RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4168
(454 letters)
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 225 bits (575), Expect = 7e-71
Identities = 76/324 (23%), Positives = 146/324 (45%), Gaps = 29/324 (8%)
Query: 147 RLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRA 206
+++DSK +QN+ I S + + EI++ I ++ +V++ +Q + E++ ++
Sbjct: 5 KVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSE 64
Query: 207 HLASNSDLQLDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFL 266
DL + EQF + +P R+ +F+ FS+ + I ++ ++ + CE L
Sbjct: 65 LKEEYDDL--AESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEEL 122
Query: 267 MKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRT 326
KSE+ ++ + L +GN+MN G+R A GF + L KL+D +S D +TLLHF+
Sbjct: 123 RKSENFSSLLELTLLVGNYMNAGSR-NAGAFGFNISFLCKLRDTKSADQKMTLLHFLAEL 181
Query: 327 YLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPD 386
+ L E V++A+ V +++ L + K++ V + + D
Sbjct: 182 CENDHPEVLKFP---DELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNF--PAATD 236
Query: 387 HMEPFRTKMESCVKT----------------GKFKSVLKFYQYIPKGIPESDVTPKDLFM 430
+ F KM S VK +K + ++ + PK ++ ++ FM
Sbjct: 237 EKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPK-----KLSVEEFFM 291
Query: 431 LWAPFCHDFKDFWKKEQDRIIKTK 454
F + F K+ Q R +
Sbjct: 292 DLHNFRNMFLQAVKENQKRRETEE 315
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 411
Score = 197 bits (502), Expect = 3e-59
Identities = 63/429 (14%), Positives = 144/429 (33%), Gaps = 76/429 (17%)
Query: 67 PPPPPPMMGTTPHVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPINN-------LEEFTE 119
P P + L+W +L + ++ +W + + L + +
Sbjct: 3 PRPHKKLK--------QLHWEKL----DCTDNS--IWGTGKAEKFADDLYEKGVLADLEK 48
Query: 120 LFSRQVTAQRPVTRKRQQKSSKVQNVARLIDSKRSQNVGI-LAQSLHIEFSEIESAIFNM 178
F+ + + + KR++ K+ + SQ GI L + +++ I N
Sbjct: 49 AFAAR--EIKSLASKRKEDLQKIT----FLSRDISQQFGINLHMYSSLSVADLVKKILNC 102
Query: 179 DASVVSLEALQQIYDVRA--------------TDEEINLIRAHLASNSDLQ----LDKPE 220
D + ++ + + +R + + L + +
Sbjct: 103 DRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRAD 162
Query: 221 QFLADLA--DIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAI 278
Q L ++ R+ + + +KL + L +S++L+ V +
Sbjct: 163 QIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNV 222
Query: 279 ILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRTYLRNSENPLNES 338
IL++GNFMN ++ QA GF L L +L ++ NS+T L+++ + N + +
Sbjct: 223 ILAVGNFMNDTSK---QAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFL 279
Query: 339 LPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAV--TISMNKVVQESKPDHMEPFRTKME 396
E V V + + + ++ + V ++ + + SK ++ K
Sbjct: 280 ---SELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTL 336
Query: 397 SCVKTGK----------------FKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFK 440
+ + F+S++ Y F +A F +++K
Sbjct: 337 PVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSG----DKFAKISFFKKFADFINEYK 392
Query: 441 DFWKKEQDR 449
+
Sbjct: 393 KAQAQNLAA 401
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 40.6 bits (95), Expect = 5e-05
Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 23 LPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPP 69
L Q +P P P P P P T PP PPPP P PPP
Sbjct: 88 LVKNQVSPSAPAAPVPTPICPT----TTPP---PPPPPSPEAHVPPP 127
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 32.4 bits (72), Expect = 0.13
Identities = 22/184 (11%), Positives = 60/184 (32%), Gaps = 16/184 (8%)
Query: 127 AQRPVTRKRQQKSSKVQNVARLIDSKRSQNVGILAQSLH-IEFSEIESAIFNMDASVVSL 185
A+ TR RQ++ + ++ + + + R QN + +++L + ++ + + + S ++
Sbjct: 1 ARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAV 60
Query: 186 --EALQQIYDVRATDEEINLIRAHLASNSDLQLDK--PEQFLA-------DLADIPHFSE 234
L + ++ N + ++ + QL + + L +
Sbjct: 61 FFTYLGKA---WEVNKGTNCV-TSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDS 116
Query: 235 RIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRG 294
+ + E S+S ++ L +V L +
Sbjct: 117 TLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSK 176
Query: 295 QADG 298
G
Sbjct: 177 SPGG 180
Score = 26.6 bits (57), Expect = 8.7
Identities = 5/61 (8%), Positives = 15/61 (24%), Gaps = 5/61 (8%)
Query: 2 EYMDKRAKRRKKKETYSNIFSLPNVQA-----APPPPPPPPPLPPPPPMMGTTPPPMMGT 56
+ + + +++ + N+ P P + T +
Sbjct: 407 KLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGAISYTVLYNCLDF 466
Query: 57 P 57
P
Sbjct: 467 P 467
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 30.7 bits (69), Expect = 0.18
Identities = 9/54 (16%), Positives = 12/54 (22%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVL 81
+A P +P G P P M T +L
Sbjct: 5 SAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASML 58
Score = 29.9 bits (67), Expect = 0.31
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 21 FSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
+ P V+ P P + P + P + G P M+ + P
Sbjct: 8 AATPAVRTVPQYKYAAGVRNPQQHLN---AQPQVTMQQPAVHVQGQEPLTASMLASAP 62
Score = 27.6 bits (61), Expect = 1.8
Identities = 9/52 (17%), Positives = 12/52 (23%), Gaps = 6/52 (11%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTP 78
AA P P + P + P P + G P
Sbjct: 7 AAATPAVRTVPQYKYAAGVR--NPQQHLNAQPQVTM----QQPAVHVQGQEP 52
Score = 26.8 bits (59), Expect = 3.4
Identities = 10/49 (20%), Positives = 11/49 (22%)
Query: 35 PPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGP 83
P P + T P P P M HV G
Sbjct: 2 PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQ 50
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 29.4 bits (66), Expect = 0.37
Identities = 9/34 (26%), Positives = 9/34 (26%), Gaps = 3/34 (8%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPP 60
AA P P T P P T P
Sbjct: 16 AAASPGGAQAPATTGAAGTAPTAPQP---TAAPS 46
Score = 29.0 bits (65), Expect = 0.51
Identities = 7/36 (19%), Positives = 7/36 (19%), Gaps = 4/36 (11%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPP 62
AA P P P P P
Sbjct: 15 SAAASPGGAQAPATTGAA----GTAPTAPQPTAAPS 46
Score = 27.1 bits (60), Expect = 2.2
Identities = 5/44 (11%), Positives = 6/44 (13%), Gaps = 12/44 (27%)
Query: 29 APPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
+ P P P P P
Sbjct: 15 SAAASPGGAQAPATTG------------AAGTAPTAPQPTAAPS 46
Score = 26.7 bits (59), Expect = 2.9
Identities = 5/36 (13%), Positives = 6/36 (16%)
Query: 18 SNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPM 53
S IF + P P
Sbjct: 9 SAIFGDSAAASPGGAQAPATTGAAGTAPTAPQPTAA 44
Score = 25.5 bits (56), Expect = 7.0
Identities = 4/25 (16%), Positives = 5/25 (20%)
Query: 24 PNVQAAPPPPPPPPPLPPPPPMMGT 48
A P P P +
Sbjct: 22 GAQAPATTGAAGTAPTAPQPTAAPS 46
>d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP
(histamine-releasing factor) {Plasmodium knowlesi
[TaxId: 5850]}
Length = 171
Score = 29.7 bits (67), Expect = 0.44
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 14/64 (21%)
Query: 381 QESKPDHMEPFRTKMESCVKT--GKFKSVLKFY---QYIPKGI------PESDVTPKDLF 429
+E KPD ++ F+TK + +K F +FY +VTP F
Sbjct: 103 EEKKPDRVDVFKTKAQPLIKHILTNFDD-FEFYMGESLDMDAGLTYSYYKGEEVTP--RF 159
Query: 430 MLWA 433
+ +
Sbjct: 160 VYIS 163
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment
{Cow (Bos taurus) [TaxId: 9913]}
Length = 336
Score = 30.2 bits (68), Expect = 0.54
Identities = 9/72 (12%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 215 QLDKPEQFLA--DLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHL 272
+L + E+F+ + A I ++ ++ D+ L+ + ++N + L+
Sbjct: 1 RLAELEEFINGPNNAHIQ----QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY 56
Query: 273 KKVIAIILSLGN 284
+ + +
Sbjct: 57 QAAVDGARKANS 68
>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 196
Score = 29.0 bits (63), Expect = 0.77
Identities = 11/108 (10%), Positives = 18/108 (16%), Gaps = 9/108 (8%)
Query: 16 TYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMG 75
T+S F + Q P +
Sbjct: 65 TWSPPFESEDSQKHNQSEYEDSAGECCSC-----PKTDSQILKELEESSFRKTFEDYLHN 119
Query: 76 TTPHVLGPLYWTRLIVSPEIPSDTTPLWKELE----EVPINNLEEFTE 119
L ++ E + I+ L FT
Sbjct: 120 VVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTG 167
>d1s48a_ e.8.1.4 (A:) Viral RNA polymerase {Bovine viral diarrhea
virus [TaxId: 11099]}
Length = 588
Score = 29.1 bits (65), Expect = 1.5
Identities = 9/55 (16%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 95 IPSDTTPLWKELEEVPINNLEEFTELFSRQVTAQRPVTRKRQQKSSKVQNVARLI 149
I + + LE++PI + T+ F + + + + +++ ++ N I
Sbjct: 48 IGTIMSSAGIRLEKLPIVRAQTDTKTFHEAIRDK--IDKSENRQNPELHNKLLEI 100
>d1vh6a_ a.24.19.1 (A:) Flagellar export chaperone FliS {Bacillus
subtilis [TaxId: 1423]}
Length = 102
Score = 27.1 bits (60), Expect = 1.5
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 264 EFLMKSEHLKKVIAIILSLGNFMNGG 289
+ K+E+L K II L +N
Sbjct: 29 DMERKNENLIKAQNIIQELNFTLNRN 54
>d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor protein
TCTP (histamine-releasing factor) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 172
Score = 27.8 bits (62), Expect = 1.8
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 17/72 (23%)
Query: 376 MNKVV---QESKPDHMEPFRTKMESCVKT--GKFKSVLKFYQ---YIPKGI------PES 421
M + +E +P+ ++PF T +K FK+ +F+ P G+ E
Sbjct: 96 MKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKN-YQFFIGENMNPDGMVALLDYRED 154
Query: 422 DVTPKDLFMLWA 433
VTP + +
Sbjct: 155 GVTPY--MIFFK 164
>d1aoza3 b.6.1.3 (A:339-552) Ascorbate oxidase {Zucchini (Cucurbita
pepo var. medullosa) [TaxId: 3663]}
Length = 214
Score = 28.3 bits (62), Expect = 1.8
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 33 PPPPPPLPPPPPMMGTTPPPMMGTPPPP 60
+P G T ++ P P
Sbjct: 187 VEKVGRIPTKALACGGTAKSLINNPKNP 214
>d1tzpa_ d.65.1.3 (A:) D-alanyl-D-alanine-endopeptidase MepA
{Escherichia coli [TaxId: 562]}
Length = 255
Score = 28.3 bits (63), Expect = 1.9
Identities = 9/38 (23%), Positives = 9/38 (23%), Gaps = 13/38 (34%)
Query: 27 QAAPPP-------------PPPPPPLPPPPPMMGTTPP 51
Q PP PP P P PP
Sbjct: 207 QPLPPSGDGCGAELQSWFEPPKPGTTKPEKKTPPPLPP 244
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase)
{Basidomycetos fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 357
Score = 28.1 bits (62), Expect = 2.3
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 32 PPPPPPPLPPPPPMMGTTPPPMMGT-PPPPPPMMGTPPPP 70
P P P P T P + + P P + T P
Sbjct: 294 PVPKPATGQPAMFPASTGPQDLELSCPSERFPTLTTQPGA 333
Score = 26.9 bits (59), Expect = 5.2
Identities = 12/63 (19%), Positives = 16/63 (25%), Gaps = 10/63 (15%)
Query: 31 PPPPPPPPLPPPPP-------MMGT---TPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHV 80
P P P P P + + P + T P + P M
Sbjct: 294 PVPKPATGQPAMFPASTGPQDLELSCPSERFPTLTTQPGASQSLIAHCPDGSMSCPGVQF 353
Query: 81 LGP 83
GP
Sbjct: 354 NGP 356
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus
[TaxId: 274]}
Length = 170
Score = 26.8 bits (58), Expect = 3.8
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 25 NVQAAPPPPPPPPPLPPPP 43
+ A PP PPP LP P
Sbjct: 141 LYRGAAPPLPPPEALPKGP 159
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 26.1 bits (57), Expect = 4.0
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 27 QAAPPPPPPPPPLPPPPPMMGTTPPPMM 54
+++ PP P P P ++
Sbjct: 6 ESSGPPRPSRGPAAAQGSAAAPAEPKII 33
>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 107
Score = 26.0 bits (57), Expect = 4.3
Identities = 9/89 (10%), Positives = 19/89 (21%), Gaps = 17/89 (19%)
Query: 65 GTPPPPPPMMGTTPHVLGPLY-----------------WTRLIVSPEIPSDTTPLWKELE 107
TP P +G L ++ W + +T
Sbjct: 19 KTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTR 78
Query: 108 EVPINNLEEFTELFSRQVTAQRPVTRKRQ 136
+ + + P + R+
Sbjct: 79 RHYERLILPYERFIKGEEDKPLPPIKPRK 107
>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 196
Score = 26.9 bits (59), Expect = 4.4
Identities = 5/39 (12%), Positives = 6/39 (15%)
Query: 34 PPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPP 72
P TP + G P
Sbjct: 32 ENRTEAPEETEAERETPSAINGNPSWHLADSPAVNGATG 70
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 25.9 bits (57), Expect = 4.9
Identities = 4/24 (16%), Positives = 6/24 (25%)
Query: 28 AAPPPPPPPPPLPPPPPMMGTTPP 51
++ P P P P
Sbjct: 5 SSGAPAEPAAPKSGEAETPPKHPG 28
Score = 25.2 bits (55), Expect = 7.9
Identities = 4/20 (20%), Positives = 5/20 (25%)
Query: 27 QAAPPPPPPPPPLPPPPPMM 46
P PP P +
Sbjct: 10 AEPAAPKSGEAETPPKHPGV 29
>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 303
Score = 27.0 bits (60), Expect = 5.6
Identities = 10/35 (28%), Positives = 10/35 (28%), Gaps = 2/35 (5%)
Query: 16 TYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTP 50
Y NIFS VQ P G P
Sbjct: 2 EYQNIFS--QVQVRGPADLGMTEDVNLANRSGVGP 34
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 177
Score = 26.3 bits (58), Expect = 6.4
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 25 NVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTP 57
++ PPP LPPPP PP M P
Sbjct: 10 DLLTELPPPITDLTLPPPPL---VIPPERMLVP 39
>d1hfua2 b.6.1.3 (A:132-303) Laccase {Inky cap fungus (Coprinus
cinereus) [TaxId: 5346]}
Length = 172
Score = 25.8 bits (56), Expect = 7.4
Identities = 4/17 (23%), Positives = 5/17 (29%)
Query: 29 APPPPPPPPPLPPPPPM 45
A P P P +
Sbjct: 156 AANADPTTSANPNPAQL 172
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 193
Score = 26.0 bits (57), Expect = 7.4
Identities = 19/123 (15%), Positives = 42/123 (34%), Gaps = 6/123 (4%)
Query: 203 LIRAHLASNSDLQ--LDKPEQFLADLA-DIPHFSERIACFMFEADFSDSIALIDSKLNNI 259
L+ A S + L + + D+ DIPH +A + + + +
Sbjct: 71 LLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREIT 130
Query: 260 KSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRS--KDNSV 317
K + + L +++ ++ L +A E LP+ +D+ + + V
Sbjct: 131 KPLRPLGKAASLLLEILGLLCKSMG-PKKVGTLWREAGLSWKEFLPEGQDIGAFVAEQKV 189
Query: 318 TLL 320
Sbjct: 190 EYT 192
>d1cnt1_ a.26.1.1 (1:) Ciliary neurotrophic factor (CNTF) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 25.9 bits (57), Expect = 9.0
Identities = 4/27 (14%), Positives = 6/27 (22%)
Query: 18 SNIFSLPNVQAAPPPPPPPPPLPPPPP 44
I L + P +P
Sbjct: 111 YQIEELMILLEYKIPRNEADGMPINVG 137
>d1n7va_ b.126.1.1 (A:) Adsorption protein p2 {Bacteriophage prd1
[TaxId: 10658]}
Length = 555
Score = 26.2 bits (57), Expect = 9.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 20 IFSLPNVQAAPPPPPPPPPLPP---PPPMMG 47
IF P + P PP PPP+ P P P +G
Sbjct: 191 IFDRPVTEPNPNWPPLPPPVIPIIYPTPALG 221
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.401
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,765,704
Number of extensions: 92087
Number of successful extensions: 741
Number of sequences better than 10.0: 1
Number of HSP's gapped: 587
Number of HSP's successfully gapped: 64
Length of query: 454
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 366
Effective length of database: 1,199,356
Effective search space: 438964296
Effective search space used: 438964296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)