
Sbjct: 201 NVAHPASSTKVDKKIEPRGPTIKPCPPC----KCPAPNLLGGPSVFIFPPKIKDVLMISL 256
Query: 81 LGPLYWTRLIVSPEIPS 97
+ + VS + P
Sbjct: 257 SPIVTCVVVDVSEDDPD 273
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 27.6 bits (61), Expect = 8.7
Identities = 4/36 (11%), Positives = 8/36 (22%)
Query: 25 NVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPP 60
+ + P P + + P P
Sbjct: 204 STKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPK 239
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL
adhesion-protein binding complex; HET: EPE; 2.54A {Homo
sapiens}
Length = 283
Score = 27.7 bits (60), Expect = 8.8
Identities = 19/76 (25%), Positives = 24/76 (31%), Gaps = 7/76 (9%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYW 86
+ APP PP P PPP PPP P PMM +
Sbjct: 6 ELAPPKPPLPEGEVPPP-----RPPPPEEKDEEFPEQKAGEVINQPMMMAARQLHDEA-- 58
Query: 87 TRLIVSPEIPSDTTPL 102
+ P IP+ +
Sbjct: 59 RKWSSKPGIPAAEVGI 74
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase,
metalloenzyme, preoxidase; HET: MES; 1.33A
{Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A
1jku_A
Length = 266
Score = 27.3 bits (60), Expect = 8.9
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 26 VQAAPPPPPPPPPLPPPPPMM 46
Q P P + P P +
Sbjct: 241 YQENPEAMGGIPHIKPGDPRL 261
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 28.0 bits (63), Expect = 9.0
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 27 QAAPPPPPPPPPLPPPPP 44
+A P P P P P
Sbjct: 452 EAPEADEPEPAPDSGPVP 469
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase; structural genomics, target 6426D,
PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A
3t0c_A
Length = 755
Score = 27.9 bits (62), Expect = 9.5
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 164 LHI---EFSEIESAIFNMDASVVSLEA 187
H+ +F EI AI +DA V+S+E
Sbjct: 631 THMCYSKFDEIIDAIRALDADVISIET 657
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 26.9 bits (59), Expect = 9.7
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMMGTTPPPM 53
+P +Q P P P T P
Sbjct: 121 VPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQ 151
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of
EIF4E, cytoplasm, HOST-virus interaction, lipoprotein,
membrane; NMR {Lassa virus josiah}
Length = 99
Score = 26.3 bits (57), Expect = 9.8
Identities = 6/20 (30%), Positives = 6/20 (30%)
Query: 23 LPNVQAAPPPPPPPPPLPPP 42
APP PPP
Sbjct: 77 PSAAPTAPPTGAADSIRPPP 96
>1yk3_A Hypothetical protein RV1347C/MT1389; acyltransferase,
GCN5-related fold, structural genomics, PSI, protein
structure initiative; HET: BOG; 2.20A {Mycobacterium
tuberculosis} SCOP: d.108.1.1
Length = 210
Score = 27.2 bits (60), Expect = 10.0
Identities = 5/43 (11%), Positives = 9/43 (20%), Gaps = 4/43 (9%)
Query: 35 PPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTT 77
P ++ P + PP P +
Sbjct: 4 PTSAGQADDALVRLARER----FDLPDQVRRLARPPVPSLEPP 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.401
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,248,238
Number of extensions: 469250
Number of successful extensions: 7231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5044
Number of HSP's successfully gapped: 630
Length of query: 454
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 357
Effective length of database: 3,993,456
Effective search space: 1425663792
Effective search space used: 1425663792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)