BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy417
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FB1|A Chain A, Crystal Structure Of Human Gtp Cyclohydrolase I
pdb|1FB1|B Chain B, Crystal Structure Of Human Gtp Cyclohydrolase I
pdb|1FB1|C Chain C, Crystal Structure Of Human Gtp Cyclohydrolase I
pdb|1FB1|D Chain D, Crystal Structure Of Human Gtp Cyclohydrolase I
pdb|1FB1|E Chain E, Crystal Structure Of Human Gtp Cyclohydrolase I
Length = 196
Score = 311 bits (796), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 142/183 (77%), Positives = 164/183 (89%)
Query: 57 LPDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDEDHD 116
LP++ A+Y +L +LGENP RQGLLKTP RAA AM FFTKGY +T+ +VLNDA+FDEDHD
Sbjct: 14 LPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDAIFDEDHD 73
Query: 117 EMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTK 176
EMV+VKDI+MFSMCEHHLVPF GKV IGYLP K++LGLSKLARIVEIYSRRLQVQERLTK
Sbjct: 74 EMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTK 133
Query: 177 QIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLNL 236
QIA+A+T+A++PAGV VVVE HMCMVMRGVQK+NSKTVTSTMLG FR+DPKTREEFL L
Sbjct: 134 QIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKTREEFLTL 193
Query: 237 VNT 239
+ +
Sbjct: 194 IRS 196
>pdb|1IS7|A Chain A, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS7|B Chain B, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS7|C Chain C, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS7|D Chain D, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS7|E Chain E, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS7|F Chain F, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS7|G Chain G, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS7|H Chain H, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS7|I Chain I, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS7|J Chain J, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS8|A Chain A, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1IS8|B Chain B, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1IS8|C Chain C, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1IS8|D Chain D, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1IS8|E Chain E, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1IS8|F Chain F, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1IS8|G Chain G, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1IS8|H Chain H, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1IS8|I Chain I, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1IS8|J Chain J, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1WPL|A Chain A, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
pdb|1WPL|B Chain B, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
pdb|1WPL|C Chain C, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
pdb|1WPL|D Chain D, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
pdb|1WPL|E Chain E, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
pdb|1WPL|F Chain F, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
pdb|1WPL|G Chain G, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
pdb|1WPL|H Chain H, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
pdb|1WPL|I Chain I, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
pdb|1WPL|J Chain J, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
Length = 230
Score = 308 bits (789), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 140/183 (76%), Positives = 164/183 (89%)
Query: 57 LPDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDEDHD 116
LP++ A+Y +L +LGE+P RQGLLKTP RAA AM FFTKGY +T+ +VLNDA+FDEDHD
Sbjct: 48 LPNLAAAYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGYQETISDVLNDAIFDEDHD 107
Query: 117 EMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTK 176
EMV+VKDI+MFSMCEHHLVPF G+V IGYLP K++LGLSKLARIVEIYSRRLQVQERLTK
Sbjct: 108 EMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTK 167
Query: 177 QIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLNL 236
QIA+A+T+A+QPAGV VV+E HMCMVMRGVQK+NSKTVTSTMLG FR+DPKTREEFL L
Sbjct: 168 QIAVAITEALQPAGVGVVIEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKTREEFLTL 227
Query: 237 VNT 239
+ +
Sbjct: 228 IRS 230
>pdb|1WM9|A Chain A, Structure Of Gtp Cyclohydrolase I From Thermus
Thermophilus Hb8
pdb|1WM9|B Chain B, Structure Of Gtp Cyclohydrolase I From Thermus
Thermophilus Hb8
pdb|1WM9|C Chain C, Structure Of Gtp Cyclohydrolase I From Thermus
Thermophilus Hb8
pdb|1WM9|D Chain D, Structure Of Gtp Cyclohydrolase I From Thermus
Thermophilus Hb8
pdb|1WM9|E Chain E, Structure Of Gtp Cyclohydrolase I From Thermus
Thermophilus Hb8
pdb|1WUQ|A Chain A, Structure Of Gtp Cyclohydrolase I Complexed With 8-Oxo-Gtp
pdb|1WUQ|B Chain B, Structure Of Gtp Cyclohydrolase I Complexed With 8-Oxo-Gtp
pdb|1WUQ|C Chain C, Structure Of Gtp Cyclohydrolase I Complexed With 8-Oxo-Gtp
pdb|1WUQ|D Chain D, Structure Of Gtp Cyclohydrolase I Complexed With 8-Oxo-Gtp
pdb|1WUQ|E Chain E, Structure Of Gtp Cyclohydrolase I Complexed With 8-Oxo-Gtp
pdb|1WUR|A Chain A, Structure Of Gtp Cyclohydrolase I Complexed With
8-Oxo-Dgtp
pdb|1WUR|B Chain B, Structure Of Gtp Cyclohydrolase I Complexed With
8-Oxo-Dgtp
pdb|1WUR|C Chain C, Structure Of Gtp Cyclohydrolase I Complexed With
8-Oxo-Dgtp
pdb|1WUR|D Chain D, Structure Of Gtp Cyclohydrolase I Complexed With
8-Oxo-Dgtp
pdb|1WUR|E Chain E, Structure Of Gtp Cyclohydrolase I Complexed With
8-Oxo-Dgtp
Length = 220
Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/179 (62%), Positives = 139/179 (77%)
Query: 57 LPDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDEDHD 116
L + A L +GE+P R+GLLKTPER AKA F T+GY Q LEEV+ AVF +
Sbjct: 35 LERLQALAAEWLQVIGEDPGREGLLKTPERVAKAWAFLTRGYRQRLEEVVGGAVFPAEGS 94
Query: 117 EMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTK 176
EMVVVK +E +SMCEHHL+PF+GKV IGY+P KILGLSK ARIV++++RRLQVQERL
Sbjct: 95 EMVVVKGVEFYSMCEHHLLPFFGKVHIGYIPDGKILGLSKFARIVDMFARRLQVQERLAV 154
Query: 177 QIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLN 235
QIA A+ + ++P GV VVVEGVH+CM+MRGV+K +S+TVTS MLG FR++ KTREEFL+
Sbjct: 155 QIAEAIQEVLEPQGVGVVVEGVHLCMMMRGVEKQHSRTVTSAMLGVFRENQKTREEFLS 213
>pdb|4DU6|A Chain A, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
pdb|4DU6|B Chain B, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
pdb|4DU6|C Chain C, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
pdb|4DU6|D Chain D, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
pdb|4DU6|E Chain E, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
Length = 223
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 80/122 (65%)
Query: 116 DEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLT 175
DEMV V+DI + S CEHH V GK ++ Y+P ++GLSK+ RIV+ +++R QVQERLT
Sbjct: 98 DEMVTVRDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLT 157
Query: 176 KQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLN 235
+QI +A+ + VAV ++ VH C+ RG++ S T T+++ G F+ TR+EFL
Sbjct: 158 QQILLALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRQEFLR 217
Query: 236 LV 237
V
Sbjct: 218 AV 219
>pdb|1GTP|A Chain A, Gtp Cyclohydrolase I
pdb|1GTP|B Chain B, Gtp Cyclohydrolase I
pdb|1GTP|C Chain C, Gtp Cyclohydrolase I
pdb|1GTP|D Chain D, Gtp Cyclohydrolase I
pdb|1GTP|E Chain E, Gtp Cyclohydrolase I
pdb|1GTP|F Chain F, Gtp Cyclohydrolase I
pdb|1GTP|G Chain G, Gtp Cyclohydrolase I
pdb|1GTP|H Chain H, Gtp Cyclohydrolase I
pdb|1GTP|I Chain I, Gtp Cyclohydrolase I
pdb|1GTP|J Chain J, Gtp Cyclohydrolase I
pdb|1GTP|K Chain K, Gtp Cyclohydrolase I
pdb|1GTP|L Chain L, Gtp Cyclohydrolase I
pdb|1GTP|M Chain M, Gtp Cyclohydrolase I
pdb|1GTP|N Chain N, Gtp Cyclohydrolase I
pdb|1GTP|O Chain O, Gtp Cyclohydrolase I
pdb|1GTP|P Chain P, Gtp Cyclohydrolase I
pdb|1GTP|Q Chain Q, Gtp Cyclohydrolase I
pdb|1GTP|R Chain R, Gtp Cyclohydrolase I
pdb|1GTP|S Chain S, Gtp Cyclohydrolase I
pdb|1GTP|T Chain T, Gtp Cyclohydrolase I
pdb|1FBX|A Chain A, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|B Chain B, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|C Chain C, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|D Chain D, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|E Chain E, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|F Chain F, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|G Chain G, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|H Chain H, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|I Chain I, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|J Chain J, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|K Chain K, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|L Chain L, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|M Chain M, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|N Chain N, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|O Chain O, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
Length = 221
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 79/122 (64%)
Query: 116 DEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLT 175
DEMV V+DI + S CEHH V GK ++ Y+P ++GLSK+ RIV+ +++R QVQERLT
Sbjct: 96 DEMVTVRDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLT 155
Query: 176 KQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLN 235
+QI IA+ + VAV ++ VH C+ RG++ S T T+++ G F+ TR EFL
Sbjct: 156 QQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLR 215
Query: 236 LV 237
V
Sbjct: 216 AV 217
>pdb|1N3S|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|B Chain B, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|C Chain C, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|D Chain D, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|E Chain E, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|G Chain G, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|H Chain H, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|I Chain I, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|J Chain J, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
Length = 221
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 78/122 (63%)
Query: 116 DEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLT 175
DEMV V+DI + S CEH V GK ++ Y+P ++GLSK+ RIV+ +++R QVQERLT
Sbjct: 96 DEMVTVRDITLTSTCEHSFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLT 155
Query: 176 KQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLN 235
+QI IA+ + VAV ++ VH C+ RG++ S T T+++ G F+ TR EFL
Sbjct: 156 QQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLR 215
Query: 236 LV 237
V
Sbjct: 216 AV 217
>pdb|1A8R|A Chain A, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|B Chain B, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|C Chain C, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|D Chain D, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|E Chain E, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|F Chain F, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|G Chain G, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|H Chain H, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|I Chain I, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|J Chain J, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|K Chain K, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|L Chain L, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|M Chain M, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|N Chain N, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|O Chain O, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1N3R|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|B Chain B, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|C Chain C, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|D Chain D, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|E Chain E, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|G Chain G, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|H Chain H, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|I Chain I, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|J Chain J, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|K Chain K, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|L Chain L, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|M Chain M, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|N Chain N, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|O Chain O, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
Length = 221
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 78/122 (63%)
Query: 116 DEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLT 175
DEMV V+DI + S CE H V GK ++ Y+P ++GLSK+ RIV+ +++R QVQERLT
Sbjct: 96 DEMVTVRDITLTSTCESHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLT 155
Query: 176 KQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLN 235
+QI IA+ + VAV ++ VH C+ RG++ S T T+++ G F+ TR EFL
Sbjct: 156 QQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLR 215
Query: 236 LV 237
V
Sbjct: 216 AV 217
>pdb|1N3T|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|G Chain G, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|H Chain H, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|I Chain I, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|J Chain J, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|K Chain K, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|L Chain L, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|M Chain M, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|N Chain N, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|O Chain O, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|B Chain B, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|C Chain C, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|D Chain D, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|E Chain E, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
Length = 221
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 78/122 (63%)
Query: 116 DEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLT 175
DEMV V+DI + S CEHH V GK ++ Y+P ++GLSK+ RIV+ +++R QVQERLT
Sbjct: 96 DEMVTVRDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLT 155
Query: 176 KQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLN 235
+QI IA+ + VAV ++ VH + RG++ S T T+++ G F+ TR EFL
Sbjct: 156 QQILIALQTLLGTNNVAVSIDAVHYSVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLR 215
Query: 236 LV 237
V
Sbjct: 216 AV 217
>pdb|1A9C|A Chain A, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|B Chain B, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|C Chain C, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|D Chain D, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|E Chain E, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|F Chain F, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|G Chain G, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|H Chain H, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|I Chain I, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|J Chain J, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|K Chain K, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|L Chain L, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|M Chain M, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|N Chain N, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|O Chain O, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
Length = 221
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 78/122 (63%)
Query: 116 DEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLT 175
DEMV V+DI + S EHH V GK ++ Y+P ++GLSK+ RIV+ +++R QVQERLT
Sbjct: 96 DEMVTVRDITLTSTSEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLT 155
Query: 176 KQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLN 235
+QI IA+ + VAV ++ VH C+ RG++ S T T+++ G F+ TR EFL
Sbjct: 156 QQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLR 215
Query: 236 LV 237
V
Sbjct: 216 AV 217
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 59 DMTASYKRLLGALGENPDRQGLLK--TPERAAKAMLFFTKGYDQTLEEVLNDAVFDEDHD 116
D A YK+ GA+ +N GLL+ T + A LFFT G QT E N ++ + +
Sbjct: 223 DAFAKYKKATGAVADN--NTGLLRLTTAQYANLQSLFFTIG-GQTFELTANAQIWPRNLN 279
Query: 117 EMV 119
+
Sbjct: 280 TAI 282
>pdb|3D54|D Chain D, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|H Chain H, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|L Chain L, Stucture Of Purlqs From Thermotoga Maritima
Length = 213
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 59 DMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLN 107
D+ S +R+ G L E+ + GL+ PERA + ++ G + + +LN
Sbjct: 162 DVNGSDERIAGVLNESGNVFGLMPHPERAVEELIGGEDG-KKVFQSILN 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,756,785
Number of Sequences: 62578
Number of extensions: 259586
Number of successful extensions: 682
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 14
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)