RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy417
(240 letters)
>gnl|CDD|238349 cd00642, GTP_cyclohydro1, GTP cyclohydrolase I (GTP-CH-I) catalyzes
the conversion of GTP into dihydroneopterin
triphosphate. The enzyme product is the precursor of
tetrahydrofolate in eubacteria, fungi, and plants and of
the folate analogs in methanogenic bacteria. In
vertebrates and insects it is the biosynthtic precursor
of tetrahydrobiopterin (BH4) which is involved in the
formation of catacholamines, nitric oxide, and the
stimulation of T lymphocytes. The biosynthetic reaction
of BH4 is controlled by a regulatory protein GFRP which
mediates feedback inhibition of GTP-CH-I by BH4. This
inhibition is reversed by phenylalanine. The decameric
GTP-CH-I forms a complex with two pentameric GFRP in the
presence of phenylalanine or a combination of GTP and
BH4, respectively.
Length = 185
Score = 331 bits (851), Expect = e-117
Identities = 121/182 (66%), Positives = 146/182 (80%)
Query: 57 LPDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDEDHD 116
L + A+ + +L LGE+P+R+GLL+TPER AKA T GYDQ L + N A+FDEDHD
Sbjct: 3 LEKIAAAVREILELLGEDPNREGLLETPERVAKAYQEITSGYDQALNDPKNTAIFDEDHD 62
Query: 117 EMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTK 176
EMV+VKDI +FSMCEHHLVPFYGKV I Y+P K++GLSKLARIVE +SRRLQVQERLTK
Sbjct: 63 EMVIVKDITLFSMCEHHLVPFYGKVHIAYIPKDKVIGLSKLARIVEFFSRRLQVQERLTK 122
Query: 177 QIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLNL 236
QIA+A+ + + P GVAVV+E HMCMVMRGV+K SKTVTS MLG F++DPKTREEFL L
Sbjct: 123 QIAVAIQEILGPQGVAVVIEATHMCMVMRGVRKPGSKTVTSAMLGVFKEDPKTREEFLRL 182
Query: 237 VN 238
+
Sbjct: 183 IR 184
>gnl|CDD|236472 PRK09347, folE, GTP cyclohydrolase I; Provisional.
Length = 188
Score = 303 bits (779), Expect = e-106
Identities = 98/180 (54%), Positives = 128/180 (71%), Gaps = 1/180 (0%)
Query: 60 MTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDED-HDEM 118
+ + + +L ALGE+PDR+GLL TP+R AK GY +EVLN +E +DEM
Sbjct: 8 IEEAVREILEALGEDPDREGLLDTPKRVAKMYEELFSGYANDPKEVLNKTFEEEMGYDEM 67
Query: 119 VVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQI 178
V+VKDI +SMCEHHL+PF GK + Y+P K++GLSK+ARIV+ ++RR QVQERLT QI
Sbjct: 68 VLVKDITFYSMCEHHLLPFIGKAHVAYIPKGKVIGLSKIARIVDFFARRPQVQERLTAQI 127
Query: 179 AIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLNLVN 238
A A+ + + P GVAVV+E HMCM MRGV+K SKTVTS + G F+ DP TR EFL+L+
Sbjct: 128 ADALQEILGPRGVAVVIEAEHMCMTMRGVRKPGSKTVTSALRGLFKTDPATRAEFLSLIR 187
>gnl|CDD|223379 COG0302, FolE, GTP cyclohydrolase I [Coenzyme metabolism].
Length = 195
Score = 296 bits (759), Expect = e-103
Identities = 104/179 (58%), Positives = 140/179 (78%)
Query: 60 MTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDEDHDEMV 119
+ A+ + LL ALGE+PDR+GLL+TP+R AKA GYD+ E++ +A F+EDHDEMV
Sbjct: 15 IEAAVRELLEALGEDPDREGLLETPKRVAKAYRELFSGYDEDPAEIVLEATFEEDHDEMV 74
Query: 120 VVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIA 179
+VKDIE +S+CEHHL+PF+GK + Y+P K++GLSK+ARIV+I++RRLQVQERLT+QIA
Sbjct: 75 LVKDIEFYSLCEHHLLPFFGKAHVAYIPDGKVIGLSKIARIVDIFARRLQVQERLTEQIA 134
Query: 180 IAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLNLVN 238
A+ + ++P GVAVV+E HMCM MRGV+K S TVTS + G F++D KTR EFL L+
Sbjct: 135 DALQEILKPRGVAVVIEAEHMCMSMRGVRKPGSSTVTSALRGLFKEDAKTRAEFLRLIK 193
>gnl|CDD|237149 PRK12606, PRK12606, GTP cyclohydrolase I; Reviewed.
Length = 201
Score = 264 bits (677), Expect = 2e-90
Identities = 107/196 (54%), Positives = 140/196 (71%), Gaps = 6/196 (3%)
Query: 48 HQPPT-----REALLPDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTL 102
QPP R P + A+ + LL ALGE+PDR+GLL TP+R AKAM + GY+Q
Sbjct: 5 DQPPAEIRRGRRFDPPALEAAVRELLEALGEDPDREGLLDTPQRVAKAMQYLCDGYEQDP 64
Query: 103 EEVLNDAVFDEDHDEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVE 162
E L A+FD D+DEMV+V+DIE++S+CEHHL+PF G + YLP K+LGLSK+ARIV+
Sbjct: 65 AEALG-ALFDSDNDEMVIVRDIELYSLCEHHLLPFIGVAHVAYLPGGKVLGLSKIARIVD 123
Query: 163 IYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQ 222
+++RRLQ+QE LT+QIA AV Q G AVV+E H+CM+MRGV+K NS+ +TS MLG
Sbjct: 124 MFARRLQIQENLTRQIATAVVTVTQARGAAVVIEAEHLCMMMRGVRKQNSRMITSVMLGA 183
Query: 223 FRDDPKTREEFLNLVN 238
FRD +TR EFL L+
Sbjct: 184 FRDSAQTRNEFLRLIG 199
>gnl|CDD|129173 TIGR00063, folE, GTP cyclohydrolase I. alternate names: Punch
(Drosophila),GTP cyclohydrolase I (EC 3.5.4.16)
catalyzes the biosynthesis of formic acid and
dihydroneopterin triphosphate from GTP. This reaction is
the first step in the biosynthesis of tetrahydrofolate
in prokaryotes, of tetrahydrobiopterin in vertebrates,
and of pteridine-containing pigments in insects
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 180
Score = 263 bits (674), Expect = 3e-90
Identities = 94/178 (52%), Positives = 125/178 (70%)
Query: 60 MTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDEDHDEMV 119
+ + + +L +GE+ +R+GLL+TP+R AK + GYD + A+F E HDEMV
Sbjct: 1 IAGAMREILELIGEDLNREGLLETPKRVAKMYVEIFSGYDYANFPKITLAIFQEKHDEMV 60
Query: 120 VVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIA 179
+V+DI S CEHHLVPF GK + Y+P K++GLSK+ARIVE ++RR QVQERLT+QIA
Sbjct: 61 LVRDITFTSTCEHHLVPFDGKAHVAYIPKDKVIGLSKIARIVEFFARRPQVQERLTQQIA 120
Query: 180 IAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLNLV 237
A+ + ++P GVAVVVE HMCM MRG++K S TVTS + G F+ D KTR EFL LV
Sbjct: 121 EALQEILEPNGVAVVVEATHMCMKMRGIRKPGSATVTSALGGLFKSDQKTRAEFLRLV 178
>gnl|CDD|240434 PTZ00484, PTZ00484, GTP cyclohydrolase I; Provisional.
Length = 259
Score = 252 bits (645), Expect = 1e-84
Identities = 105/182 (57%), Positives = 142/182 (78%), Gaps = 4/182 (2%)
Query: 60 MTASYKRLLGAL-GENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFD---EDH 115
+ ++ +++L +L GE+PDR GL KTP+R AKA+ F TKGY ++EEV+ A+F +++
Sbjct: 76 IESARRKILKSLEGEDPDRDGLKKTPKRVAKALEFLTKGYHMSVEEVIKKALFKVEPKNN 135
Query: 116 DEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLT 175
DEMV V+DI++FS+CEHHL+PF G+ +IGY+P KK+LGLSK ARI+EI+SRRLQVQERLT
Sbjct: 136 DEMVKVRDIDIFSLCEHHLLPFEGECTIGYIPNKKVLGLSKFARIIEIFSRRLQVQERLT 195
Query: 176 KQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLN 235
+QIA A+ K ++P GVAVV+ HMCM MRGVQK ++ T TS LG FR DPK R EF +
Sbjct: 196 QQIANALQKYLKPMGVAVVIVASHMCMNMRGVQKHDASTTTSAYLGVFRSDPKLRAEFFS 255
Query: 236 LV 237
L+
Sbjct: 256 LI 257
>gnl|CDD|215549 PLN03044, PLN03044, GTP cyclohydrolase I; Provisional.
Length = 188
Score = 239 bits (612), Expect = 1e-80
Identities = 98/185 (52%), Positives = 130/185 (70%), Gaps = 6/185 (3%)
Query: 60 MTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDED----- 114
M + + +L LGE+ +R+GLL TP+R AKA+LF T+GYDQ E VL A+F E
Sbjct: 1 MEQAVRTILECLGEDVEREGLLDTPKRVAKALLFMTQGYDQDPEVVLGTALFHEPEVHDG 60
Query: 115 HDEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLP-CKKILGLSKLARIVEIYSRRLQVQER 173
H+EMVVV+DI++ S CE +VPF G++ +GY+P ILGLSKLARI E+Y+RRLQ QER
Sbjct: 61 HEEMVVVRDIDIHSTCEETMVPFTGRIHVGYIPNAGVILGLSKLARIAEVYARRLQTQER 120
Query: 174 LTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEF 233
LT+QIA A+ ++V+P GV VVVE H CMVMRGV+K + T TS + G F +PK R EF
Sbjct: 121 LTRQIADAIVESVEPLGVMVVVEAAHFCMVMRGVEKHGASTTTSAVRGCFASNPKLRAEF 180
Query: 234 LNLVN 238
++
Sbjct: 181 FRIIR 185
>gnl|CDD|215290 PLN02531, PLN02531, GTP cyclohydrolase I.
Length = 469
Score = 167 bits (425), Expect = 2e-49
Identities = 75/198 (37%), Positives = 103/198 (52%), Gaps = 17/198 (8%)
Query: 58 PDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQT--LEEVLNDAVFDED- 114
P M ++ + +L +LGE+P R+ L+ TP R + +L T+G LE LN ++
Sbjct: 267 PAMVSAVESILRSLGEDPLRKELVLTPSRFVRWLLNSTQGSRMGRNLEMKLNGFACEKMD 326
Query: 115 -------HDEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKI------LGLSKLARIV 161
M ++ +S CEHHL+PFYG V +GY + + S L IV
Sbjct: 327 PLHANLNEKTMHTELNLPFWSQCEHHLLPFYGVVHVGYFCAEGGRGNRNPISRSLLQSIV 386
Query: 162 EIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLG 221
Y RLQVQERLT+QIA V+ + V VVVE H CM+ RGV+K S T T +LG
Sbjct: 387 HFYGFRLQVQERLTRQIAETVSSLLG-GDVMVVVEASHTCMISRGVEKFGSSTATIAVLG 445
Query: 222 QFRDDPKTREEFLNLVNT 239
+F D K R FL + T
Sbjct: 446 RFSSDAKARAMFLQSIAT 463
Score = 152 bits (385), Expect = 2e-43
Identities = 71/191 (37%), Positives = 112/191 (58%), Gaps = 17/191 (8%)
Query: 22 GTLVEKKKNSSASHEKCTFHNDLELDHQPPTREALLPDMTASYKRLLGALGENPDRQGLL 81
G L E N + +L + QP T + ++ K LL LGE+ +R+GL
Sbjct: 2 GALDEGHFNLELDNGVKLDCLELGFEDQPETL-----AIESAVKVLLQGLGEDVNREGLK 56
Query: 82 KTPERAAKAMLFFTKGYDQTLEEVLNDAVFDE---DHDE--------MVVVKDIEMFSMC 130
KTP R AKA+ T+GY Q+ ++++ A+F E D +VVV+D+++FS C
Sbjct: 57 KTPLRVAKALREATRGYKQSAKDIVGGALFPEAGLDDGVGHGGGCGGLVVVRDLDLFSYC 116
Query: 131 EHHLVPFYGKVSIGYLPC-KKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPA 189
E L+PF K IGY+P ++++GLSKL+R+ E++++RLQ +RL +I A+ ++PA
Sbjct: 117 ESCLLPFQVKCHIGYVPSGQRVVGLSKLSRVAEVFAKRLQDPQRLADEICSALHHGIKPA 176
Query: 190 GVAVVVEGVHM 200
GVAVV+E H+
Sbjct: 177 GVAVVLECSHI 187
>gnl|CDD|216375 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I. This family
includes GTP cyclohydrolase enzymes and a family of
related bacterial proteins.
Length = 86
Score = 148 bits (375), Expect = 5e-46
Identities = 53/86 (61%), Positives = 68/86 (79%)
Query: 136 PFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVV 195
PF+GK I Y+P K++GLSKLAR V+ ++RRLQVQERLT QIA A+ +A++P GVAVV+
Sbjct: 1 PFFGKAHIAYIPNGKVIGLSKLARYVDSFARRLQVQERLTNQIADALVEALKPKGVAVVI 60
Query: 196 EGVHMCMVMRGVQKINSKTVTSTMLG 221
E H+CM MRGV+K SKTVTS + G
Sbjct: 61 EAEHLCMTMRGVRKPGSKTVTSALRG 86
>gnl|CDD|238351 cd00651, TFold, Tunnelling fold (T-fold). The five known T-folds
are found in five different enzymes with different
functions: dihydroneopterin-triphosphate epimerase
(DHNTPE), dihydroneopterin aldolase (DHNA) , GTP
cyclohydrolase I (GTPCH-1), 6-pyrovoyl tetrahydropterin
synthetase (PTPS), and uricase (UO,uroate/urate
oxidase). They bind to substrates belonging to the
purine or pterin families, and share a fold-related
binding site with a glutamate or glutamine residue
anchoring the substrate and a lot of conserved
interactions. They also share a similar oligomerization
mode: several T-folds join together to form a
beta(2n)alpha(n) barrel, then two barrels join together
in a head-to-head fashion to made up the native enzymes.
The functional enzyme is a tetramer for UO, a hexamer
for PTPS, an octamer for DHNA/DHNTPE and a decamer for
GTPCH-1. The substrate is located in a deep and narrow
pocket at the interface between monomers. In PTPS, the
active site is located at the interface of three
monomers, two from one trimer and one from the other
trimer. In GTPCH-1, it is also located at the interface
of three subunits, two from one pentamer and one from
the other pentamer. There are four equivalent active
sites in UO, six in PTPS, eight in DHNA/DHNTPE and ten
in GTPCH-1. Each globular multimeric enzyme encloses a
tunnel which is lined with charged residues for DHNA and
UO, and with basic residues in PTPS. The N and
C-terminal ends are located on one side of the T-fold
while the residues involved in the catalytic activity
are located at the opposite side. In PTPS, UO and
DHNA/DHNTPE, the N and C-terminal extremities of the
enzyme are located on the exterior side of the
functional multimeric enzyme. In GTPCH-1, the extra
C-terminal helix places the extremity inside the tunnel.
Length = 122
Score = 72.9 bits (179), Expect = 2e-16
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 16/122 (13%)
Query: 116 DEMVVVKDIEMFSMC----EHHLVPFYGKVSIGYLPCKKI----------LGLSKLARIV 161
+ V VKD+ + V +V + K + + R+
Sbjct: 1 TDGVRVKDLLKVTRLGFVTLERTVGQIFEVDVTLSWDGKKAAASDDVATDTVYNTIYRLA 60
Query: 162 EIYSRRLQVQERLTKQIAIAVTKAVQ--PAGVAVVVEGVHMCMVMRGVQKINSKTVTSTM 219
+ Y Q+ ERL ++IA + + A V V + H + RGV K +
Sbjct: 61 KEYVEGSQLIERLAEEIAYLIAEHFLSSVAEVKVEEKKPHAVIPDRGVFKPTDSPGVTIE 120
Query: 220 LG 221
G
Sbjct: 121 RG 122
>gnl|CDD|223851 COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General
function prediction only].
Length = 149
Score = 30.4 bits (69), Expect = 0.41
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 136 PFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVV 195
P + + I Y+P K + L + + E+ +I + ++P + V
Sbjct: 59 PDFATIYIEYIPDKACVESKSLKLYLFSFRNHGIFHEQCANRIFNDLKALLKPEYLEVYG 118
Query: 196 EGVHMCMVMRGVQKIN 211
+ RG I+
Sbjct: 119 KFTP-----RGGIDID 129
>gnl|CDD|237526 PRK13837, PRK13837, two-component VirA-like sensor kinase;
Provisional.
Length = 828
Score = 30.0 bits (68), Expect = 1.2
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 52 TREALLPDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFT 95
++ ALL + A + L AL + + A AML F+
Sbjct: 114 SQNALLQNSLAYFNSLSSALPRSDSTDAPARAASELASAMLRFS 157
>gnl|CDD|104071 PRK09629, PRK09629, bifunctional thiosulfate
sulfurtransferase/phosphatidylserine decarboxylase;
Provisional.
Length = 610
Score = 29.7 bits (66), Expect = 1.6
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 49 QPPTREALLPDMTASYKRLLGALGENPD 76
+PP LLPD TA ++L G LG NPD
Sbjct: 56 KPPA-PGLLPD-TADLEQLFGELGHNPD 81
>gnl|CDD|216261 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase
family. The members of this family are probably all
pyridoxal-phosphate-dependent aminotransferase enzymes
with a variety of molecular functions. The family
includes StsA, StsC and StsS. The aminotransferase
activity was demonstrated for purified StsC protein as
the L-glutamine:scyllo-inosose aminotransferase
EC:2.6.1.50, which catalyzes the first amino transfer in
the biosynthesis of the streptidine subunit of
streptomycin.
Length = 362
Score = 29.5 bits (67), Expect = 1.7
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 118 MVVVKDIEMFSMCEH---H------LVPFYGKVSIGY----LPCKKILGLSKLARIVEIY 164
VV D E+ H + +V +GY + +GL++L R+ E
Sbjct: 183 AVVTDDPELAERARCLRNHGCGRPAFRRYRHEVPLGYNYRLTELQAAIGLAQLERLDEFI 242
Query: 165 SRRLQVQERLTKQIA 179
+RR ++ E ++ +A
Sbjct: 243 ARRREIAELYSELLA 257
>gnl|CDD|131102 TIGR02047, CadR-PbrR, Cd(II)/Pb(II)-responsive transcriptional
regulator. This model represents the cadmium(II) and/or
lead(II) responsive transcriptional activator of the
proteobacterial metal efflux system. This protein is a
member of the MerR family of transcriptional activators
(pfam00376) and contains a distinctive pattern of
cysteine residues in its metal binding loop,
Cys-X(6-9)-Cys, as well as a conserved and critical
cysteine at the N-terminal end of the dimerization
helix.
Length = 127
Score = 28.2 bits (63), Expect = 1.9
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 76 DRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDEDHDEM 118
++QGLL P R +T G+ + L + N D E+
Sbjct: 21 EKQGLLPPPARTDNNYRVYTVGHVERLAFIRNCRTLDMSLAEI 63
>gnl|CDD|237636 PRK14186, PRK14186, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 27.3 bits (61), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 168 LQVQERLTKQIAIAVTKAVQPAGVAVVVEG 197
++++RL QI + KA +P G+AV+ G
Sbjct: 12 AEIEQRLQAQIESNLPKAGRPPGLAVLRVG 41
>gnl|CDD|213333 cd05131, RasGAP_IQGAP2, Ras-GTPase Activating Domain of IQ motif
containing GTPase activating protein 2. IQGAP2 is a
member of the IQGAP family that contains a
calponin-homology (CH) domain which binds F-actin,
IQGAP-specific repeat, a single WW domain, four IQ
motifs which mediate interactions with calmodulin, and a
Ras-GTPase-activating protein (GAP)-related domain that
binds Rho family GTPases. IQGAP2 and IQGAP3 play
important roles in the regulation of the cytoskeleton
for axon outgrowth in hippocampal neurons and are
thought to stay in a common regulatory pathway. The
results of RNA interference studies indicated that
IQGAP3 partially compensates functions of IQGAP2, but
has lesser ability than IQGAP2 to promote axon outgrowth
in hippocampal neuron. Moreover, IQGAP2 is required for
the cadherin-mediated cell-to-cell adhesion in Xenopus
laevis embryos.
Length = 359
Score = 27.3 bits (60), Expect = 8.2
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 44 LELDHQPPTREALLPDMTASYKRLLGALGENPDRQGLL 81
L L+HQ +A+ PD LL LGE PD + L
Sbjct: 306 LLLEHQ----DAIAPDQNDLLHELLKDLGEVPDVESFL 339
>gnl|CDD|240264 PTZ00094, PTZ00094, serine hydroxymethyltransferase; Provisional.
Length = 452
Score = 27.3 bits (61), Expect = 8.7
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 90 AMLFFTKGYDQTLEEVLNDAVF 111
++F+ K +E +N+AVF
Sbjct: 253 GLIFYRKKVKPDIENKINEAVF 274
>gnl|CDD|220430 pfam09829, DUF2057, Uncharacterized protein conserved in bacteria
(DUF2057). This domain, found in various prokaryotic
proteins, has no known function.
Length = 189
Score = 26.9 bits (60), Expect = 9.2
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 170 VQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQF---RDD 226
++ L + A PA V V ++ ML Q+ + D
Sbjct: 122 YEQELADYNQKSGAAAAVPAPATAVTTAA-AVSVAATTASAQTQNEAEQML-QYWYLQAD 179
Query: 227 PKTREEFLN 235
+TR+ FL
Sbjct: 180 KETRKAFLK 188
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.371
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,099,792
Number of extensions: 1156787
Number of successful extensions: 1023
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1010
Number of HSP's successfully gapped: 25
Length of query: 240
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 146
Effective length of database: 6,768,326
Effective search space: 988175596
Effective search space used: 988175596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)