Query psy417
Match_columns 240
No_of_seqs 164 out of 1170
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 18:40:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wur_A GTP cyclohydrolase I; b 100.0 7.5E-83 2.6E-87 560.2 17.5 182 58-239 36-217 (220)
2 1is8_A GTP cyclohydrolase I; e 100.0 7.4E-83 2.5E-87 563.1 16.0 185 54-238 45-229 (230)
3 1a8r_A GTP cyclohydrolase I; p 100.0 1.6E-81 5.6E-86 552.6 13.7 204 35-240 14-220 (221)
4 4f8b_A NADPH-dependent 7-cyano 96.8 0.0068 2.3E-07 51.1 9.4 87 110-196 33-122 (165)
5 3uxj_A NADPH-dependent 7-cyano 83.7 1.8 6.2E-05 39.3 6.0 70 125-196 192-261 (290)
6 3icl_A EAL/ggdef domain protei 40.5 60 0.0021 24.3 5.9 54 152-207 36-89 (171)
7 3pg6_A E3 ubiquitin-protein li 37.5 16 0.00054 30.4 2.2 53 115-168 49-104 (159)
8 3r2e_A Dihydroneopterin aldola 34.9 54 0.0018 26.1 4.9 89 110-200 19-125 (143)
9 2o90_A DHNA, dihydroneopterin 34.4 66 0.0022 24.5 5.2 48 152-199 51-100 (122)
10 4aey_A D-erythro-7,8-dihydrone 32.6 63 0.0022 26.2 5.0 82 116-199 41-140 (156)
11 1nbu_A DHNA, probable dihydron 32.2 75 0.0026 24.1 5.2 44 152-196 52-98 (119)
12 3v9o_A Dihydroneopterin aldola 30.2 75 0.0026 25.1 5.0 79 116-196 22-119 (143)
13 3o1k_A Dihydroneopterin aldola 29.1 79 0.0027 24.6 4.9 81 117-199 17-115 (132)
14 3ign_A Diguanylate cyclase; gg 29.0 87 0.003 23.6 5.1 53 152-206 45-97 (177)
15 1sql_A Dihydroneopterin aldola 28.3 92 0.0031 24.8 5.3 83 116-200 21-122 (146)
16 3m20_A 4-oxalocrotonate tautom 27.3 62 0.0021 21.3 3.5 28 169-196 13-42 (62)
17 1b9l_A Protein (epimerase); is 27.2 81 0.0028 23.9 4.6 80 117-198 6-103 (120)
18 3im4_C Dual specificity A kina 26.3 40 0.0014 22.4 2.2 17 169-185 12-28 (45)
19 3kan_A D-dopachrome tautomeras 26.1 1.2E+02 0.0042 22.6 5.4 52 170-223 14-67 (117)
20 1xky_A Dihydrodipicolinate syn 26.0 33 0.0011 30.2 2.4 68 131-201 7-92 (301)
21 4dh4_A MIF; trimer, isomerase; 25.3 2E+02 0.0069 21.0 7.1 63 170-236 15-79 (114)
22 3fwt_A Macrophage migration in 25.2 2.2E+02 0.0074 21.8 6.8 61 170-237 40-101 (133)
23 3qyy_A Response regulator; C-D 23.4 1.3E+02 0.0043 22.5 5.1 53 152-206 48-100 (167)
24 3mtk_A Diguanylate cyclase/pho 22.4 1.4E+02 0.0049 22.6 5.3 53 152-206 42-94 (178)
25 1z9w_A DHNA, dihydroneopterin 21.9 1E+02 0.0034 24.0 4.3 46 153-199 53-101 (133)
26 1dhn_A DHNA, 7,8-dihydroneopte 21.4 1.1E+02 0.0036 23.3 4.2 77 118-196 4-99 (121)
27 3i5c_A Fusion of general contr 21.3 1.6E+02 0.0056 22.5 5.5 53 152-206 67-120 (206)
28 3fwu_A Macrophage migration in 21.0 1.9E+02 0.0064 22.3 5.7 61 173-237 39-101 (133)
29 3abf_A 4-oxalocrotonate tautom 20.5 1.1E+02 0.0039 19.5 3.7 28 170-197 16-45 (64)
No 1
>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine tetrahydrobiopterin, structural genomics, NPPSFA; HET: 8DG; 1.82A {Thermus thermophilus} SCOP: d.96.1.1 PDB: 1wm9_A* 1wuq_A*
Probab=100.00 E-value=7.5e-83 Score=560.22 Aligned_cols=182 Identities=60% Similarity=0.986 Sum_probs=178.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHhcCcCchhHhhhccccccCCCCccEEEeeeeeeeecCcccccc
Q psy417 58 PDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDEDHDEMVVVKDIEMFSMCEHHLVPF 137 (240)
Q Consensus 58 ~~i~~av~~lL~aLGeD~~regL~~TP~RVAk~~~e~~~Gy~~~~~~~~~~~~f~~~~~~lVvv~~I~f~S~CEHHLlPf 137 (240)
++|+.||+.||++||+||+|+||.+||+||||||.++|+||.+++.++++.++|++++++||+|+||+|||+||||||||
T Consensus 36 ~~ie~avr~iL~~lGeDp~RegL~~TP~RvAk~~~e~f~Gy~~~~~~~l~~~~F~~~~~emVivkdI~f~S~CEHHllPf 115 (220)
T 1wur_A 36 ERLQALAAEWLQVIGEDPGREGLLKTPERVAKAWAFLTRGYRQRLEEVVGGAVFPAEGSEMVVVKGVEFYSMCEHHLLPF 115 (220)
T ss_dssp HHHHHHHHHHHHHTTCCTTSGGGTTHHHHHHHHHHHHTGGGGCCHHHHHTTCEEECSCSSCEEEEEEEEEEEETTTCCEE
T ss_pred HHHHHHHHHHHHHhCCCCCccchhhhHHHHHHHHHHHhcccCCChHHhhccccCCCCCCcEEEEeCCcEEEecCCCCCce
Confidence 57999999999999999999999999999999999999999999999998779999999999999999999999999999
Q ss_pred eeeEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceeccccccCCceEEEe
Q psy417 138 YGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTS 217 (240)
Q Consensus 138 ~G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~RGv~~~~s~t~Ts 217 (240)
+|++||||||+|+|+|||||+||||+||||||+|||||+|||++|++.|+|+||+|+++|+||||.||||++++|+|+|+
T Consensus 116 ~G~ahVaYiP~~kVvGLSKlaRiV~~farRlQvQERLT~qIAdal~~~L~p~GVaVvieA~H~CM~mRGV~k~~s~t~Ts 195 (220)
T 1wur_A 116 FGKVHIGYIPDGKILGLSKFARIVDMFARRLQVQERLAVQIAEAIQEVLEPQGVGVVVEGVHLCMMMRGVEKQHSRTVTS 195 (220)
T ss_dssp EEEEEEEEECSSEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHCCSEEEEEEEEEEHHHHSSTTCCSSCEEEEE
T ss_pred EEEEEEEEeCCCeeecHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhCCCcEEEEEEEEEeCchhhCcccCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeeecCChHHHHHHHHhhhc
Q psy417 218 TMLGQFRDDPKTREEFLNLVNT 239 (240)
Q Consensus 218 ~~~G~F~~d~~~R~EFl~ll~~ 239 (240)
+++|+|++|+.+|+|||++|+.
T Consensus 196 a~~G~F~~d~~~R~Efl~li~~ 217 (220)
T 1wur_A 196 AMLGVFRENQKTREEFLSHLRD 217 (220)
T ss_dssp EEEEHHHHCHHHHHHHHHHTC-
T ss_pred eeeeeeCCCHHHHHHHHHHhcc
Confidence 9999999999999999999965
No 2
>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A* 1fb1_A
Probab=100.00 E-value=7.4e-83 Score=563.09 Aligned_cols=185 Identities=76% Similarity=1.195 Sum_probs=178.3
Q ss_pred ccchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHhcCcCchhHhhhccccccCCCCccEEEeeeeeeeecCcc
Q psy417 54 EALLPDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDEDHDEMVVVKDIEMFSMCEHH 133 (240)
Q Consensus 54 ~~~~~~i~~av~~lL~aLGeD~~regL~~TP~RVAk~~~e~~~Gy~~~~~~~~~~~~f~~~~~~lVvv~~I~f~S~CEHH 133 (240)
+++.++|+.||+.||++||+||+|+||.+||+||||||.++|+||.+++.++++.++|++++++||+|+||+|||+||||
T Consensus 45 ~~~~~~ie~avr~iL~~lGeDp~ReGL~~TP~RVAka~~e~f~Gy~~~~~~~~~~~~F~~~~~emVivkdI~f~S~CEHH 124 (230)
T 1is8_A 45 ELNLPNLAAAYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGYQETISDVLNDAIFDEDHDEMVIVKDIDMFSMCEHH 124 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTSTTTTTHHHHHHHHHHHHTGGGGCCTHHHHSSSCCEEEECSCEEEEEEEEEEEETTT
T ss_pred cccHHHHHHHHHHHHHHhCCCCCccchhhHHHHHHHHHHHHhcccCCChHHhhcccccCCCCCceEEEeCCcEEEecCcC
Confidence 44456899999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred cccceeeEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceeccccccCCce
Q psy417 134 LVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSK 213 (240)
Q Consensus 134 LlPf~G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~RGv~~~~s~ 213 (240)
||||+|+|||||||+|+|+|||||+||||+||||||+|||||+|||++|++.|+|+||+|+|+|+||||.||||++.+|+
T Consensus 125 llPf~GkahVaYiP~gkViGLSKlaRiVd~farRlQvQERLT~qIAdaL~~~L~p~GVaVvieA~H~CM~mRGV~k~~s~ 204 (230)
T 1is8_A 125 LVPFVGRVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALQPAGVGVVIEATHMCMVMRGVQKMNSK 204 (230)
T ss_dssp CCEEEEEEEEEEECSEECCCHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHCCSEEEEEEEEEEHHHHTTC--CTTCE
T ss_pred cCceeeEEEEEEcCCCeeccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhCCCceEEEEEEEEecchhcCcccCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeEeeeecCChHHHHHHHHhhh
Q psy417 214 TVTSTMLGQFRDDPKTREEFLNLVN 238 (240)
Q Consensus 214 t~Ts~~~G~F~~d~~~R~EFl~ll~ 238 (240)
|+|++++|+|++|+.+|+|||++|+
T Consensus 205 t~Tsa~~G~F~~d~~~R~EFl~li~ 229 (230)
T 1is8_A 205 TVTSTMLGVFREDPKTREEFLTLIR 229 (230)
T ss_dssp EEEEEEEEHHHHCHHHHHHHHHHHC
T ss_pred EEEEEEEEEecCCHHHHHHHHHHhc
Confidence 9999999999999999999999986
No 3
>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB: 1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A* 4du6_A*
Probab=100.00 E-value=1.6e-81 Score=552.64 Aligned_cols=204 Identities=32% Similarity=0.490 Sum_probs=190.9
Q ss_pred ccccccCCCCCCCCCCCCcccchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHH-HHHhcCcCchhHhhhcccccc-
Q psy417 35 HEKCTFHNDLELDHQPPTREALLPDMTASYKRLLGALGENPDRQGLLKTPERAAKAM-LFFTKGYDQTLEEVLNDAVFD- 112 (240)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~av~~lL~aLGeD~~regL~~TP~RVAk~~-~e~~~Gy~~~~~~~~~~~~f~- 112 (240)
+..+..++|+..+....+.+++.++|+.||+.||++|||||+|+||.+||+|||||| .++|+||+.++.+.++ +|+
T Consensus 14 ~~~~~~~~p~~~~~~~~~~~~~~~~ie~avr~iL~~lGeDp~regL~~TP~RvAka~~~e~f~G~~~~~~~~l~--~f~~ 91 (221)
T 1a8r_A 14 LVARGLETPLRPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFPKIT--LIEN 91 (221)
T ss_dssp HHHTTCSCSCCCCSCCCCHHHHHHHHHHHHHHHHHHTTCCTTSHHHHTHHHHHHHHHHHTTTGGGSGGGCCCCC--EEEC
T ss_pred HHhCCCcCCCCCcccccCcHHHHHHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHHHHHHHHcCCCCCchhhhc--eecc
Confidence 345678888887776677888888999999999999999999999999999999999 5999999999887765 444
Q ss_pred -CCCCccEEEeeeeeeeecCcccccceeeEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCce
Q psy417 113 -EDHDEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGV 191 (240)
Q Consensus 113 -~~~~~lVvv~~I~f~S~CEHHLlPf~G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GV 191 (240)
+++++||+|+||+|||+||||||||+|++||||||+++|+|||||+|+|++||+|||+|||||+|||++|++.|+|+||
T Consensus 92 ~~~~~emViv~dI~f~S~CEHHllPf~G~~hVaYiP~~~VvGLSKlaRiv~~farRlQvQErlT~qIadal~~~l~p~GV 171 (221)
T 1a8r_A 92 KMKVDEMVTVRDITLTSTCESHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNV 171 (221)
T ss_dssp TTCCCSCEEEEEEEEEEEETTTTEEEEEEEEEEECCSSEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHTCSCE
T ss_pred cCCCCCeEEEeCCcEEeecCccCCceeEEEEEEEecCCccccHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHhCCCce
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeEEeceeccccccCCceEEEeeEeeeecCChHHHHHHHHhhhcC
Q psy417 192 AVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLNLVNTK 240 (240)
Q Consensus 192 aVvveA~H~Cm~~RGv~~~~s~t~Ts~~~G~F~~d~~~R~EFl~ll~~~ 240 (240)
+|+|+|+||||.||||++++|+|+|++++|+|++|+.+|+||+++|+.+
T Consensus 172 ~VvieA~H~Cm~mRGv~k~~s~t~Tsa~~G~F~~d~~~R~Efl~li~~~ 220 (221)
T 1a8r_A 172 AVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAVRHH 220 (221)
T ss_dssp EEEEEEEEHHHHSSTTCCSSCEEEEEEECTHHHHCHHHHHHHHHHSCCC
T ss_pred EEEEEEEEeeecccCCCCCCCEEEEeeeeeEeCCCHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999753
No 4
>4f8b_A NADPH-dependent 7-cyano-7-deazaguanine reductase; beta barrel, protein thioimide complex, pterin binding fold, fold; HET: GD1 PE4; 2.50A {Bacillus subtilis subsp} PDB: 4fgc_A*
Probab=96.81 E-value=0.0068 Score=51.09 Aligned_cols=87 Identities=18% Similarity=0.275 Sum_probs=76.3
Q ss_pred cccCCC--CccEE-EeeeeeeeecCcccccceeeEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhc
Q psy417 110 VFDEDH--DEMVV-VKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAV 186 (240)
Q Consensus 110 ~f~~~~--~~lVv-v~~I~f~S~CEHHLlPf~G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l 186 (240)
.|++.+ .+.+| +.-=.|.|.|.=-=.|=+|+++|-|+|++++|-+-.|-+.+.-|--+---+|..|.+|.+-|.+.+
T Consensus 33 ~fpN~~~~~dy~I~~~~PEFtSlCPvTGQPDfatI~I~Y~P~~~~vE~kSLKlYL~SFRnh~~FHE~cvn~I~~DL~~~~ 112 (165)
T 4f8b_A 33 SFPNKHVNRDYFVKFNCPEFTSLCPKTGQPDFATIYISYIPDEKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELM 112 (165)
T ss_dssp EEECSCCSSCEEEEEEEEEEEEECTTTCCEEEEEEEEEEECSSEEECHHHHHHHHHTTTTCBCCHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCCCeEEEEecccceecCCCCCCCcEEEEEEEEEeCCccCcHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence 466554 34443 445569999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEe
Q psy417 187 QPAGVAVVVE 196 (240)
Q Consensus 187 ~p~GVaVvve 196 (240)
+|+-+.|...
T Consensus 113 ~P~~L~V~a~ 122 (165)
T 4f8b_A 113 DPRYIEVWGK 122 (165)
T ss_dssp CCSEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 9999998875
No 5
>3uxj_A NADPH-dependent 7-cyano-7-deazaguanine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE PRF NAP; 1.40A {Vibrio cholerae o1 biovar el tor} PDB: 3s19_A* 3rjb_A* 3bp1_A* 3uxv_A* 3rzp_A* 3rj4_A* 3rzq_A* 4ghm_A*
Probab=83.70 E-value=1.8 Score=39.25 Aligned_cols=70 Identities=21% Similarity=0.315 Sum_probs=63.2
Q ss_pred eeeeecCcccccceeeEEEEEeCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEe
Q psy417 125 EMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVE 196 (240)
Q Consensus 125 ~f~S~CEHHLlPf~G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvve 196 (240)
.|.|.|.=-=.|=||+++|-|+|+ + |-+-.|-+.+--|--+---.|..|.+|.+-|.+.++|+-+.|...
T Consensus 192 efts~CPvTGQPDfati~I~Y~p~-~-vE~kSLk~Yl~SFRnh~~FHE~cvn~I~~DL~~~~~P~~L~V~a~ 261 (290)
T 3uxj_A 192 LLKSNCLITNQPDWGSVEIAYHGA-K-MNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYAR 261 (290)
T ss_dssp EEEEEETTTCCEEEEEEEEEEEEE-E-ECHHHHHHHHHTTTTCEECHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred ccccCCCCCCCCceEEEEEEEeCC-c-cCHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 479999999999999999999986 3 688888898888888899999999999999999999999888765
No 6
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=40.45 E-value=60 Score=24.33 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=45.2
Q ss_pred ccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceecccc
Q psy417 152 LGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGV 207 (240)
Q Consensus 152 iGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~RGv 207 (240)
+.+..+..|-+.|.. +.-+++-++||+.|.+.+.+.++..-+.+..+++.+.+.
T Consensus 36 i~id~f~~in~~~G~--~~gd~~L~~~a~~L~~~~~~~~~~~R~~~d~F~ill~~~ 89 (171)
T 3icl_A 36 LDVDNFKSINDSLGH--LVGDRLLRATAERIRTAVRDGDTVARIGGDKFTILLNGA 89 (171)
T ss_dssp EEETTHHHHHHHHCH--HHHHHHHHHHHHHHHHHSCTTCEEEEETTTEEEEEESSC
T ss_pred EEChHhhHHHHHhCh--HHHHHHHHHHHHHHHHhcCCCCEEEEecCCEEEEEecCC
Confidence 467778888888864 556889999999999999999999999999999887664
No 7
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding, nucleus, phosphorylation, chromatin regulator, UBL conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo sapiens}
Probab=37.54 E-value=16 Score=30.43 Aligned_cols=53 Identities=21% Similarity=0.306 Sum_probs=32.0
Q ss_pred CCccEEEeeeeeeeecCccc---ccceeeEEEEEeCCCccccchhHHHHHHHHhcch
Q psy417 115 HDEMVVVKDIEMFSMCEHHL---VPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRL 168 (240)
Q Consensus 115 ~~~lVvv~~I~f~S~CEHHL---lPf~G~~hIaYiP~~~ViGLSKl~Rlvd~~ArRl 168 (240)
++-++|.=+|+=--.=+.|= -||.|.-.+||+|+..= |.--|..|-..|-+||
T Consensus 49 ~gtI~I~Y~ip~GiQg~~HPnPGk~y~G~~R~AYLPdn~e-Gr~VL~LL~~AF~~rL 104 (159)
T 3pg6_A 49 FGTIVITYSMKAGIQTEEHPNPGKRYPGIQRTAYLPDNKE-GRKVLKLLYRAFDQKL 104 (159)
T ss_dssp SEEEEEEEEECCEECCTTSSSTTCEECCEEEEEEEEESHH-HHHHHHHHHHHHHTTC
T ss_pred CCeEEEEEEcCCccccCcCCCCCCccCCCCeEEECCCCHH-HHHHHHHHHHHHHcCC
Confidence 45667776776544555554 46999999999997521 2222334444555544
No 8
>3r2e_A Dihydroneopterin aldolase; structural genomics, IDP90567, center for structural genomic infectious diseases, csgid, bifunctional; 2.15A {Yersinia pestis}
Probab=34.88 E-value=54 Score=26.15 Aligned_cols=89 Identities=12% Similarity=0.228 Sum_probs=54.5
Q ss_pred cccCCCCccEEEeeeeeeeecCcccc--------cceeeEEEEEeC------C--CccccchhHHHHHHHHh--cchhhH
Q psy417 110 VFDEDHDEMVVVKDIEMFSMCEHHLV--------PFYGKVSIGYLP------C--KKILGLSKLARIVEIYS--RRLQVQ 171 (240)
Q Consensus 110 ~f~~~~~~lVvv~~I~f~S~CEHHLl--------Pf~G~~hIaYiP------~--~~ViGLSKl~Rlvd~~A--rRlQiQ 171 (240)
.|.++..+.|.++|+.|+.. |=.+ ||.-.+.+.|=. + ...+--+.+.+.+.-+. .+.++.
T Consensus 19 ~~~~~~mD~I~I~~L~~~a~--iGv~~~Er~~~Q~~~vdl~l~~d~~~A~~sDdl~~tvdY~~v~~~I~~~v~~~~f~Ll 96 (143)
T 3r2e_A 19 YFQSNAMDIVFIEELSVITT--IGVYDWEQTIQQKLVFDIEMGWDNRKAAGSDDVNDCLSYADISEAVIQHVGSQRFALV 96 (143)
T ss_dssp -----CCEEEEEEEEEEEEE--ECSSHHHHTSEEEEEEEEEEEECHHHHHTCCCTTSSCCHHHHHHHHHHHHHSSEESCH
T ss_pred ehhhcCCCEEEECceEEEEE--ECCCHHHcccCceEEEEEEEEEcchhcccccccccccCHHHHHHHHHHHHhcCCcccH
Confidence 35555667799999999863 3222 344444555410 1 12344555666555544 578999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEeeEEe
Q psy417 172 ERLTKQIAIAVTKAVQPAGVAVVVEGVHM 200 (240)
Q Consensus 172 ERLT~qIa~aL~~~l~p~GVaVvveA~H~ 200 (240)
|.|+.+||+.|.+.-....|-|.++=-+.
T Consensus 97 E~LAe~Ia~~ll~~~~v~~v~V~V~KP~a 125 (143)
T 3r2e_A 97 ERVAEEVAELLLRRFNSPWVRIKVSKPGA 125 (143)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEEECTTS
T ss_pred HHHHHHHHHHHHHhCCccEEEEEEECCCC
Confidence 99999999999987766667776654333
No 9
>2o90_A DHNA, dihydroneopterin aldolase; monapterin, drug design, atomic resolution, X-RAY crystallography, lyase; HET: NEU; 1.07A {Escherichia coli} PDB: 2o9m_A*
Probab=34.41 E-value=66 Score=24.53 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=33.1
Q ss_pred ccchhHHHHHHHH-h-cchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEE
Q psy417 152 LGLSKLARIVEIY-S-RRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVH 199 (240)
Q Consensus 152 iGLSKl~Rlvd~~-A-rRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H 199 (240)
+--+.+.+.+.-+ . .+.++.|.|+..||+.|.+.-+...|-|.+.=-+
T Consensus 51 vdY~~v~~~i~~~v~~~~~~LiE~lA~~Ia~~~l~~~~v~~v~V~v~Kp~ 100 (122)
T 2o90_A 51 LSYADIAETVVSHVEGARFALVERVAEEVAELLLARFNSPWVRIKLSKPG 100 (122)
T ss_dssp CCHHHHHHHHHHHHTTCEESCHHHHHHHHHHHHHHHSSCSCEEEEEECTT
T ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhCCceEEEEEEECCC
Confidence 3444555555443 3 3569999999999999988766666777665433
No 10
>4aey_A D-erythro-7,8-dihydroneopterin triphosphate epime; isomerase, pteridine biosynthesis; 3.00A {Pseudomonas aeruginosa}
Probab=32.56 E-value=63 Score=26.20 Aligned_cols=82 Identities=20% Similarity=0.243 Sum_probs=50.7
Q ss_pred CccEEEeeeeeeeecCccccc--------ceeeEEEEEeCC-----C---ccccchhHHH-HHHHHh-cchhhHHHHHHH
Q psy417 116 DEMVVVKDIEMFSMCEHHLVP--------FYGKVSIGYLPC-----K---KILGLSKLAR-IVEIYS-RRLQVQERLTKQ 177 (240)
Q Consensus 116 ~~lVvv~~I~f~S~CEHHLlP--------f~G~~hIaYiP~-----~---~ViGLSKl~R-lvd~~A-rRlQiQERLT~q 177 (240)
.+.|.++|+.|+.. |=.+| |.-.+.+.|=.. + ..+--..+.+ |.+++. .+.++.|.|+.+
T Consensus 41 ~D~I~I~~L~~~a~--iGV~~~Er~~gQ~~~VDl~l~~d~~~A~~sDdL~dTvdY~~v~~~I~~~v~~~~f~LIEtLAe~ 118 (156)
T 4aey_A 41 MARIRVKDLRLRTF--IGIKEEEILNKQDVLINLTILYPAADAVEVNDIEHALNYRTITKAIIRHVEENRFALLERMTQE 118 (156)
T ss_dssp SSEEEEEEEEEEEE--ECSSHHHHHSCEEEEEEEEEECCC----------CCCHHHHHHHHHHHHHHTSEESCHHHHHHH
T ss_pred ccEEEEcceEEEEE--ECCCHHHhccCcEEEEEEEEEecchhccccCcchhccCHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 46789999999864 33332 333344444211 1 2344455555 444444 567999999999
Q ss_pred HHHHHHhhcCCCceEEEEeeEE
Q psy417 178 IAIAVTKAVQPAGVAVVVEGVH 199 (240)
Q Consensus 178 Ia~aL~~~l~p~GVaVvveA~H 199 (240)
||+.+.+.-+-..|-|.++=-+
T Consensus 119 Ia~~ll~~~~v~~V~V~V~KP~ 140 (156)
T 4aey_A 119 ILDLVMENPAVRYAEVEVDKPH 140 (156)
T ss_dssp HHHHHHHSCCCSEEEEEEEEET
T ss_pred HHHHHHhcCCccEEEEEEECCC
Confidence 9999987655666666665433
No 11
>1nbu_A DHNA, probable dihydroneopterin aldolase; anti-parallel, beta-sheet, two alpha helices, structural genomics, PSI; HET: PH2; 1.60A {Mycobacterium tuberculosis} SCOP: d.96.1.3 PDB: 1nbu_B* 1nbu_C*
Probab=32.18 E-value=75 Score=24.09 Aligned_cols=44 Identities=20% Similarity=0.139 Sum_probs=28.3
Q ss_pred ccchhHHHHHHH-Hh-cchhhHHHHHHHHHHHHHhhc-CCCceEEEEe
Q psy417 152 LGLSKLARIVEI-YS-RRLQVQERLTKQIAIAVTKAV-QPAGVAVVVE 196 (240)
Q Consensus 152 iGLSKl~Rlvd~-~A-rRlQiQERLT~qIa~aL~~~l-~p~GVaVvve 196 (240)
+--+.+.+.+.- +. .+.++.|.|+.+||+.+.+ . +...|-|.++
T Consensus 52 vdY~~v~~~i~~~v~~~~~~LiE~lA~~Ia~~~l~-~~~v~~v~V~v~ 98 (119)
T 1nbu_A 52 YDYVRLASRAAEIVAGPPRKLIETVGAEIADHVMD-DQRVHAVEVAVH 98 (119)
T ss_dssp CCHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHT-STTCCEEEEEEE
T ss_pred cCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc-CCCccEEEEEEE
Confidence 344445554443 33 3569999999999999988 4 3344555543
No 12
>3v9o_A Dihydroneopterin aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: GUN; 1.45A {Burkholderia thailandensis}
Probab=30.15 E-value=75 Score=25.14 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=51.1
Q ss_pred CccEEEeeeeeeeecCcccc--------cceeeEEEEEe--C----CC---ccccchhHHHHHHHHh--cchhhHHHHHH
Q psy417 116 DEMVVVKDIEMFSMCEHHLV--------PFYGKVSIGYL--P----CK---KILGLSKLARIVEIYS--RRLQVQERLTK 176 (240)
Q Consensus 116 ~~lVvv~~I~f~S~CEHHLl--------Pf~G~~hIaYi--P----~~---~ViGLSKl~Rlvd~~A--rRlQiQERLT~ 176 (240)
.+-|.++|+.|+.. |=.+ ||.-.+.+.|= + .+ ..+--..+.+.+.-+. .+.++.|.|+.
T Consensus 22 ~D~I~I~~L~~~a~--iGv~~~Er~~~Q~~~vdl~l~~d~~~A~~~sDdl~~tvdY~~v~~~I~~~v~~~~~~LlE~lAe 99 (143)
T 3v9o_A 22 CRRLYLRNHEVYMN--IGAFEHEKRGEQRVVINVDLFVPLALTTPVEDKLREVVDYDLMKQSVAQCVARGHIHLQETLCD 99 (143)
T ss_dssp EEEEEEEEEEEEEC--CCC------CCEEEEEEEEEEEEGGGSCCSSCCGGGSCCTHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred CCEEEEcceEEEEE--ECCCHHHHCCCCeEEEEEEEEEcchhccCCCccchhccCHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 45688999999864 3233 45555556652 1 12 3456666776666554 46899999999
Q ss_pred HHHHHHHhhcCCCceEEEEe
Q psy417 177 QIAIAVTKAVQPAGVAVVVE 196 (240)
Q Consensus 177 qIa~aL~~~l~p~GVaVvve 196 (240)
+||+.|.+.-+-..|-|.++
T Consensus 100 ~Ia~~il~~~~v~~v~V~V~ 119 (143)
T 3v9o_A 100 AIAASLLAHDAVRAVRVSTE 119 (143)
T ss_dssp HHHHHHHSSTTCCEEEEEEE
T ss_pred HHHHHHHhcCCccEEEEEEE
Confidence 99999997533444555444
No 13
>3o1k_A Dihydroneopterin aldolase FOLB, putative; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Vibrio cholerae o1 biovar el tor}
Probab=29.09 E-value=79 Score=24.59 Aligned_cols=81 Identities=10% Similarity=0.114 Sum_probs=49.4
Q ss_pred ccEEEeeeeeeeecCcccc--------cceeeEEEEEeC------C--CccccchhHHHHHHHHh--cchhhHHHHHHHH
Q psy417 117 EMVVVKDIEMFSMCEHHLV--------PFYGKVSIGYLP------C--KKILGLSKLARIVEIYS--RRLQVQERLTKQI 178 (240)
Q Consensus 117 ~lVvv~~I~f~S~CEHHLl--------Pf~G~~hIaYiP------~--~~ViGLSKl~Rlvd~~A--rRlQiQERLT~qI 178 (240)
+-|.++|+.|+.. |=.+ ||.-.+.+.|=. + ...+--+.+.+.+.-+. .+.++.|.|+.+|
T Consensus 17 D~I~i~~L~~~a~--iGv~~~Er~~~Q~~~vdl~l~~d~~~a~~sDdl~~tvdY~~v~~~I~~~v~~~~~~LiE~lA~~I 94 (132)
T 3o1k_A 17 DKVFIEQLEVITT--IGVYDWEQQIKQKLVLDLEMAHDNRAAGKSDDVADALDYAQVSQAVLEHIEQGRFLLVERVAEEV 94 (132)
T ss_dssp CEEEEEEEEEEEE--ECSSTTGGGSCEEEEEEEEEECCCHHHHHHCCGGGSCCHHHHHHHHHHHHHTCEESCHHHHHHHH
T ss_pred cEEEECceEEEEE--EcCCHHHhccCceEEEEEEEEEcchhcccccccccccCHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4588899988753 2222 233333444311 1 12334445555555444 3789999999999
Q ss_pred HHHHHhhcCCCceEEEEeeEE
Q psy417 179 AIAVTKAVQPAGVAVVVEGVH 199 (240)
Q Consensus 179 a~aL~~~l~p~GVaVvveA~H 199 (240)
|+.|.+.-....|-|.++=-+
T Consensus 95 a~~ll~~~~v~~v~V~V~KP~ 115 (132)
T 3o1k_A 95 AELIMTRFAVPWLRIRLTKPG 115 (132)
T ss_dssp HHHHHHHHCCSEEEEEEEETT
T ss_pred HHHHHHhCCccEEEEEEECCC
Confidence 999998776666666665433
No 14
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=29.04 E-value=87 Score=23.63 Aligned_cols=53 Identities=8% Similarity=0.214 Sum_probs=43.3
Q ss_pred ccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceeccc
Q psy417 152 LGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRG 206 (240)
Q Consensus 152 iGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~RG 206 (240)
+.+..+..|-+.|.. +.-+++-++||+.|.+.+.+.++..-+.+..+++.+.+
T Consensus 45 i~id~f~~in~~~G~--~~gd~~L~~ia~~L~~~~~~~~~~~R~~~d~F~ill~~ 97 (177)
T 3ign_A 45 FDIDHFKPVNDTYGH--LAGDEVIRHTADVTRNNIRQSDSAGRYGGEEFGIILPE 97 (177)
T ss_dssp EEETTHHHHHHHHCH--HHHHHHHHHHHHHHHTTSCTTSEEEECSSSEEEEEEET
T ss_pred EEchhhHHHHHhhCh--HHHHHHHHHHHHHHHHhCCCCCEEEEecCCeEEEEeCC
Confidence 466677777777764 66788999999999999999999888899998887643
No 15
>1sql_A Dihydroneopterin aldolase; tetrahydrofolate biosynthesis, aldolase classes, retroaldol reaction, purin binding, schiff base, lyase; HET: GUN; 2.20A {Arabidopsis thaliana} SCOP: d.96.1.3
Probab=28.31 E-value=92 Score=24.76 Aligned_cols=83 Identities=11% Similarity=0.164 Sum_probs=50.4
Q ss_pred CccEEEeeeeeeeecCcccc--------cceeeEEEEEeCC-----C---ccccchhHHHHHHH-Hh-cchhhHHHHHHH
Q psy417 116 DEMVVVKDIEMFSMCEHHLV--------PFYGKVSIGYLPC-----K---KILGLSKLARIVEI-YS-RRLQVQERLTKQ 177 (240)
Q Consensus 116 ~~lVvv~~I~f~S~CEHHLl--------Pf~G~~hIaYiP~-----~---~ViGLSKl~Rlvd~-~A-rRlQiQERLT~q 177 (240)
.+-|.++|+.|+.. |=.+ ||.-.+.+.|=.. + ..+--+.+.+.+.- +. .+.++.|.|+.+
T Consensus 21 md~I~I~~L~~~a~--iGv~~~Er~~~Q~~~vdl~l~~d~~~A~~sDdl~~tvdY~~v~~~I~~~v~~~~f~LiE~lA~~ 98 (146)
T 1sql_A 21 GDKLILKGLKFYGF--HGAIAEERTLGQMFLVDIDAWVSLKKAGESDNLEDTISYVDIFSLAKEIVEGSPRNLLETVAEL 98 (146)
T ss_dssp CCEEEEEEEEEEEC--CCSSHHHHHHCEEEEEEEEEECCCHHHHHHCCGGGSCCHHHHHHHHHHHHTSSCCSCHHHHHHH
T ss_pred CCEEEECCeEEEEE--ECCCHHHhccCCEEEEEEEEEEcchhcccccCchhccCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 35688999999864 3222 3444455544211 1 23444455555544 33 356999999999
Q ss_pred HHHHHHhhc-CCCceEEEEeeEEe
Q psy417 178 IAIAVTKAV-QPAGVAVVVEGVHM 200 (240)
Q Consensus 178 Ia~aL~~~l-~p~GVaVvveA~H~ 200 (240)
||+.|.+.. +...|-|.+.=-+.
T Consensus 99 Ia~~il~~fp~v~~v~V~V~Kp~a 122 (146)
T 1sql_A 99 IASKTLEKFHQINAVRVKLSKPNV 122 (146)
T ss_dssp HHHHHHHHCTTCCEEEEEEEESSC
T ss_pred HHHHHHHHCCCceEEEEEEECCcC
Confidence 999998764 45566666654443
No 16
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=27.33 E-value=62 Score=21.33 Aligned_cols=28 Identities=0% Similarity=0.236 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHhhc--CCCceEEEEe
Q psy417 169 QVQERLTKQIAIAVTKAV--QPAGVAVVVE 196 (240)
Q Consensus 169 QiQERLT~qIa~aL~~~l--~p~GVaVvve 196 (240)
+--++|.+.|++++.+.+ .|..|.|+++
T Consensus 13 eqK~~L~~~it~~~~~~lg~~~~~v~V~i~ 42 (62)
T 3m20_A 13 GKKREFVERLTSVAAEIYGMDRSAITILIH 42 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceEEEEEE
Confidence 344678888888888875 4789999885
No 17
>1b9l_A Protein (epimerase); isomerase; 2.90A {Escherichia coli} SCOP: d.96.1.3
Probab=27.18 E-value=81 Score=23.88 Aligned_cols=80 Identities=13% Similarity=0.187 Sum_probs=45.6
Q ss_pred ccEEEeeeeeeeecCccc--------ccceeeEEEEEeCC--------CccccchhHHHHHHH-Hh-cchhhHHHHHHHH
Q psy417 117 EMVVVKDIEMFSMCEHHL--------VPFYGKVSIGYLPC--------KKILGLSKLARIVEI-YS-RRLQVQERLTKQI 178 (240)
Q Consensus 117 ~lVvv~~I~f~S~CEHHL--------lPf~G~~hIaYiP~--------~~ViGLSKl~Rlvd~-~A-rRlQiQERLT~qI 178 (240)
+-|.++|+.|+.. |=. -||.-.+.+.|=.. ..-+--+.+.+.+.- +. .+.++.|.|+.+|
T Consensus 6 d~I~i~~l~~~~~--iGv~~~Er~~~Q~~~vdl~l~~d~~~a~~sDdl~~tvdY~~v~~~i~~~v~~~~~~LiE~lA~~I 83 (120)
T 1b9l_A 6 AIIRIKNLRLRTF--IGIKEEEINNRQDIVINVTIHYPADKARTSEDINDALNYRTVTKNIIQHVENNRFSLLEKLTQDV 83 (120)
T ss_dssp EEEEEEEEEEEEE--ECSSHHHHHSCEEEEEEEEEEEEHHHHHGGGTCSSCCCHHHHHHHHHHHHHTSEESCHHHHHHHH
T ss_pred CEEEECceEEEEE--ecCCHHHhCcCCEEEEEEEEeecchhhcccCCcccccCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 3477888888743 222 23444445544210 122444455555544 33 3569999999999
Q ss_pred HHHHHhhcCCCceEEEEeeE
Q psy417 179 AIAVTKAVQPAGVAVVVEGV 198 (240)
Q Consensus 179 a~aL~~~l~p~GVaVvveA~ 198 (240)
|+.+.+.-+...|-|.+.=-
T Consensus 84 a~~~l~~~~v~~v~V~v~Kp 103 (120)
T 1b9l_A 84 LDIAREHHWVTYAEVEIDKL 103 (120)
T ss_dssp HHHHTCSTTCSEEEEEEEEE
T ss_pred HHHHhccCCceEEEEEEECC
Confidence 99997643334455555433
No 18
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=26.28 E-value=40 Score=22.40 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHhh
Q psy417 169 QVQERLTKQIAIAVTKA 185 (240)
Q Consensus 169 QiQERLT~qIa~aL~~~ 185 (240)
+.||.|+-|||..|-..
T Consensus 12 ~aqEEMAWqIA~MIV~D 28 (45)
T 3im4_C 12 EAQEELAWKIAKMIVSD 28 (45)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67999999999988653
No 19
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=26.11 E-value=1.2e+02 Score=22.63 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHhhcC-C-CceEEEEeeEEeceeccccccCCceEEEeeEeeee
Q psy417 170 VQERLTKQIAIAVTKAVQ-P-AGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQF 223 (240)
Q Consensus 170 iQERLT~qIa~aL~~~l~-p-~GVaVvveA~H~Cm~~RGv~~~~s~t~Ts~~~G~F 223 (240)
+++.|..++..++.+.++ | .-|+|.++. -.||...|-.++.+ ..+-...|..
T Consensus 14 ~~~~l~~~ls~~~a~~lgKpe~~vmV~v~~-~~~m~fgGs~~P~a-~~~v~siG~~ 67 (117)
T 3kan_A 14 VPAGLEKRLCAAAASILGKPADRVNVTVRP-GLAMALSGSTEPCA-QLSISSIGVV 67 (117)
T ss_dssp SCTTHHHHHHHHHHHHHTCCGGGCEEEEEC-SCCCCBTTBCSSCE-EEEEEEESSS
T ss_pred chHHHHHHHHHHHHHHHCCChHHEEEEEeC-CCeEEECCCCCceE-EEEEEEecCC
Confidence 345566666666666665 4 477888874 56888888777654 4555555765
No 20
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=26.03 E-value=33 Score=30.16 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=42.4
Q ss_pred CcccccceeeEEEEEeC-C-CccccchhHHHHHHHHhcc----------------hhhHHHHHHHHHHHHHhhcCCCceE
Q psy417 131 EHHLVPFYGKVSIGYLP-C-KKILGLSKLARIVEIYSRR----------------LQVQERLTKQIAIAVTKAVQPAGVA 192 (240)
Q Consensus 131 EHHLlPf~G~~hIaYiP-~-~~ViGLSKl~Rlvd~~ArR----------------lQiQERLT~qIa~aL~~~l~p~GVa 192 (240)
-||+.||.|..-.-.-| + +.=|-+..+.++++|+..- +...||. ++.+...+..+. .+-
T Consensus 7 ~~~~~~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~--~v~~~~~~~~~g-rvp 83 (301)
T 1xky_A 7 HHHMIDFGTIATAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKV--ALYRHVVSVVDK-RVP 83 (301)
T ss_dssp ---CCCCCSEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHH--HHHHHHHHHHTT-SSC
T ss_pred cccccCCCceEEeeECcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHH--HHHHHHHHHhCC-Cce
Confidence 58999999976666667 3 3346899999999998643 4667774 355555555443 355
Q ss_pred EEEeeEEec
Q psy417 193 VVVEGVHMC 201 (240)
Q Consensus 193 VvveA~H~C 201 (240)
|++-.-..+
T Consensus 84 ViaGvg~~~ 92 (301)
T 1xky_A 84 VIAGTGSNN 92 (301)
T ss_dssp EEEECCCSC
T ss_pred EEeCCCCCC
Confidence 655444433
No 21
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=25.26 E-value=2e+02 Score=20.98 Aligned_cols=63 Identities=21% Similarity=0.146 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHhhcC-CC-ceEEEEeeEEeceeccccccCCceEEEeeEeeeecCChHHHHHHHHh
Q psy417 170 VQERLTKQIAIAVTKAVQ-PA-GVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLNL 236 (240)
Q Consensus 170 iQERLT~qIa~aL~~~l~-p~-GVaVvveA~H~Cm~~RGv~~~~s~t~Ts~~~G~F~~d~~~R~EFl~l 236 (240)
..+.|..++..++.+.++ |. -|+|.++.. .||...|-.++. -.++-...|.. +++.++++.+.
T Consensus 15 ~~~~l~~~ls~~~a~~lgKPe~~v~V~~~~~-~~m~fgGs~~p~-a~v~i~~ig~~--~~e~~~~l~~~ 79 (114)
T 4dh4_A 15 QQDALLKDAEKAVADALGKPLSYVMVGYSQT-GQMRFGGSSDPC-AFIRVASIGGI--TSSTNCKIAAA 79 (114)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEEC-SCCCBTTBCSCC-EEEEEEEESCC--CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCChHHEEEEEeCC-ceEEECCcCCCe-EEEEEEEEcCC--CHHHHHHHHHH
Confidence 446677777777777765 44 677777643 578887776664 45555555643 44555444443
No 22
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=25.18 E-value=2.2e+02 Score=21.83 Aligned_cols=61 Identities=10% Similarity=0.148 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHhhcCCCc-eEEEEeeEEeceeccccccCCceEEEeeEeeeecCChHHHHHHHHhh
Q psy417 170 VQERLTKQIAIAVTKAVQPAG-VAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLNLV 237 (240)
Q Consensus 170 iQERLT~qIa~aL~~~l~p~G-VaVvveA~H~Cm~~RGv~~~~s~t~Ts~~~G~F~~d~~~R~EFl~ll 237 (240)
+.++|++.+|+.+. +|.. ++|.++. -.||...|-.++. -.+.-...|.. +++.+++|.+.|
T Consensus 40 l~~~ls~~la~~lg---KPe~~v~V~~~~-~~~m~fgGs~dP~-a~v~v~sig~~--~~e~n~~~s~~i 101 (133)
T 3fwt_A 40 LSAAYGMICREELG---KPEDFVMTAFSD-KTPISFQGSTAPA-AYVRVESWGEY--APSKPKMMTPRI 101 (133)
T ss_dssp HHHHHHHHHHHHHS---CTTCCCEEEEEC-SCCCCBTTBCSSC-EEEEEEEEECC--CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---cCcCEEEEEEEC-CceEEECCCCCCe-EEEEEEECCCC--CHHHHHHHHHHH
Confidence 33445555555543 2554 4555543 4577777776654 45555555654 445555555443
No 23
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition, xanthomonas Ca signaling protein-inhibitor complex; HET: C2E; 1.90A {Xanthomonas campestris PV}
Probab=23.37 E-value=1.3e+02 Score=22.49 Aligned_cols=53 Identities=9% Similarity=0.091 Sum_probs=43.3
Q ss_pred ccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceeccc
Q psy417 152 LGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRG 206 (240)
Q Consensus 152 iGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~RG 206 (240)
+.+..+..|-+.|.. +.=.++-++||+.|.+.+.+.++..-+.+..+++.+.+
T Consensus 48 idid~f~~in~~~G~--~~gd~~L~~ia~~L~~~~~~~~~~~R~~~deF~il~~~ 100 (167)
T 3qyy_A 48 LDMDNLKPINDRFGH--LAGDRVLVRLVESAYGWLGAQDWIGRWGGDEFLIGVHA 100 (167)
T ss_dssp EEESSHHHHHHHHCH--HHHHHHHHHHHHHHTTTCCTTCEEEEEETTEEEEEECS
T ss_pred EechhhhHHHhhcCc--HHHHHHHHHHHHHHHHhcCCCCEEEeecCceEEEEcCC
Confidence 466677777777764 55678889999999999999999999999999887654
No 24
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2, protein structure initiative; 2.24A {Caldicellulosiruptor saccharolyticus}
Probab=22.37 E-value=1.4e+02 Score=22.64 Aligned_cols=53 Identities=11% Similarity=0.202 Sum_probs=42.4
Q ss_pred ccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhcCCCceEEEEeeEEeceeccc
Q psy417 152 LGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRG 206 (240)
Q Consensus 152 iGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l~p~GVaVvveA~H~Cm~~RG 206 (240)
+.+..+..|-+.|.. +.=.++-++||+.|.+.+.+.++..-+.+..+++.+.+
T Consensus 42 idid~f~~in~~~G~--~~gd~lL~~ia~~L~~~~~~~~~~~R~~~d~F~il~~~ 94 (178)
T 3mtk_A 42 LEVRDLEKLNVTYGY--DLVDELIIHISKRIKDIAGEGNKAFKIGFDRFAIICKS 94 (178)
T ss_dssp EEETTHHHHHHHHCH--HHHHHHHHHHHHHHHHHHCSSSEEEEEETTEEEEEEEC
T ss_pred EEhhHhhHHHHHhCh--HHHHHHHHHHHHHHHHhcCCCCEEEEecCCEEEEEecC
Confidence 466677777777764 55678889999999999999998888888888887654
No 25
>1z9w_A DHNA, dihydroneopterin aldolase; FOLB, structural genomics, TB ST genomics; 2.50A {Mycobacterium tuberculosis H37RV} SCOP: d.96.1.3
Probab=21.93 E-value=1e+02 Score=24.02 Aligned_cols=46 Identities=20% Similarity=0.121 Sum_probs=28.3
Q ss_pred cchhHHHHHHH-Hh-cchhhHHHHHHHHHHHHHhhc-CCCceEEEEeeEE
Q psy417 153 GLSKLARIVEI-YS-RRLQVQERLTKQIAIAVTKAV-QPAGVAVVVEGVH 199 (240)
Q Consensus 153 GLSKl~Rlvd~-~A-rRlQiQERLT~qIa~aL~~~l-~p~GVaVvveA~H 199 (240)
--+.+.+.+.- +. .+.++.|.|+.+||+.|.+ . +...|-|.++=-+
T Consensus 53 dY~~v~~~i~~~v~~~~~~LiE~lA~~Ia~~il~-~~~v~~v~V~v~Kp~ 101 (133)
T 1z9w_A 53 DYVRLASRAAEIVAGPPRKLIETVGAEIADHVMD-DQRVHAVEVAVHKPQ 101 (133)
T ss_dssp CHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHH-STTEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhc-CCCccEEEEEEECCC
Confidence 33344444433 33 4569999999999999988 4 2234555544333
No 26
>1dhn_A DHNA, 7,8-dihydroneopterin aldolase; pterin binding, folate biosynthesis, antibiotic target, beta; 1.65A {Staphylococcus aureus} SCOP: d.96.1.3 PDB: 1rri_A* 1rrw_A* 1rry_A* 1rs2_A* 1rs4_A* 1rsd_A* 1rsi_A* 1u68_A* 2dhn_A* 2nm2_A* 2nm3_A*
Probab=21.40 E-value=1.1e+02 Score=23.29 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=44.6
Q ss_pred cEEEeeeeeeeecCccc--------ccceeeEEEEEeCC-----C---ccccchhHHHHHHHH-h-cchhhHHHHHHHHH
Q psy417 118 MVVVKDIEMFSMCEHHL--------VPFYGKVSIGYLPC-----K---KILGLSKLARIVEIY-S-RRLQVQERLTKQIA 179 (240)
Q Consensus 118 lVvv~~I~f~S~CEHHL--------lPf~G~~hIaYiP~-----~---~ViGLSKl~Rlvd~~-A-rRlQiQERLT~qIa 179 (240)
-|.++|+.|+.. |=. -||.-.+.+.|=.. + ..+--+.+.+.+.-+ . .+.++.|.|+.+||
T Consensus 4 ~I~i~~l~~~~~--iGv~~~Er~~~Q~~~vdl~l~~d~~~a~~sDdl~~tvdY~~v~~~i~~~v~~~~~~LiE~lA~~Ia 81 (121)
T 1dhn_A 4 TIFLKGMRFYGY--HGALSAENEIGQIFKVDVTLKVDLSEAGRTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIA 81 (121)
T ss_dssp EEEEEEEEEEEC--CSSSHHHHHHCEEEEEEEEEEECCHHHHHHCCGGGSCCHHHHHHHHHHHHTSSCCSCHHHHHHHHH
T ss_pred EEEECCeEEEEE--ECCCHHHHccCCEEEEEEEEEEcchhccccCCccceeCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 356677777653 222 23444555555321 1 234455565555543 3 45699999999999
Q ss_pred HHHHhhcC-CCceEEEEe
Q psy417 180 IAVTKAVQ-PAGVAVVVE 196 (240)
Q Consensus 180 ~aL~~~l~-p~GVaVvve 196 (240)
+.|.+... ...|-|.+.
T Consensus 82 ~~~l~~~~~v~~v~V~v~ 99 (121)
T 1dhn_A 82 NRINSQYNRVMETKVRIT 99 (121)
T ss_dssp HHHHHHCTTEEEEEEEEE
T ss_pred HHHHHHCCCceEEEEEEE
Confidence 99987542 334455444
No 27
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=21.25 E-value=1.6e+02 Score=22.55 Aligned_cols=53 Identities=15% Similarity=0.305 Sum_probs=42.8
Q ss_pred ccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhhc-CCCceEEEEeeEEeceeccc
Q psy417 152 LGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAV-QPAGVAVVVEGVHMCMVMRG 206 (240)
Q Consensus 152 iGLSKl~Rlvd~~ArRlQiQERLT~qIa~aL~~~l-~p~GVaVvveA~H~Cm~~RG 206 (240)
+.+..+..|-+.|.. +.-.++-++||+.|.+.+ .+.++..-+.+..+++.+.+
T Consensus 67 idid~f~~in~~~G~--~~gd~~L~~ia~~L~~~~~~~~~~~~R~~~d~F~il~~~ 120 (206)
T 3i5c_A 67 IDVDYFKSYNDTFGH--VAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPG 120 (206)
T ss_dssp EEETTHHHHHHHHCH--HHHHHHHHHHHHHHHTTCCSTTCEEEEEETTEEEEEEET
T ss_pred EECcchhHHHhccCh--hHHHHHHHHHHHHHHHhcCCCCcEEEEecCCeEEEEECC
Confidence 467778888888864 667889999999999888 67788888899999888654
No 28
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=20.98 E-value=1.9e+02 Score=22.28 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhcC-CC-ceEEEEeeEEeceeccccccCCceEEEeeEeeeecCChHHHHHHHHhh
Q psy417 173 RLTKQIAIAVTKAVQ-PA-GVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLNLV 237 (240)
Q Consensus 173 RLT~qIa~aL~~~l~-p~-GVaVvveA~H~Cm~~RGv~~~~s~t~Ts~~~G~F~~d~~~R~EFl~ll 237 (240)
.|..++.++|.+.++ |. -++|.++. -.||...|-.++ .-.+.-...|.. +++..++|.+.|
T Consensus 39 ~l~~~ls~~la~~lgKPe~~vmV~~~~-~~~m~fgGs~dP-~a~v~i~sig~~--~~e~n~~~s~~i 101 (133)
T 3fwu_A 39 NLAQVYRAVTRDVLGKPEDLVMMTFHD-STPMHFFGSTDP-VACVRVEALGGY--GPSEPEKVTSIV 101 (133)
T ss_dssp HHHHHHHHHHHHTSCSCGGGCEEEEEC-SCCCCBTTBCSS-CEEEEEECTTCC--CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCccEEEEEEEC-CceEEECCcCCC-EEEEEEEEcCCC--CHHHHHHHHHHH
Confidence 567777777777765 55 45555554 357777777665 445555555654 334555554443
No 29
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=20.48 E-value=1.1e+02 Score=19.53 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHhhcC--CCceEEEEee
Q psy417 170 VQERLTKQIAIAVTKAVQ--PAGVAVVVEG 197 (240)
Q Consensus 170 iQERLT~qIa~aL~~~l~--p~GVaVvveA 197 (240)
--++|.+.|+++|.+.++ +..|.|.++-
T Consensus 16 qk~~l~~~lt~~l~~~lg~~~~~v~V~i~e 45 (64)
T 3abf_A 16 KKRELVRRLTEMASRLLGEPYEEVRVILYE 45 (64)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 346788899999998765 6788887753
Done!