Query psy417
Match_columns 240
No_of_seqs 164 out of 1170
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 18:39:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0302 FolE GTP cyclohydrolas 100.0 1.3E-83 2.9E-88 554.1 19.6 184 57-240 12-195 (195)
2 TIGR00063 folE GTP cyclohydrol 100.0 1.2E-81 2.7E-86 540.4 20.2 179 60-238 1-179 (180)
3 PLN03044 GTP cyclohydrolase I; 100.0 1.9E-81 4.1E-86 542.4 19.9 180 60-239 1-186 (188)
4 cd00642 GTP_cyclohydro1 GTP cy 100.0 2.4E-80 5.1E-85 534.5 20.6 182 57-238 3-184 (185)
5 PRK09347 folE GTP cyclohydrola 100.0 2.3E-80 4.9E-85 535.8 20.3 182 57-238 5-187 (188)
6 PRK12606 GTP cyclohydrolase I; 100.0 4.6E-80 1E-84 538.4 20.9 181 58-239 20-200 (201)
7 PF01227 GTP_cyclohydroI: GTP 100.0 9.9E-80 2.2E-84 528.2 16.7 178 60-238 1-179 (179)
8 PTZ00484 GTP cyclohydrolase I; 100.0 4.4E-78 9.5E-83 542.4 22.4 186 53-238 69-258 (259)
9 KOG2698|consensus 100.0 3.3E-78 7.2E-83 526.4 15.2 197 44-240 51-247 (247)
10 PLN02531 GTP cyclohydrolase I 100.0 7.2E-72 1.6E-76 535.0 20.7 206 34-239 7-234 (469)
11 PLN02531 GTP cyclohydrolase I 100.0 8.9E-71 1.9E-75 527.5 20.8 185 54-239 263-463 (469)
12 PRK13258 7-cyano-7-deazaguanin 99.9 1.7E-24 3.8E-29 174.5 10.2 83 114-196 13-95 (114)
13 TIGR03139 QueF-II 7-cyano-7-de 97.1 0.0048 1E-07 50.4 9.7 87 110-196 8-97 (115)
14 COG0780 Enzyme related to GTP 96.3 0.025 5.4E-07 48.1 8.3 76 123-198 46-121 (149)
15 PF14489 QueF: QueF-like prote 96.2 0.0094 2E-07 45.8 4.8 61 136-196 1-61 (80)
16 cd00651 TFold Tunnelling fold 96.2 0.087 1.9E-06 40.9 10.3 100 118-217 3-118 (122)
17 PRK11792 queF 7-cyano-7-deazag 88.5 2.4 5.2E-05 39.5 8.1 78 126-210 176-253 (273)
18 TIGR03138 QueF 7-cyano-7-deaza 77.3 13 0.00028 34.7 8.0 77 126-209 178-254 (275)
19 PF08879 WRC: WRC; InterPro: 56.8 1.9 4.1E-05 30.0 -1.4 10 126-135 24-33 (46)
20 PRK00133 metG methionyl-tRNA s 49.8 1.1E+02 0.0023 31.6 9.2 133 53-189 66-227 (673)
21 KOG3203|consensus 49.8 15 0.00033 31.8 2.7 49 157-205 19-75 (165)
22 PRK11593 folB bifunctional dih 39.9 71 0.0015 25.3 5.0 51 152-202 51-103 (119)
23 PLN02224 methionine-tRNA ligas 37.9 1.4E+02 0.003 30.8 7.9 117 53-188 133-267 (616)
24 TIGR00254 GGDEF diguanylate cy 35.3 1E+02 0.0023 23.5 5.3 52 153-206 40-91 (165)
25 PF02662 FlpD: Methyl-viologen 33.9 45 0.00097 27.1 3.0 39 57-95 75-117 (124)
26 PF05997 Nop52: Nucleolar prot 33.0 35 0.00076 30.2 2.4 24 162-185 51-74 (217)
27 PF00990 GGDEF: GGDEF domain; 32.7 1.4E+02 0.0031 22.5 5.6 53 152-206 38-90 (161)
28 PRK11245 folX D-erythro-7,8-di 30.7 1.2E+02 0.0026 24.1 5.0 49 153-201 56-106 (120)
29 smart00672 CAP10 Putative lipo 28.1 45 0.00099 30.3 2.4 73 116-195 168-242 (256)
30 cd01949 GGDEF Diguanylate-cycl 26.3 2.1E+02 0.0045 21.2 5.4 39 168-206 51-89 (158)
31 TIGR02750 TraN_Ftype type-F co 25.5 45 0.00097 34.2 2.0 17 154-170 499-515 (572)
32 TIGR00525 folB dihydroneopteri 25.1 2.2E+02 0.0048 22.2 5.5 45 152-196 50-97 (116)
33 PF09334 tRNA-synt_1g: tRNA sy 24.3 1.5E+02 0.0032 28.5 5.2 133 51-189 61-225 (391)
34 KOG2036|consensus 24.3 34 0.00074 36.4 0.9 37 195-238 732-768 (1011)
35 cd00392 Ribosomal_L13 Ribosoma 23.8 1.2E+02 0.0025 24.6 3.8 39 167-205 7-53 (114)
36 TIGR00526 folB_dom FolB domain 23.0 2.3E+02 0.005 22.2 5.3 48 152-199 51-101 (118)
37 TIGR01598 holin_phiLC3 holin, 22.8 1E+02 0.0022 23.7 3.0 30 56-85 41-72 (78)
38 PF07893 DUF1668: Protein of u 22.8 36 0.00078 32.0 0.7 23 134-158 218-241 (342)
39 PF07809 RTP801_C: RTP801 C-te 22.2 2.1E+02 0.0045 23.6 4.9 71 167-237 13-91 (116)
40 cd00490 Met_repressor_MetJ Met 21.9 66 0.0014 25.6 1.9 20 58-77 82-101 (103)
41 KOG2965|consensus 21.9 1.1E+02 0.0023 29.2 3.5 45 164-208 77-123 (318)
42 PF01340 MetJ: Met Apo-repress 21.5 50 0.0011 26.4 1.1 19 59-77 83-101 (104)
43 PRK00745 4-oxalocrotonate taut 21.4 1.6E+02 0.0035 20.0 3.7 29 168-196 14-44 (62)
44 PTZ00397 macrophage migration 21.3 4E+02 0.0086 20.7 6.4 64 170-237 16-81 (116)
45 TIGR01077 L13_A_E ribosomal pr 21.1 94 0.002 26.2 2.8 35 167-205 6-40 (142)
46 KOG3235|consensus 21.0 1.7E+02 0.0036 25.9 4.4 37 161-197 79-115 (193)
47 PRK12268 methionyl-tRNA synthe 21.0 5.7E+02 0.012 25.3 8.7 129 53-186 68-226 (556)
48 PF02152 FolB: Dihydroneopteri 20.4 2.2E+02 0.0048 21.8 4.6 47 150-196 46-95 (113)
No 1
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism]
Probab=100.00 E-value=1.3e-83 Score=554.10 Aligned_cols=184 Identities=57% Similarity=0.940 Sum_probs=178.8
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHhcCcCchhHhhhccccccCCCCccEEEeeeeeeeecCccccc
Q psy417 57 LPDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDEDHDEMVVVKDIEMFSMCEHHLVP 136 (240)
Q Consensus 57 ~~~i~~av~~lL~aLGeD~~regL~~TP~RVAk~~~e~~~Gy~~~~~~~~~~~~f~~~~~~lVvv~~I~f~S~CEHHLlP 136 (240)
.++++.||++||+++||||+||||.+||+||||||.|+|+||+.+|.+......|.+..++||+|+||+|||+|||||||
T Consensus 12 ~e~~e~avr~lL~~~Gedp~reGL~~TP~RVak~~~e~f~G~~~~~~~~~l~~~fe~~~~emVlvkdI~f~S~CEHHllP 91 (195)
T COG0302 12 AERIEAAVRELLEALGEDPDREGLLETPKRVAKAYRELFSGYDEDPAEIVLEATFEEDHDEMVLVKDIEFYSLCEHHLLP 91 (195)
T ss_pred HHHHHHHHHHHHHHhCCCCCchhhhhhHHHHHHHHHHHHhhhCCChHHhhhcccccccCccEEEEeccceeeeccccccc
Confidence 34699999999999999999999999999999999999999999999877778999999999999999999999999999
Q ss_pred ceeeEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceeccccccCCceEEE
Q psy417 137 FYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVT 216 (240)
Q Consensus 137 f~G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~RGv~~~~s~t~T 216 (240)
|+|++||||||+|+|+|||||+|+||+||||||+|||||.|||++|++.|+|+||||+|+|+||||.||||++++|.|+|
T Consensus 92 f~GkahVAYiP~gkV~GlSKiaRiV~~~arR~QvQErlT~qIA~al~~~L~p~GVaVvieA~HmCm~mRGv~k~~s~t~T 171 (195)
T COG0302 92 FFGKAHVAYIPDGKVIGLSKIARIVDIFARRLQVQERLTEQIADALQEILKPRGVAVVIEAEHMCMSMRGVRKPGSSTVT 171 (195)
T ss_pred ccceEEEEEcCCCceecHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCceEEEEEEEEeeehhcCccCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeeeecCChHHHHHHHHhhhcC
Q psy417 217 STMLGQFRDDPKTREEFLNLVNTK 240 (240)
Q Consensus 217 s~~~G~F~~d~~~R~EFl~ll~~~ 240 (240)
|+++|.|++|+++|.||+++|+++
T Consensus 172 s~~~G~F~~~~~~R~efl~li~~~ 195 (195)
T COG0302 172 SALRGLFKEDAKTRAEFLRLIKGH 195 (195)
T ss_pred EeeeeeeccCHHHHHHHHHHHhcC
Confidence 999999999999999999999864
No 2
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=100.00 E-value=1.2e-81 Score=540.44 Aligned_cols=179 Identities=53% Similarity=0.841 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHhcCcCchhHhhhccccccCCCCccEEEeeeeeeeecCccccccee
Q psy417 60 MTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDEDHDEMVVVKDIEMFSMCEHHLVPFYG 139 (240)
Q Consensus 60 i~~av~~lL~aLGeD~~regL~~TP~RVAk~~~e~~~Gy~~~~~~~~~~~~f~~~~~~lVvv~~I~f~S~CEHHLlPf~G 139 (240)
+++++++||++||+||+|+||++||+||||||.++|+||..+|.+.++..+|++.+++||+|+||+|||+||||||||+|
T Consensus 1 i~~av~~iL~alGeD~~regL~~TP~Rva~~~~e~~~G~~~~~~~~~~~~~~~~~~~~mViv~~I~f~S~CEHHlLPf~G 80 (180)
T TIGR00063 1 IAGAMREILELIGEDLNREGLLETPKRVAKMYVEIFSGYDYANFPKITLAIFQEKHDEMVLVRDITFTSTCEHHLVPFDG 80 (180)
T ss_pred CHHHHHHHHHHhCCCCCccchhhCHHHHHHHHHHHHhcccCChHHHHhcccCcCCCCcEEEEeCceEEEeccccccceee
Confidence 47899999999999999999999999999999999999999999998877888888999999999999999999999999
Q ss_pred eEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceeccccccCCceEEEeeE
Q psy417 140 KVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTM 219 (240)
Q Consensus 140 ~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~RGv~~~~s~t~Ts~~ 219 (240)
++||||+|+++|+|||||+||||+||||||+|||||+|||++|++.|+|+||+|+++|+|+||.||||++.+|.|+|+++
T Consensus 81 ~~hVaYiP~~~ViGLSKl~RiV~~~arRlQiQERlT~qIa~~l~~~l~p~gV~V~ieA~H~Cm~mRGv~~~~s~t~T~a~ 160 (180)
T TIGR00063 81 KAHVAYIPKDKVIGLSKIARIVEFFARRPQVQERLTQQIAEALQEILEPNGVAVVVEATHMCMKMRGIRKPGSATVTSAL 160 (180)
T ss_pred EEEEEEecCCceecHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhCCCCEEEEEEEEEeeEeeeCeecCCCcEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCChHHHHHHHHhhh
Q psy417 220 LGQFRDDPKTREEFLNLVN 238 (240)
Q Consensus 220 ~G~F~~d~~~R~EFl~ll~ 238 (240)
+|.|++|+.+|+||+++++
T Consensus 161 ~G~f~~~~~~r~ef~~~~~ 179 (180)
T TIGR00063 161 GGLFKSDQKTRAEFLRLVR 179 (180)
T ss_pred eeEeCCCHHHHHHHHHHhc
Confidence 9999999999999999985
No 3
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=100.00 E-value=1.9e-81 Score=542.42 Aligned_cols=180 Identities=54% Similarity=0.918 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHhcCcCchhHhhhccccccC-----CCCccEEEeeeeeeeecCccc
Q psy417 60 MTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDE-----DHDEMVVVKDIEMFSMCEHHL 134 (240)
Q Consensus 60 i~~av~~lL~aLGeD~~regL~~TP~RVAk~~~e~~~Gy~~~~~~~~~~~~f~~-----~~~~lVvv~~I~f~S~CEHHL 134 (240)
++++|+.||++||+||+|+||++||+||||||.++|+||..+|.+.++..+|++ ++++||+|+||+|||+|||||
T Consensus 1 ~~~av~~iL~~lGeD~~regL~~TP~Rva~~~~e~~~G~~~~~~~~~~~~~~~~~~~~~~~~~mViv~~I~f~S~CEHHl 80 (188)
T PLN03044 1 MEQAVRTILECLGEDVEREGLLDTPKRVAKALLFMTQGYDQDPEVVLGTALFHEPEVHDGHEEMVVVRDIDIHSTCEETM 80 (188)
T ss_pred CHHHHHHHHHHhCCCCCccchhhHHHHHHHHHHHHHhcccCCHHHHhhhcccccccccCCCCcEEEEeCceEEEeccccc
Confidence 478999999999999999999999999999999999999999999998778875 679999999999999999999
Q ss_pred ccceeeEEEEEeCC-CccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceeccccccCCce
Q psy417 135 VPFYGKVSIGYLPC-KKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSK 213 (240)
Q Consensus 135 lPf~G~~hIaYiP~-~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~RGv~~~~s~ 213 (240)
|||+|++||||+|+ ++|+|||||+||||+||||||+|||||+|||++|++.|+|+||+|+++|+|+||.||||++.+|.
T Consensus 81 lPf~G~~hIaYiP~~~~ViGLSKl~RiV~~~arRlQiQERLT~qIa~~l~~~l~p~gVaV~ieA~H~Cm~mRGv~~~~s~ 160 (188)
T PLN03044 81 VPFTGRIHVGYIPNAGVILGLSKLARIAEVYARRLQTQERLTRQIADAIVESVEPLGVMVVVEAAHFCMVMRGVEKHGAS 160 (188)
T ss_pred cceeeeEEEEEECCCCccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhhCCCceEEEEEEEEeeehhhCccCCCCe
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeEeeeecCChHHHHHHHHhhhc
Q psy417 214 TVTSTMLGQFRDDPKTREEFLNLVNT 239 (240)
Q Consensus 214 t~Ts~~~G~F~~d~~~R~EFl~ll~~ 239 (240)
|+|++++|.|++|+.+|+||+++++.
T Consensus 161 t~T~~~~G~F~~d~~~r~ef~~~i~~ 186 (188)
T PLN03044 161 TTTSAVRGCFASNPKLRAEFFRIIRG 186 (188)
T ss_pred EEEEEeeeEeCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999965
No 4
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=100.00 E-value=2.4e-80 Score=534.48 Aligned_cols=182 Identities=66% Similarity=1.066 Sum_probs=174.7
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHhcCcCchhHhhhccccccCCCCccEEEeeeeeeeecCccccc
Q psy417 57 LPDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDEDHDEMVVVKDIEMFSMCEHHLVP 136 (240)
Q Consensus 57 ~~~i~~av~~lL~aLGeD~~regL~~TP~RVAk~~~e~~~Gy~~~~~~~~~~~~f~~~~~~lVvv~~I~f~S~CEHHLlP 136 (240)
.++++.++++||++||+||+|+||++||+||||||.++|+||..+|...+...+|++++++||+|+||+|+|+|||||||
T Consensus 3 ~~~~e~av~~lL~alGeD~~regL~~TP~Rva~~~~e~~~G~~~~~~~~~~~~~~~~~~~~mV~v~~I~f~S~CEHHllP 82 (185)
T cd00642 3 LEKIAAAVREILELLGEDPNREGLLETPERVAKAYQEITSGYDQALNDPKNTAIFDEDHDEMVIVKDITLFSMCEHHLVP 82 (185)
T ss_pred HHHHHHHHHHHHHHhCCCCCccchhhHHHHHHHHHHHHhcCcCCCchhHHhhccccCCCCcEEEEeCeeEEEeccccccc
Confidence 45799999999999999999999999999999999999999999965555556788888999999999999999999999
Q ss_pred ceeeEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceeccccccCCceEEE
Q psy417 137 FYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVT 216 (240)
Q Consensus 137 f~G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~RGv~~~~s~t~T 216 (240)
|+|++||||+|+|+|+|||||+||||+||||||+|||||+|||++|++.|+|+||+|+++|+|+||.||||++.+|+|+|
T Consensus 83 f~G~~~VaYiP~~~ViGLSKl~RiV~~~arRlQiQERLt~qIa~al~~~l~~~gVaV~i~A~H~Cm~~RGv~~~~s~t~T 162 (185)
T cd00642 83 FYGKVHIAYIPKDKVIGLSKLARIVEFFSRRLQVQERLTKQIAVAIQEILGPQGVAVVIEATHMCMVMRGVRKPGSKTVT 162 (185)
T ss_pred eEEEEEEEEecCCeeeeHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhCCCcEEEEEEEEEeeehhcCcccCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeeeecCChHHHHHHHHhhh
Q psy417 217 STMLGQFRDDPKTREEFLNLVN 238 (240)
Q Consensus 217 s~~~G~F~~d~~~R~EFl~ll~ 238 (240)
++++|+|.+|+++|+||+++++
T Consensus 163 ~a~~G~F~~~~~~r~ef~~~~~ 184 (185)
T cd00642 163 SAMLGVFKEDPKTREEFLRLIR 184 (185)
T ss_pred EEeEEEECCCHHHHHHHHHHhc
Confidence 9999999999999999999985
No 5
>PRK09347 folE GTP cyclohydrolase I; Provisional
Probab=100.00 E-value=2.3e-80 Score=535.75 Aligned_cols=182 Identities=54% Similarity=0.866 Sum_probs=174.9
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHhcCcCchhHhhhccccccC-CCCccEEEeeeeeeeecCcccc
Q psy417 57 LPDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDE-DHDEMVVVKDIEMFSMCEHHLV 135 (240)
Q Consensus 57 ~~~i~~av~~lL~aLGeD~~regL~~TP~RVAk~~~e~~~Gy~~~~~~~~~~~~f~~-~~~~lVvv~~I~f~S~CEHHLl 135 (240)
.++++++|+.||++||+||+|+||++||+||||||.++|+||..+|.+.++..+|++ .+++||+|+||+|+|+||||||
T Consensus 5 ~~~~~~~v~~iL~~lGeD~~regL~~TP~Rvak~~~e~~~Gy~~~~~~~~~~~~~~~~~~~~mV~v~~I~f~S~CEHHll 84 (188)
T PRK09347 5 KEKIEEAVREILEALGEDPDREGLLDTPKRVAKMYEELFSGYANDPKEVLNKTFEEEMGYDEMVLVKDITFYSMCEHHLL 84 (188)
T ss_pred HHHHHHHHHHHHHHhCCCCCccchhhhHHHHHHHHHHHHhhccCCHHHHHhhhccccCCCCceEEEeCceEEeecccccC
Confidence 457999999999999999999999999999999999999999999999887655553 4689999999999999999999
Q ss_pred cceeeEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceeccccccCCceEE
Q psy417 136 PFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTV 215 (240)
Q Consensus 136 Pf~G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~RGv~~~~s~t~ 215 (240)
||+|++||||+|+++|+|||||+|||++||||||+|||||+|||++|++.|+|+||+|+++|+|+||.||||++.+|.|+
T Consensus 85 Pf~G~~hIaYiP~~~ViGLSKl~Riv~~~arRlQiQERlT~qIa~al~~~l~p~gV~V~ieA~H~Cm~~RGv~~~~s~t~ 164 (188)
T PRK09347 85 PFIGKAHVAYIPKGKVIGLSKIARIVDFFARRPQVQERLTAQIADALQEILGPRGVAVVIEAEHMCMTMRGVRKPGSKTV 164 (188)
T ss_pred ceeeEEEEEEeCCCccccHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHhhCCCceEEEEEEEEcChhhhCceeCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeEeeeecCChHHHHHHHHhhh
Q psy417 216 TSTMLGQFRDDPKTREEFLNLVN 238 (240)
Q Consensus 216 Ts~~~G~F~~d~~~R~EFl~ll~ 238 (240)
|++++|+|++|+++|+||+++++
T Consensus 165 T~~~~G~F~~~~~~r~ef~~~i~ 187 (188)
T PRK09347 165 TSALRGLFKTDPATRAEFLSLIR 187 (188)
T ss_pred EEEEEeEeCCCHHHHHHHHHHhc
Confidence 99999999999999999999985
No 6
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=100.00 E-value=4.6e-80 Score=538.38 Aligned_cols=181 Identities=57% Similarity=0.984 Sum_probs=176.2
Q ss_pred hHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHhcCcCchhHhhhccccccCCCCccEEEeeeeeeeecCcccccc
Q psy417 58 PDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDEDHDEMVVVKDIEMFSMCEHHLVPF 137 (240)
Q Consensus 58 ~~i~~av~~lL~aLGeD~~regL~~TP~RVAk~~~e~~~Gy~~~~~~~~~~~~f~~~~~~lVvv~~I~f~S~CEHHLlPf 137 (240)
++++++|+.||++||+||+|+||++||+||||||.++|+||..+|.+.+. ..|++++++||+|+||+|||+||||||||
T Consensus 20 ~~~~~av~~iL~alGeD~~regL~~TP~RVak~~~e~~~G~~~~~~~~~~-~~f~~~~~~mViv~~I~f~S~CEHHLLPf 98 (201)
T PRK12606 20 PALEAAVRELLEALGEDPDREGLLDTPQRVAKAMQYLCDGYEQDPAEALG-ALFDSDNDEMVIVRDIELYSLCEHHLLPF 98 (201)
T ss_pred HHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhccCCCHHHHHh-ccccCCCCcEEEEeCceEEEeccccccce
Confidence 57999999999999999999999999999999999999999999999884 67888889999999999999999999999
Q ss_pred eeeEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceeccccccCCceEEEe
Q psy417 138 YGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTS 217 (240)
Q Consensus 138 ~G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~RGv~~~~s~t~Ts 217 (240)
+|++||||+|+++|+|||||+||||+||||||+|||||+|||++|++.|+|+||+|+++|+||||.||||++.+|+|+|+
T Consensus 99 ~G~~hVaYiP~~~VvGLSKl~RiV~~~arRlQvQERLT~qIa~~l~~~l~p~GVaV~ieA~H~Cm~~RGv~~~~s~t~T~ 178 (201)
T PRK12606 99 IGVAHVAYLPGGKVLGLSKIARIVDMFARRLQIQENLTRQIATAVVTVTQARGAAVVIEAEHLCMMMRGVRKQNSRMITS 178 (201)
T ss_pred eeEEEEEEeCCCccccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhCCCcEEEEEEEEEeeEhhcCccCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeeecCChHHHHHHHHhhhc
Q psy417 218 TMLGQFRDDPKTREEFLNLVNT 239 (240)
Q Consensus 218 ~~~G~F~~d~~~R~EFl~ll~~ 239 (240)
+++|.|++|+.+|+||++++..
T Consensus 179 a~~G~F~~d~~~r~efl~~~~~ 200 (201)
T PRK12606 179 VMLGAFRDSAQTRNEFLRLIGR 200 (201)
T ss_pred EeeeEeCCCHHHHHHHHHHhcc
Confidence 9999999999999999999854
No 7
>PF01227 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: IPR020602 GTP cyclohydrolase I (3.5.4.16 from EC) catalyses the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. The comparison of the sequence of the enzyme from bacterial and eukaryotic sources shows that the structure of this enzyme has been extremely well conserved throughout evolution []. NADPH-dependent nitrile oxidoreductases are involved in the biosynthesis of queuosine, a 7-deazaguanine-modified nucleoside found in tRNA(GUN) of bacteria and eukaryotes []. This entry represents a common fold found in GTP cyclohydrolase I and NADPH-dependent nitrile oxidoreducases [].; PDB: 1A8R_E 1GTP_L 1N3R_O 1N3T_O 1FBX_I 1N3S_B 1A9C_I 1IS8_E 1IS7_G 1WPL_F ....
Probab=100.00 E-value=9.9e-80 Score=528.25 Aligned_cols=178 Identities=52% Similarity=0.896 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHhcCcCchh-HhhhccccccCCCCccEEEeeeeeeeecCcccccce
Q psy417 60 MTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTL-EEVLNDAVFDEDHDEMVVVKDIEMFSMCEHHLVPFY 138 (240)
Q Consensus 60 i~~av~~lL~aLGeD~~regL~~TP~RVAk~~~e~~~Gy~~~~-~~~~~~~~f~~~~~~lVvv~~I~f~S~CEHHLlPf~ 138 (240)
|+++|++||++||+||+|+||++||+||||||.++|+||..++ .+.+ ...|++++++||+|+||+|+|+||||||||+
T Consensus 1 ie~av~~lL~~lG~D~~regL~~TP~Rva~~~~e~~~G~~~~~~~~~~-~~~~~~~~~~~Vvv~~I~f~S~CEHHllPf~ 79 (179)
T PF01227_consen 1 IEEAVRELLEALGEDPDREGLRDTPRRVAKAYAELFSGYREDPEATLF-KNFFPDGYDEMVVVRDIPFYSMCEHHLLPFF 79 (179)
T ss_dssp HHHHHHHHHHHTTB-TTSTTTTTHHHHHHHHHHHHTGGGCGGHHHHEE-ECCCEECCSSEEEEEEEEEEEEETTTSEEEE
T ss_pred ChHHHHHHHHHhCCCCCCchhhhCHHHHHHHHHHHcCCCCCChHHhhh-ccccccCCCCeEEECCcceeeecccccccee
Confidence 6899999999999999999999999999999999999999999 4555 4678888999999999999999999999999
Q ss_pred eeEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceeccccccCCceEEEee
Q psy417 139 GKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTST 218 (240)
Q Consensus 139 G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~RGv~~~~s~t~Ts~ 218 (240)
|++||||+|+|+|+|||||+||||+||||||+|||||+|||++|++.|+|+||+|+++|+|+||.||||++++|.|+|++
T Consensus 80 G~~~VaYiP~~~viGLSKl~RiV~~~arRlQlQERLT~qIa~~l~~~l~p~gV~V~i~A~H~Cm~~RGv~~~~s~t~T~a 159 (179)
T PF01227_consen 80 GTAHVAYIPGGRVIGLSKLARIVDFFARRLQLQERLTRQIADALEEILGPKGVAVVIEAEHMCMTMRGVRKPGSRTVTSA 159 (179)
T ss_dssp EEEEEEEE-SSEEE-HHHHHHHHHHHHSSEE-HHHHHHHHHHHHHHHHTSSEEEEEEEEEEHHHHSSTTT-SS-EEEEEE
T ss_pred eeEEEEEEeCCcccChhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCCeEEEEEEeccCCccccCccCCCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeecCChHHHHHHHHhhh
Q psy417 219 MLGQFRDDPKTREEFLNLVN 238 (240)
Q Consensus 219 ~~G~F~~d~~~R~EFl~ll~ 238 (240)
++|.|++|+++|+||+++|+
T Consensus 160 ~~G~f~~d~~~r~ef~~li~ 179 (179)
T PF01227_consen 160 FRGAFAEDPSLRQEFLSLIR 179 (179)
T ss_dssp EEEHHHHSHHHHHHHHHHCC
T ss_pred EEeEeCCCHHHHHHHHHhhC
Confidence 99999999999999999874
No 8
>PTZ00484 GTP cyclohydrolase I; Provisional
Probab=100.00 E-value=4.4e-78 Score=542.37 Aligned_cols=186 Identities=57% Similarity=0.951 Sum_probs=179.3
Q ss_pred cccchhHHHHHHHHHHHHh-CCCCCCCCCCCcHHHHHHHHHHHhcCcCchhHhhhcccccc---CCCCccEEEeeeeeee
Q psy417 53 REALLPDMTASYKRLLGAL-GENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFD---EDHDEMVVVKDIEMFS 128 (240)
Q Consensus 53 ~~~~~~~i~~av~~lL~aL-GeD~~regL~~TP~RVAk~~~e~~~Gy~~~~~~~~~~~~f~---~~~~~lVvv~~I~f~S 128 (240)
.+++..+++++|+.||++| |+||+|+||++||+||||||.++|+||..+|.+.++..+|+ +.+++||+|+||+|+|
T Consensus 69 ~~~~~~~ie~avr~iL~al~GeDp~RegL~~TP~RVak~~~e~~~Gy~~~~~~~l~~~~~~~~~~~~~~mVvv~dI~f~S 148 (259)
T PTZ00484 69 MEEKKGAIESARRKILKSLEGEDPDRDGLKKTPKRVAKALEFLTKGYHMSVEEVIKKALFKVEPKNNDEMVKVRDIDIFS 148 (259)
T ss_pred chhhHHHHHHHHHHHHHHhcCCCCCCcchhhhHHHHHHHHHHHHhcccCCHHHHhcccccccccCCCCcEEEEeccceEE
Confidence 4556778999999999999 99999999999999999999999999999999999877787 4678999999999999
Q ss_pred ecCcccccceeeEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceeccccc
Q psy417 129 MCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQ 208 (240)
Q Consensus 129 ~CEHHLlPf~G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~RGv~ 208 (240)
+||||||||+|++||||+|+++|+|||||+|||++||||||+|||||+|||++|++.|+|+||||+++|+||||.||||+
T Consensus 149 ~CEHHLLPf~G~~hIaYiP~~~ViGLSKl~RiV~~~arRlQiQERLT~qIAdaL~~~L~p~GVaV~ieA~H~Cm~mRGv~ 228 (259)
T PTZ00484 149 LCEHHLLPFEGECTIGYIPNKKVLGLSKFARIIEIFSRRLQVQERLTQQIANALQKYLKPMGVAVVIVASHMCMNMRGVQ 228 (259)
T ss_pred ecccccCceEEEEEEEEecCCeEecHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhCCCceEEEEEEEEeeEhhcCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEeeEeeeecCChHHHHHHHHhhh
Q psy417 209 KINSKTVTSTMLGQFRDDPKTREEFLNLVN 238 (240)
Q Consensus 209 ~~~s~t~Ts~~~G~F~~d~~~R~EFl~ll~ 238 (240)
+.++.|+|++++|+|.+|+.+|+||+++++
T Consensus 229 ~~~s~t~Tsa~~G~F~~d~~~r~Ef~~li~ 258 (259)
T PTZ00484 229 KHDASTTTSAYLGVFRSDPKLRAEFFSLIK 258 (259)
T ss_pred cCCCeEEEEEeEeEeCCCHHHHHHHHHHhc
Confidence 999999999999999999999999999985
No 9
>KOG2698|consensus
Probab=100.00 E-value=3.3e-78 Score=526.41 Aligned_cols=197 Identities=77% Similarity=1.203 Sum_probs=191.5
Q ss_pred CCCCCCCCCcccchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHhcCcCchhHhhhccccccCCCCccEEEee
Q psy417 44 LELDHQPPTREALLPDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDEDHDEMVVVKD 123 (240)
Q Consensus 44 ~~~~~~~~~~~~~~~~i~~av~~lL~aLGeD~~regL~~TP~RVAk~~~e~~~Gy~~~~~~~~~~~~f~~~~~~lVvv~~ 123 (240)
.+.+..+++.++++++|..|++.||..|||||+|.||.+||.|.|||++.|++||+++..+.+|.++|+++++|||||+|
T Consensus 51 ~~~~~~~~~~e~~lp~m~~a~~siL~~LGEdp~RqgLl~TP~R~aKaMl~Ftkgy~~~l~dvlN~AvfdedhdEmvivkd 130 (247)
T KOG2698|consen 51 PEVDSSEEESEEVLPEMANAYSSILKSLGEDPNRQGLLKTPERAAKAMLYFTKGYEQNLNDVLNEAVFDEDHDEMVIVKD 130 (247)
T ss_pred cccccCCccchhHhHHHHHHHHHHHHHhcCCcchhhhhcCHHHHHHHHHHHHhhHHHHHHHHhhhhccccccceeEEEec
Confidence 45556677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecCcccccceeeEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEecee
Q psy417 124 IEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMV 203 (240)
Q Consensus 124 I~f~S~CEHHLlPf~G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~ 203 (240)
|..||||||||+||||++||||+|+++|+|||||+|||++|+||||+|||||+|||.+|.+.++|.|||||+||.||||.
T Consensus 131 iemfSmCEHHLvPF~GkVhIGY~pnkkvlGlSklarIve~ysrrLQVQERlTkQIA~a~s~~v~p~gVaVV~Ea~HmCMV 210 (247)
T KOG2698|consen 131 IEMFSMCEHHLVPFYGKVHIGYIPNKKVLGLSKLARIVEMYSRRLQVQERLTKQIAVALSQAVQPAGVAVVVEATHMCMV 210 (247)
T ss_pred chHHHHhhhccccceeeEEEeeccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceEEEEecceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCceEEEeeEeeeecCChHHHHHHHHhhhcC
Q psy417 204 MRGVQKINSKTVTSTMLGQFRDDPKTREEFLNLVNTK 240 (240)
Q Consensus 204 ~RGv~~~~s~t~Ts~~~G~F~~d~~~R~EFl~ll~~~ 240 (240)
||||++.||+|+||+|.|+|.+|+.+|+|||.+|+++
T Consensus 211 mRGvqK~~SsTvTs~mlGvFr~d~ktReeFl~li~~~ 247 (247)
T KOG2698|consen 211 MRGVQKIGSSTVTSTMLGVFRDDPKTREEFLNLINSR 247 (247)
T ss_pred eecccccCcchhhhhhhhhhccCchhHHHHHHHhccC
Confidence 9999999999999999999999999999999999864
No 10
>PLN02531 GTP cyclohydrolase I
Probab=100.00 E-value=7.2e-72 Score=535.04 Aligned_cols=206 Identities=37% Similarity=0.610 Sum_probs=184.8
Q ss_pred cccccccCCCCCCCCCCCC--cccchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHhcCcCchhHhhhccccc
Q psy417 34 SHEKCTFHNDLELDHQPPT--REALLPDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVF 111 (240)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~av~~lL~aLGeD~~regL~~TP~RVAk~~~e~~~Gy~~~~~~~~~~~~f 111 (240)
+|+++.++++.+.+--+.. +....++|+.+|++||++|||||+|+||++||+||||||.++|+||..+|.++++..+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~av~~iL~alGeD~~regL~~TP~RVaka~~e~~~Gy~~~~~~~~~~~~f 86 (469)
T PLN02531 7 GHFNLELDNGVKLDCLELGFEDQPETLAIESAVKVLLQGLGEDVNREGLKKTPLRVAKALREATRGYKQSAKDIVGGALF 86 (469)
T ss_pred hhhhhhcccccccchhhhhcccCCCHHHHHHHHHHHHHHhCCCCCCcchhhhHHHHHHHHHHHhcccCCChHHHhhhhcc
Confidence 5667777776665532222 22234579999999999999999999999999999999999999999999999987788
Q ss_pred cC-C----------CCccEEEeeeeeeeecCcccccceeeEEEEEeC-CCccccchhHHHHHHHHhcchhhHHHHHHHHH
Q psy417 112 DE-D----------HDEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLP-CKKILGLSKLARIVEIYSRRLQVQERLTKQIA 179 (240)
Q Consensus 112 ~~-~----------~~~lVvv~~I~f~S~CEHHLlPf~G~~hIaYiP-~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa 179 (240)
++ . +++||+|+||+|||+||||||||+|+||||||| +|+|+|||||+||||+||||||+|||||+|||
T Consensus 87 ~~~~~~~~~~~~~~~~emVvv~dI~f~S~CEHHlLPf~G~ahVaYiP~~~~ViGLSKl~RiV~~~ArRlQvQERLT~qIA 166 (469)
T PLN02531 87 PEAGLDDGVGHGGGCGGLVVVRDLDLFSYCESCLLPFQVKCHIGYVPSGQRVVGLSKLSRVAEVFAKRLQDPQRLADEIC 166 (469)
T ss_pred ccccccccccccCCCCceEEEeCeeEEEeccccccceeeEEEEEEEcCCCeEechHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 64 2 368999999999999999999999999999999 68999999999999999999999999999999
Q ss_pred HHHHhhcCCCceEEEEeeEEece--eccccccCCc---eEEEeeE--eeeecCCh-HHHHHHHHhhhc
Q psy417 180 IAVTKAVQPAGVAVVVEGVHMCM--VMRGVQKINS---KTVTSTM--LGQFRDDP-KTREEFLNLVNT 239 (240)
Q Consensus 180 ~aL~~~l~p~GVaVvveA~H~Cm--~~RGv~~~~s---~t~Ts~~--~G~F~~d~-~~R~EFl~ll~~ 239 (240)
++|++.|+|+||||+|+|+|||| .||||++++| .|+|+++ +|+|++|+ ++|+||+++++.
T Consensus 167 ~aL~~~l~p~GVaVvieA~H~Cm~~~~RGv~~~~s~~g~t~Ts~~~~~G~F~~d~~~~r~Efl~li~~ 234 (469)
T PLN02531 167 SALHHGIKPAGVAVVLECSHIHFPNESLGSLDLSSHQGWVKASVCSGSGVFEDESGNLWEEFVSLLQF 234 (469)
T ss_pred HHHHHhhCCCcEEEEEEEEEeeecccccccccCCCCcceEEEEeecccceecCCcHHHHHHHHHHhhc
Confidence 99999999999999999999999 7999999999 9999855 49999988 899999999865
No 11
>PLN02531 GTP cyclohydrolase I
Probab=100.00 E-value=8.9e-71 Score=527.49 Aligned_cols=185 Identities=41% Similarity=0.623 Sum_probs=172.3
Q ss_pred ccchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHhcC--cCchhHhhhcccccc--------CCCCccEEEee
Q psy417 54 EALLPDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKG--YDQTLEEVLNDAVFD--------EDHDEMVVVKD 123 (240)
Q Consensus 54 ~~~~~~i~~av~~lL~aLGeD~~regL~~TP~RVAk~~~e~~~G--y~~~~~~~~~~~~f~--------~~~~~lVvv~~ 123 (240)
.+..++++++|+.||++||+||+|+||++||+||||||.++|+| |..++.+.++..++. ..+++||+|+|
T Consensus 263 ~~~~~~~e~av~~iL~alGeDp~RegL~~TP~RVak~~~e~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mViv~d 342 (469)
T PLN02531 263 PEPNPAMVSAVESILRSLGEDPLRKELVLTPSRFVRWLLNSTQGSRMGRNLEMKLNGFACEKMDPLHANLNEKTMHTELN 342 (469)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHHHHHHhcCcccCCCHHHHhhhhcccccccccccCCCCceEEEeC
Confidence 44567899999999999999999999999999999999999999 566777777643333 25689999999
Q ss_pred eeeeeecCcccccceeeEEEEEeCC-C-----ccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEee
Q psy417 124 IEMFSMCEHHLVPFYGKVSIGYLPC-K-----KILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEG 197 (240)
Q Consensus 124 I~f~S~CEHHLlPf~G~~hIaYiP~-~-----~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA 197 (240)
|+|+|+||||||||+|++||||+|+ + +|+|||||+|||++||||||+|||||+|||++|++ |+|+||+|+++|
T Consensus 343 I~f~S~CEHHLLPF~G~ahVaYiP~~~~~~~~~ViGLSKl~RiV~~~arRlQvQERLT~qIA~al~~-l~p~GVaVvieA 421 (469)
T PLN02531 343 LPFWSQCEHHLLPFYGVVHVGYFCAEGGRGNRNPISRSLLQSIVHFYGFRLQVQERLTRQIAETVSS-LLGGDVMVVVEA 421 (469)
T ss_pred ceEEEeccccccceEEEEEEEEecCCCCCcCceeechHHHHHHHHHHhccchHHHHHHHHHHHHHHH-hCCCceEEEEEe
Confidence 9999999999999999999999995 6 79999999999999999999999999999999999 999999999999
Q ss_pred EEeceeccccccCCceEEEeeEeeeecCChHHHHHHHHhhhc
Q psy417 198 VHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLNLVNT 239 (240)
Q Consensus 198 ~H~Cm~~RGv~~~~s~t~Ts~~~G~F~~d~~~R~EFl~ll~~ 239 (240)
+||||.||||++.+|.|+|++++|.|.+|+.+|+|||+++..
T Consensus 422 ~H~CM~mRGV~k~~s~t~Tsa~~G~F~~d~~~R~eFl~li~~ 463 (469)
T PLN02531 422 SHTCMISRGVEKFGSSTATIAVLGRFSSDAKARAMFLQSIAT 463 (469)
T ss_pred EEehhhhhCccCCCCeEEEEEeeeEeCCCHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999864
No 12
>PRK13258 7-cyano-7-deazaguanine reductase; Provisional
Probab=99.91 E-value=1.7e-24 Score=174.49 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=80.0
Q ss_pred CCCccEEEeeeeeeeecCcccccceeeEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEE
Q psy417 114 DHDEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAV 193 (240)
Q Consensus 114 ~~~~lVvv~~I~f~S~CEHHLlPf~G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaV 193 (240)
+.+.+|++++|+|+|+||||++|++|+++|+|+|++++||+++|.++++.|++|+|.||++|.||++.|++.++|+-+-|
T Consensus 13 ~~~~~V~~~~~ef~S~Cp~tg~Pd~g~~~I~Y~P~~~iielkSLk~Yl~Sf~~~~~~qE~lt~~I~~dL~~~l~p~~l~v 92 (114)
T PRK13258 13 GRDYTIRITLPEFTSLCPKTGQPDFATIVIDYIPDKKCVELKSLKLYLFSFRNHGIFHEDCTNRILDDLVALLDPRWLRV 92 (114)
T ss_pred CCceEEEEECCCEEEcCCCCCCCeEEEEEEEEeCCCCEEcHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred EEe
Q psy417 194 VVE 196 (240)
Q Consensus 194 vve 196 (240)
+..
T Consensus 93 ~~~ 95 (114)
T PRK13258 93 GGD 95 (114)
T ss_pred EEE
Confidence 765
No 13
>TIGR03139 QueF-II 7-cyano-7-deazaguanine reductase. The enzymatic step represents the first point at which the biosynthesis of queuosine in bacteria and eukaryotes is distinguished from the biosynthesis of archaeosine in archaea.
Probab=97.14 E-value=0.0048 Score=50.39 Aligned_cols=87 Identities=21% Similarity=0.290 Sum_probs=76.4
Q ss_pred cccCCC---CccEEEeeeeeeeecCcccccceeeEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhc
Q psy417 110 VFDEDH---DEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAV 186 (240)
Q Consensus 110 ~f~~~~---~~lVvv~~I~f~S~CEHHLlPf~G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l 186 (240)
+|++.+ +-.|-+.-=.|.|.|.=.=.|-+|.+.|-|+|+.+++=+=.|-..+.-|-.+---||.++.+|++-|.+.+
T Consensus 8 ~f~n~~p~~~y~i~~~~pEfts~CP~tGqPD~a~i~i~YiP~~~~vEsKSLKlYLnSfrn~~~~hE~~~~~I~~DL~~~~ 87 (115)
T TIGR03139 8 AFPNPYPDRDYTIEFVCPEFTSLCPKTGQPDFATIVISYIPDQRCVELKSLKLYLFSFRNHGIFHENVTNTILDDLVKLL 87 (115)
T ss_pred EeCCCCCCCceEEEEeCCceecCCCCCCCCeEEEEEEEEeCCccchhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence 455543 33555666679999999999999999999999999999999999999999988999999999999999999
Q ss_pred CCCceEEEEe
Q psy417 187 QPAGVAVVVE 196 (240)
Q Consensus 187 ~p~GVaVvve 196 (240)
+|+-+-|+..
T Consensus 88 ~P~~l~V~~~ 97 (115)
T TIGR03139 88 QPRYLRVIGD 97 (115)
T ss_pred CCCEEEEEEE
Confidence 9999888865
No 14
>COG0780 Enzyme related to GTP cyclohydrolase I [General function prediction only]
Probab=96.28 E-value=0.025 Score=48.09 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=70.5
Q ss_pred eeeeeeecCcccccceeeEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeE
Q psy417 123 DIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGV 198 (240)
Q Consensus 123 ~I~f~S~CEHHLlPf~G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~ 198 (240)
-=.|.|.|.=-=-|=+|+++|-|+|++.++-+-.|.+.+.-|--+=--+|..+.+|++-|.+.++|+-+.|...-.
T Consensus 46 ~~ef~S~CpiTgqPD~~ti~I~Y~p~~~~ve~ksLk~yl~SFR~h~~fHE~c~~~I~~dl~~~l~P~~l~V~~~~~ 121 (149)
T COG0780 46 SPEFKSLCPITGQPDFATIYIEYIPDKACVESKSLKLYLFSFRNHGIFHEQCANRIFNDLKALLKPEYLEVYGKFT 121 (149)
T ss_pred cccceecCCCcCCCCeEEEEEEEcCchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCEEEEEEEEe
Confidence 3348999988888999999999999999999999999999999999999999999999999999999999998743
No 15
>PF14489 QueF: QueF-like protein; PDB: 3UXV_C 3RJB_A 3BP1_D 3RZP_B 3RJ4_A 3UXJ_C 3S19_D 3RZQ_B.
Probab=96.19 E-value=0.0094 Score=45.77 Aligned_cols=61 Identities=21% Similarity=0.311 Sum_probs=51.6
Q ss_pred cceeeEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEe
Q psy417 136 PFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVE 196 (240)
Q Consensus 136 Pf~G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvve 196 (240)
|=+|+++|-|+|+++.+=|-.|-..+.-|--.---+|.+|.+|.+-|.+.++|+-+-|...
T Consensus 1 PDfati~I~Y~p~~~~vElkSLk~Yl~SfRn~~~fhE~~v~~I~~Dl~~~~~P~~l~V~~~ 61 (80)
T PF14489_consen 1 PDFATIYIRYIPDKKCVELKSLKLYLWSFRNHGIFHEQCVNRIFDDLVAALKPRYLRVTAD 61 (80)
T ss_dssp EEEEEEEEEEEEEE--E-HHHHHHHHHTTTTSBE-HHHHHHHHHHHHHHHH--SEEEEEEE
T ss_pred CCeEEEEEEEECCCcccCHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 5589999999999999999999999999999999999999999999999999999888765
No 16
>cd00651 TFold Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl tetrahydropterin synthetase (PTPS), and uricase (UO,uroate/urate oxidase). They bind to substrates belonging to the purine or pterin families, and share a fold-related binding site with a glutamate or glutamine residue anchoring the substrate and a lot of conserved interactions. They also share a similar oligomerization mode: several T-folds join together to form a beta(2n)alpha(n) barrel, then two barrels join together in a head-to-head fashion to made up the native enzymes. The functional enzyme is a tetramer for UO, a hexamer for PTPS, an octamer for DHNA/DHNTPE and a decamer for GTPCH-1. The substrate is located in a deep and narrow pocket at the interface between monomers. In PTPS, the active site is located at the interface of thr
Probab=96.15 E-value=0.087 Score=40.89 Aligned_cols=100 Identities=22% Similarity=0.132 Sum_probs=72.5
Q ss_pred cEEEeeeeeeeecC----cccccceeeEEEEEeCCC----------ccccchhHHHHHHHHhcchhhHHHHHHHHHHHHH
Q psy417 118 MVVVKDIEMFSMCE----HHLVPFYGKVSIGYLPCK----------KILGLSKLARIVEIYSRRLQVQERLTKQIAIAVT 183 (240)
Q Consensus 118 lVvv~~I~f~S~CE----HHLlPf~G~~hIaYiP~~----------~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~ 183 (240)
.+.++|+.+++.+. +...|-.-.+.|-.-.++ .-+.-+.+.+.+.-++.+.+++|.++.+||+.|.
T Consensus 3 ~i~i~~l~~~~~~G~~~~e~~~~q~~~v~v~~~~~~~~~~~~d~l~~~i~y~~v~~~i~~~~~~~~l~E~lae~i~~~i~ 82 (122)
T cd00651 3 GVRVKDLLKVTRLGFVTLERTVGQIFEVDVTLSWDGKKAAASDDVATDTVYNTIYRLAKEYVEGSQLIERLAEEIAYLIA 82 (122)
T ss_pred EEEEEeeEEEEEECCCHHHHhcCCEEEEEEEEEecCchhhccCchhhhCCHHHHHHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 34788999999887 345555555555332222 1366788888887777666999999999999999
Q ss_pred hhcC--CCceEEEEeeEEeceeccccccCCceEEEe
Q psy417 184 KAVQ--PAGVAVVVEGVHMCMVMRGVQKINSKTVTS 217 (240)
Q Consensus 184 ~~l~--p~GVaVvveA~H~Cm~~RGv~~~~s~t~Ts 217 (240)
+... ...|-|.++..+.|+..||+..........
T Consensus 83 ~~~~~~~~~v~v~v~k~~~~~~~~~~~~~~~~~~~~ 118 (122)
T cd00651 83 EHFLSSVAEVKVEEKKPHAVIPDRGVFKPTDSPGVT 118 (122)
T ss_pred HhcccCceEEEEEEeCCCCCCCcccccccCCcEEEE
Confidence 8876 788888889999999988776654443333
No 17
>PRK11792 queF 7-cyano-7-deazaguanine reductase; Provisional
Probab=88.52 E-value=2.4 Score=39.49 Aligned_cols=78 Identities=23% Similarity=0.299 Sum_probs=67.9
Q ss_pred eeeecCcccccceeeEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceecc
Q psy417 126 MFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMR 205 (240)
Q Consensus 126 f~S~CEHHLlPf~G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~R 205 (240)
|.|.|.=-=.|=+|+++|-|+|++ |-+-.|-+.+--|-..---.|..+.+|.+-|++.++|+-+.|... -.-|
T Consensus 176 l~s~CpvTgqPD~~ti~I~Y~~~~--ie~ksL~~Yl~sfR~h~~FHE~cv~rI~~Dl~~~~~P~~l~V~a~-----yt~R 248 (273)
T PRK11792 176 LKSNCLVTGQPDWGSVQIRYRGPK--IDREGLLRYLVSFRQHNEFHEQCVERIFTDIMRFCQPEKLTVYAR-----YTRR 248 (273)
T ss_pred cccCCCCcCCCCeEEEEEEEeCCc--cCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCcEEEEEEE-----EECC
Confidence 678888888899999999999988 788899999999999999999999999999999999999998865 3456
Q ss_pred ccccC
Q psy417 206 GVQKI 210 (240)
Q Consensus 206 Gv~~~ 210 (240)
|-=+.
T Consensus 249 GGi~i 253 (273)
T PRK11792 249 GGLDI 253 (273)
T ss_pred CCeec
Confidence 54343
No 18
>TIGR03138 QueF 7-cyano-7-deazaguanine reductase. The enzymatic step represents the first point at which the biosynthesis of queuosine in bacteria and eukaryotes is distinguished from the biosynthesis of archaeosine in archaea.
Probab=77.26 E-value=13 Score=34.72 Aligned_cols=77 Identities=22% Similarity=0.296 Sum_probs=63.3
Q ss_pred eeeecCcccccceeeEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceecc
Q psy417 126 MFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMR 205 (240)
Q Consensus 126 f~S~CEHHLlPf~G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~R 205 (240)
+.|.|.=-=.|=+|++.|-|+|+. +-+-.|-+.+--|-..---.|..+.+|.+-|++.++|+-+.|... -.-|
T Consensus 178 L~S~CPvTGQPD~gti~I~Y~g~~--~~~esLk~Yl~SFR~h~~FHE~cverI~~Dl~~~~~P~~L~V~a~-----yt~R 250 (275)
T TIGR03138 178 LKSNCPVTGQPDWGSVQIRYRGKK--IDREALLRYLISFRQHNEFHEQCVERIFADIMRFCQPEKLTVYAR-----YTRR 250 (275)
T ss_pred cccCCCCCCCCCeEEEEEEEeCCc--ccHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhcCCcEEEEEEE-----EECC
Confidence 567777777888999999999875 335568888888999999999999999999999999999988765 3456
Q ss_pred cccc
Q psy417 206 GVQK 209 (240)
Q Consensus 206 Gv~~ 209 (240)
|-=+
T Consensus 251 GGid 254 (275)
T TIGR03138 251 GGLD 254 (275)
T ss_pred CCee
Confidence 5433
No 19
>PF08879 WRC: WRC; InterPro: IPR014977 WRC is named after the conserved Trp-Arg-Cys motif, it contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H). It is suggested that WRC functions in DNA binding []. ; GO: 0005515 protein binding
Probab=56.83 E-value=1.9 Score=29.97 Aligned_cols=10 Identities=60% Similarity=1.158 Sum_probs=8.3
Q ss_pred eeeecCcccc
Q psy417 126 MFSMCEHHLV 135 (240)
Q Consensus 126 f~S~CEHHLl 135 (240)
=+|+||||+.
T Consensus 24 g~~~Ce~H~~ 33 (46)
T PF08879_consen 24 GYSLCEHHLD 33 (46)
T ss_pred CccHHHHHHH
Confidence 3699999985
No 20
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=49.82 E-value=1.1e+02 Score=31.58 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=74.4
Q ss_pred cccchhHHHHHHHHHHHHhCCCCCCCCCCCcH---HHHHHHHHHHh-cCcCchhHhhhccccccCCCCccEEEeeee---
Q psy417 53 REALLPDMTASYKRLLGALGENPDRQGLLKTP---ERAAKAMLFFT-KGYDQTLEEVLNDAVFDEDHDEMVVVKDIE--- 125 (240)
Q Consensus 53 ~~~~~~~i~~av~~lL~aLGeD~~regL~~TP---~RVAk~~~e~~-~Gy~~~~~~~~~~~~f~~~~~~lVvv~~I~--- 125 (240)
..+..+...+.+++.+++||++++...-...| +.|.++|..+. .||-..-.. ...|....+..+.-+.|.
T Consensus 66 p~e~~~~~~~~~~~~~~~l~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~---~~~y~~~~~~~l~~~~v~g~c 142 (673)
T PRK00133 66 PEELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTI---EQLYDPEKGMFLPDRFVKGTC 142 (673)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeee---EEEEeCCCCCCccchheeccc
Confidence 34566789999999999999998874333223 34444444433 455432111 011221111111111111
Q ss_pred --------eeee---cCcccccc---------eeeEEEEEeCCC-ccccchhH-HHHHHHHhcchhhHHHHHHHHHHHHH
Q psy417 126 --------MFSM---CEHHLVPF---------YGKVSIGYLPCK-KILGLSKL-ARIVEIYSRRLQVQERLTKQIAIAVT 183 (240)
Q Consensus 126 --------f~S~---CEHHLlPf---------~G~~hIaYiP~~-~ViGLSKl-~Rlvd~~ArRlQiQERLT~qIa~aL~ 183 (240)
.-.. |-+|+-|. .|. -+-+++.. .-+=||++ .+|.+++.+-+.+++++.+++.+.|.
T Consensus 143 p~C~~~d~~g~~ce~cg~~~~~~~l~~~~~~~~g~-~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 221 (673)
T PRK00133 143 PKCGAEDQYGDNCEVCGATYSPTELINPKSAISGA-TPVLKESEHFFFKLPRFEEFLKEWITRSGELQPNVANKMKEWLE 221 (673)
T ss_pred CCCCCcccCCchhhhccccCChHhhcCCccccCCC-cceEEecceEEEEHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 1122 33333322 122 23344433 45788998 67888987778899999999999998
Q ss_pred hhcCCC
Q psy417 184 KAVQPA 189 (240)
Q Consensus 184 ~~l~p~ 189 (240)
+.|+..
T Consensus 222 ~~l~d~ 227 (673)
T PRK00133 222 EGLQDW 227 (673)
T ss_pred CCCccc
Confidence 766543
No 21
>KOG3203|consensus
Probab=49.77 E-value=15 Score=31.76 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=40.1
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHhhcCC--------CceEEEEeeEEeceecc
Q psy417 157 LARIVEIYSRRLQVQERLTKQIAIAVTKAVQP--------AGVAVVVEGVHMCMVMR 205 (240)
Q Consensus 157 l~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p--------~GVaVvveA~H~Cm~~R 205 (240)
++|+-.++-.+-|.-+||+.|||..|+-.=+| .+..||+.|+|.-|.-+
T Consensus 19 faRvW~vvDa~~q~lGrLAs~ia~~L~GkhKPiYhP~~DcGD~VVV~N~~~Ia~sG~ 75 (165)
T KOG3203|consen 19 FARVWHVVDAKQQPLGRLASQIATTLQGKHKPIYHPSTDCGDHVVVTNCKKIAFSGK 75 (165)
T ss_pred HhhhheeeccccCchHHHHHHHHHHHhhccCCccCCccCCCCEEEEecchhheeccc
Confidence 45777777778899999999999999976555 36778889999988865
No 22
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=39.92 E-value=71 Score=25.25 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=36.4
Q ss_pred ccchhHHHHHHHHh--cchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEece
Q psy417 152 LGLSKLARIVEIYS--RRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCM 202 (240)
Q Consensus 152 iGLSKl~Rlvd~~A--rRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm 202 (240)
+--+.+...+.-++ .+.++.|.|+..||+.|.+......|-|.++--|...
T Consensus 51 idY~~v~~~I~~~~~~~~~~LlE~la~~ia~~i~~~~~~~~v~v~v~Kp~a~~ 103 (119)
T PRK11593 51 LSYADIAETVISHVEGARFALVERVAEEVAELLLARFNSPWVRIKLSKPGAVA 103 (119)
T ss_pred cCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhCCCcEEEEEEECCCCCC
Confidence 44556666664444 4788999999999999988766566666666555554
No 23
>PLN02224 methionine-tRNA ligase
Probab=37.89 E-value=1.4e+02 Score=30.82 Aligned_cols=117 Identities=12% Similarity=-0.004 Sum_probs=64.9
Q ss_pred cccchhHHHHHHHHHHHHhCCCCCCCCCCCcHH---HHHHHHHHHh-cCcCchhHhhhccccccCCCCccEEEeeeeeee
Q psy417 53 REALLPDMTASYKRLLGALGENPDRQGLLKTPE---RAAKAMLFFT-KGYDQTLEEVLNDAVFDEDHDEMVVVKDIEMFS 128 (240)
Q Consensus 53 ~~~~~~~i~~av~~lL~aLGeD~~regL~~TP~---RVAk~~~e~~-~Gy~~~~~~~~~~~~f~~~~~~lVvv~~I~f~S 128 (240)
..+..+++...++++++.||+++++..-.-.|. .|.+.|..+. .||-... .....+.-
T Consensus 133 p~e~~~~~~~~~~~~~~~l~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~------------------~~~~~yc~ 194 (616)
T PLN02224 133 PPEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRA------------------DYEGLYCV 194 (616)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEe------------------eeeeeecC
Confidence 345666788899999999999998754333342 2223333222 2332110 01111112
Q ss_pred ecCcccccce----------eeEEEEEeCCC-ccccchhH-HHHHHHHhcchh-h-HHHHHHHHHHHHHhhcCC
Q psy417 129 MCEHHLVPFY----------GKVSIGYLPCK-KILGLSKL-ARIVEIYSRRLQ-V-QERLTKQIAIAVTKAVQP 188 (240)
Q Consensus 129 ~CEHHLlPf~----------G~~hIaYiP~~-~ViGLSKl-~Rlvd~~ArRlQ-i-QERLT~qIa~aL~~~l~p 188 (240)
-||.++-|.. |. -+-+.... .-.-||++ .+|.+|+...|+ + ++...+++...|.+.|++
T Consensus 195 ~ce~f~~~~~l~~~~~~~~~~~-~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d 267 (616)
T PLN02224 195 NCEEYKDEKELLENNCCPVHQM-PCVARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRD 267 (616)
T ss_pred CCCCCCCHHHHcCCCCCCCCCC-cceEEecceEEEEhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCC
Confidence 2333322211 11 12244433 46889999 788999988775 2 565667777888776665
No 24
>TIGR00254 GGDEF diguanylate cyclase (GGDEF) domain. The GGDEF domain is named for the motif GG[DE]EF shared by many proteins carrying the domain. There is evidence that the domain has diguanylate cyclase activity. Several proteins carrying this domain also carry domains with functions relating to environmental sensing. These include PleD, a response regulator protein involved in the swarmer-to-stalked cell transition in Caulobacter crescentus, and FixL, a heme-containing oxygen sensor protein.
Probab=35.31 E-value=1e+02 Score=23.49 Aligned_cols=52 Identities=13% Similarity=0.311 Sum_probs=35.1
Q ss_pred cchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceeccc
Q psy417 153 GLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRG 206 (240)
Q Consensus 153 GLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~RG 206 (240)
.+-.+..+.+.|. .+.-+++..++++.|.+.+.+.+...-+....+++.+.+
T Consensus 40 ~i~~~~~i~~~~G--~~~~~~ll~~~a~~l~~~~~~~~~i~r~~~~~f~il~~~ 91 (165)
T TIGR00254 40 DIDNFKKINDTLG--HDVGDEVLREVARILQSSVRGSDVVGRYGGEEFVVILPG 91 (165)
T ss_pred eccchhHHHHhhC--hhhHHHHHHHHHHHHHHhcCcCCEEEEecCCeEEEEeCC
Confidence 3333344444333 456677888889899888888777777777777777643
No 25
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=33.85 E-value=45 Score=27.06 Aligned_cols=39 Identities=31% Similarity=0.364 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCCC----CCcHHHHHHHHHHHh
Q psy417 57 LPDMTASYKRLLGALGENPDRQGL----LKTPERAAKAMLFFT 95 (240)
Q Consensus 57 ~~~i~~av~~lL~aLGeD~~regL----~~TP~RVAk~~~e~~ 95 (240)
..+-.+.++++|+.+|+||+|=.+ ..-+.++++...+|.
T Consensus 75 a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~~~~f~ 117 (124)
T PF02662_consen 75 AEKRVERLKKLLEELGIEPERVRLYWISAPEGKRFAEIVNEFT 117 (124)
T ss_pred HHHHHHHHHHHHHHcCCChhHeEEEEeCcccHHHHHHHHHHHH
Confidence 334557789999999999999555 466788888777665
No 26
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=32.96 E-value=35 Score=30.24 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=20.8
Q ss_pred HHHhcchhhHHHHHHHHHHHHHhh
Q psy417 162 EIYSRRLQVQERLTKQIAIAVTKA 185 (240)
Q Consensus 162 d~~ArRlQiQERLT~qIa~aL~~~ 185 (240)
=|.+=+|.+||+|+.+||+.+...
T Consensus 51 mWmsDkpl~Q~~la~~la~l~~~~ 74 (217)
T PF05997_consen 51 MWMSDKPLVQEELAEELASLIHSF 74 (217)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhh
Confidence 377889999999999999888754
No 27
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=32.71 E-value=1.4e+02 Score=22.51 Aligned_cols=53 Identities=15% Similarity=0.337 Sum_probs=43.0
Q ss_pred ccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceeccc
Q psy417 152 LGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRG 206 (240)
Q Consensus 152 iGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~RG 206 (240)
+.+..+..+-+.|.. +.-+.+-++|+..|...+.+.++...+...++.+...+
T Consensus 38 i~i~~~~~l~~~~G~--~~~~~~l~~i~~~L~~~~~~~~~~~r~~~~~f~il~~~ 90 (161)
T PF00990_consen 38 IDIDNLDELNEKYGY--EVGDEILRQIAKRLKKQLRESDILARLGDDEFAILLPD 90 (161)
T ss_dssp EEETTHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCTTSEEEEEETTEEEEEEET
T ss_pred Eeccccccccccccc--ccccccccccccccccccccccccccccchheeecccc
Confidence 567777777776665 67889999999999999999999888888888877543
No 28
>PRK11245 folX D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=30.66 E-value=1.2e+02 Score=24.11 Aligned_cols=49 Identities=12% Similarity=0.166 Sum_probs=33.0
Q ss_pred cchhHHHHH-HHHh-cchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEec
Q psy417 153 GLSKLARIV-EIYS-RRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMC 201 (240)
Q Consensus 153 GLSKl~Rlv-d~~A-rRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~C 201 (240)
--+.+.+.+ ++.. ++.++.|.|+.+||+.+.+.-+...|-|.+.=-+.+
T Consensus 56 dY~~v~~~i~~~v~~~~~~llE~la~~Ia~~i~~~~~v~~v~v~v~Kp~a~ 106 (120)
T PRK11245 56 NYRTITKNIIQHVENNRFSLLEKLTQDVLDIAREHPWVTYAEVEIDKPHAL 106 (120)
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHccCCccEEEEEEECCCCC
Confidence 345555544 4444 588999999999999998754445566665544444
No 29
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=28.09 E-value=45 Score=30.25 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=56.5
Q ss_pred CccEEEeeeeeeeecCcccccceeeEEEEEeCCCccccchh--HHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEE
Q psy417 116 DEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSK--LARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAV 193 (240)
Q Consensus 116 ~~lVvv~~I~f~S~CEHHLlPf~G~~hIaYiP~~~ViGLSK--l~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaV 193 (240)
+.+|+.-.-.+.....+.|.|. +=|+|=.. .+|. |...++|+-..++.=++++++=-+-..+.|.++++++
T Consensus 168 ~Svvl~~~~~~~~~~~~~L~P~-----~HYvPv~~--d~sd~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~~L~~~~~~~ 240 (256)
T smart00672 168 DSVVLKVKPEYYEFFSRGLQPW-----VHYWPIKS--DLSCRELKEAVDWGNEHDKKAQEIGKRGSEFIQQNLSMEDVYD 240 (256)
T ss_pred CceEEEeCCchhHHHHhcccCc-----cceEEeeC--CCchhhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 6677777767888888889985 45888332 4677 9999999999998888888877777777788887765
Q ss_pred EE
Q psy417 194 VV 195 (240)
Q Consensus 194 vv 195 (240)
.+
T Consensus 241 Y~ 242 (256)
T smart00672 241 YM 242 (256)
T ss_pred HH
Confidence 43
No 30
>cd01949 GGDEF Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.
Probab=26.31 E-value=2.1e+02 Score=21.24 Aligned_cols=39 Identities=10% Similarity=0.296 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceeccc
Q psy417 168 LQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRG 206 (240)
Q Consensus 168 lQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~RG 206 (240)
.+..+++..++++.|.+.+.+.+..-.+...-+|+.+.+
T Consensus 51 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~f~~l~~~ 89 (158)
T cd01949 51 HAAGDEVLKEVAERLRSSLRESDLVARLGGDEFAILLPG 89 (158)
T ss_pred hHhHHHHHHHHHHHHHHhCCCCCEEEEecCCeEEEEeCC
Confidence 677889999999999999988777777777777777643
No 31
>TIGR02750 TraN_Ftype type-F conjugative transfer system mating-pair stabilization protein TraN. TraN is a large cysteine-rich outer membrane protein involved in the mating-pair stabilization (adhesin) component of the F-type conjugative plamid transfer system. TraN is believed to interact with the core type IV secretion system apparatus through the TraV protein.
Probab=25.45 E-value=45 Score=34.25 Aligned_cols=17 Identities=53% Similarity=0.421 Sum_probs=15.7
Q ss_pred chhHHHHHHHHhcchhh
Q psy417 154 LSKLARIVEIYSRRLQV 170 (240)
Q Consensus 154 LSKl~Rlvd~~ArRlQi 170 (240)
=|||+||+.--.||+|+
T Consensus 499 ~SkLarIiqeQgr~~Ql 515 (572)
T TIGR02750 499 DSKLARIVQEQGRGGQL 515 (572)
T ss_pred CCHHHHHHHHhhhhhhc
Confidence 39999999999999998
No 32
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=25.08 E-value=2.2e+02 Score=22.22 Aligned_cols=45 Identities=18% Similarity=0.143 Sum_probs=30.3
Q ss_pred ccchhHHHHHHHHh--cchhhHHHHHHHHHHHHHhhcC-CCceEEEEe
Q psy417 152 LGLSKLARIVEIYS--RRLQVQERLTKQIAIAVTKAVQ-PAGVAVVVE 196 (240)
Q Consensus 152 iGLSKl~Rlvd~~A--rRlQiQERLT~qIa~aL~~~l~-p~GVaVvve 196 (240)
+--+.+.+.+.-++ .+..+.|.|+.+||+.+..... ...|-|.++
T Consensus 50 idY~~v~~~i~~~~~~~~~~llE~la~~Ia~~i~~~~~~v~~v~v~i~ 97 (116)
T TIGR00525 50 VNYAELYSAIEEIVAEKPRDLIETVAYRIADRLFADFPQVQRVKVRVS 97 (116)
T ss_pred cCHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHCCCceEEEEEEE
Confidence 44555666664443 4889999999999999987543 444444443
No 33
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=24.34 E-value=1.5e+02 Score=28.54 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=68.1
Q ss_pred CCcccchhHHHHHHHHHHHHhCCCCCCCCCCCcH-----HHHHHHHHHHhc-CcCchhHhhhccccccCCCCccEE----
Q psy417 51 PTREALLPDMTASYKRLLGALGENPDRQGLLKTP-----ERAAKAMLFFTK-GYDQTLEEVLNDAVFDEDHDEMVV---- 120 (240)
Q Consensus 51 ~~~~~~~~~i~~av~~lL~aLGeD~~regL~~TP-----~RVAk~~~e~~~-Gy~~~~~~~~~~~~f~~~~~~lVv---- 120 (240)
.+.++..+.+...++++++++|++.++ ..+|. +-|.+.|..+.. ||-...+. . ..|....+....
T Consensus 61 ~~p~~~~~~~~~~~~~~~~~~~I~~D~--F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~-~--~~Yc~~~e~fl~e~~v 135 (391)
T PF09334_consen 61 IDPEEFCDKYSAKFKELLEALNISYDR--FIRTTDDRHKEFVQEIFKRLYDNGYIYKREY-E--GWYCPSCERFLPESFV 135 (391)
T ss_dssp S-HHHHHHHHHHHHHHHHHHTT---SE--EEETTSHHHHHHHHHHHHHHHHTTSEEEEEE-E--EEEETTTTEEE-GGGE
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCcc--eeCCCCHHHHHHHHHHHHHHHhcCceeeccc-c--eeEecCcCccccccee
Confidence 345566778999999999999999987 22332 344455555443 54332110 0 011112222222
Q ss_pred Eeeeee-------eeecCcccccce------------eeEEEEEeC-CCccccchhH-HHHHHHHhcchh-hHHHHHHHH
Q psy417 121 VKDIEM-------FSMCEHHLVPFY------------GKVSIGYLP-CKKILGLSKL-ARIVEIYSRRLQ-VQERLTKQI 178 (240)
Q Consensus 121 v~~I~f-------~S~CEHHLlPf~------------G~~hIaYiP-~~~ViGLSKl-~Rlvd~~ArRlQ-iQERLT~qI 178 (240)
.+..|. -..||+|=.|+- |..- -+-+ ..-.+=||++ .+|.+|+...+- .+.++...+
T Consensus 136 ~g~CP~C~~~~a~g~~Ce~cG~~~~~~~l~~p~~~~~g~~~-~~r~e~~~ff~L~~~~~~L~~~l~~~~~~~~~~~~~~~ 214 (391)
T PF09334_consen 136 EGTCPYCGSDKARGDQCENCGRPLEPEELINPVCKICGSPP-EVREEENYFFKLSKFRDQLREWLESNPDFPPPRVREIV 214 (391)
T ss_dssp TCEETTT--SSCTTTEETTTSSBEECCCSECEEETTTS-B--EEEEEEEEEE-GGGGHHHHHHHHHHSTTSSHHHHHHHH
T ss_pred eccccCcCccccCCCcccCCCCCcccccccCCccccccccC-ccccceEEEEehHHhHHHHHHHHhcCCCCCChhHHHHH
Confidence 122221 124666655554 2211 1112 1246789998 789999988876 778888777
Q ss_pred HHHHHhhcCCC
Q psy417 179 AIAVTKAVQPA 189 (240)
Q Consensus 179 a~aL~~~l~p~ 189 (240)
.+.|.+.|.+.
T Consensus 215 ~~~l~~~L~d~ 225 (391)
T PF09334_consen 215 RNWLKEGLPDL 225 (391)
T ss_dssp HHHHHT----E
T ss_pred HHHhhcccCce
Confidence 78888877643
No 34
>KOG2036|consensus
Probab=24.32 E-value=34 Score=36.43 Aligned_cols=37 Identities=30% Similarity=0.614 Sum_probs=29.0
Q ss_pred EeeEEeceeccccccCCceEEEeeEeeeecCChHHHHHHHHhhh
Q psy417 195 VEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLNLVN 238 (240)
Q Consensus 195 veA~H~Cm~~RGv~~~~s~t~Ts~~~G~F~~d~~~R~EFl~ll~ 238 (240)
++++|.||..|+-... .+.+.|.|. .+.|..|+++|.
T Consensus 732 lTGEHtcimLk~L~~~-----e~~wl~~f~--qdFr~Rf~~lLs 768 (1011)
T KOG2036|consen 732 LTGEHTCIMLKTLEGD-----ESGWLGAFY--QDFRRRFLKLLS 768 (1011)
T ss_pred cccceeEEEEecCCCc-----ccchHHHHH--HHHHHHHHHHhh
Confidence 6899999999977633 245778884 469999999885
No 35
>cd00392 Ribosomal_L13 Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.
Probab=23.85 E-value=1.2e+02 Score=24.59 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=30.1
Q ss_pred chhhHHHHHHHHHHHHHhhcC--------CCceEEEEeeEEeceecc
Q psy417 167 RLQVQERLTKQIAIAVTKAVQ--------PAGVAVVVEGVHMCMVMR 205 (240)
Q Consensus 167 RlQiQERLT~qIa~aL~~~l~--------p~GVaVvveA~H~Cm~~R 205 (240)
+-|+--||+.+||..|...-+ ..+-.||+.|++.+++-.
T Consensus 7 ~~~~lGRlAs~iA~~L~gKhKp~y~p~~d~Gd~VvViNa~~i~~tG~ 53 (114)
T cd00392 7 KGQVLGRLASKVAKLLLGKHKPTYTPHVDCGDYVVVVNAEKIVITGK 53 (114)
T ss_pred CCCchHHHHHHHHHHHcCCCCCCcCCCccCCCEEEEEeccEEEEeCc
Confidence 346777999999999986433 356778889999999843
No 36
>TIGR00526 folB_dom FolB domain. Two paralogous genes of E. coli, folB (dihydroneopterin aldolase) and folX (d-erythro-7,8-dihydroneopterin triphosphate epimerase) are homologous to each other and homo-octameric. In Pneumocystis carinii, a multifunctional enzyme of folate synthesis has an N-terminal region active as dihydroneopterin aldolase. This region consists of two tandem sequences each homologous to folB and forms tetramers.
Probab=22.96 E-value=2.3e+02 Score=22.18 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=34.5
Q ss_pred ccchhHHHHHHHHh--cchhhHHHHHHHHHHHHHhhc-CCCceEEEEeeEE
Q psy417 152 LGLSKLARIVEIYS--RRLQVQERLTKQIAIAVTKAV-QPAGVAVVVEGVH 199 (240)
Q Consensus 152 iGLSKl~Rlvd~~A--rRlQiQERLT~qIa~aL~~~l-~p~GVaVvveA~H 199 (240)
|--+.+.+.+.-++ .+.++.|.|+..||+.+.... ....|-|.++=-+
T Consensus 51 i~Y~~l~~~i~~~~~~~~~~llE~la~~ia~~i~~~~~~v~~v~v~v~Kp~ 101 (118)
T TIGR00526 51 LNYAEIASNITKFVEENPFKLIETLAKSVSEVVLDDYQKVTEVELEVSKPK 101 (118)
T ss_pred cCHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhCCCceEEEEEEECCc
Confidence 33455666664444 568899999999999998875 5566777776655
No 37
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=22.77 E-value=1e+02 Score=23.69 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=22.9
Q ss_pred chhHHHHHHHHHHHHhCC--CCCCCCCCCcHH
Q psy417 56 LLPDMTASYKRLLGALGE--NPDRQGLLKTPE 85 (240)
Q Consensus 56 ~~~~i~~av~~lL~aLGe--D~~regL~~TP~ 85 (240)
.+..+..++-.+|..+|+ ||+.+|+.|+.+
T Consensus 41 ~l~~~i~~v~~lL~~lGii~DPTT~GlsDS~~ 72 (78)
T TIGR01598 41 QLNAPIAAITTILAVVGIIMDPTTSGLSDSLR 72 (78)
T ss_pred HHHHHHHHHHHHHHHHheecCCCCCCCCchHH
Confidence 344566777788888887 888899998854
No 38
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=22.76 E-value=36 Score=31.97 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=18.5
Q ss_pred cccceeeEEEEEeCC-CccccchhHH
Q psy417 134 LVPFYGKVSIGYLPC-KKILGLSKLA 158 (240)
Q Consensus 134 LlPf~G~~hIaYiP~-~~ViGLSKl~ 158 (240)
.|||.|+++ |+|. +--+|||.-.
T Consensus 218 ~LPF~G~a~--y~~el~~W~Gls~~~ 241 (342)
T PF07893_consen 218 MLPFHGQAE--YVPELDLWFGLSSDG 241 (342)
T ss_pred ecCcCCccE--ECCCcCeEEEeccCC
Confidence 899999997 8885 4567888766
No 39
>PF07809 RTP801_C: RTP801 C-terminal region; InterPro: IPR012918 The members of this family are sequences similar to the C-terminal region of RTP801, the protein product of a hypoxia-inducible factor 1 (HIF-1)- responsive gene []. Two members of this family expressed by Drosophila melanogaster, Scylla (Q9NHN4 from SWISSPROT) and Charybde (Q9NHN5 from SWISSPROT), are designated as Hox targets []. RTP801 is thought to be involved in various cellular processes []. Over expression of the gene caused the apoptosis-resistant phenotype in cycling cells, and apoptosis sensitivity in growth arrested cells []. Moreover, the protein product of the mouse homologue of RTP801 (dig2 (Q9D3F7 from SWISSPROT)) is thought to be induced by diverse apoptotic signals, and also by dexamethasone treatment []. ; GO: 0009968 negative regulation of signal transduction, 0005737 cytoplasm; PDB: 3LQ9_A.
Probab=22.20 E-value=2.1e+02 Score=23.59 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=37.8
Q ss_pred chhhHHHHHHHHHHHHHhhc--CCC---ce--EEEEeeE-EeceeccccccCCceEEEeeEeeeecCChHHHHHHHHhh
Q psy417 167 RLQVQERLTKQIAIAVTKAV--QPA---GV--AVVVEGV-HMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLNLV 237 (240)
Q Consensus 167 RlQiQERLT~qIa~aL~~~l--~p~---GV--aVvveA~-H~Cm~~RGv~~~~s~t~Ts~~~G~F~~d~~~R~EFl~ll 237 (240)
++=+.|.|+.+||..+-+.- .|- |. .|.+|.. ..|...--++-..+.+.|....=+|..|...|.-+..+.
T Consensus 13 ~vLlP~~L~~~Ia~dvL~ls~~EPCGlRGc~i~v~~E~~~~~~~~l~~i~~Dp~~vpTFEL~Lvlr~d~~~W~~l~~~F 91 (116)
T PF07809_consen 13 EVLLPEDLTRRIARDVLRLSESEPCGLRGCLIDVCFEDEPDNCRRLGQIKVDPSTVPTFELTLVLRQDSSGWPSLRPLF 91 (116)
T ss_dssp -EE--HHHHHHHHHHHHHHHTTSTTGGGGEEEEEEEEET-TEEEEEEEEES-TTS---EEEEEEEE--TT-------S-
T ss_pred eEEchHHHHHHHHHHHHHhhcCCCCcceeeEEEEEEccccchheeeccEecCCCCCCcEEEEEEEeeCCCCCHhHHHHh
Confidence 45578999999999887653 344 43 4555665 677776556655567788888888988887777665543
No 40
>cd00490 Met_repressor_MetJ Met Repressor, MetJ. MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox' sequence. MetJ forms sufficiently strong interactions with the sugar-phosphate backbone to accomodate sequence variation in natural operators. However, it is very sensitive to particular base changes in the operator. MetJ exists as a homodimer.
Probab=21.89 E-value=66 Score=25.65 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHhCCCCCC
Q psy417 58 PDMTASYKRLLGALGENPDR 77 (240)
Q Consensus 58 ~~i~~av~~lL~aLGeD~~r 77 (240)
++|-+.++.+|+.+|+|++.
T Consensus 82 d~iP~~ak~~m~~~Gi~~~~ 101 (103)
T cd00490 82 DEIPEAAKELMREMGIEPET 101 (103)
T ss_pred ccccHHHHHHHHHhCCCccc
Confidence 36778999999999999864
No 41
>KOG2965|consensus
Probab=21.88 E-value=1.1e+02 Score=29.16 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=37.6
Q ss_pred HhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEecee--ccccc
Q psy417 164 YSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMV--MRGVQ 208 (240)
Q Consensus 164 ~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~--~RGv~ 208 (240)
.|++|-.=-..|+|+|+.+++.++..-..|++-+.|.|.. +-||.
T Consensus 77 ~~knp~~V~~atrqla~~v~~vve~~r~~l~lGGDHSlAIGTvsgva 123 (318)
T KOG2965|consen 77 LAKNPRSVGNATRQLANEVSQVVENGRILLVLGGDHSLAIGTVSGVA 123 (318)
T ss_pred hhcCchhHhHHHHHHHHHHHHHHhcCeEEEEecCcceEEEeeehhhH
Confidence 4566666667899999999999999999999999999986 44553
No 42
>PF01340 MetJ: Met Apo-repressor, MetJ; InterPro: IPR002084 Binding of a specific DNA fragment and S-adenosyl methionine (SAM) co-repressor molecules to the Escherichia coli methionine repressor (MetJ) leads to a significant reduction in dynamic flexibility of the ternary complex, with considerable entropy-enthalpy compensation, not necessarily involving any overall conformational change []. MetJ is a regulatory protein which when combined with S-adenosylmethionine (SAM) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis. It is also autoregulated. The crystal structure of the met repressor-operator complex shows two dimeric repressor molecules bound to adjacent sites 8 base pairs apart on an 18-base-pair DNA fragment. Sequence specificity is achieved by insertion of double-stranded antiparallel protein beta-ribbons into the major groove of B-form DNA, with direct hydrogen-bonding between amino-acid side chains and the base pairs. The repressor also recognises sequence-dependent distortion or flexibility of the operator phosphate backbone, conferring specificity even for inaccessible base pairs [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006555 methionine metabolic process; PDB: 1MJO_D 1CMB_A 1MJQ_C 1CMC_B 1MJK_A 1MJ2_A 1MJP_A 1MJM_B 1CMA_B 1MJL_A ....
Probab=21.54 E-value=50 Score=26.36 Aligned_cols=19 Identities=26% Similarity=0.667 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhCCCCCC
Q psy417 59 DMTASYKRLLGALGENPDR 77 (240)
Q Consensus 59 ~i~~av~~lL~aLGeD~~r 77 (240)
.|-.+++.+|+++|+|++.
T Consensus 83 ~ip~~~~~~m~~~gi~~~~ 101 (104)
T PF01340_consen 83 EIPAEAKRIMEEMGIDPEE 101 (104)
T ss_dssp SS-HHHHHHHHHTT--TTT
T ss_pred cchHHHHHHHHHhCCChhh
Confidence 5778899999999999975
No 43
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=21.40 E-value=1.6e+02 Score=20.00 Aligned_cols=29 Identities=14% Similarity=0.446 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHHhhcC--CCceEEEEe
Q psy417 168 LQVQERLTKQIAIAVTKAVQ--PAGVAVVVE 196 (240)
Q Consensus 168 lQiQERLT~qIa~aL~~~l~--p~GVaVvve 196 (240)
.+-..+|.+.|++++.+.++ +..+.|+++
T Consensus 14 ~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~ 44 (62)
T PRK00745 14 VEQKRKLVEEITRVTVETLGCPPESVDIIIT 44 (62)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHEEEEEE
Confidence 45667899999999999876 678888874
No 44
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=21.29 E-value=4e+02 Score=20.69 Aligned_cols=64 Identities=13% Similarity=0.102 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHhhcC-CCceEEEEeeEEec-eeccccccCCceEEEeeEeeeecCChHHHHHHHHhh
Q psy417 170 VQERLTKQIAIAVTKAVQ-PAGVAVVVEGVHMC-MVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLNLV 237 (240)
Q Consensus 170 iQERLT~qIa~aL~~~l~-p~GVaVvveA~H~C-m~~RGv~~~~s~t~Ts~~~G~F~~d~~~R~EFl~ll 237 (240)
..+.+..++.++|.+.++ |.+ .+++.-..-+ |...| ++...-.++-...|.. +.+.+++|.+.|
T Consensus 16 ~~~~~~~~~~~~l~~~lgkPe~-~~~v~~~~~~~m~f~g-~~~p~a~v~i~~~g~~--~~e~k~~l~~~i 81 (116)
T PTZ00397 16 QADAALSDIENAIADVLGKPLS-YIMSGYDYQKHMRFGG-SHDGCCFVRVTSIGGI--SRSNNSSIAAAI 81 (116)
T ss_pred cHHHHHHHHHHHHHHHhCCChH-HEEEEEeCCceEEECC-CCCceEEEEEEEecCC--CHHHHHHHHHHH
Confidence 345667777777777765 777 4444444344 33334 4445666666666654 455566665544
No 45
>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic. This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Bacterial and organellar forms are represented by TIGR01066.
Probab=21.09 E-value=94 Score=26.18 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=26.9
Q ss_pred chhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceecc
Q psy417 167 RLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMR 205 (240)
Q Consensus 167 RlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~R 205 (240)
+-|+--||+.+||..|. ..+-.||+.|+|..++-.
T Consensus 6 ~~~vlGRLAs~IA~~L~----~Gd~VvViNaeki~~TG~ 40 (142)
T TIGR01077 6 SGHILGRLASVVAKQLL----NGEKVVVVNAEKIVISGN 40 (142)
T ss_pred CCCchHHHHHHHHHHHh----cCCEEEEEechHheecCc
Confidence 34666788888888885 456677889999999854
No 46
>KOG3235|consensus
Probab=21.05 E-value=1.7e+02 Score=25.94 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=29.6
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEee
Q psy417 161 VEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEG 197 (240)
Q Consensus 161 vd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA 197 (240)
|+--=||+-+-+||-.|-..|+.+.-+++-|-.-|.+
T Consensus 79 V~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~ 115 (193)
T KOG3235|consen 79 VKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRK 115 (193)
T ss_pred ehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeec
Confidence 4455589999999999988999888888877766654
No 47
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=21.01 E-value=5.7e+02 Score=25.33 Aligned_cols=129 Identities=13% Similarity=0.112 Sum_probs=67.2
Q ss_pred cccchhHHHHHHHHHHHHhCCCCCCCCCCCcHH---HHHHHHHHH-hcCcCchhHhhhccccccCCC-----CccEEEee
Q psy417 53 REALLPDMTASYKRLLGALGENPDRQGLLKTPE---RAAKAMLFF-TKGYDQTLEEVLNDAVFDEDH-----DEMVVVKD 123 (240)
Q Consensus 53 ~~~~~~~i~~av~~lL~aLGeD~~regL~~TP~---RVAk~~~e~-~~Gy~~~~~~~~~~~~f~~~~-----~~lVvv~~ 123 (240)
..+..+...+++++.+++||++++...-.-.|. .+.+.|..+ -.||-..-.. ...|.... +..| .+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~---~~~~~~~~~~~l~~~~v-~g~ 143 (556)
T PRK12268 68 PQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTI---EQAYCPSDGRFLPDRYV-EGT 143 (556)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeee---EEEecCCCCcCcCccce-ecc
Confidence 345567889999999999999998743223343 333333333 2455432111 01121111 1111 111
Q ss_pred ee-------eeeecCcc---c---------ccceeeEEEEEeCCC-ccccchhH-HHHHHHHhcchhhHHHHHHHHHHHH
Q psy417 124 IE-------MFSMCEHH---L---------VPFYGKVSIGYLPCK-KILGLSKL-ARIVEIYSRRLQVQERLTKQIAIAV 182 (240)
Q Consensus 124 I~-------f~S~CEHH---L---------lPf~G~~hIaYiP~~-~ViGLSKl-~Rlvd~~ArRlQiQERLT~qIa~aL 182 (240)
-+ .-+.||++ + +...|. .+-|.+.. .-+=++++ .++++++.+...++++..+.+-+.|
T Consensus 144 cp~c~~~~~~G~~ce~cg~~~~~~~l~~p~~~~~~~-~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l 222 (556)
T PRK12268 144 CPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGS-TPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWL 222 (556)
T ss_pred CCCCCCcccCCchhhhccccCChHHhcCCccccCCC-cCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 11 12234432 0 111111 23456654 56778988 5678888755567888888888877
Q ss_pred Hhhc
Q psy417 183 TKAV 186 (240)
Q Consensus 183 ~~~l 186 (240)
.+.+
T Consensus 223 ~~~l 226 (556)
T PRK12268 223 KEGL 226 (556)
T ss_pred hCCC
Confidence 7434
No 48
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=20.37 E-value=2.2e+02 Score=21.85 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=34.1
Q ss_pred ccccchhHHHHHHHHh--cchhhHHHHHHHHHHHHHhhcC-CCceEEEEe
Q psy417 150 KILGLSKLARIVEIYS--RRLQVQERLTKQIAIAVTKAVQ-PAGVAVVVE 196 (240)
Q Consensus 150 ~ViGLSKl~Rlvd~~A--rRlQiQERLT~qIa~aL~~~l~-p~GVaVvve 196 (240)
..+--+.+.+.+.-++ .+..+.|.|+..|++.+.+.-. ...|-|.++
T Consensus 46 ~tvdY~~l~~~i~~~~~~~~f~llE~la~~i~~~i~~~~~~v~~v~v~v~ 95 (113)
T PF02152_consen 46 DTVDYAELAEAIRELVENSHFNLLETLAERIADRILKEFPQVQSVTVKVR 95 (113)
T ss_dssp GSSHHHHHHHHHHHHHHSSEESSHHHHHHHHHHHHHHHTTTESEEEEEEE
T ss_pred cccCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhCCCccEEEEEEE
Confidence 4567777776665554 4679999999999999998754 555555554
Done!